Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 75
PLN03091 459
PLN03091, PLN03091, hypothetical protein; Provisio
2e-22 PLN03212 249
PLN03212, PLN03212, Transcription repressor MYB5;
9e-17 pfam13921 59
pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do
3e-10 pfam00249 47
pfam00249, Myb_DNA-binding, Myb-like DNA-binding d
3e-09 smart00717 49
smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII
6e-07 COG5147 512
COG5147, REB1, Myb superfamily proteins, including
2e-06 cd00167 45
cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-
5e-06
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional
Back Hide alignment and domain information
Score = 87.7 bits (217), Expect = 2e-22
Identities = 35/64 (54%), Positives = 47/64 (73%), Gaps = 6/64 (9%)
Query: 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQLPKS------GKSCRLRWMNYLRPDIKHGNYT 65
++KG WS EED+KL +I KYGH W+ +PK GKSCRLRW+NYLRPD+K G ++
Sbjct: 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFS 71
Query: 66 KEEE 69
++EE
Sbjct: 72 QQEE 75
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional
Back Show alignment and domain information
Score = 70.9 bits (173), Expect = 9e-17
Identities = 38/77 (49%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 5 PTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLPKS------GKSCRLRWMNYLRPD 58
P GMK+G W+ EED+ L ++I K G W LPK GKSCRLRWMNYLRP
Sbjct: 16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPS 75
Query: 59 IKHGNYTKEEETKRKRL 75
+K G T +EE RL
Sbjct: 76 VKRGGITSDEEDLILRL 92
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain
Back Show alignment and domain information
Score = 50.0 bits (120), Expect = 3e-10
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 17 WSKEEDDKLRAYILKYGHWNWAQ----LPKSGKSCRLRWMNYLRPDIKHGNYTKEEE 69
W++EED+KL + KYG+ +W Q L ++ +CR RW LRP G +TKEE+
Sbjct: 1 WTEEEDEKLLKLVEKYGN-DWKQIAEELGRTPSACRDRWRRKLRPKRSRGPWTKEED 56
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain
Back Show alignment and domain information
Score = 47.1 bits (113), Expect = 3e-09
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 14 KGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL 55
+G W+ EED+ L + K+G+ NW+++ ++ C+ RW NYL
Sbjct: 1 RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Back Show alignment and domain information
Score = 41.4 bits (98), Expect = 6e-07
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 14 KGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP 57
KG W++EED+ L + KYG NW ++ ++ + CR RW N L+P
Sbjct: 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Back Show alignment and domain information
Score = 43.2 bits (102), Expect = 2e-06
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 13 KKGAWSKEEDDKLRAYILKYGHWNWAQL-----PKSGKSCRLRWMNYLRPDIKHGNYTKE 67
K G+W + ED+ L+A + K G NW+++ +GK RW N+L P +K N+++E
Sbjct: 19 KGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEE 78
Query: 68 EETK 71
E+ +
Sbjct: 79 EDEQ 82
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains
Back Show alignment and domain information
Score = 39.1 bits (92), Expect = 5e-06
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 16 AWSKEEDDKLRAYILKYGHWNWAQL-----PKSGKSCRLRWMNYL 55
W++EED+ L + KYG NW ++ ++ K CR RW N L
Sbjct: 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45
Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
75
PLN03091 459
hypothetical protein; Provisional
99.96 PLN03212 249
Transcription repressor MYB5; Provisional
99.95 KOG0048 238
consensus Transcription factor, Myb superfamily [T
99.93 PF13921 60
Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:
99.83 KOG0049 939
consensus Transcription factor, Myb superfamily [T
99.71 PF00249 48
Myb_DNA-binding: Myb-like DNA-binding domain; Inte
99.63 PLN03212 249
Transcription repressor MYB5; Provisional
99.52 PLN03091 459
hypothetical protein; Provisional
99.49 KOG0050 617
consensus mRNA splicing protein CDC5 (Myb superfam
99.43 KOG0049 939
consensus Transcription factor, Myb superfamily [T
99.41 KOG0051 607
consensus RNA polymerase I termination factor, Myb
99.39 smart00717 49
SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi
99.37 COG5147 512
REB1 Myb superfamily proteins, including transcrip
99.33 KOG0048 238
consensus Transcription factor, Myb superfamily [T
99.25 cd00167 45
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do
99.23 COG5147 512
REB1 Myb superfamily proteins, including transcrip
98.5 TIGR01557 57
myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c
98.34 KOG0457 438
consensus Histone acetyltransferase complex SAGA/A
98.22 KOG0050 617
consensus mRNA splicing protein CDC5 (Myb superfam
98.18 PF08914 65
Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150
97.49 TIGR02894 161
DNA_bind_RsfA transcription factor, RsfA family. I
97.45 PF13837 90
Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;
97.42 COG5259 531
RSC8 RSC chromatin remodeling complex subunit RSC8
97.32 KOG1279 506
consensus Chromatin remodeling factor subunit and
97.25 KOG0051 607
consensus RNA polymerase I termination factor, Myb
97.22 PF13921 60
Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:
96.92 PRK13923 170
putative spore coat protein regulator protein YlbO
96.84 PF13325 199
MCRS_N: N-terminal region of micro-spherule protei
96.64 PF13873 78
Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
96.42 PF09111 118
SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain
96.2 COG5114 432
Histone acetyltransferase complex SAGA/ADA, subuni
95.98 PF11626 87
Rap1_C: TRF2-interacting telomeric protein/Rap1 -
94.24 PF12776 96
Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;
93.72 KOG4282 345
consensus Transcription factor GT-2 and related pr
91.74 PF09420 164
Nop16: Ribosome biogenesis protein Nop16; InterPro
89.77 PLN03142 1033
Probable chromatin-remodeling complex ATPase chain
89.18 PF13404 42
HTH_AsnC-type: AsnC-type helix-turn-helix domain;
89.13 PRK11179 153
DNA-binding transcriptional regulator AsnC; Provis
86.27 KOG0384 1373
consensus Chromodomain-helicase DNA-binding protei
86.26 PRK11169 164
leucine-responsive transcriptional regulator; Prov
85.5 COG5118 507
BDP1 Transcription initiation factor TFIIIB, Bdp1
81.38
>PLN03091 hypothetical protein; Provisional
Back Hide alignment and domain information
Probab=99.96 E-value=2.3e-29 Score=179.46 Aligned_cols=75 Identities=49% Similarity=0.937 Sum_probs=72.6
Q ss_pred CCCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc------CChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhc
Q 048053 1 MVRAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP------KSGKSCRLRWMNYLRPDIKHGNYTKEEETKRKR 74 (75)
Q Consensus 1 m~r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia------rt~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~ 74 (75)
|||++||.++.++||+||+|||++|+++|.+||.++|..|| |+++|||+||.++|+|.+++++||+|||++|++
T Consensus 1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe 80 (459)
T PLN03091 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80 (459)
T ss_pred CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 499999999999999999999999999999986
Q ss_pred C
Q 048053 75 L 75 (75)
Q Consensus 75 l 75 (75)
+
T Consensus 81 L 81 (459)
T PLN03091 81 L 81 (459)
T ss_pred H
Confidence 4
>PLN03212 Transcription repressor MYB5; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=1.4e-28 Score=165.36 Aligned_cols=74 Identities=50% Similarity=0.929 Sum_probs=70.0
Q ss_pred CCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc------CChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 2 VRAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP------KSGKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 2 ~r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia------rt~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
.+.|||.++++++++||+|||++|+++|++||..+|..|| |+++|||+||.++|+|.+++++||.|||++|+++
T Consensus 13 ~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel 92 (249)
T PLN03212 13 KTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRL 92 (249)
T ss_pred CCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHH
Confidence 3679999999999999999999999999999988999998 4899999999999999999999999999999863
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Back Show alignment and domain information
Probab=99.93 E-value=5.2e-26 Score=152.56 Aligned_cols=67 Identities=49% Similarity=0.872 Sum_probs=62.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCccccC------ChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 9 GRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK------SGKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 9 ~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar------t~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
+|.+.||+||+|||++|+.+|.+||+++|..||+ ++++||.||.|||+|+++++.||+|||..|++|
T Consensus 4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~l 76 (238)
T KOG0048|consen 4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKL 76 (238)
T ss_pred CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHH
Confidence 3445689999999999999999999999999994 899999999999999999999999999999875
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A
Back Show alignment and domain information
Probab=99.83 E-value=1.1e-20 Score=102.92 Aligned_cols=55 Identities=45% Similarity=0.934 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCCCCCCCCHHHHHHH
Q 048053 17 WSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEETKR 72 (75)
Q Consensus 17 Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L 72 (75)
||+|||++|+.+|..|| .+|..|| ||+.||+.||.++|.|.+++++||++||++|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 5999999 5999999999999999999999999999987
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Back Show alignment and domain information
Probab=99.71 E-value=5.4e-18 Score=126.12 Aligned_cols=75 Identities=27% Similarity=0.459 Sum_probs=70.6
Q ss_pred CCCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 1 MVRAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 1 m~r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
++|+...+.|++++|+||++||.+|+.+|.+||...|.+|- |+..|||+||.|.|+...+.+.||-.||+.|+.+
T Consensus 347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~ 426 (939)
T KOG0049|consen 347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYA 426 (939)
T ss_pred hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHH
Confidence 46888899999999999999999999999999999999987 5999999999999999999999999999999863
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins
Back Show alignment and domain information
Probab=99.63 E-value=2.5e-16 Score=82.57 Aligned_cols=42 Identities=43% Similarity=0.935 Sum_probs=36.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccc------CChHHHHHHHHhhc
Q 048053 14 KGAWSKEEDDKLRAYILKYGHWNWAQLP------KSGKSCRLRWMNYL 55 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia------rt~~qcr~Rw~~~L 55 (75)
|++||+|||++|+++|.+||.++|..|| ||+.||+.||.++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 6899999999999999999975699999 49999999999875
These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
>PLN03212 Transcription repressor MYB5; Provisional
Back Show alignment and domain information
Probab=99.52 E-value=1.4e-15 Score=102.70 Aligned_cols=57 Identities=19% Similarity=0.369 Sum_probs=51.5
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCCC
Q 048053 3 RAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIK 60 (75)
Q Consensus 3 r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~ 60 (75)
|+..+++|++++++||+|||++|++++..|| ++|..|| ||++||++||+.+|...+.
T Consensus 67 RW~N~L~P~I~kgpWT~EED~lLlel~~~~G-nKWs~IAk~LpGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 67 RWMNYLRPSVKRGGITSDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred HHHHhhchhcccCCCChHHHHHHHHHHHhcc-ccHHHHHhhcCCCCHHHHHHHHHHHHhHHHH
Confidence 5667899999999999999999999999999 6999999 4999999999998876543
>PLN03091 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.49 E-value=7.2e-15 Score=105.60 Aligned_cols=54 Identities=20% Similarity=0.447 Sum_probs=49.4
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCC
Q 048053 3 RAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP 57 (75)
Q Consensus 3 r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~ 57 (75)
|+..+++|++++|+||+|||++|++++..|| .+|..|| ||+++|++||+.+|..
T Consensus 56 RW~NyLdP~IkKgpWT~EED~lLLeL~k~~G-nKWskIAk~LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 56 RWINYLRPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred HHHhccCCcccCCCCCHHHHHHHHHHHHHhC-cchHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 5667899999999999999999999999999 5999999 4999999999987654
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Back Show alignment and domain information
Probab=99.43 E-value=2.3e-14 Score=104.60 Aligned_cols=64 Identities=33% Similarity=0.848 Sum_probs=60.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
++.|.|+.-||+.|..+|.+||.+.|+.|+. ++.||+.||..+|+|.|++..||.+||++||.|
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhl 73 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHL 73 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHH
Confidence 5779999999999999999999999999994 999999999999999999999999999999864
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Back Show alignment and domain information
Probab=99.41 E-value=1.1e-13 Score=103.54 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=43.2
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc------CChHHHHHHHHh
Q 048053 5 PTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP------KSGKSCRLRWMN 53 (75)
Q Consensus 5 ~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia------rt~~qcr~Rw~~ 53 (75)
+.++.|+++|..||+|||++|+.+...+|..+|..|| |++.||.++|+.
T Consensus 244 ~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t 298 (939)
T KOG0049|consen 244 YNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKT 298 (939)
T ss_pred hhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999999 488899874433
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Back Show alignment and domain information
Probab=99.39 E-value=2.5e-13 Score=100.67 Aligned_cols=62 Identities=29% Similarity=0.708 Sum_probs=58.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcccc----CChHHHHHHHHhhcCCCC--CCCCCCHHHHHHHhcC
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLP----KSGKSCRLRWMNYLRPDI--KHGNYTKEEETKRKRL 75 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia----rt~~qcr~Rw~~~L~~~~--~~~~wt~eEd~~L~~l 75 (75)
.+|.||++|++.|..+|.++| +.|..|+ |.|..|++||+++..+.- +++.||.||.++|+++
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lgr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~ 450 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALGRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKT 450 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHH
Confidence 899999999999999999999 7999998 599999999999999974 8999999999999864
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Back Show alignment and domain information
Probab=99.37 E-value=7.3e-13 Score=67.65 Aligned_cols=43 Identities=42% Similarity=0.974 Sum_probs=39.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcC
Q 048053 14 KGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLR 56 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~ 56 (75)
+++||++||.+|+.++..||..+|..|| +|+.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999966999999 499999999998765
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Back Show alignment and domain information
Probab=99.33 E-value=3.5e-13 Score=98.68 Aligned_cols=66 Identities=35% Similarity=0.705 Sum_probs=61.9
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 10 RGMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 10 ~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
-.++.|.|+..||+.|..+|+.+|+++|+.||. +++||+.||+++++|.++++.|+.+||..|+.|
T Consensus 16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l 86 (512)
T COG5147 16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDL 86 (512)
T ss_pred ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHH
Confidence 356889999999999999999999999999993 999999999999999999999999999999864
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Back Show alignment and domain information
Probab=99.25 E-value=5.4e-12 Score=84.79 Aligned_cols=55 Identities=22% Similarity=0.430 Sum_probs=50.1
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcCCC
Q 048053 3 RAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPD 58 (75)
Q Consensus 3 r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~~~ 58 (75)
|...|++|+++||.||+|||..|++++..+| +.|+.||+ |++.+++.|+..|...
T Consensus 51 RW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G-NrWs~IA~~LPGRTDNeIKN~Wnt~lkkk 110 (238)
T KOG0048|consen 51 RWTNYLRPDLKRGNFSDEEEDLIIKLHALLG-NRWSLIAGRLPGRTDNEVKNHWNTHLKKK 110 (238)
T ss_pred HhhcccCCCccCCCCCHHHHHHHHHHHHHHC-cHHHHHHhhCCCcCHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999 79999994 9999999999887653
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains
Back Show alignment and domain information
Probab=99.23 E-value=1.2e-11 Score=62.18 Aligned_cols=40 Identities=45% Similarity=0.936 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhc
Q 048053 16 AWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYL 55 (75)
Q Consensus 16 ~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L 55 (75)
+||++||..|+.++..||..+|..||+ ++.+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 699999999999999999779999994 9999999998763
Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Back Show alignment and domain information
Probab=98.50 E-value=3e-08 Score=73.08 Aligned_cols=64 Identities=28% Similarity=0.638 Sum_probs=56.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCccccC----ChHHHHHHHHhhcCC--CCCCCCCCHHHHHHHhc
Q 048053 10 RGMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK----SGKSCRLRWMNYLRP--DIKHGNYTKEEETKRKR 74 (75)
Q Consensus 10 ~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar----t~~qcr~Rw~~~L~~--~~~~~~wt~eEd~~L~~ 74 (75)
+.-.+|.||++|+..|...+..+| ..|..|++ -+..|++||.+|..+ .+++++||.||+.+|..
T Consensus 287 ~f~~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~ 356 (512)
T COG5147 287 IFEQRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLGRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDK 356 (512)
T ss_pred HHhhhccCcccccccccccccccc-chhhHhhhhhccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHH
Confidence 334689999999999999999999 59999995 888999999999999 67788999999988753
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class
Back Show alignment and domain information
Probab=98.34 E-value=9.5e-07 Score=47.96 Aligned_cols=43 Identities=14% Similarity=0.362 Sum_probs=37.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCC---cccc------C-ChHHHHHHHHhhc
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNW---AQLP------K-SGKSCRLRWMNYL 55 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W---~~Ia------r-t~~qcr~Rw~~~L 55 (75)
++-.||+||..++++++..+|.++| ..|+ + |..||+.+.+.|.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998799 8886 3 8999999998874
This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=98.22 E-value=1.6e-06 Score=62.75 Aligned_cols=46 Identities=17% Similarity=0.473 Sum_probs=41.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcC
Q 048053 11 GMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLR 56 (75)
Q Consensus 11 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~ 56 (75)
.+-...||.+|+-.|++++..||.|||..||. +..+|+++|.++..
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 45678899999999999999999999999994 99999999999643
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Back Show alignment and domain information
Probab=98.18 E-value=3.7e-07 Score=67.44 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=46.3
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc----CChHHHHHHHHhhcCC
Q 048053 6 TYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP----KSGKSCRLRWMNYLRP 57 (75)
Q Consensus 6 ~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia----rt~~qcr~Rw~~~L~~ 57 (75)
-+++|.+++.-||.|||++|+.+..... ..|..|| +++.||-+||++.|..
T Consensus 51 e~ldp~i~~tews~eederlLhlakl~p-~qwrtIa~i~gr~~~qc~eRy~~ll~~ 105 (617)
T KOG0050|consen 51 EWLDPAIKKTEWSREEDERLLHLAKLEP-TQWRTIADIMGRTSQQCLERYNNLLDV 105 (617)
T ss_pred HHhCHHHhhhhhhhhHHHHHHHHHHhcC-CccchHHHHhhhhHHHHHHHHHHHHHH
Confidence 3578999999999999999999999998 4999999 5999999999998754
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif
Back Show alignment and domain information
Probab=97.49 E-value=4.4e-05 Score=42.40 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=27.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--------CCCccccC------ChHHHHHHHHhhcCCCC
Q 048053 14 KGAWSKEEDDKLRAYILKYGH--------WNWAQLPK------SGKSCRLRWMNYLRPDI 59 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~--------~~W~~Iar------t~~qcr~Rw~~~L~~~~ 59 (75)
+.+||.+||+.|+..|..+.. .-|..+++ |-.+-|+||...|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 568999999999999976632 12666553 66788999999988753
The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family
Back Show alignment and domain information
Probab=97.45 E-value=0.0001 Score=47.45 Aligned_cols=46 Identities=30% Similarity=0.699 Sum_probs=35.7
Q ss_pred CccCCCCHHHHHHHHHHHHHh---CC---CCCcc----ccCChHHHHHHHHhhcCC
Q 048053 12 MKKGAWSKEEDDKLRAYILKY---GH---WNWAQ----LPKSGKSCRLRWMNYLRP 57 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~---g~---~~W~~----Iart~~qcr~Rw~~~L~~ 57 (75)
.+...||.|||.+|.+.|-.| |. ..... ++||+..|.-||+.++..
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALNRTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHcccHHHhcchHHHHHHH
Confidence 367799999999999999988 32 01332 336999999999999874
In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A
Back Show alignment and domain information
Probab=97.42 E-value=9.6e-05 Score=42.13 Aligned_cols=42 Identities=21% Similarity=0.597 Sum_probs=30.1
Q ss_pred cCCCCHHHHHHHHHHHHH------hC---C--C--CCcccc---------CChHHHHHHHHhhc
Q 048053 14 KGAWSKEEDDKLRAYILK------YG---H--W--NWAQLP---------KSGKSCRLRWMNYL 55 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~------~g---~--~--~W~~Ia---------rt~~qcr~Rw~~~L 55 (75)
+..||.+|...|+.++.. ++ . + -|..|| +|+.||+.+|.+..
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 358999999999999877 11 1 1 399999 39999999999864
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Back Show alignment and domain information
Probab=97.32 E-value=0.00015 Score=53.31 Aligned_cols=41 Identities=24% Similarity=0.553 Sum_probs=37.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhh
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNY 54 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~ 54 (75)
....||.+|-.+|+++|+.|| .+|.+||+ +..||-.+|.+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 456999999999999999999 59999995 999999999763
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=97.25 E-value=0.00028 Score=52.38 Aligned_cols=44 Identities=23% Similarity=0.510 Sum_probs=38.6
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhh
Q 048053 10 RGMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNY 54 (75)
Q Consensus 10 ~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~ 54 (75)
....++.||.+|+-+|+++|..|| .+|.+||. |..||-.++...
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHhc
Confidence 344678999999999999999999 59999994 999999999763
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Back Show alignment and domain information
Probab=97.22 E-value=0.00016 Score=54.50 Aligned_cols=55 Identities=29% Similarity=0.626 Sum_probs=43.0
Q ss_pred CccCCCCHHHHHHHHHHHH-------Hh------------------CCCCCcccc-----CChHHHHHHHHhhcC-CCCC
Q 048053 12 MKKGAWSKEEDDKLRAYIL-------KY------------------GHWNWAQLP-----KSGKSCRLRWMNYLR-PDIK 60 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~-------~~------------------g~~~W~~Ia-----rt~~qcr~Rw~~~L~-~~~~ 60 (75)
.++|+||.||.++|+.+|+ ++ ...+|..|+ |+..|||..|...+- |..+
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n 513 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFN 513 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhh
Confidence 5999999999999999995 22 224799999 499999999999764 4555
Q ss_pred CCCCCH
Q 048053 61 HGNYTK 66 (75)
Q Consensus 61 ~~~wt~ 66 (75)
...|..
T Consensus 514 ~~~~~~ 519 (607)
T KOG0051|consen 514 KRQESK 519 (607)
T ss_pred cccccc
Confidence 555553
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A
Back Show alignment and domain information
Probab=96.92 E-value=0.00031 Score=37.52 Aligned_cols=20 Identities=35% Similarity=0.699 Sum_probs=17.7
Q ss_pred CCCCCCCccCCCCHHHHHHH
Q 048053 6 TYDGRGMKKGAWSKEEDDKL 25 (75)
Q Consensus 6 ~~~~~~~~k~~Wt~eED~~L 25 (75)
..++|.+.+++||++||++|
T Consensus 41 ~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 41 NHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp HTTSTTSTSSSSSHHHHHHH
T ss_pred HHCcccccCCCcCHHHHhcC
Confidence 35789999999999999987
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Back Show alignment and domain information
Probab=96.84 E-value=0.00089 Score=43.54 Aligned_cols=46 Identities=26% Similarity=0.545 Sum_probs=35.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccc----------CChHHHHHHHHhhcCC
Q 048053 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQLP----------KSGKSCRLRWMNYLRP 57 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia----------rt~~qcr~Rw~~~L~~ 57 (75)
.++..||.|||.+|.+.|-.|+...=.+++ +++.+|..||+.++..
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vrk 58 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVRK 58 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Confidence 467899999999998888888542222333 5999999999887763
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Back Show alignment and domain information
Probab=96.64 E-value=0.0046 Score=41.12 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCcccc------C--ChHHHHHHHHhhc-CCCC--------------------CCCCCCH
Q 048053 16 AWSKEEDDKLRAYILKYGHWNWAQLP------K--SGKSCRLRWMNYL-RPDI--------------------KHGNYTK 66 (75)
Q Consensus 16 ~Wt~eED~~L~~~v~~~g~~~W~~Ia------r--t~~qcr~Rw~~~L-~~~~--------------------~~~~wt~ 66 (75)
+|++++|-.|+.+|..-. +-..|+ + |-..+.+||...| +|.+ .+.+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999997653 333343 3 8888999998866 3332 3568999
Q ss_pred HHHHHHhc
Q 048053 67 EEETKRKR 74 (75)
Q Consensus 67 eEd~~L~~ 74 (75)
+|++.|..
T Consensus 79 ~EE~lL~~ 86 (199)
T PF13325_consen 79 EEEQLLGT 86 (199)
T ss_pred HHHHHHHh
Confidence 99999864
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Back Show alignment and domain information
Probab=96.42 E-value=0.0023 Score=35.76 Aligned_cols=42 Identities=26% Similarity=0.451 Sum_probs=33.4
Q ss_pred cCCCCHHHHHHHHHHHHHh-----CC-----------CCCcccc----------CChHHHHHHHHhhc
Q 048053 14 KGAWSKEEDDKLRAYILKY-----GH-----------WNWAQLP----------KSGKSCRLRWMNYL 55 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~-----g~-----------~~W~~Ia----------rt~~qcr~Rw~~~L 55 (75)
+..||++|...|+++|..| |. .-|..|+ +|..|++..|.++.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 5689999999999999987 20 1377777 38889999998864
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices
Back Show alignment and domain information
Probab=96.20 E-value=0.0075 Score=37.04 Aligned_cols=46 Identities=28% Similarity=0.460 Sum_probs=34.5
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCC---CCCcccc-----------------CChHHHHHHHHhhc
Q 048053 10 RGMKKGAWSKEEDDKLRAYILKYGH---WNWAQLP-----------------KSGKSCRLRWMNYL 55 (75)
Q Consensus 10 ~~~~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----------------rt~~qcr~Rw~~~L 55 (75)
|+-++..||.+||..|+-++.+||. +.|..|- ||+..+..|=...|
T Consensus 45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi 110 (118)
T PF09111_consen 45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI 110 (118)
T ss_dssp STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence 3667889999999999999999998 8898887 27777766655443
It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=95.98 E-value=0.0057 Score=43.66 Aligned_cols=45 Identities=13% Similarity=0.381 Sum_probs=40.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcC
Q 048053 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLR 56 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~ 56 (75)
+--..|+.+|+-+|++.....|-+||..||. +...|+++|..++.
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 3455799999999999999999999999994 88899999998765
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []
Back Show alignment and domain information
Probab=94.24 E-value=0.056 Score=31.18 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=13.3
Q ss_pred CCCccCCCCHHHHHHH--------HHHHHHhC
Q 048053 10 RGMKKGAWSKEEDDKL--------RAYILKYG 33 (75)
Q Consensus 10 ~~~~k~~Wt~eED~~L--------~~~v~~~g 33 (75)
|.-..|-||+++|+.| ..++++||
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG 74 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG 74 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH-
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC
Confidence 4456899999999998 33556666
The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains
Back Show alignment and domain information
Probab=93.72 E-value=0.14 Score=29.23 Aligned_cols=39 Identities=18% Similarity=0.530 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHh---C----CCC-----CccccC----------ChHHHHHHHHhh
Q 048053 16 AWSKEEDDKLRAYILKY---G----HWN-----WAQLPK----------SGKSCRLRWMNY 54 (75)
Q Consensus 16 ~Wt~eED~~L~~~v~~~---g----~~~-----W~~Iar----------t~~qcr~Rw~~~ 54 (75)
.||+++++.|++++... | .+. |..|+. +..||++||...
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 59999999999988654 1 223 555552 888999998754
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Back Show alignment and domain information
Probab=91.74 E-value=0.19 Score=35.34 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHh----C-----CCCCccccC---------ChHHHHHHHHhhcC
Q 048053 15 GAWSKEEDDKLRAYILKY----G-----HWNWAQLPK---------SGKSCRLRWMNYLR 56 (75)
Q Consensus 15 ~~Wt~eED~~L~~~v~~~----g-----~~~W~~Iar---------t~~qcr~Rw~~~L~ 56 (75)
..|+.+|-..|+.+.... + ..-|..||+ |+.||+.+|.+...
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k 114 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKK 114 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 689999999999987633 1 135999994 99999999988653
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit
Back Show alignment and domain information
Probab=89.77 E-value=0.59 Score=29.82 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=36.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCccccC---------ChHHHHHHHHhhc
Q 048053 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQLPK---------SGKSCRLRWMNYL 55 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar---------t~~qcr~Rw~~~L 55 (75)
-....=|..|-.-|..+|.+|| .++..+|+ |+.||+.+...+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhG-dDy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHG-DDYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHC-ccHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 3556778999999999999999 59999995 9999998887664
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Back Show alignment and domain information
Probab=89.18 E-value=0.67 Score=37.52 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=36.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccc-----------------CChHHHHHHHHhhcC
Q 048053 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----------------KSGKSCRLRWMNYLR 56 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----------------rt~~qcr~Rw~~~L~ 56 (75)
-++..+|.+||..|+-.+.+||.++|..|- ||+..+..|=...|.
T Consensus 924 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 924 NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 355579999999999999999999999884 388887777766554
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B
Back Show alignment and domain information
Probab=89.13 E-value=0.4 Score=24.08 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCCCCccccC----ChHHHHHHHHh
Q 048053 20 EEDDKLRAYILKYGHWNWAQLPK----SGKSCRLRWMN 53 (75)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Iar----t~~qcr~Rw~~ 53 (75)
+=|.+|+.+++..|...+..||+ |+..|..|...
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELGLSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHH
Confidence 45889999999999889999996 99999999865
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Back Show alignment and domain information
Probab=86.27 E-value=0.87 Score=28.42 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhCCCCCccccC----ChHHHHHHHHhhcCCCCC
Q 048053 19 KEEDDKLRAYILKYGHWNWAQLPK----SGKSCRLRWMNYLRPDIK 60 (75)
Q Consensus 19 ~eED~~L~~~v~~~g~~~W~~Iar----t~~qcr~Rw~~~L~~~~~ 60 (75)
.+-|.+|+.+.+..|...|..||+ |+..|+.|+......++-
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 467999999999999899999997 999999999998776643
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Back Show alignment and domain information
Probab=86.26 E-value=0.33 Score=39.95 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=26.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcccc
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLP 41 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia 41 (75)
.-.-|..++|..|+-.|-+||.++|..|-
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir 1160 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIR 1160 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhc
Confidence 34579999999999999999999999887
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Back Show alignment and domain information
Probab=85.50 E-value=0.66 Score=29.35 Aligned_cols=43 Identities=21% Similarity=0.170 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHhCCCCCccccC----ChHHHHHHHHhhcCCCCC
Q 048053 18 SKEEDDKLRAYILKYGHWNWAQLPK----SGKSCRLRWMNYLRPDIK 60 (75)
Q Consensus 18 t~eED~~L~~~v~~~g~~~W~~Iar----t~~qcr~Rw~~~L~~~~~ 60 (75)
-.+-|.+|+.+.+..|.-.|..||+ |+..|+.|+....+..+-
T Consensus 12 lD~~D~~IL~~Lq~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI 58 (164)
T PRK11169 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFI 58 (164)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 3567899999999999889999997 999999999998877653
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Back Show alignment and domain information
Probab=81.38 E-value=1.8 Score=31.89 Aligned_cols=40 Identities=18% Similarity=0.421 Sum_probs=35.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHh
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMN 53 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~ 53 (75)
.--+||.+|-++...++..+|. +...|| |+.+|++-.|.+
T Consensus 364 ~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIWGT-DFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred CCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcCchhHHHHHHHHHH
Confidence 3457999999999999999995 999999 488999988866
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 75
d1gvda_ 52
a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus
1e-15 d1guua_ 50
a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus
4e-14 d1igna1 86
a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba
1e-11 d2ckxa1 83
a.4.1.3 (A:578-660) Telomere binding protein TBP1
2e-09 d1w0ua_ 55
a.4.1.4 (A:) Telomeric repeat binding factor 2, TR
1e-08 d1w0ta_ 52
a.4.1.4 (A:) DNA-binding domain of human telomeric
2e-08 d2cu7a1 65
a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap
3e-07 d1x41a1 47
a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T
4e-07 d1gv2a2 47
a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou
2e-06 d2cjja1 63
a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti
9e-06 d2cqra1 60
a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1
2e-04 d2iw5b1 65
a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu
0.001
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52
Back Hide information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.7 bits (150), Expect = 1e-15
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPD 58
+ KG W+KEED +L + KYG W+ + K GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.8 bits (140), Expect = 4e-14
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 14 KGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPD 58
K W++EED+KL+ + + G +W + + C+ RW L P+
Sbjct: 1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 50
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (126), Expect = 1e-11
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 14 KGAWSKEEDDKLRAYILKYGHW-----NWAQLPK-----SGKSCRLRWMNYLRPDIKHGN 63
K +++ EED+ + + K + ++ +G S R R+ YL +++
Sbjct: 1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60
Query: 64 YTKEEE 69
+
Sbjct: 61 EVDKFG 66
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 47.0 bits (111), Expect = 2e-09
Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 14/71 (19%)
Query: 16 AWSKEEDDKLRAYILKYGHWNWAQLPK---------SGKSCRLRWMNYLR-----PDIKH 61
+S E + L + G W + + + +W + P +
Sbjct: 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61
Query: 62 GNYTKEEETKR 72
G ++ R
Sbjct: 62 GEPVPQDLLDR 72
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (104), Expect = 1e-08
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLPK-------SGKSCRLRWMNYLRPDI 59
KK W+ EE + ++A + KYG NWA + K + + RW R +
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (103), Expect = 2e-08
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLPK-------SGKSCRLRWMNYLR 56
K+ AW EED LR+ + KYG NW+++ + + RW +
Sbjct: 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (96), Expect = 3e-07
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 17 WSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYTKEEETK 71
W+ EE + + K+G W ++ K + + Y + +K G + K
Sbjct: 5 WTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQK 63
Query: 72 R 72
Sbjct: 64 T 64
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (93), Expect = 4e-07
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 17 WSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNY 54
W+ +E+ L ++ G NW + + + C +M Y
Sbjct: 4 WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 46
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.6 bits (90), Expect = 2e-06
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 14 KGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLR 56
K +W++EED + + G+ WA++ K + + + W + +R
Sbjct: 1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMR 47
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]
Score = 37.2 bits (86), Expect = 9e-06
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 9/53 (16%)
Query: 17 WSKEEDDKLRAYILKYGHWNWAQLP--------KSGKSCRLRWMNYLRPDIKH 61
WS +E+ + Y + ++ + + + L DIK+
Sbjct: 4 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.8 bits (77), Expect = 2e-04
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 8/47 (17%)
Query: 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLPK--------SGKSCRLRW 51
+ W++ + L + +Y + K S + C R+
Sbjct: 11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]
Score = 31.7 bits (72), Expect = 0.001
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 13 KKGAWSKEEDDKLRAYILKYGHWNWA---QLP-KSGKSCRLRWMNYLR---PDIKHGNYT 65
W+ EE I KYG A + KS + ++NY R D +
Sbjct: 4 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWE 63
Query: 66 KE 67
E
Sbjct: 64 AE 65
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 75
d1gvda_ 52
c-Myb, DNA-binding domain {Mouse (Mus musculus) [T
99.88 d1igna1 86
DNA-binding domain of rap1 {Baker's yeast (Sacchar
99.87 d1guua_ 50
c-Myb, DNA-binding domain {Mouse (Mus musculus) [T
99.84 d1w0ua_ 55
Telomeric repeat binding factor 2, TRF2 {Human (Ho
99.8 d1w0ta_ 52
DNA-binding domain of human telomeric protein, hTR
99.76 d2ckxa1 83
Telomere binding protein TBP1 {Tobacco (Nicotiana
99.74 d1gv2a2 47
c-Myb, DNA-binding domain {Mouse (Mus musculus) [T
99.71 d1x41a1 47
Transcriptional adaptor 2-like, TADA2L, isoform b
99.68 d2cu7a1 65
MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960
99.57 d2cqra1 60
DnaJ homolog subfamily C member 1 {Human (Homo sap
99.56 d2cjja1 63
Radialis {Garden snapdragon (Antirrhinum majus) [T
99.46 d2iw5b1 65
REST corepressor 1, CoREST {Human (Homo sapiens) [
99.28 d1xc5a1 68
Nuclear receptor corepressor 2 {Human (Homo sapien
99.26 d1ug2a_ 95
2610100b20rik gene product {Mouse (Mus musculus) [
99.15 d2cqqa1 59
DnaJ homolog subfamily C member 1 {Human (Homo sap
98.13 d2crga1 57
Metastasis associated protein MTA3 {Mouse (Mus mus
98.13 d1fexa_ 59
Rap1 {Human (Homo sapiens) [TaxId: 9606]}
97.72 d1irza_ 64
Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId
97.14 d1x58a1 49
Hypothetical protein 4930532d21rik {Mouse (Mus mus
96.6 d2cqra1 60
DnaJ homolog subfamily C member 1 {Human (Homo sap
96.54 d1wgxa_ 73
Hypothetical protein C14orf106 (KIAA1903) {Human (
95.7 d1ofcx2 128
SLIDE domain of the nucleosome remodeling ATPase I
95.07 d1igna1 86
DNA-binding domain of rap1 {Baker's yeast (Sacchar
93.01 d1ug2a_ 95
2610100b20rik gene product {Mouse (Mus musculus) [
92.83
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Back Hide information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=1.8e-23 Score=110.03 Aligned_cols=47 Identities=47% Similarity=0.969 Sum_probs=44.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcCCC
Q 048053 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPD 58 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~~~ 58 (75)
++||+||+|||++|+++|.+||.++|..||+ |+.||++||.++|+|.
T Consensus 1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~ 52 (52)
T d1gvda_ 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence 5799999999999999999999889999994 9999999999999984
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
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class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=1e-24 Score=125.21 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=56.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC-----CCcccc-----CChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhc
Q 048053 14 KGAWSKEEDDKLRAYILKYGHW-----NWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEETKRKR 74 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~-----~W~~Ia-----rt~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~ 74 (75)
|++||+|||++|+++|.+||.. +|..|| ||++||++||+++|+|.+++++||.+||.+|++
T Consensus 1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d 71 (86)
T d1igna1 1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRD 71 (86)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHH
Confidence 6899999999999999999864 399999 499999999999999999999999999998765
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=5.1e-22 Score=103.58 Aligned_cols=45 Identities=31% Similarity=0.809 Sum_probs=42.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCC
Q 048053 14 KGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD 58 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~ 58 (75)
|++||++||++|+.+|++||.++|..|| ||+.||++||.++|+|.
T Consensus 1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 50 (50)
T d1guua_ 1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 50 (50)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence 6899999999999999999988999999 59999999999999984
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2e-20 Score=99.13 Aligned_cols=48 Identities=31% Similarity=0.612 Sum_probs=44.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcccc-------CChHHHHHHHHhhcCCCCC
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLP-------KSGKSCRLRWMNYLRPDIK 60 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-------rt~~qcr~Rw~~~L~~~~~ 60 (75)
++++||+|||+.|+++|++||.++|..|| ||+.||++||+++++|.++
T Consensus 1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N 55 (55)
T d1w0ua_ 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 55 (55)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence 57899999999999999999988999997 4999999999999998875
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.7e-19 Score=93.75 Aligned_cols=44 Identities=34% Similarity=0.665 Sum_probs=40.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcccc-------CChHHHHHHHHhhcC
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLP-------KSGKSCRLRWMNYLR 56 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-------rt~~qcr~Rw~~~L~ 56 (75)
++++||+|||+.|+++|.+||.++|..|| ||+.||++||.++..
T Consensus 1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K 51 (52)
T d1w0ta_ 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (52)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence 57899999999999999999988999998 499999999998753
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.74 E-value=8.2e-19 Score=99.54 Aligned_cols=54 Identities=15% Similarity=0.341 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCcccc---------CChHHHHHHHHhhc-----CCCCCCCCCCHHHH
Q 048053 16 AWSKEEDDKLRAYILKYGHWNWAQLP---------KSGKSCRLRWMNYL-----RPDIKHGNYTKEEE 69 (75)
Q Consensus 16 ~Wt~eED~~L~~~v~~~g~~~W~~Ia---------rt~~qcr~Rw~~~L-----~~~~~~~~wt~eEd 69 (75)
+||+|||+.|+.+|.+||.++|..|+ ||+.||++||+++| +|..+++.|+++|-
T Consensus 2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~el 69 (83)
T d2ckxa1 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDL 69 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHHH
Confidence 89999999999999999988999997 59999999999998 56778899997775
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=3.2e-18 Score=87.98 Aligned_cols=42 Identities=26% Similarity=0.639 Sum_probs=38.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcC
Q 048053 14 KGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLR 56 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~ 56 (75)
|++||+|||+.|+++|++||. +|+.||+ |+.||++||.++|.
T Consensus 1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~gRt~~~~knr~~~~lr 47 (47)
T d1gv2a2 1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMR 47 (47)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence 679999999999999999995 9999994 99999999999873
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.5e-17 Score=85.34 Aligned_cols=39 Identities=26% Similarity=0.703 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhh
Q 048053 16 AWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNY 54 (75)
Q Consensus 16 ~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~ 54 (75)
.||++||++|+++|++||.++|..|| ||+.||+.||.++
T Consensus 3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~ 46 (47)
T d1x41a1 3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 46 (47)
T ss_dssp SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence 59999999999999999998999999 5999999999986
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.6e-16 Score=84.07 Aligned_cols=52 Identities=17% Similarity=0.409 Sum_probs=45.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCCCCCCCCH
Q 048053 14 KGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTK 66 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~~~~wt~ 66 (75)
...||+|||++|+++|..|| .+|..|| ||+.||++||.+++.+..+.+.+..
T Consensus 2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~ 58 (65)
T d2cu7a1 2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKE 58 (65)
T ss_dssp CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCC
T ss_pred CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 35799999999999999999 6999999 4999999999999988777665543
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.7e-15 Score=80.07 Aligned_cols=47 Identities=17% Similarity=0.409 Sum_probs=41.9
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCC---CCcccc-----CChHHHHHHHHh
Q 048053 7 YDGRGMKKGAWSKEEDDKLRAYILKYGHW---NWAQLP-----KSGKSCRLRWMN 53 (75)
Q Consensus 7 ~~~~~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia-----rt~~qcr~Rw~~ 53 (75)
...+...+++||+|||++|+.+|..||.+ +|..|| ||+.||+.||..
T Consensus 5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~ 59 (60)
T d2cqra1 5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL 59 (60)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence 36678889999999999999999999975 499999 499999999974
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]
Probab=99.46 E-value=2e-14 Score=77.29 Aligned_cols=40 Identities=15% Similarity=0.415 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC---Ccccc-----CChHHHHHHHHhh
Q 048053 15 GAWSKEEDDKLRAYILKYGHWN---WAQLP-----KSGKSCRLRWMNY 54 (75)
Q Consensus 15 ~~Wt~eED~~L~~~v~~~g~~~---W~~Ia-----rt~~qcr~Rw~~~ 54 (75)
.+||+|||++|+.+|..||.+. |..|| ||+.||++||..+
T Consensus 2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L 49 (63)
T d2cjja1 2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 49 (63)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4899999999999999999754 99999 5999999999643
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.6e-12 Score=69.88 Aligned_cols=42 Identities=29% Similarity=0.443 Sum_probs=38.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcC
Q 048053 14 KGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLR 56 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~ 56 (75)
..+||++||++|.+++..|| .+|..|| +|+.||+++|.++..
T Consensus 5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~kt~~q~~~~y~~~~k 51 (65)
T d2iw5b1 5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 51 (65)
T ss_dssp CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999 5999999 499999999998754
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=3.9e-12 Score=68.91 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=39.8
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhc
Q 048053 9 GRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL 55 (75)
Q Consensus 9 ~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L 55 (75)
++.....+||+|||++|+.++..|| .+|..|| ||..||+++|....
T Consensus 12 ~~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~rt~~q~~~~yy~~k 62 (68)
T d1xc5a1 12 KDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLTK 62 (68)
T ss_dssp TSTTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3445668899999999999999999 5999999 49999999997653
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=3.5e-11 Score=69.05 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=41.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCC--Ccccc-----CChHHHHHHHHhhc
Q 048053 8 DGRGMKKGAWSKEEDDKLRAYILKYGHWN--WAQLP-----KSGKSCRLRWMNYL 55 (75)
Q Consensus 8 ~~~~~~k~~Wt~eED~~L~~~v~~~g~~~--W~~Ia-----rt~~qcr~Rw~~~L 55 (75)
.+++.....||.|||..|+..++++|... |..|| |++.||++||...+
T Consensus 27 ~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm 81 (95)
T d1ug2a_ 27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred CCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44566788999999999999999999633 99999 49999999998765
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=9.3e-07 Score=46.29 Aligned_cols=42 Identities=14% Similarity=0.337 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CCCcccc----CChHHHHHHHHhhcC
Q 048053 15 GAWSKEEDDKLRAYILKYGH---WNWAQLP----KSGKSCRLRWMNYLR 56 (75)
Q Consensus 15 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia----rt~~qcr~Rw~~~L~ 56 (75)
+.||.+|+..|..++.+|.. ..|..|| +|..+|..||..+-+
T Consensus 2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vgkt~~ev~~~~k~l~e 50 (59)
T d2cqqa1 2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKD 50 (59)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57999999999999999964 3599999 499999999986543
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.13 E-value=9e-07 Score=45.85 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccC------ChHHHHHHHHhh
Q 048053 15 GAWSKEEDDKLRAYILKYGHWNWAQLPK------SGKSCRLRWMNY 54 (75)
Q Consensus 15 ~~Wt~eED~~L~~~v~~~g~~~W~~Iar------t~~qcr~Rw~~~ 54 (75)
..||+||-.++.+++..|| .+|..|++ |..||.+.|...
T Consensus 2 d~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~~ 46 (57)
T d2crga1 2 EEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYMW 46 (57)
T ss_dssp CCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3699999999999999999 59999983 999999988654
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=6.6e-06 Score=42.91 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=33.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC--------CCccccC------ChHHHHHHHHhhcC
Q 048053 14 KGAWSKEEDDKLRAYILKYGHW--------NWAQLPK------SGKSCRLRWMNYLR 56 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~--------~W~~Iar------t~~qcr~Rw~~~L~ 56 (75)
+.+||.+||+.|+..|..+... -|..+++ |..+-|+||...|.
T Consensus 2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~ 58 (59)
T d1fexa_ 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence 5699999999999999998431 2555541 77788899988774
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.14 E-value=0.0004 Score=36.37 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=32.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCc---ccc-------CChHHHHHHHHhh
Q 048053 12 MKKGAWSKEEDDKLRAYILKYGHWNWA---QLP-------KSGKSCRLRWMNY 54 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g~~~W~---~Ia-------rt~~qcr~Rw~~~ 54 (75)
..+-.||+||-++.+.+|+.+|. +|. .|. .|..||+.+-+.|
T Consensus 5 k~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKY 56 (64)
T d1irza_ 5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 35668999999999999999995 553 442 2888998776654
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
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class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.60 E-value=0.0017 Score=31.66 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=31.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccc--------CChHHHHHHHHh
Q 048053 14 KGAWSKEEDDKLRAYILKYGHWNWAQLP--------KSGKSCRLRWMN 53 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia--------rt~~qcr~Rw~~ 53 (75)
+..||.||=.-|...|+.+| +.|..|- |+.-.....|..
T Consensus 1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~ 47 (49)
T d1x58a1 1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR 47 (49)
T ss_dssp SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence 35799999999999999999 6999886 466666666654
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.00055 Score=34.94 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=16.3
Q ss_pred CCCCCCCCCCHHHHHHHhcC
Q 048053 56 RPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 56 ~~~~~~~~wt~eEd~~L~~l 75 (75)
.+...+++||++||.+|+++
T Consensus 7 ~~~~~~~~WT~eEd~~L~~~ 26 (60)
T d2cqra1 7 RARSAEEPWTQNQQKLLELA 26 (60)
T ss_dssp TTTCSSCCCCHHHHHHHHHH
T ss_pred cCCcCCCCcCHHHHHHHHHH
Confidence 45667789999999999863
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.024 Score=29.84 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=39.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCC---CCCcccc-----CChHHHHHHHHhhcCCC
Q 048053 11 GMKKGAWSKEEDDKLRAYILKYGH---WNWAQLP-----KSGKSCRLRWMNYLRPD 58 (75)
Q Consensus 11 ~~~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----rt~~qcr~Rw~~~L~~~ 58 (75)
...-+.|+++|=++|-.++..... +=|..|| ||+..|...|+..+...
T Consensus 5 ~t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~ 60 (73)
T d1wgxa_ 5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred cCcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccc
Confidence 345679999999999999997754 4499998 69999999999876553
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.07 E-value=0.018 Score=33.59 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=35.1
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCC---Ccccc-----------------CChHHHHHHHHhhc
Q 048053 10 RGMKKGAWSKEEDDKLRAYILKYGHWN---WAQLP-----------------KSGKSCRLRWMNYL 55 (75)
Q Consensus 10 ~~~~k~~Wt~eED~~L~~~v~~~g~~~---W~~Ia-----------------rt~~qcr~Rw~~~L 55 (75)
++.++..+|.|||..|+-++.+||.++ |..|- ||+..+..|=...|
T Consensus 45 ~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi 110 (128)
T d1ofcx2 45 GNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 110 (128)
T ss_dssp TTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred cccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHH
Confidence 344555799999999999999999988 76664 37777777665544
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.01 E-value=0.0003 Score=38.76 Aligned_cols=28 Identities=11% Similarity=-0.116 Sum_probs=23.1
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048053 3 RAPTYDGRGMKKGAWSKEEDDKLRAYIL 30 (75)
Q Consensus 3 r~~~~~~~~~~k~~Wt~eED~~L~~~v~ 30 (75)
|+..+++|.+++++||++||+.|+....
T Consensus 47 Rw~~~L~p~l~~~~~t~~ed~ll~d~~~ 74 (86)
T d1igna1 47 RFRVYLSKRLEYVYEVDKFGKLVRDDDG 74 (86)
T ss_dssp HHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred HHHHHcCccccCCCCCCchhHHHHHHhh
Confidence 4556899999999999999998876543
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.83 E-value=0.028 Score=31.15 Aligned_cols=26 Identities=12% Similarity=-0.088 Sum_probs=18.7
Q ss_pred HHHHhhcCCCCCCCCCCHHHHHHHhc
Q 048053 49 LRWMNYLRPDIKHGNYTKEEETKRKR 74 (75)
Q Consensus 49 ~Rw~~~L~~~~~~~~wt~eEd~~L~~ 74 (75)
..+.+..++......||.|||.+||+
T Consensus 21 A~n~~~~s~G~~~~~WTrEEDriIL~ 46 (95)
T d1ug2a_ 21 ANNSKVSSTGEKVVLWTREADRVILT 46 (95)
T ss_dssp CCCCCCCCCCCCCSSSCHHHHHHHHH
T ss_pred cccCccCCCCCccCCcCHHHHHHHHH
Confidence 33444455566677899999999985
