Citrus Sinensis ID: 048146

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
MKDNTNEEIMESQNQLQQPQQRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAVDGVGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMLIVGILLIGALAAVVGTYTSLKQIVTHL
ccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHEEEEcccccccccHHHHHHHHHccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccccccccccccccccccccccccccHHHHHHHHHHHEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccEEEHHHHHHHHHHHHEEEEEEccHHHHHHcccccccccccccccccEEEEEEEEEEEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MKDNTNEEIMESQnqlqqpqqrsegtTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRrcmdanpliktypdigdlafgckGRAMVSILMYLELYFVAVEFLILegdnleklfpnfgfiisglkiggkQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGavdgvglptAVSLYTFcycghsvfptlcnsmkdRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPiataledtphlrksrpisILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMLIVGILLIGALAAVVGTYTSLKQIVTHL
MKDNTNEEIMEsqnqlqqpqqrSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAVDGVGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIAtaledtphlrksrpiSILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMLIVGILLIGALAAVVGTYTSLKQIVTHL
MKDNTNEEIMESqnqlqqpqqRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAVDGVGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMlivgilligalaavvgTYTSLKQIVTHL
***************************FLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAVDGVGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMLIVGILLIGALAAVVGTYTSLKQIV***
******************************TCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAVDGVGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMLIVGILLIGALAAVVGTYTSLKQIVTHL
************************GTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAVDGVGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMLIVGILLIGALAAVVGTYTSLKQIVTHL
**********************SEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAVDGVGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMLIVGILLIGALAAVVGTYTSLKQIVTHL
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKDNTNEEIMESQNQLQQPQQRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAVDGVGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLELMLIVGILLIGALAAVVGTYTSLKQIVTHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query401 2.2.26 [Sep-21-2011]
P47082602 Vacuolar amino acid trans yes no 0.880 0.586 0.279 3e-35
P34579486 Vesicular GABA transporte yes no 0.932 0.769 0.244 8e-23
Q6PF45518 Vesicular inhibitory amin N/A no 0.937 0.725 0.231 1e-20
Q6DIV6518 Vesicular inhibitory amin yes no 0.875 0.677 0.233 7e-20
Q4KL91522 Proton-coupled amino acid N/A no 0.952 0.731 0.266 5e-19
Q9H598525 Vesicular inhibitory amin yes no 0.875 0.668 0.240 5e-18
O35633525 Vesicular inhibitory amin yes no 0.875 0.668 0.235 6e-18
Q95KE2525 Vesicular inhibitory amin N/A no 0.877 0.670 0.235 6e-18
O35458525 Vesicular inhibitory amin yes no 0.875 0.668 0.240 7e-18
O22719451 Lysine histidine transpor no no 0.940 0.835 0.224 2e-14
>sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  149 bits (377), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 204/404 (50%), Gaps = 51/404 (12%)

Query: 26  TTFLRTCLNGLNVVSGVGILSIPYALSQGGW---LSLIILFLVAVLCWYTGLLLRRCMDA 82
           +T  +T  N +NV+ G+G+L++P  L   GW   L+++ +F +A  C  T  LL RC+D 
Sbjct: 208 STAPQTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFC--TAELLSRCLDT 265

Query: 83  NPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGL 142
           +P + +Y D+G  AFG KGRA++S L  L+L    V  +IL GD+L  LFP +       
Sbjct: 266 DPTLISYADLGYAAFGTKGRALISALFTLDLLGSGVSLVILFGDSLNALFPQYSTTF--F 323

Query: 143 KIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGA--------- 193
           KI     F ++T  +  P + L ++ +L  +S  G +  + +  C L+  +         
Sbjct: 324 KI---VSFFIVTPPVFIPLSVLSNISLLGILSTTGTV--LVICCCGLYKSSSPGSLVNPM 378

Query: 194 ------VDGVGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSM 247
                 +D   L  ++ L + C+ GH+VFP L   M+   +F   L   + I++      
Sbjct: 379 ETSMWPIDLKHLCLSIGLLSACWGGHAVFPNLKTDMRHPDKFKDCLKTTYKITSVTDIGT 438

Query: 248 AILGYLMYGDHLKSQVTLNLPIRKISSK-----LAIYTTLINPLTKYAVIITPIATALE- 301
           A++G+LM+G+ +K ++T N+ + +   K     ++   T+I P+ K  +   PI + L+ 
Sbjct: 439 AVIGFLMFGNLVKDEITKNVLLTEGYPKFVYGLISALMTII-PIAKTPLNARPIVSVLDV 497

Query: 302 --DTPHL---------RKSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVS 350
             +  H+         R ++ + +  R  + +  V++AI  P F  ++AF G+ L  T+ 
Sbjct: 498 LMNVQHIDEAASAIKRRAAKGLQVFNRIFINVVFVLIAINFPEFDKIIAFLGAGLCFTIC 557

Query: 351 ILLPCLCYLRINKTA----RRFGLELMLIVGILL--IGALAAVV 388
           ++LPC  YLR+ KT      R    + + + ++L  +G  AA++
Sbjct: 558 LILPCWFYLRLCKTTIKPWERVACHVTICISVVLSTLGVGAAII 601
Required for the vacuolar uptake of large neutral amino acids including tyrosine, glutamine, asparagine, isoleucine and leucine. Requires ATP for function.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|P34579|UNC47_CAEEL Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2 Back     alignment and function description
>sp|Q6PF45|VIAAT_XENLA Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q6DIV6|VIAAT_XENTR Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1 Back     alignment and function description
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2 Back     alignment and function description
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter OS=Mus musculus GN=Slc32a1 PE=1 SV=3 Back     alignment and function description
>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter OS=Macaca fascicularis GN=SLC32A1 PE=2 SV=1 Back     alignment and function description
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus GN=Slc32a1 PE=1 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
224098876412 amino acid transporter [Populus trichoca 0.975 0.949 0.751 1e-169
224112271412 amino acid transporter [Populus trichoca 0.990 0.963 0.739 1e-168
255562864492 amino acid transporter, putative [Ricinu 0.947 0.772 0.734 1e-167
359473359411 PREDICTED: vacuolar amino acid transport 0.980 0.956 0.714 1e-166
255562866401 amino acid transporter, putative [Ricinu 0.930 0.930 0.710 1e-158
356577245407 PREDICTED: vacuolar amino acid transport 0.975 0.960 0.606 1e-144
413944136399 hypothetical protein ZEAMMB73_600029 [Ze 0.955 0.959 0.583 1e-132
449435344422 PREDICTED: vacuolar amino acid transport 0.977 0.928 0.619 1e-131
449478672422 PREDICTED: LOW QUALITY PROTEIN: vacuolar 0.977 0.928 0.619 1e-131
115458778455 Os04g0460300 [Oryza sativa Japonica Grou 0.977 0.861 0.585 1e-130
>gi|224098876|ref|XP_002311301.1| amino acid transporter [Populus trichocarpa] gi|222851121|gb|EEE88668.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 303/403 (75%), Positives = 347/403 (86%), Gaps = 12/403 (2%)

Query: 11  ESQNQLQQPQQRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCW 70
           ES NQL  P++   GTTFLRTC NGLN +SGVGILSIPYALSQGGWLSLI+LF+VAVLCW
Sbjct: 10  ESHNQLPLPEEPHIGTTFLRTCFNGLNALSGVGILSIPYALSQGGWLSLILLFVVAVLCW 69

Query: 71  YTGLLLRRCMDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEK 130
           YTGLLLRRCMD++PLI++YPDIG+ AFGCKGRA+VS+ MYLELY VAVEFLILEGDNL K
Sbjct: 70  YTGLLLRRCMDSDPLIRSYPDIGEKAFGCKGRALVSVFMYLELYLVAVEFLILEGDNLYK 129

Query: 131 LFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLW 190
           LFPN GF ++GL IGGK GFVLLTAL+I PTTWL+SLG+LAYVSAGGV AS+ LV CV W
Sbjct: 130 LFPNAGFKLAGLYIGGKTGFVLLTALVILPTTWLKSLGMLAYVSAGGVSASVILVGCVWW 189

Query: 191 VGAVDGVG------------LPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFI 238
           VGAVDGVG            LPT +SL+TFCYCGH+VFPTLCNSMKDR QFSKVL  CF+
Sbjct: 190 VGAVDGVGFHEDGVLLNWGGLPTTLSLFTFCYCGHAVFPTLCNSMKDRSQFSKVLLICFV 249

Query: 239 ISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIAT 298
            ST  YGSMA+LGYLMYG++LKSQVTLNLPIRK+ SKLAIYTTL+NPLTKYAVI  PIAT
Sbjct: 250 TSTITYGSMAVLGYLMYGEYLKSQVTLNLPIRKMGSKLAIYTTLVNPLTKYAVITAPIAT 309

Query: 299 ALEDTPHLRKSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCY 358
           A+E+T   R SR +SILVRTV+VISTV+VA+TIPFFGYV+AF G+FL VTVS+LLPCLCY
Sbjct: 310 AIEETFVFRDSRYLSILVRTVIVISTVVVALTIPFFGYVMAFIGAFLSVTVSMLLPCLCY 369

Query: 359 LRINKTARRFGLELMLIVGILLIGALAAVVGTYTSLKQIVTHL 401
           LRI+K+AR FGLEL+ IVGIL+IG+   ++GTYTS+KQIV HL
Sbjct: 370 LRIDKSARSFGLELVFIVGILIIGSFVGIIGTYTSIKQIVKHL 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112271|ref|XP_002316138.1| amino acid transporter [Populus trichocarpa] gi|222865178|gb|EEF02309.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255562864|ref|XP_002522437.1| amino acid transporter, putative [Ricinus communis] gi|223538322|gb|EEF39929.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359473359|ref|XP_002269735.2| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] gi|296086363|emb|CBI31952.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255562866|ref|XP_002522438.1| amino acid transporter, putative [Ricinus communis] gi|223538323|gb|EEF39930.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356577245|ref|XP_003556738.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|413944136|gb|AFW76785.1| hypothetical protein ZEAMMB73_600029 [Zea mays] Back     alignment and taxonomy information
>gi|449435344|ref|XP_004135455.1| PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449478672|ref|XP_004155387.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|115458778|ref|NP_001052989.1| Os04g0460300 [Oryza sativa Japonica Group] gi|38344962|emb|CAD40982.2| OSJNBa0072F16.7 [Oryza sativa Japonica Group] gi|113564560|dbj|BAF14903.1| Os04g0460300 [Oryza sativa Japonica Group] gi|215741142|dbj|BAG97637.1| unnamed protein product [Oryza sativa Japonica Group] gi|218194977|gb|EEC77404.1| hypothetical protein OsI_16168 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
TAIR|locus:2087012405 AT3G28960 "AT3G28960" [Arabido 0.930 0.920 0.493 1.9e-99
TAIR|locus:2150911423 AT5G15240 [Arabidopsis thalian 0.927 0.879 0.503 2.4e-99
TAIR|locus:2056118550 AT2G39130 [Arabidopsis thalian 0.940 0.685 0.446 1.4e-87
TAIR|locus:2185158550 AT5G02180 [Arabidopsis thalian 0.840 0.612 0.474 2e-86
TAIR|locus:2185143526 AT5G02170 [Arabidopsis thalian 0.840 0.640 0.458 8.9e-86
TAIR|locus:2063255536 AT2G41190 [Arabidopsis thalian 0.925 0.692 0.415 2e-81
TAIR|locus:2083549528 AT3G09340 "AT3G09340" [Arabido 0.840 0.638 0.440 1.8e-80
TAIR|locus:2083529524 AT3G09330 "AT3G09330" [Arabido 0.840 0.643 0.437 7.6e-80
TAIR|locus:2082652546 AT3G54830 "AT3G54830" [Arabido 0.665 0.489 0.512 4.5e-75
TAIR|locus:2149045426 AT5G16740 [Arabidopsis thalian 0.837 0.788 0.357 7.5e-57
TAIR|locus:2087012 AT3G28960 "AT3G28960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
 Identities = 191/387 (49%), Positives = 259/387 (66%)

Query:    26 TTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPL 85
             ++F +TC N LN +SG+GILS+PY+L++GGWLSL +L L+AV  +YT LL+ +CM+A+  
Sbjct:    16 SSFFKTCFNALNALSGIGILSVPYSLARGGWLSLSLLLLLAVTAFYTSLLITKCMNADRN 75

Query:    86 IKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIG 145
             IKTYPDIG+ AFG  GR +VS+ M+LELY V   FLILEGDNL  LFP F   + GL++ 
Sbjct:    76 IKTYPDIGERAFGRPGRIIVSVFMHLELYLVTTGFLILEGDNLHNLFPGFTIEMIGLRLN 135

Query:   146 GKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVLWVGAVDGVG------- 198
             GKQ F+   A +I PT W  +L +L+YVS  GVLA+   +  + W+GA DG+G       
Sbjct:   136 GKQAFMATVAFVIMPTLWWDNLSVLSYVSMSGVLATTVTLGSISWIGAFDGIGFHQKGKL 195

Query:   199 -----LPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFSKVLAACFIISTANYGSMAILGYL 253
                  +PTA+SLY FCY  H V PTL +SMK + QF+ VL  CFI+ T  Y SMA+LGYL
Sbjct:   196 INWSGIPTALSLYAFCYGAHPVLPTLYSSMKSKHQFNNVLLICFILCTIGYTSMAVLGYL 255

Query:   254 MYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLRKSRP-- 311
             MYG    SQ+TLNLPI K SSK+AIYTTL+NP+ KYA++ITP    ++D    R S+   
Sbjct:   256 MYGSQTLSQITLNLPIHKTSSKVAIYTTLVNPVAKYALMITPTVNTIKDWFPSRYSKKAY 315

Query:   312 ISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTARRFGLE 371
             + +L+ T  +IS+V++A T+PFFGY+++  G+ L VTVSILLPCLCYL+I    ++ G E
Sbjct:   316 LHLLISTFFIISSVVIAETLPFFGYMMSLVGALLSVTVSILLPCLCYLKIFGNYKKIGCE 375

Query:   372 LMXXXXXXXXXXXXXXXXTYTSLKQIV 398
              +                TY +L+ I+
Sbjct:   376 TIMLFGMVVMSVFVGVIGTYIALRDII 402
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2150911 AT5G15240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056118 AT2G39130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185158 AT5G02180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185143 AT5G02170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063255 AT2G41190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083549 AT3G09340 "AT3G09340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083529 AT3G09330 "AT3G09330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082652 AT3G54830 "AT3G54830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149045 AT5G16740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00080799
amino acid transporter (412 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 4e-49
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 8e-16
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 0.001
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  170 bits (434), Expect = 4e-49
 Identities = 110/405 (27%), Positives = 192/405 (47%), Gaps = 42/405 (10%)

Query: 25  GTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRC---- 79
             +  +   N +  + G G+LS+PYA  Q GW+  LI+L +V ++  YT  LL +C    
Sbjct: 2   TISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYV 61

Query: 80  -MDANPLIKTYPDIGDLAFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFI 138
                   K+Y D+G   FG KG+ ++   + + L+ V + +LI  GDNL  +F +F   
Sbjct: 62  DKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSF--- 118

Query: 139 ISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLASITLVACVL--------- 189
                      F+++  LI  P +++ +L  L+ +S    ++S+ +V  VL         
Sbjct: 119 -FDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLT 177

Query: 190 -----WVGAVDG---VGLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFS---KVLAACFI 238
                 +GA        L  A+ +  F + GH+V   + N+MK   +F    KVL    I
Sbjct: 178 AQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAII 237

Query: 239 ISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIAT 298
           I T  Y  + ++GYL +G+++K  + LNLP       +A    +++ L  Y +   PI  
Sbjct: 238 IVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQ 297

Query: 299 ALE--------DTPHLRKSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVS 350
            +E           H  KS+ + +++R+ LV+ T ++AI++PF G  L+  G+  G  ++
Sbjct: 298 IVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLT 357

Query: 351 ILLPCLCYLRINKT----ARRFGLELMLIVGILLIGALAAVVGTY 391
            +LP L +L++ KT      +     +L V  ++IG L    G  
Sbjct: 358 FILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVA 402

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 401
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.97
PRK10483414 tryptophan permease; Provisional 99.97
PRK09664415 tryptophan permease TnaB; Provisional 99.96
PRK15132403 tyrosine transporter TyrP; Provisional 99.96
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.95
PRK13629443 threonine/serine transporter TdcC; Provisional 99.92
TIGR00814397 stp serine transporter. The HAAAP family includes 99.91
PRK10655438 potE putrescine transporter; Provisional 99.77
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.73
PRK10644445 arginine:agmatin antiporter; Provisional 99.72
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.7
TIGR00909429 2A0306 amino acid transporter. 99.69
PRK10249458 phenylalanine transporter; Provisional 99.69
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.69
PRK11387471 S-methylmethionine transporter; Provisional 99.68
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.68
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.68
PRK15049499 L-asparagine permease; Provisional 99.67
PRK11021410 putative transporter; Provisional 99.67
TIGR00930 953 2a30 K-Cl cotransporter. 99.66
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.65
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.64
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.64
PRK10746461 putative transport protein YifK; Provisional 99.63
PRK10238456 aromatic amino acid transporter; Provisional 99.63
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.62
PRK10580457 proY putative proline-specific permease; Provision 99.62
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.62
PRK10836489 lysine transporter; Provisional 99.6
TIGR00911501 2A0308 L-type amino acid transporter. 99.59
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.59
TIGR00913478 2A0310 amino acid permease (yeast). 99.59
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.58
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.54
COG0531466 PotE Amino acid transporters [Amino acid transport 99.43
PF03845320 Spore_permease: Spore germination protein; InterPr 99.41
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.39
COG0833 541 LysP Amino acid transporters [Amino acid transport 99.39
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.36
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.33
PRK15238496 inner membrane transporter YjeM; Provisional 99.31
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.28
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.21
KOG3832319 consensus Predicted amino acid transporter [Genera 98.93
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.9
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.84
COG3949349 Uncharacterized membrane protein [Function unknown 98.74
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.61
COG1457442 CodB Purine-cytosine permease and related proteins 98.51
PRK11375484 allantoin permease; Provisional 98.47
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.44
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.22
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.17
PRK11017404 codB cytosine permease; Provisional 98.13
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 98.07
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.03
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.02
TIGR00813407 sss transporter, SSS family. have different number 98.01
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.93
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 97.85
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.78
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.77
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.71
PRK12488 549 acetate permease; Provisional 97.62
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.38
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 97.32
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.22
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 97.18
PRK00701439 manganese transport protein MntH; Reviewed 97.16
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.1
PRK10484 523 putative transporter; Provisional 96.99
PRK09395 551 actP acetate permease; Provisional 96.94
PRK15015 701 carbon starvation protein A; Provisional 96.9
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 96.88
PRK15419502 proline:sodium symporter PutP; Provisional 96.81
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 96.41
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.37
PHA02764399 hypothetical protein; Provisional 96.16
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.15
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 95.96
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 95.23
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.97
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 94.66
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.21
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.08
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 93.32
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 91.64
PRK15433439 branched-chain amino acid transport system 2 carri 88.67
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 84.56
COG4147529 DhlC Predicted symporter [General function predict 84.24
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-56  Score=419.55  Aligned_cols=371  Identities=24%  Similarity=0.362  Sum_probs=332.7

Q ss_pred             cCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh-----CCCCCChHHHHH
Q 048146           21 QRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWL-SLIILFLVAVLCWYTGLLLRRCMDA-----NPLIKTYPDIGD   94 (401)
Q Consensus        21 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~-gii~~~~~~~~~~~s~~~l~~~~~~-----~~~~~~y~~~~~   94 (401)
                      +.++..|..++..|+.+.++|+|+|++|++|+++|++ |.+...++++++.||++.+++|.++     .....+|++.++
T Consensus        42 ~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~  121 (449)
T KOG1304|consen   42 DREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE  121 (449)
T ss_pred             cCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence            3456799999999999999999999999999999998 9999999999999999999999765     123457777766


Q ss_pred             H----------hcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcc
Q 048146           95 L----------AFGCKGRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWL  164 (401)
Q Consensus        95 ~----------~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~  164 (401)
                      .          -+|+++|.+++++++++++|.|++|+++++++++++++.....     ..+.+.++.+..+..+|+++.
T Consensus       122 ~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~-----~~s~~~~i~~~~~~~lll~~I  196 (449)
T KOG1304|consen  122 SAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPG-----VLSVRLYILIQLPPLLLLNLI  196 (449)
T ss_pred             HHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCC-----CccHHHHHHHHHHHHHHHHHH
Confidence            4          4578899999999999999999999999999999999833221     123578888899999999999


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHHhhhccccC------------Cchhhhhhhhhhccccccccchhhhccccchhh--
Q 048146          165 RSLGILAYVSAGGVLASITLVACVLWVGAVDGV------------GLPTAVSLYTFCYCGHSVFPTLCNSMKDRRQFS--  230 (401)
Q Consensus       165 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~--  230 (401)
                      ||+|.++.+|.++.++.+..+..+.++...+..            +++..+|+.+|||+|+.++.|++++||+|++++  
T Consensus       197 r~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~  276 (449)
T KOG1304|consen  197 RNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGP  276 (449)
T ss_pred             HhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCc
Confidence            999999999999999999988888777654422            278899999999999999999999999999999  


Q ss_pred             -HHHHHHHHHHHHHHHHHHhHHHhhhcccchhhhHhccCCcchhhHHHHHHHHHhhhhhhhhhHhhHHHHHhccCCCC--
Q 048146          231 -KVLAACFIISTANYGSMAILGYLMYGDHLKSQVTLNLPIRKISSKLAIYTTLINPLTKYAVIITPIATALEDTPHLR--  307 (401)
Q Consensus       231 -~~~~~~~~i~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~--  307 (401)
                       +++..++.++.++|..+|++||++|||++++.+++|+|+ ++.....++++++.+..+||++++|..+.+|+.+.++  
T Consensus       277 ~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~  355 (449)
T KOG1304|consen  277 FGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFS  355 (449)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcC
Confidence             999999999999999999999999999999999999999 7777888999999999999999999999999976544  


Q ss_pred             --CCCCchhhhHHHHHHHHHHHHhhccchhHHHHhhhhhhHHHHHHhhhhhhHHhhhcccc--cchhHHHHHHHHHHHhh
Q 048146          308 --KSRPISILVRTVLVISTVIVAITIPFFGYVLAFTGSFLGVTVSILLPCLCYLRINKTAR--RFGLELMLIVGILLIGA  383 (401)
Q Consensus       308 --~~~~~~~~~~~~~~~~~~~~a~~~p~~~~i~~l~G~~~~~~~~~ilP~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~  383 (401)
                        ++++..+.+|.+++++++.+|..+||++.+++++|+++++.+.+++|++++++.+++++  ..+|+++.+..++++|+
T Consensus       356 ~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~  435 (449)
T KOG1304|consen  356 ENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGV  435 (449)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHH
Confidence              33456789999999999999999999999999999999999999999999999988874  45789999999999999


Q ss_pred             HHhhHhhHHHHHHH
Q 048146          384 LAAVVGTYTSLKQI  397 (401)
Q Consensus       384 ~~~v~g~~~~i~~l  397 (401)
                      +.++.|||.++.++
T Consensus       436 ~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  436 FGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHhhhhhcC
Confidence            99999999999864

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.1 bits (129), Expect = 6e-08
 Identities = 52/412 (12%), Positives = 109/412 (26%), Gaps = 132/412 (32%)

Query: 2   KDNTNEEIMESQNQL-----QQPQQRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGW 56
             N+ E ++E   +L          RS+ ++ ++  ++ +       + S PY       
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE------ 244

Query: 57  LSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCK------GRAMVSILMY 110
             L++L  V            +  +A                CK       + +   L  
Sbjct: 245 NCLLVLLNV----QN-----AKAWNA------------FNLSCKILLTTRFKQVTDFLSA 283

Query: 111 LELYFVAVEFLI--LEGDNLEKLFPNF-GFIISGLKIGGKQGFVLLTALI-----IWPTT 162
                ++++     L  D ++ L   +       L            ++I         T
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 163 WLR---------------SLGIL-------AYVSAGGVL---ASITL-VACVLWVGAVDG 196
           W                 SL +L        +     V    A I   +  ++W   +  
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKS 402

Query: 197 VGLPTAVSLYTFC----------YCGHSVFPTLCNSMKDRRQFSKVLAACFIISTA---- 242
             +     L+ +               S++  L   +++     + +   + I       
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 243 --------NYGSMAILGYLMYGDHLK-----------SQVTLNL-----PIRKISSKLAI 278
                    Y       ++ +  HLK             V L+       IR  S+    
Sbjct: 463 DLIPPYLDQY----FYSHIGH--HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 279 YTTLINPLT---KYAVIIT---PIATALEDT---------PHLRKSRPISIL 315
             +++N L     Y   I    P    L +           +L  S+   +L
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.82
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.73
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.61
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.97
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 97.92
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.46
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.14
4ain_A539 Glycine betaine transporter BETP; membrane protein 85.14
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.82  E-value=1.8e-17  Score=162.04  Aligned_cols=231  Identities=11%  Similarity=0.107  Sum_probs=177.1

Q ss_pred             cCCCCchhHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcccc
Q 048146           21 QRSEGTTFLRTCLNGLNVVSGVGILSIPYALSQGGWLSLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLAFGCK  100 (401)
Q Consensus        21 ~~~~~~s~~~~~~~l~~~~iG~Gil~LP~~~~~~G~~gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~~G~~  100 (401)
                      +++|+.+.++.....+++++|+|++.+|....+.|..+++.+++.++........+.|...+.|+..+..+.+++.+||+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~   84 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPF   84 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCCh
Confidence            46678999999999999999999999999888888778888889999999999999999999999889999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccccCchhHHHHHHHHHH
Q 048146          101 GRAMVSILMYLELYFVAVEFLILEGDNLEKLFPNFGFIISGLKIGGKQGFVLLTALIIWPTTWLRSLGILAYVSAGGVLA  180 (401)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~  180 (401)
                      .+++..+..++.......++....++.++.+++....+     . ....+.++..++.. ....+..|...+++.+....
T Consensus        85 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~-~in~~g~~~~~~~~~~~~~~  157 (445)
T 3l1l_A           85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP-----W-VLTITCVVVLWIFV-LLNIVGPKMITRVQAVATVL  157 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSH-----H-HHHHHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccccc-----H-HHHHHHHHHHHHHH-HHHHhchHHHHHHHHHHHHH
Confidence            99999999999888888888888888887776542211     0 01122222222222 23356777777777766655


Q ss_pred             HHHHHHHHHhhhcc--cc---------------CCchhhhhhhhhhccccccccchhhhcccc-chhhHHHHHHHHHHHH
Q 048146          181 SITLVACVLWVGAV--DG---------------VGLPTAVSLYTFCYCGHSVFPTLCNSMKDR-RQFSKVLAACFIISTA  242 (401)
Q Consensus       181 ~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~i~~~  242 (401)
                      .+..++.++..+..  ++               .++..++....|+|.|.+......+|+||| |+.+|++..+..++.+
T Consensus       158 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~  237 (445)
T 3l1l_A          158 ALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAV  237 (445)
T ss_dssp             HHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHH
Confidence            55444433332211  00               125567888999999999999999999999 6799999999999999


Q ss_pred             HHHHHHhHHHhhhccc
Q 048146          243 NYGSMAILGYLMYGDH  258 (401)
Q Consensus       243 ~y~~~g~~gy~~fg~~  258 (401)
                      +|+..........+.+
T Consensus       238 ~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          238 CYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             HHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHhcCCHH
Confidence            9999988877776643
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 97.27
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.27  E-value=0.078  Score=49.60  Aligned_cols=103  Identities=20%  Similarity=0.190  Sum_probs=63.7

Q ss_pred             CCCchhHHHHHHHHHhhhhhhh-chhHHHHHh-hcHH----HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHh
Q 048146           23 SEGTTFLRTCLNGLNVVSGVGI-LSIPYALSQ-GGWL----SLIILFLVAVLCWYTGLLLRRCMDANPLIKTYPDIGDLA   96 (401)
Q Consensus        23 ~~~~s~~~~~~~l~~~~iG~Gi-l~LP~~~~~-~G~~----gii~~~~~~~~~~~s~~~l~~~~~~~~~~~~y~~~~~~~   96 (401)
                      ++-.+..+-++..++..+|.|= .-.|+-..+ .|..    =.+.+++++.=..+.-..+.|..++. ..+.+..+....
T Consensus         2 ~~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g-~i~~~~~i~~~~   80 (509)
T d2a65a1           2 EHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQ-GHGTTPAIFYLL   80 (509)
T ss_dssp             CCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-TCCSHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-cccHHHHHHHHh
Confidence            3446788899999999999986 458987655 4532    33444444444445555666665553 677888888776


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 048146           97 FGCKGRAMVSILMYLELYFVAVEFLILEGD  126 (401)
Q Consensus        97 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~  126 (401)
                      .+.+.-....+......+..++-|....+-
T Consensus        81 ~~~~~~~giG~~~~~~~~~i~~yy~vi~~w  110 (509)
T d2a65a1          81 WRNRFAKILGVFGLWIPLVVAIYYVYIESW  110 (509)
T ss_dssp             SCSHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            665443444444455555555555554444