Citrus Sinensis ID: 048207
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | 2.2.26 [Sep-21-2011] | |||||||
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.978 | 0.894 | 0.715 | 0.0 | |
| Q8L7R8 | 514 | Sugar transport protein 3 | yes | no | 0.959 | 0.869 | 0.636 | 1e-158 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.972 | 0.866 | 0.545 | 1e-145 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.987 | 0.889 | 0.524 | 1e-144 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.972 | 0.867 | 0.539 | 1e-144 | |
| Q39228 | 514 | Sugar transport protein 4 | no | no | 0.969 | 0.879 | 0.555 | 1e-142 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.980 | 0.890 | 0.517 | 1e-142 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.989 | 0.876 | 0.523 | 1e-140 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.982 | 0.891 | 0.515 | 1e-140 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.972 | 0.881 | 0.532 | 1e-139 |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/460 (71%), Positives = 396/460 (86%), Gaps = 4/460 (0%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSM+PFLKKFFP+V RKM+EDT++S+YCKFDSQLLTS TSSLY+ G++AS ASSVTR
Sbjct: 45 GVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTR 104
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
A G K SIL+GG FLA +ALGG+A N+YMLIFGR+LLGVG+ F NQ+VPLYLSEMAPP+
Sbjct: 105 AFGRKPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPR 164
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA N GFQ V G LSANL+NYGT+KI+GGWGW+ISLAMAA PA+ILT G+LFLPET
Sbjct: 165 YRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPET 224
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+IQR+NDH++A+ MLQRV GT DVQAEL+DLI+AS S+ I HPFK I++RKYRPQL
Sbjct: 225 PNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQL 284
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
VMA+ IPFFQQVTG+N+I+FYAP+LFRTI L E+ SLL S++VTG +G+ S + M++ D
Sbjct: 285 VMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSASTFISMLIVD 343
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWG 360
KLGR+ LF+ GG+QM V+Q+M+GSIMAA+LGDHGG GYAY++L+LIC+Y AGFG+SWG
Sbjct: 344 KLGRRALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWG 403
Query: 361 PLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420
PLGWLVPSEIFPLEIRSAGQSI VAV LFT +VAQTFL+MLCHFK+G+FFFFGGW+ VM
Sbjct: 404 PLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVM 463
Query: 421 TTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGEES 460
T FVHF LPETK VPIE MD VWR+HWFW+K +GEE+
Sbjct: 464 TAFVHFLLPETKKVPIEKMDIVWRDHWFWKKI---IGEEA 500
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Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 558 bits (1437), Expect = e-158, Method: Compositional matrix adjust.
Identities = 291/457 (63%), Positives = 355/457 (77%), Gaps = 10/457 (2%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKV-----SDYCKFDSQLLTSLTSSLYITGILASLIA 55
GV SM PFLK+FFP+V + ED + + YC F+SQLLTS TSSLY++G++A+L+A
Sbjct: 47 GVMSMGPFLKRFFPKVYKLQEEDRRRRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLA 106
Query: 56 SSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSE 115
SSVTR+ G K SI +GGV+FLAG+ALGGSA N+ MLI RLLLGVG+ F NQSVPLYLSE
Sbjct: 107 SSVTRSWGRKPSIFLGGVSFLAGAALGGSAQNVAMLIIARLLLGVGVGFANQSVPLYLSE 166
Query: 116 MAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSL 175
MAP K RGA + GFQ+C+ G LSAN++NY TQ IK GW +ISLA AA PASILT+GSL
Sbjct: 167 MAPAKYRGAISNGFQLCIGIGFLSANVINYETQNIKHGW--RISLATAAIPASILTLGSL 224
Query: 176 FLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRK 235
FLPETPNSIIQ T D K E ML+RV GT DVQ EL DL+ ASS S ++ F K++QRK
Sbjct: 225 FLPETPNSIIQTTGDVHKTELMLRRVRGTNDVQDELTDLVEASSGSDTDSNAFLKLLQRK 284
Query: 236 YRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILP 295
YRP+LVMA++IPFFQQVTG+N+++FYAPVL+RT+ E+ SL MS LVTG +GT S +L
Sbjct: 285 YRPELVMALVIPFFQQVTGINVVAFYAPVLYRTVGFGESGSL-MSTLVTGIVGTSSTLLS 343
Query: 296 MILADKLGRKVLFLLGGIQMLVSQVMIGSI-MAAQLGDHGGFSIGYAYLILVLICVYKAG 354
M++ D++GRK LFL+GG+QMLVSQV IG I M A + D G GY Y ++VL+CVY AG
Sbjct: 344 MLVVDRIGRKTLFLIGGLQMLVSQVTIGVIVMVADVHD-GVIKEGYGYAVVVLVCVYVAG 402
Query: 355 FGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFG 414
FG+SWGPLGWLVPSEIFPLEIRS QS+TVAV +FT VAQ+ MLC F+AG+FFF+G
Sbjct: 403 FGWSWGPLGWLVPSEIFPLEIRSVAQSVTVAVSFVFTFAVAQSAPPMLCKFRAGIFFFYG 462
Query: 415 GWLTVMTTFVHFFLPETKNVPIELMDKVWREHWFWRK 451
GWL VMT V FLPETKNVPIE + +W +HWFWR+
Sbjct: 463 GWLVVMTVAVQLFLPETKNVPIEKVVGLWEKHWFWRR 499
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 514 bits (1323), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/458 (54%), Positives = 333/458 (72%), Gaps = 5/458 (1%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSM+ FLKKFFP V RK + D + YC++DSQ LT TSSLY+ ++ASL+AS++TR
Sbjct: 48 GVTSMDSFLKKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITR 107
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G K+S+L GGV F AG+ + G+A ++MLI GR+LLG GI F NQSVPLYLSEMAP K
Sbjct: 108 KFGRKLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYK 167
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA NIGFQ+ + GIL AN+LNY KIKGGWGW++SL A PA I+T+GSL LP+T
Sbjct: 168 YRGALNIGFQLSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDT 227
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+I+R H++A L+RV G DV E DL+ AS DSK + HP++ ++QRKYRP L
Sbjct: 228 PNSMIER-GQHEEARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHL 286
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
MAI IPFFQQ+TG+N+I FYAPVLF TI + + LMSA++TG + + ++ + D
Sbjct: 287 SMAIAIPFFQQLTGINVIMFYAPVLFDTIGFGSDAA-LMSAVITGLVNVFATMVSIYGVD 345
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG---FSIGYAYLILVLICVYKAGFGF 357
K GR+ LFL GG+QML+ Q ++ + + A+ G G YA ++++ IC+Y +GF +
Sbjct: 346 KWGRRFLFLEGGVQMLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAW 405
Query: 358 SWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417
SWGPLGWLVPSEIFPLEIRSA QS+ V+V + FT +VAQ FL MLCH K G+F FF ++
Sbjct: 406 SWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFV 465
Query: 418 TVMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDD 455
+M+ FV++FLPETK +PIE M +VW++HW+W ++ D
Sbjct: 466 LIMSIFVYYFLPETKGIPIEEMGQVWKQHWYWSRYVVD 503
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Ricinus communis (taxid: 3988) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/471 (52%), Positives = 339/471 (71%), Gaps = 11/471 (2%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSME FL KFFPEV+++M E + + YCKFD+QLL TSSLY+ + +S +AS+VTR
Sbjct: 48 GVTSMEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTR 107
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G K+S+ +GGVAFL GS A N+ MLI GRLLLGVG+ F NQS P+YLSEMAP K
Sbjct: 108 KYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAK 167
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA NIGFQ+ + GIL ANL+NYGT ++ GW++SL +AA PA I+ IGS LP+T
Sbjct: 168 IRGALNIGFQMAITIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDT 226
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQR-KYRPQ 239
PNS+++R +++A +MLQ++ G +V E +DL A +K +++P+K I Q+ KYRP
Sbjct: 227 PNSMLER-GKYEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPA 285
Query: 240 LVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILA 299
LV IPFFQQ+TG+N+I FYAPVLF+T+ +++ SL+ SA++TG + VS ++ +
Sbjct: 286 LVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADDASLI-SAVITGAVNVVSTLVSIYAV 344
Query: 300 DKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSI--GYAYLILVLICVYKAGFGF 357
D+ GR++LFL GGIQM+VSQ+++G+++ + G G ++ A IL IC+Y AGF +
Sbjct: 345 DRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAW 404
Query: 358 SWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417
SWGPLGWLVPSEI PLEIR AGQ+I V+V + FT L+ Q FL MLCH K G+F+FFGG +
Sbjct: 405 SWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMV 464
Query: 418 TVMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDV-----GEESKIQ 463
VMT F++F LPETK VPIE M +VW++H FW+++ D GEE+ ++
Sbjct: 465 AVMTVFIYFLLPETKGVPIEEMGRVWKQHPFWKRYMPDDAVIGGGEENYVK 515
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/458 (53%), Positives = 334/458 (72%), Gaps = 5/458 (1%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSM FLK+FFP V RK +ED + YC++DS LT TSSLY+ +++SL+AS+VTR
Sbjct: 46 GVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTR 105
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G ++S+L GG+ F AG+ + G A +++MLI GR+LLG GI F NQ+VPLYLSEMAP K
Sbjct: 106 KFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYK 165
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA NIGFQ+ + GIL A +LNY KIKGGWGW++SL A PA I+TIGSL LP+T
Sbjct: 166 YRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDT 225
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+I+R H++A+ L+R+ G DV E +DL+ AS +S++I HP++ +++RKYRP L
Sbjct: 226 PNSMIER-GQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHL 284
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
MA++IPFFQQ+TG+N+I FYAPVLF TI + + S LMSA+VTG + + ++ + D
Sbjct: 285 TMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDAS-LMSAVVTGSVNVAATLVSIYGVD 343
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQL---GDHGGFSIGYAYLILVLICVYKAGFGF 357
+ GR+ LFL GG QML+ Q ++ + + A+ G G YA +++ IC+Y AGF +
Sbjct: 344 RWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAW 403
Query: 358 SWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417
SWGPLGWLVPSEIFPLEIRSA QSITV+V ++FT ++AQ FL MLCH K G+F F ++
Sbjct: 404 SWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFV 463
Query: 418 TVMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDD 455
VM+ FV+ FLPETK +PIE M +VWR HW+W +F +D
Sbjct: 464 VVMSIFVYIFLPETKGIPIEEMGQVWRSHWYWSRFVED 501
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Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 254/457 (55%), Positives = 335/457 (73%), Gaps = 5/457 (1%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSMEPFL++FFP V +KM+ + ++YC+FDSQLLT TSSLY+ +++SL AS++TR
Sbjct: 46 GVTSMEPFLEEFFPYVYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITR 104
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G K S+ +GG F GSA G A NI ML+ GR+LLG G+ F NQSVP+YLSEMAPP
Sbjct: 105 VFGRKWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPN 164
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGAFN GFQV + GI+ A ++NY T ++KG GW+ISL +A PA ++ IG+L LP+T
Sbjct: 165 LRGAFNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDT 224
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+I+R ++A++MLQ + GT +V E +DLI AS +SK + HP+K I+ +YRPQL
Sbjct: 225 PNSLIER-GYTEEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQL 283
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
+M IPFFQQ+TG+N+I+FYAPVLF+T+ SLL SA+VTG I + + + D
Sbjct: 284 IMTCFIPFFQQLTGINVITFYAPVLFQTLGFGSKASLL-SAMVTGIIELLCTFVSVFTVD 342
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY--AYLILVLICVYKAGFGFS 358
+ GR++LFL GGIQMLVSQ+ IG+++ + G G +IG A LI+ LIC+Y AGF +S
Sbjct: 343 RFGRRILFLQGGIQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWS 402
Query: 359 WGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLT 418
WGPLGWLVPSEI PLEIRSA Q+I V+V + FT LVAQ FL MLCH K G+FFFF ++
Sbjct: 403 WGPLGWLVPSEISPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVV 462
Query: 419 VMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDD 455
+MT F++ LPETKNVPIE M++VW+ HWFW KF D
Sbjct: 463 IMTIFIYLMLPETKNVPIEEMNRVWKAHWFWGKFIPD 499
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 503 bits (1296), Expect = e-142, Method: Compositional matrix adjust.
Identities = 240/464 (51%), Positives = 339/464 (73%), Gaps = 7/464 (1%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSM+ FL++FF V K ++ + S+YCK+D+Q L + TSSLY+ G++++L+AS +TR
Sbjct: 50 GVTSMDEFLEEFFHTVYEKKKQAHE-SNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITR 108
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G + SI+ GG++FL GS L A N+ ML+ GR++LGVGI FGNQ+VPLYLSE+AP
Sbjct: 109 NYGRRASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTH 168
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RG N+ FQ+ GI +AN++NYGTQ++K WGW++SL +AA PA ++T+G FLPET
Sbjct: 169 LRGGLNMMFQLATTIGIFTANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPET 227
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+++R ++ ++L ++ GT +V AEL+D++ AS + +I HPF+ I+Q+++RPQL
Sbjct: 228 PNSLVER-GLTERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQL 286
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
VMAI +P FQ +TG+N I FYAPVLF+T+ N SL SAL TG + +S + + L D
Sbjct: 287 VMAICMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSAL-TGAVLVLSTFISIGLVD 345
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWG 360
+LGR+ L + GGIQM++ QV++ I+ + GD+ S GY+ ++++ IC++ FG+SWG
Sbjct: 346 RLGRRALLITGGIQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWG 405
Query: 361 PLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420
PLGW +PSEIFPLE RSAGQSITVAV LLFT ++AQ FL +LC FK G+F FF GW+TVM
Sbjct: 406 PLGWTIPSEIFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVM 465
Query: 421 TTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDD---VGEESK 461
T FV+F LPETK VPIE M +W +HWFW+K D + +ESK
Sbjct: 466 TIFVYFLLPETKGVPIEEMTLLWSKHWFWKKVLPDATNLEDESK 509
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/468 (52%), Positives = 331/468 (70%), Gaps = 7/468 (1%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDT-KVSDYCKFDSQLLTSLTSSLYITGILASLIASSVT 59
GVTSM FL+KFFP V RK+ K S+YCK+D+Q L TSSLY+ G+ A+ AS T
Sbjct: 46 GVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTT 105
Query: 60 RALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPP 119
R LG ++++LI GV F+ G AL A ++ MLI GR+LLG G+ F NQ+VPL+LSE+AP
Sbjct: 106 RTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPT 165
Query: 120 KCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179
+ RG NI FQ+ V GIL ANL+NYGT KIKGGWGW++SL +A PA +LT+G+L + E
Sbjct: 166 RIRGGLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTE 225
Query: 180 TPNSIIQRTN-DHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRP 238
TPNS+++R D KA +L+R+ GT +V+ E DL+ AS +K + HPF+ ++QR+ RP
Sbjct: 226 TPNSLVERGRLDEGKA--VLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRP 283
Query: 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMIL 298
QLV+A+ + FQQ TG+N I FYAPVLF T+ + S L SA+VTG + +S ++ +
Sbjct: 284 QLVIAVALQIFQQCTGINAIMFYAPVLFSTLGFGSDAS-LYSAVVTGAVNVLSTLVSIYS 342
Query: 299 ADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG-GFSIGYAYLILVLICVYKAGFGF 357
DK+GR+VL L G+QM SQV+I I+ ++ D S G+A L++V+IC Y A F +
Sbjct: 343 VDKVGRRVLLLEAGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAW 402
Query: 358 SWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417
SWGPLGWL+PSE FPLE RSAGQS+TV V LLFT ++AQ FL+MLCHFK G+F FF W+
Sbjct: 403 SWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWV 462
Query: 418 TVMTTFVHFFLPETKNVPIELM-DKVWREHWFWRKFFDDVGEESKIQG 464
+M+ FV F LPETKN+PIE M ++VW++HWFW +F DD + + G
Sbjct: 463 LIMSVFVMFLLPETKNIPIEEMTERVWKKHWFWARFMDDHNDHEFVNG 510
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/466 (51%), Positives = 332/466 (71%), Gaps = 8/466 (1%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSME FL KFFP+V +M++ + YCKFD+Q+L TSSLY+ ++AS +AS +TR
Sbjct: 48 GVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITR 107
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G KVS+ IGG+AFL G+ A N+ MLI GRLLLGVG+ F NQS P+YLSEMAP K
Sbjct: 108 KHGRKVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAK 167
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA NIGFQ+ + GIL ANL+NYGT K+ GW++SL +AA PA ++ IGS LP+T
Sbjct: 168 IRGALNIGFQMAITIGILVANLINYGTSKMAQH-GWRVSLGLAAVPAVVMVIGSFILPDT 226
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+++R +++A++ML+++ G +V E +DLI A +K + +P+K I++ KYRP L
Sbjct: 227 PNSMLER-GKNEEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPAL 285
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
+ IPFFQQ+TG+N+I FYAPVLF+T+ ++ + LMSA++TG + +S + + D
Sbjct: 286 IFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDDAA-LMSAVITGVVNMLSTFVSIYAVD 344
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSI--GYAYLILVLICVYKAGFGFS 358
+ GR++LFL GGIQM + Q+++GS + A+ G G ++ A IL ICVY AGF +S
Sbjct: 345 RYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWS 404
Query: 359 WGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLT 418
WGPLGWLVPSEI PLEIR AGQ+I V+V + FT L+ Q FL MLCH K G+F+FF +
Sbjct: 405 WGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVA 464
Query: 419 VMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGEESKIQG 464
+MT F++F LPETK VPIE M +VW++HWFW+K+ + E++ I G
Sbjct: 465 IMTVFIYFLLPETKGVPIEEMGRVWKQHWFWKKY---IPEDAIIGG 507
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/458 (53%), Positives = 332/458 (72%), Gaps = 5/458 (1%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDT-KVSDYCKFDSQLLTSLTSSLYITGILASLIASSVT 59
GV SME FL KFFP+V R+M+ + ++YCK+D++LLT TSSLY+ + AS +AS++T
Sbjct: 47 GVISMEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTIT 106
Query: 60 RALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPP 119
R G KVS++IG +AFL+G+ L G A N+ MLI GRL LGVG+ F NQSVPLYLSEMAP
Sbjct: 107 RLFGRKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPA 166
Query: 120 KCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179
K RGA NIGFQ+ + GIL+AN++NY T K++ G GW++SL +A PA ++ +G FLP+
Sbjct: 167 KIRGALNIGFQLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPD 226
Query: 180 TPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQ 239
TPNSI++R N +KA++MLQ++ GT +V+ E +L A +K + HP+ I+Q +YRPQ
Sbjct: 227 TPNSILERGNK-EKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQ 285
Query: 240 LVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILA 299
L IPFFQQ+TG+N+I FYAPVLF+TI + SL+ SA++TG + +S I+ +
Sbjct: 286 LTFCTFIPFFQQLTGINVIMFYAPVLFKTIGFGNDASLI-SAVITGLVNVLSTIVSIYSV 344
Query: 300 DKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLG--DHGGFSIGYAYLILVLICVYKAGFGF 357
DK GR+ LFL GG QM+V+Q+ +GS++ + G G S A +IL LIC+Y AGF +
Sbjct: 345 DKFGRRALFLQGGFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAW 404
Query: 358 SWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417
SWGPLGWLVPSEI PLEIRSAGQS+ V+V + FT + Q FL MLCH K G+F+FF G +
Sbjct: 405 SWGPLGWLVPSEICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMV 464
Query: 418 TVMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDD 455
+MT F++F LPETK VPIE M KVW+EH +W K+ ++
Sbjct: 465 LIMTIFIYFLLPETKGVPIEEMGKVWKEHRYWGKYSNN 502
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | ||||||
| 224129904 | 516 | predicted protein [Populus trichocarpa] | 0.997 | 0.901 | 0.692 | 0.0 | |
| 255539853 | 510 | sugar transporter, putative [Ricinus com | 0.978 | 0.894 | 0.717 | 0.0 | |
| 47078687 | 508 | putative hexose transporter [Vitis vinif | 0.995 | 0.913 | 0.696 | 0.0 | |
| 225466031 | 508 | PREDICTED: hexose carrier protein HEX6 [ | 0.995 | 0.913 | 0.696 | 0.0 | |
| 1708191 | 510 | RecName: Full=Hexose carrier protein HEX | 0.978 | 0.894 | 0.715 | 0.0 | |
| 147816021 | 508 | hypothetical protein VITISV_025873 [Viti | 0.995 | 0.913 | 0.694 | 0.0 | |
| 357455795 | 509 | Hexose carrier [Medicago truncatula] gi| | 0.982 | 0.899 | 0.706 | 0.0 | |
| 224139190 | 509 | predicted protein [Populus trichocarpa] | 0.995 | 0.911 | 0.713 | 0.0 | |
| 356517750 | 501 | PREDICTED: hexose carrier protein HEX6-l | 0.980 | 0.912 | 0.713 | 0.0 | |
| 356515367 | 510 | PREDICTED: hexose carrier protein HEX6-l | 0.982 | 0.898 | 0.672 | 0.0 |
| >gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/472 (69%), Positives = 394/472 (83%), Gaps = 7/472 (1%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSMEPFLKKFFPEV +M+EDTK+S+YCKFDSQLLTS TSSLY+ G++AS ASS+TR
Sbjct: 45 GVTSMEPFLKKFFPEVYARMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFFASSITR 104
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQS-------VPLYL 113
G K SIL GG AFL+GSAL G+A N+YMLIFGR+LLGVG+ F NQ+ VPLYL
Sbjct: 105 YFGRKPSILAGGAAFLSGSALNGAATNLYMLIFGRVLLGVGVGFANQAGAEPRRAVPLYL 164
Query: 114 SEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG 173
SEMAPP+ RGA N GFQ+C+A G+LSAN +N+GT+KI+GGWGW+ISLAM A PA+ LTIG
Sbjct: 165 SEMAPPRYRGAINNGFQLCIAIGVLSANFINFGTEKIEGGWGWRISLAMGAIPATFLTIG 224
Query: 174 SLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQ 233
SLFLPETPNS+IQR ND QKA+ MLQR+ GT DV+AE DLI+AS SK+I HP KKIIQ
Sbjct: 225 SLFLPETPNSLIQRFNDEQKAKTMLQRIRGTTDVEAEFNDLIKASLVSKSIEHPIKKIIQ 284
Query: 234 RKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAI 293
+KYRPQLVMAI IPFFQQVTG+N+ISFYAP+LFRTI LSE+ SL+MSAL+ G +GT S
Sbjct: 285 KKYRPQLVMAIAIPFFQQVTGINVISFYAPILFRTIGLSESVSLIMSALIAGVVGTASTF 344
Query: 294 LPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKA 353
L M++ DKLGR+V+ + GG+QM VSQ+MIGSIMAAQLGDHG + GYAY +L +I +Y +
Sbjct: 345 LSMLVVDKLGRRVMLICGGVQMFVSQIMIGSIMAAQLGDHGSINKGYAYFVLTMISIYVS 404
Query: 354 GFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFF 413
GF +SWGPLGWLVPSEIFPLEIRS GQSI VAV +FT +VAQTFLAMLCHFK+G+FFFF
Sbjct: 405 GFAWSWGPLGWLVPSEIFPLEIRSVGQSIVVAVNFVFTFIVAQTFLAMLCHFKSGIFFFF 464
Query: 414 GGWLTVMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGEESKIQGA 465
GGW+ VMT FV+ LPETK VPIE+MD+VWREHWFW++ ++ ++SK++ A
Sbjct: 465 GGWVAVMTAFVYLLLPETKKVPIEVMDRVWREHWFWKRIVEEFDDKSKMEPA 516
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/460 (71%), Positives = 397/460 (86%), Gaps = 4/460 (0%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSM+PFLKKFFP+V RKM+EDT++S+YCKFDSQLLTS TSSLY+ G++AS ASSVTR
Sbjct: 45 GVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTR 104
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
A G K SIL+GG FLAG+ALGG+A N+YMLIFGR+LLGVG+ F NQ+VPLYLSEMAPP+
Sbjct: 105 AFGRKPSILLGGAVFLAGAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPR 164
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA N GFQ V G LSANL+NYGT+KI+GGWGW+ISLAMAA PA+ILT G+LFLPET
Sbjct: 165 YRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPET 224
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+IQR+NDH++A+ MLQRV GT DVQAEL+DLI+AS S+ I HPFK I++RKYRPQL
Sbjct: 225 PNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQL 284
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
VMA+ IPFFQQVTG+N+I+FYAP+LFRTI L E+ SLL S++VTG +G+ S + M++ D
Sbjct: 285 VMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSASTFISMLIVD 343
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWG 360
KLGR+ LF+ GG+QM V+Q+M+GSIMAA+LGDHGG GYAY++L+LIC+Y AGFG+SWG
Sbjct: 344 KLGRRALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWG 403
Query: 361 PLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420
PLGWLVPSEIFPLEIRSAGQSI VAV LFT +VAQTFL+MLCHFK+G+FFFFGGW+ VM
Sbjct: 404 PLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVM 463
Query: 421 TTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGEES 460
T FVHF LPETK VPIE MD VWR+HWFW+K +GEE+
Sbjct: 464 TAFVHFLLPETKKVPIEKMDIVWRDHWFWKKI---IGEEA 500
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/465 (69%), Positives = 397/465 (85%), Gaps = 1/465 (0%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSM+ FLKKFFPEV ++M+EDTK+S+YCKFDSQLLTS TSSLYI G++AS +AS +T+
Sbjct: 45 GVTSMDSFLKKFFPEVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITK 104
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G K +IL GG AFL GSALGG+AFN+YM+I GR+LLGVG+ F NQ+VPLYLSEMAPP+
Sbjct: 105 KFGRKPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPR 164
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA N GFQ + G LSANL+N+GT+KIKGGWGW++SLA+AA PASILT+G+LFLPET
Sbjct: 165 YRGAINNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPET 224
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+IQR+ D+ KAE MLQRV GT DVQAEL+DL++ASS +K IN PFKKI+QRKYRPQL
Sbjct: 225 PNSLIQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQL 284
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
VMAI IPFFQQVTG+N+I+FYAPVLFR I L + SLL SA+VTG +G S + M++ D
Sbjct: 285 VMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMASTFISMLIVD 343
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWG 360
KLGR+VLFL+GGIQMLVSQ+M+G I+AA+LGDHGG S YA+L+L+LICVY AGFG+SWG
Sbjct: 344 KLGRRVLFLVGGIQMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYVAGFGWSWG 403
Query: 361 PLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420
PLGWLVPSEIFPLEIRSAGQSITVAV +FT +VAQTFL+MLCHFK+G+FFFFGGW+ +M
Sbjct: 404 PLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFFFGGWVVLM 463
Query: 421 TTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGEESKIQGA 465
T FV++ LPETK++PIE MD+VW+EHWFW++ + K++ A
Sbjct: 464 TAFVYYLLPETKSIPIEQMDRVWKEHWFWKRIVVEKLSNPKMETA 508
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/465 (69%), Positives = 397/465 (85%), Gaps = 1/465 (0%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSM+ FLKKFFPEV ++M+EDTK+S+YCKFDSQLLTS TSSLYI G++AS +AS +T+
Sbjct: 45 GVTSMDSFLKKFFPEVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITK 104
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G K +IL GG AFL GSALGG+AFN+YM+I GR+LLGVG+ F NQ+VPLYLSEMAPP+
Sbjct: 105 KFGRKPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPR 164
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA N GFQ + G LSANL+N+GT+KIKGGWGW++SLA+AA PASILT+G+LFLPET
Sbjct: 165 YRGAINNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPET 224
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+IQR+ D+ KAE MLQRV GT DVQAEL+DL++ASS +K IN PFKKI+QRKYRPQL
Sbjct: 225 PNSLIQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQL 284
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
VMAI IPFFQQVTG+N+I+FYAPVLFR I L + SLL SA+VTG +G S + M++ D
Sbjct: 285 VMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMASTFISMLIVD 343
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWG 360
KLGR+VLFL+GGIQMLVSQ+M+G I+AA+LGDHGG S YA+L+L+LICVY AGFG+SWG
Sbjct: 344 KLGRRVLFLVGGIQMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYVAGFGWSWG 403
Query: 361 PLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420
PLGWLVPSEIFPLEIRSAGQSITVAV +FT +VAQTFL+MLCHFK+G+FFFFGGW+ +M
Sbjct: 404 PLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFFFGGWVVLM 463
Query: 421 TTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGEESKIQGA 465
T FV++ LPETK++PIE MD+VW+EHWFW++ + K++ A
Sbjct: 464 TAFVYYLLPETKSIPIEQMDRVWKEHWFWKRIVVEELSNPKMETA 508
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/460 (71%), Positives = 396/460 (86%), Gaps = 4/460 (0%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSM+PFLKKFFP+V RKM+EDT++S+YCKFDSQLLTS TSSLY+ G++AS ASSVTR
Sbjct: 45 GVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTR 104
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
A G K SIL+GG FLA +ALGG+A N+YMLIFGR+LLGVG+ F NQ+VPLYLSEMAPP+
Sbjct: 105 AFGRKPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPR 164
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA N GFQ V G LSANL+NYGT+KI+GGWGW+ISLAMAA PA+ILT G+LFLPET
Sbjct: 165 YRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPET 224
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+IQR+NDH++A+ MLQRV GT DVQAEL+DLI+AS S+ I HPFK I++RKYRPQL
Sbjct: 225 PNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQL 284
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
VMA+ IPFFQQVTG+N+I+FYAP+LFRTI L E+ SLL S++VTG +G+ S + M++ D
Sbjct: 285 VMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSASTFISMLIVD 343
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWG 360
KLGR+ LF+ GG+QM V+Q+M+GSIMAA+LGDHGG GYAY++L+LIC+Y AGFG+SWG
Sbjct: 344 KLGRRALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWG 403
Query: 361 PLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420
PLGWLVPSEIFPLEIRSAGQSI VAV LFT +VAQTFL+MLCHFK+G+FFFFGGW+ VM
Sbjct: 404 PLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFFFFGGWVVVM 463
Query: 421 TTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGEES 460
T FVHF LPETK VPIE MD VWR+HWFW+K +GEE+
Sbjct: 464 TAFVHFLLPETKKVPIEKMDIVWRDHWFWKKI---IGEEA 500
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/465 (69%), Positives = 396/465 (85%), Gaps = 1/465 (0%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSM+ FLKKFFP V ++M+EDTK+S+YCKFDSQLLTS TSSLYI G++AS +AS +T+
Sbjct: 45 GVTSMDSFLKKFFPXVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITK 104
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G K +IL GG AFL GSALGG+AFN+YM+I GR+LLGVG+ F NQ+VPLYLSEMAPP+
Sbjct: 105 KFGRKPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPR 164
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA N GFQ + G LSANL+N+GT+KIKGGWGW++SLA+AA PASILT+G+LFLPET
Sbjct: 165 YRGAINNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPET 224
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+IQR+ D+ KAE MLQRV GT DVQAEL+DL++ASS +K IN PFKKI+QRKYRPQL
Sbjct: 225 PNSLIQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQL 284
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
VMAI IPFFQQVTG+N+I+FYAPVLFR I L + SLL SA+VTG +G S + M++ D
Sbjct: 285 VMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMASTFISMLIVD 343
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWG 360
KLGR+VLFL+GGIQMLVSQ+M+G I+AA+LGDHGG S YA+L+L+LICVY AGFG+SWG
Sbjct: 344 KLGRRVLFLVGGIQMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVYVAGFGWSWG 403
Query: 361 PLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420
PLGWLVPSEIFPLEIRSAGQSITVAV +FT +VAQTFL+MLCHFK+G+FFFFGGW+ +M
Sbjct: 404 PLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFFFFGGWVVLM 463
Query: 421 TTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGEESKIQGA 465
T FV++ LPETK++PIE MD+VW+EHWFW++ + K++ A
Sbjct: 464 TAFVYYLLPETKSIPIEQMDRVWKEHWFWKRIVVEEXSNPKMETA 508
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/464 (70%), Positives = 384/464 (82%), Gaps = 6/464 (1%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSM PFL+KFFP+V KM++D K+S+YCKFDSQLLT+ TSSLYI G+LAS ASS+TR
Sbjct: 46 GVTSMVPFLEKFFPDVYTKMKQDNKISNYCKFDSQLLTTFTSSLYIAGLLASFFASSITR 105
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
A G K SIL+GG AFL G+ALGG+A NIYMLI GR+LLGVGI F NQ+VPLYLSEMA P+
Sbjct: 106 AFGRKPSILVGGAAFLIGAALGGAALNIYMLILGRVLLGVGIGFANQAVPLYLSEMALPR 165
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA NIGFQ+CV G+LSANL+N+GT+KIK GWGW+ISLAMAA PA+ILT+G+ FLPET
Sbjct: 166 YRGAINIGFQLCVGIGVLSANLINFGTEKIKDGWGWRISLAMAAVPATILTLGAFFLPET 225
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNSIIQ + +HQKA+ MLQ + GT DVQ E EDLI AS S +I HPFK I+QRKYRPQL
Sbjct: 226 PNSIIQNSKNHQKAKLMLQSIRGTHDVQQEFEDLIEASIMSNSIKHPFKNILQRKYRPQL 285
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
VMAI IPFFQQ TG+N+ISFYAP+LF TI L E+ SLL SA++ G +GT S + M++ D
Sbjct: 286 VMAIAIPFFQQFTGINVISFYAPILFLTIGLGESASLL-SAVMVGIVGTTSTFISMLIVD 344
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWG 360
KLGR+VLF+ GGIQM SQ++IGSIMAAQLGDHG S YAYLILVLIC+Y AGF +SWG
Sbjct: 345 KLGRRVLFISGGIQMFFSQILIGSIMAAQLGDHGEISKKYAYLILVLICIYVAGFAWSWG 404
Query: 361 PLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420
PLGWLVPSEIFPLEIRSA QSITVAV LFT +VAQTFL+MLCHFK G FFFFGGW+ +M
Sbjct: 405 PLGWLVPSEIFPLEIRSAAQSITVAVNFLFTFIVAQTFLSMLCHFKYGTFFFFGGWVVIM 464
Query: 421 TTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGEESKIQG 464
T FV+F LPETKNVPIE MD+VWREH+FW++ D KI+G
Sbjct: 465 TVFVYFLLPETKNVPIEQMDRVWREHFFWKRIVGD-----KIEG 503
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139190|ref|XP_002323002.1| predicted protein [Populus trichocarpa] gi|222867632|gb|EEF04763.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/465 (71%), Positives = 402/465 (86%), Gaps = 1/465 (0%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSMEPFL+KFFP+V RKM+EDT++S+YCKFDSQLLTS TSS+Y+ G +AS ASS+T+
Sbjct: 46 GVTSMEPFLEKFFPKVYRKMKEDTEISNYCKFDSQLLTSFTSSMYVAGFIASFFASSITK 105
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
A G K SIL+GG AFLAG+ALGG+AFN+YMLIFGR+LLGVG+ F NQ+VPLYLSEMAPP+
Sbjct: 106 AFGRKPSILLGGAAFLAGAALGGAAFNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPR 165
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA N GFQ + G LSANL+NYGT+KIKGGWGW+ISLA+AA PA+ILT+G++FLPET
Sbjct: 166 YRGAINNGFQFSIGIGALSANLINYGTEKIKGGWGWRISLALAAVPATILTLGAVFLPET 225
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+IQ T+D ++A+ MLQRV GT DVQAEL+DLI+ASS SK + HPFKKII+RKYRPQL
Sbjct: 226 PNSLIQLTDDTERAKLMLQRVRGTEDVQAELDDLIKASSISKTVEHPFKKIIKRKYRPQL 285
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
VMAI IPFFQQVTG+N+I+FYAP+LFRTI L E+ S LMS++VTG +GT S + M++ D
Sbjct: 286 VMAIAIPFFQQVTGINVIAFYAPILFRTIGLGESAS-LMSSVVTGIVGTGSTFISMLVVD 344
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWG 360
KLGR+ LF+ GG+QMLVSQ+M+G IMAAQLGDHGG GYAY++L+LIC+Y AGF +SWG
Sbjct: 345 KLGRRALFIFGGVQMLVSQIMVGGIMAAQLGDHGGIGGGYAYVVLILICIYVAGFSWSWG 404
Query: 361 PLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420
PLGWLVPSEIFPLEIRSAGQSI VAV LFT +VAQTFLAMLCHFK+G+FFFFGGW+ VM
Sbjct: 405 PLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFIVAQTFLAMLCHFKSGIFFFFGGWVVVM 464
Query: 421 TTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGEESKIQGA 465
T FV++FLPETKN PIE MD+VWREH FW K ++ E++KI+ A
Sbjct: 465 TAFVYYFLPETKNTPIEKMDRVWREHGFWNKIVGEMDEQTKIEAA 509
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517750|ref|XP_003527549.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/460 (71%), Positives = 378/460 (82%), Gaps = 3/460 (0%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
GVTSM PFL+KFFP+V KM++DTKVS+YCKFDSQLLT+ TSSLYI G++AS ASSVTR
Sbjct: 45 GVTSMVPFLEKFFPDVYTKMKQDTKVSNYCKFDSQLLTAFTSSLYIAGLIASFFASSVTR 104
Query: 61 ALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
A G K SILIGG AFL G+ALGG+A NIYMLI GR++LGVGI F NQS PLYLSEMAPP+
Sbjct: 105 AFGRKPSILIGGAAFLIGAALGGAALNIYMLILGRVMLGVGIGFANQSAPLYLSEMAPPR 164
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA N GFQ+CV G+LSANL+N+GT+KIK GWGW+ISL MAA PAS+LT GSLFLPET
Sbjct: 165 YRGAINTGFQLCVGIGVLSANLVNFGTEKIKAGWGWRISLVMAAVPASMLTFGSLFLPET 224
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNSIIQ +HQKA+ MLQR+ GT DVQ ELEDLI AS S +I HPFK I+ RKYRPQL
Sbjct: 225 PNSIIQHDKNHQKAKLMLQRIRGTDDVQQELEDLIEASEMSNSIKHPFKNILHRKYRPQL 284
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
VMAI IPFFQQ TG+N+ISFYAP+LF TI L E+ SLL+SA+VTG +GT S + M++ D
Sbjct: 285 VMAIAIPFFQQFTGINVISFYAPILFLTIGLGESASLLLSAVVTGFVGTASTFISMLMVD 344
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWG 360
+LGR+VLF+ GGIQM SQV+IGSIMA QLGDHG YAYLILVLIC+Y AGF +SWG
Sbjct: 345 RLGRRVLFISGGIQMFFSQVLIGSIMATQLGDHGEIDKKYAYLILVLICIYVAGFAWSWG 404
Query: 361 PLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420
PLGWLVPSEIF LEIRSA QSITVAV FT +VAQTFL MLCHFK G FFFFGGW+ VM
Sbjct: 405 PLGWLVPSEIFQLEIRSAAQSITVAVNFFFTFIVAQTFLIMLCHFKFGTFFFFGGWVVVM 464
Query: 421 TTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGEES 460
T FV+ LPET+NVPIE MD+VWREH+FW++ VG+ S
Sbjct: 465 TAFVYLLLPETRNVPIEQMDRVWREHFFWKRI---VGQRS 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/461 (67%), Positives = 385/461 (83%), Gaps = 3/461 (0%)
Query: 1 GVTSMEPFLKKFFPEVNRKMR-EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVT 59
GVTSMEPFLKKFF +V KM+ D KVS+YC FDSQLLTS TSSLY+ G++ S AS +T
Sbjct: 45 GVTSMEPFLKKFFHKVYLKMKLADDKVSNYCVFDSQLLTSFTSSLYVAGLVTSFFASYIT 104
Query: 60 RALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPP 119
+A G K SI++GG AFLAG+ LGG+AFN+YMLI GRLLLGVG+ F NQ+VPLYLSEMA P
Sbjct: 105 KAFGRKPSIVVGGAAFLAGTGLGGAAFNVYMLIVGRLLLGVGVGFANQAVPLYLSEMALP 164
Query: 120 KCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179
+ RGA N GFQ+ + G LSANL+NYGT+KI+GGWGW++SLAMAA PAS+LT+G+LFLPE
Sbjct: 165 RLRGAINNGFQLSIGIGALSANLINYGTEKIEGGWGWRMSLAMAAVPASVLTLGALFLPE 224
Query: 180 TPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSK-NINHPFKKIIQRKYRP 238
TPNS+IQR++D QKA+ MLQR+ G DVQAEL+DLI+ASS SK N K I++ +YRP
Sbjct: 225 TPNSVIQRSHDKQKAKLMLQRIRGMEDVQAELDDLIKASSPSKTNNKQSLKLILKGRYRP 284
Query: 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMIL 298
QLVMA+ IPFFQQVTG+N+I+FYAP+LFRTI L E+ SLL SA++TG +GT S + M +
Sbjct: 285 QLVMALAIPFFQQVTGINVIAFYAPLLFRTIGLGESASLL-SAVMTGVVGTGSTFISMFV 343
Query: 299 ADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFS 358
DKLGR+ LF++GGIQM VSQ ++G IMA L DHGG S GYA+++LV+IC+Y AGFG+S
Sbjct: 344 VDKLGRRTLFMIGGIQMFVSQCIVGGIMALHLKDHGGLSKGYAFVVLVMICIYVAGFGWS 403
Query: 359 WGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLT 418
WGPLGWLVPSEIFPLEIRSAGQSITVAV +FT +VAQTFL+MLCHF++G+FFFFGGW+
Sbjct: 404 WGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFRSGIFFFFGGWVV 463
Query: 419 VMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGEE 459
VMTTFV++FLPETK+VP+E M+KVW+EHWFW++ +V +
Sbjct: 464 VMTTFVYYFLPETKSVPLEQMEKVWQEHWFWKRIVGEVSDR 504
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 466 | ||||||
| TAIR|locus:2151596 | 514 | AT5G61520 [Arabidopsis thalian | 0.959 | 0.869 | 0.586 | 4e-138 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.976 | 0.871 | 0.511 | 1.2e-127 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.969 | 0.879 | 0.518 | 3.7e-126 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.987 | 0.889 | 0.492 | 8e-124 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.980 | 0.889 | 0.501 | 1.3e-123 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.989 | 0.876 | 0.495 | 2.7e-123 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.980 | 0.890 | 0.487 | 9.2e-123 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.969 | 0.879 | 0.490 | 2.8e-121 | |
| TAIR|locus:2009323 | 506 | AT1G34580 [Arabidopsis thalian | 0.959 | 0.883 | 0.453 | 6.8e-111 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.976 | 0.902 | 0.448 | 5.5e-109 |
| TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1352 (481.0 bits), Expect = 4.0e-138, P = 4.0e-138
Identities = 268/457 (58%), Positives = 330/457 (72%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKV-----SDYCKFDXXXXXXXXXXXYITGILASLIA 55
GV SM PFLK+FFP+V + ED + + YC F+ Y++G++A+L+A
Sbjct: 47 GVMSMGPFLKRFFPKVYKLQEEDRRRRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLA 106
Query: 56 SSVTRALGGKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIDFGNQSVPLYLSE 115
SSVTR+ G K SI + N+ MLI RLLLGVG+ F NQSVPLYLSE
Sbjct: 107 SSVTRSWGRKPSIFLGGVSFLAGAALGGSAQNVAMLIIARLLLGVGVGFANQSVPLYLSE 166
Query: 116 MAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSL 175
MAP K RGA + GFQ+C+ G LSAN++NY TQ IK GW +ISLA AA PASILT+GSL
Sbjct: 167 MAPAKYRGAISNGFQLCIGIGFLSANVINYETQNIKHGW--RISLATAAIPASILTLGSL 224
Query: 176 FLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRK 235
FLPETPNSIIQ T D K E ML+RV GT DVQ EL DL+ ASS S ++ F K++QRK
Sbjct: 225 FLPETPNSIIQTTGDVHKTELMLRRVRGTNDVQDELTDLVEASSGSDTDSNAFLKLLQRK 284
Query: 236 YRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILP 295
YRP+LVMA++IPFFQQVTG+N+++FYAPVL+RT+ E+ SL MS LVTG +GT S +L
Sbjct: 285 YRPELVMALVIPFFQQVTGINVVAFYAPVLYRTVGFGESGSL-MSTLVTGIVGTSSTLLS 343
Query: 296 MILADKLGRKVLFLLGGIQMLVSQVMIGSI-MAAQLGDHGGFSIGYAYLILVLICVYKAG 354
M++ D++GRK LFL+GG+QMLVSQV IG I M A + D G GY Y ++VL+CVY AG
Sbjct: 344 MLVVDRIGRKTLFLIGGLQMLVSQVTIGVIVMVADVHD-GVIKEGYGYAVVVLVCVYVAG 402
Query: 355 FGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFG 414
FG+SWGPLGWLVPSEIFPLEIRS QS+TVAV +FT VAQ+ MLC F+AG+FFF+G
Sbjct: 403 FGWSWGPLGWLVPSEIFPLEIRSVAQSVTVAVSFVFTFAVAQSAPPMLCKFRAGIFFFYG 462
Query: 415 GWLTVMTTFVHFFLPETKNVPIELMDKVWREHWFWRK 451
GWL VMT V FLPETKNVPIE + +W +HWFWR+
Sbjct: 463 GWLVVMTVAVQLFLPETKNVPIEKVVGLWEKHWFWRR 499
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1253 (446.1 bits), Expect = 1.2e-127, P = 1.2e-127
Identities = 236/461 (51%), Positives = 320/461 (69%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDXXXXXXXXXXXYITGILASLIASSVTR 60
GVTSM FLK+FFP V RK +ED + YC++D Y+ +++SL+AS+VTR
Sbjct: 46 GVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTR 105
Query: 61 ALGGKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G ++S+L +++MLI GR+LLG GI F NQ+VPLYLSEMAP K
Sbjct: 106 KFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYK 165
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA NIGFQ+ + GIL A +LNY KIKGGWGW++SL A PA I+TIGSL LP+T
Sbjct: 166 YRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDT 225
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+I+R H++A+ L+R+ G DV E +DL+ AS +S++I HP++ +++RKYRP L
Sbjct: 226 PNSMIER-GQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHL 284
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
MA++IPFFQQ+TG+N+I FYAPVLF TI + + SL MSA+VTG + + ++ + D
Sbjct: 285 TMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASL-MSAVVTGSVNVAATLVSIYGVD 343
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG--G-FSIGYAYLILVLICVYKAGFGF 357
+ GR+ LFL GG QML+ Q ++ + + A+ G G G YA +++ IC+Y AGF +
Sbjct: 344 RWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAW 403
Query: 358 SWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417
SWGPLGWLVPSEIFPLEIRSA QSITV+V ++FT ++AQ FL MLCH K G+F F ++
Sbjct: 404 SWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFV 463
Query: 418 TVMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGE 458
VM+ FV+ FLPETK +PIE M +VWR HW+W +F +D GE
Sbjct: 464 VVMSIFVYIFLPETKGIPIEEMGQVWRSHWYWSRFVED-GE 503
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1239 (441.2 bits), Expect = 3.7e-126, P = 3.7e-126
Identities = 237/457 (51%), Positives = 318/457 (69%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDXXXXXXXXXXXYITGILASLIASSVTR 60
GVTSMEPFL++FFP V +KM+ + ++YC+FD Y+ +++SL AS++TR
Sbjct: 46 GVTSMEPFLEEFFPYVYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITR 104
Query: 61 ALGGKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G K S+ + NI ML+ GR+LLG G+ F NQSVP+YLSEMAPP
Sbjct: 105 VFGRKWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPN 164
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGAFN GFQV + GI+ A ++NY T ++KG GW+ISL +A PA ++ IG+L LP+T
Sbjct: 165 LRGAFNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDT 224
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+I+R ++A++MLQ + GT +V E +DLI AS +SK + HP+K I+ +YRPQL
Sbjct: 225 PNSLIERGYT-EEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQL 283
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
+M IPFFQQ+TG+N+I+FYAPVLF+T+ SLL SA+VTG I + + + D
Sbjct: 284 IMTCFIPFFQQLTGINVITFYAPVLFQTLGFGSKASLL-SAMVTGIIELLCTFVSVFTVD 342
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY--AYLILVLICVYKAGFGFS 358
+ GR++LFL GGIQMLVSQ+ IG+++ + G G +IG A LI+ LIC+Y AGF +S
Sbjct: 343 RFGRRILFLQGGIQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWS 402
Query: 359 WGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLT 418
WGPLGWLVPSEI PLEIRSA Q+I V+V + FT LVAQ FL MLCH K G+FFFF ++
Sbjct: 403 WGPLGWLVPSEISPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVV 462
Query: 419 VMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDD 455
+MT F++ LPETKNVPIE M++VW+ HWFW KF D
Sbjct: 463 IMTIFIYLMLPETKNVPIEEMNRVWKAHWFWGKFIPD 499
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
Identities = 232/471 (49%), Positives = 323/471 (68%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDXXXXXXXXXXXYITGILASLIASSVTR 60
GVTSME FL KFFPEV+++M E + + YCKFD Y+ + +S +AS+VTR
Sbjct: 48 GVTSMEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTR 107
Query: 61 ALGGKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G K+S+ + N+ MLI GRLLLGVG+ F NQS P+YLSEMAP K
Sbjct: 108 KYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAK 167
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA NIGFQ+ + GIL ANL+NYGT ++ GW++SL +AA PA I+ IGS LP+T
Sbjct: 168 IRGALNIGFQMAITIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDT 226
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQR-KYRPQ 239
PNS+++R +++A +MLQ++ G +V E +DL A +K +++P+K I Q+ KYRP
Sbjct: 227 PNSMLER-GKYEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPA 285
Query: 240 LVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILA 299
LV IPFFQQ+TG+N+I FYAPVLF+T+ +++ SL+ SA++TG + VS ++ +
Sbjct: 286 LVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADDASLI-SAVITGAVNVVSTLVSIYAV 344
Query: 300 DKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSI--GYAYLILVLICVYKAGFGF 357
D+ GR++LFL GGIQM+VSQ+++G+++ + G G ++ A IL IC+Y AGF +
Sbjct: 345 DRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAW 404
Query: 358 SWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417
SWGPLGWLVPSEI PLEIR AGQ+I V+V + FT L+ Q FL MLCH K G+F+FFGG +
Sbjct: 405 SWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMV 464
Query: 418 TVMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFF-DDV----GEESKIQ 463
VMT F++F LPETK VPIE M +VW++H FW+++ DD GEE+ ++
Sbjct: 465 AVMTVFIYFLLPETKGVPIEEMGRVWKQHPFWKRYMPDDAVIGGGEENYVK 515
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
Identities = 232/463 (50%), Positives = 317/463 (68%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDT-KVSDYCKFDXXXXXXXXXXXYITGILASLIASSVT 59
GV SME FL KFFP+V R+M+ + ++YCK+D Y+ + AS +AS++T
Sbjct: 47 GVISMEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTIT 106
Query: 60 RALGGKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPP 119
R G KVS++I N+ MLI GRL LGVG+ F NQSVPLYLSEMAP
Sbjct: 107 RLFGRKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPA 166
Query: 120 KCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179
K RGA NIGFQ+ + GIL+AN++NY T K++ G GW++SL +A PA ++ +G FLP+
Sbjct: 167 KIRGALNIGFQLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPD 226
Query: 180 TPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQ 239
TPNSI++R N +KA++MLQ++ GT +V+ E +L A +K + HP+ I+Q +YRPQ
Sbjct: 227 TPNSILERGNK-EKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQ 285
Query: 240 LVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILA 299
L IPFFQQ+TG+N+I FYAPVLF+TI + SL+ SA++TG + +S I+ +
Sbjct: 286 LTFCTFIPFFQQLTGINVIMFYAPVLFKTIGFGNDASLI-SAVITGLVNVLSTIVSIYSV 344
Query: 300 DKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG-GFSIGY-AYLILVLICVYKAGFGF 357
DK GR+ LFL GG QM+V+Q+ +GS++ + G +G G G A +IL LIC+Y AGF +
Sbjct: 345 DKFGRRALFLQGGFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAW 404
Query: 358 SWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417
SWGPLGWLVPSEI PLEIRSAGQS+ V+V + FT + Q FL MLCH K G+F+FF G +
Sbjct: 405 SWGPLGWLVPSEICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMV 464
Query: 418 TVMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFD-DVGEE 459
+MT F++F LPETK VPIE M KVW+EH +W K+ + D G++
Sbjct: 465 LIMTIFIYFLLPETKGVPIEEMGKVWKEHRYWGKYSNNDDGDD 507
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
Identities = 232/468 (49%), Positives = 316/468 (67%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDT-KVSDYCKFDXXXXXXXXXXXYITGILASLIASSVT 59
GVTSM FL+KFFP V RK+ K S+YCK+D Y+ G+ A+ AS T
Sbjct: 46 GVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTT 105
Query: 60 RALGGKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPP 119
R LG ++++LI ++ MLI GR+LLG G+ F NQ+VPL+LSE+AP
Sbjct: 106 RTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPT 165
Query: 120 KCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179
+ RG NI FQ+ V GIL ANL+NYGT KIKGGWGW++SL +A PA +LT+G+L + E
Sbjct: 166 RIRGGLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTE 225
Query: 180 TPNSIIQRTN-DHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRP 238
TPNS+++R D KA +L+R+ GT +V+ E DL+ AS +K + HPF+ ++QR+ RP
Sbjct: 226 TPNSLVERGRLDEGKA--VLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRP 283
Query: 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMIL 298
QLV+A+ + FQQ TG+N I FYAPVLF T+ + SL SA+VTG + +S ++ +
Sbjct: 284 QLVIAVALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLY-SAVVTGAVNVLSTLVSIYS 342
Query: 299 ADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG-GFSIGYAYLILVLICVYKAGFGF 357
DK+GR+VL L G+QM SQV+I I+ ++ D S G+A L++V+IC Y A F +
Sbjct: 343 VDKVGRRVLLLEAGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAW 402
Query: 358 SWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417
SWGPLGWL+PSE FPLE RSAGQS+TV V LLFT ++AQ FL+MLCHFK G+F FF W+
Sbjct: 403 SWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWV 462
Query: 418 TVMTTFVHFFLPETKNVPIELM-DKVWREHWFWRKFFDDVGEESKIQG 464
+M+ FV F LPETKN+PIE M ++VW++HWFW +F DD + + G
Sbjct: 463 LIMSVFVMFLLPETKNIPIEEMTERVWKKHWFWARFMDDHNDHEFVNG 510
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
Identities = 226/464 (48%), Positives = 321/464 (69%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDXXXXXXXXXXXYITGILASLIASSVTR 60
GVTSM+ FL++FF V K ++ + S+YCK+D Y+ G++++L+AS +TR
Sbjct: 50 GVTSMDEFLEEFFHTVYEKKKQAHE-SNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITR 108
Query: 61 ALGGKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G + SI+ N+ ML+ GR++LGVGI FGNQ+VPLYLSE+AP
Sbjct: 109 NYGRRASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTH 168
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RG N+ FQ+ GI +AN++NYGTQ++K WGW++SL +AA PA ++T+G FLPET
Sbjct: 169 LRGGLNMMFQLATTIGIFTANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPET 227
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+++R ++ ++L ++ GT +V AEL+D++ AS + +I HPF+ I+Q+++RPQL
Sbjct: 228 PNSLVERGLT-ERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQL 286
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
VMAI +P FQ +TG+N I FYAPVLF+T+ N SL SAL TG + +S + + L D
Sbjct: 287 VMAICMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSAL-TGAVLVLSTFISIGLVD 345
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWG 360
+LGR+ L + GGIQM++ QV++ I+ + GD+ S GY+ ++++ IC++ FG+SWG
Sbjct: 346 RLGRRALLITGGIQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWG 405
Query: 361 PLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420
PLGW +PSEIFPLE RSAGQSITVAV LLFT ++AQ FL +LC FK G+F FF GW+TVM
Sbjct: 406 PLGWTIPSEIFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVM 465
Query: 421 TTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDD---VGEESK 461
T FV+F LPETK VPIE M +W +HWFW+K D + +ESK
Sbjct: 466 TIFVYFLLPETKGVPIEEMTLLWSKHWFWKKVLPDATNLEDESK 509
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
Identities = 224/457 (49%), Positives = 310/457 (67%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDXXXXXXXXXXXYITGILASLIASSVTR 60
GVTSME FL KFFP+V +M++ + YCKFD Y+ ++AS +AS +TR
Sbjct: 48 GVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITR 107
Query: 61 ALGGKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G KVS+ I N+ MLI GRLLLGVG+ F NQS P+YLSEMAP K
Sbjct: 108 KHGRKVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAK 167
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGA NIGFQ+ + GIL ANL+NYGT K+ GW++SL +AA PA ++ IGS LP+T
Sbjct: 168 IRGALNIGFQMAITIGILVANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDT 226
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS+++R +++A++ML+++ G +V E +DLI A +K + +P+K I++ KYRP L
Sbjct: 227 PNSMLER-GKNEEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPAL 285
Query: 241 VMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD 300
+ IPFFQQ+TG+N+I FYAPVLF+T+ ++ +L MSA++TG + +S + + D
Sbjct: 286 IFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDDAAL-MSAVITGVVNMLSTFVSIYAVD 344
Query: 301 KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSI--GYAYLILVLICVYKAGFGFS 358
+ GR++LFL GGIQM + Q+++GS + A+ G G ++ A IL ICVY AGF +S
Sbjct: 345 RYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWS 404
Query: 359 WGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLT 418
WGPLGWLVPSEI PLEIR AGQ+I V+V + FT L+ Q FL MLCH K G+F+FF +
Sbjct: 405 WGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVA 464
Query: 419 VMTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDD 455
+MT F++F LPETK VPIE M +VW++HWFW+K+ +
Sbjct: 465 IMTVFIYFLLPETKGVPIEEMGRVWKQHWFWKKYIPE 501
|
|
| TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
Identities = 208/459 (45%), Positives = 304/459 (66%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDXXXXXXXXXXXYITGILASLIASSVTR 60
GVT+M+PFL+KFFP V +K E K + YC +D Y+ G++ASL+AS +T
Sbjct: 47 GVTTMKPFLEKFFPSVLKKASE-AKTNVYCVYDSQLLTAFTSSLYVAGLVASLVASRLTA 105
Query: 61 ALGGKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
A G + ++++ NI MLI GR+LLG G+ F NQ+ P+YLSE+APP+
Sbjct: 106 AYGRRTTMILGGFTFLFGALINGLAANIAMLISGRILLGFGVGFTNQAAPVYLSEVAPPR 165
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RGAFNIGF ++ G+++ANL+NYGT + GW +ISL +AA PA+I+T+G LF+ +T
Sbjct: 166 WRGAFNIGFSCFISMGVVAANLINYGTDSHRNGW--RISLGLAAVPAAIMTVGCLFISDT 223
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGT---ADVQAELEDLIRASSDSKNINHPF--KKIIQRK 235
P+S++ R H +A L ++ G ADV+ EL +L+R+S + K I+QR+
Sbjct: 224 PSSLLAR-GKHDEAHTSLLKLRGVENIADVETELAELVRSSQLAIEARAELFMKTILQRR 282
Query: 236 YRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILP 295
YRP LV+A++IP FQQ+TG+ + +FYAPVLFR++ +L+ + + G + S +L
Sbjct: 283 YRPHLVVAVVIPCFQQLTGITVNAFYAPVLFRSVGFGSGPALI-ATFILGFVNLGSLLLS 341
Query: 296 MILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSI--GYAYLILVLICVYKA 353
++ D+ GR+ LF+ GGI ML+ Q+ + ++A +G G + GYA ++VL+C+Y A
Sbjct: 342 TMVIDRFGRRFLFIAGGILMLLCQIAVAVLLAVTVGATGDGEMKKGYAVTVVVLLCIYAA 401
Query: 354 GFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFF 413
GFG+SWGPL WLVPSEIFPL+IR AGQS++VAV T ++QTFLA LC FK G F F+
Sbjct: 402 GFGWSWGPLSWLVPSEIFPLKIRPAGQSLSVAVNFAATFALSQTFLATLCDFKYGAFLFY 461
Query: 414 GGWLTVMTTFVHFFLPETKNVPIELMDKVWREHWFWRKF 452
GGW+ MT FV FLPETK +P++ M +VW +HW+W++F
Sbjct: 462 GGWIFTMTIFVIMFLPETKGIPVDSMYQVWEKHWYWQRF 500
|
|
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1077 (384.2 bits), Expect = 5.5e-109, P = 5.5e-109
Identities = 206/459 (44%), Positives = 297/459 (64%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDXXXXXXXXXXXYITGILASLIASSVTR 60
GVTSM+ FLK+FFP + ++ + +DYCK+D Y G++++ AS VTR
Sbjct: 49 GVTSMDDFLKEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTR 108
Query: 61 ALGGKVSILIXXXXXXXXXXXXXXXXNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120
G + SIL+ NI MLI GR+ LG+GI FGNQ+VPLYLSEMAP K
Sbjct: 109 IYGRRGSILVGSVSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAK 168
Query: 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180
RG N FQ+ GIL ANL+NY T++I WGW++SL +A PA ++ +G L LPET
Sbjct: 169 IRGTVNQLFQLTTCIGILVANLINYKTEQIHP-WGWRLSLGLATVPAILMFLGGLVLPET 227
Query: 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQL 240
PNS++++ +KA+ +L +V GT +++AE +DL+ AS ++ + +PF+ ++ R+ RPQL
Sbjct: 228 PNSLVEQ-GKLEKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQL 286
Query: 241 VM-AILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILA 299
V+ AI +P FQQ+TG+N I FYAPV+F+++ + SL+ S + + V+AI+ M A
Sbjct: 287 VIGAIGLPAFQQLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAAL-VVAAIMSMYSA 345
Query: 300 DKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSW 359
DK GR+ L L ++M V++G +A + G+ +++VLIC++ +G SW
Sbjct: 346 DKFGRRFLLLEASVEMFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICLFVLAYGRSW 405
Query: 360 GPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTV 419
GP+GWLVPSE+FPLE RSAGQS+ V V L FT+L+AQ FL LCH K G+F F G +
Sbjct: 406 GPMGWLVPSELFPLETRSAGQSVVVCVNLFFTALIAQCFLVSLCHLKYGIFLLFAGLILG 465
Query: 420 MTTFVHFFLPETKNVPIELMDKVWREHWFWRKFFDDVGE 458
M +FV+F LPETK VPIE + +WR+HW W+K+ +DV E
Sbjct: 466 MGSFVYFLLPETKQVPIEEVYLLWRQHWLWKKYVEDVDE 504
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q41144 | STC_RICCO | No assigned EC number | 0.5458 | 0.9721 | 0.8661 | N/A | no |
| Q8L7R8 | STP3_ARATH | No assigned EC number | 0.6367 | 0.9592 | 0.8696 | yes | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.7152 | 0.9785 | 0.8941 | N/A | no |
| Q10710 | STA_RICCO | No assigned EC number | 0.5084 | 0.9914 | 0.8850 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 466 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-86 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 7e-80 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 1e-46 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-11 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-10 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-09 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 9e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-07 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 1e-05 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 0.003 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 4e-86
Identities = 141/450 (31%), Positives = 227/450 (50%), Gaps = 28/450 (6%)
Query: 1 GVTSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR 60
++ F K+F + + V L + S + ++ SL A +
Sbjct: 21 AFLTLIKFFKRFGALTSIGACAASTV---------LSGLIVSIFSVGCLIGSLFAGKLGD 71
Query: 61 ALGGKVSILIGGVAFLAGSALGGSA--FNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAP 118
G K S+LIG V F+ G+ L G A + YMLI GR+++G+G+ + VP+Y+SE+AP
Sbjct: 72 RFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAP 131
Query: 119 PKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLP 178
K RGA +Q+ + GIL A ++ G K GW+I L + PA +L IG LFLP
Sbjct: 132 KKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLP 191
Query: 179 ETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKK--IIQRKY 236
E+P ++ + ++A +L ++ G +DV E+++ + S +
Sbjct: 192 ESPRWLVLKGK-LEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTV 250
Query: 237 RPQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPM 296
R +L+M +++ FQQ+TG+N I +Y+P +F T+ LS+ S LVT +G V+ +
Sbjct: 251 RQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSD------SLLVTIIVGVVNFVFTF 304
Query: 297 I---LADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKA 353
I L D+ GR+ L LLG M + +++G A LG S G + +V I ++ A
Sbjct: 305 IAIFLVDRFGRRPLLLLGAAGMAICFLVLG---VALLGVAK--SKGAGIVAIVFILLFIA 359
Query: 354 GFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFF 413
F WGP+ W++ SE+FPL +R +I A L L+ F + VF F
Sbjct: 360 FFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVF 419
Query: 414 GGWLTVMTTFVHFFLPETKNVPIELMDKVW 443
G L + FV FF+PETK +E +D+++
Sbjct: 420 AGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 7e-80
Identities = 136/423 (32%), Positives = 212/423 (50%), Gaps = 17/423 (4%)
Query: 27 SDYCKFDSQLLTSLT-SSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS- 84
S S L L S + G + +L A ++ G K S+LI + F+ G+ L G
Sbjct: 62 SANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA 121
Query: 85 --AFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANL 142
A ++ MLI GR+LLG+G+ + VP+YLSE+AP RGA +Q+ + GIL A
Sbjct: 122 AFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181
Query: 143 LNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVH 202
G + GW+I L + PA +L +G FLPE+P ++ + ++A K L R+
Sbjct: 182 FGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGK-GRVEEARKSLARLR 240
Query: 203 GTADVQAELEDLIRA-------SSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGV 255
GT+ EL D + S + R+ R +L + +++ +FQQ TG+
Sbjct: 241 GTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGI 300
Query: 256 NIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQM 315
N I +Y+P +F +S + + L+S ++ G + + + L D+ GR+ L L+G M
Sbjct: 301 NAIMYYSPTIFENAGVSTDHAFLVS-IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGM 359
Query: 316 LVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEI 375
+ ++G + A+ + S + +V I ++ A F WGP+ W++ SEIFPL +
Sbjct: 360 AICLFVLGILGASFVTGSSKSS---GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL 416
Query: 376 RSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGV-FFFFGGWLTVMTTFVHFFLPETKNV 434
R G SI VA L +V F ML G F FFGG + FV+FFLPETK
Sbjct: 417 RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGR 476
Query: 435 PIE 437
+E
Sbjct: 477 TLE 479
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 1e-46
Identities = 122/453 (26%), Positives = 202/453 (44%), Gaps = 71/453 (15%)
Query: 33 DSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS-------- 84
+ LL +S I I+ + + G + S+ I V F SALG +
Sbjct: 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI-SALGSAWPEFGFTS 111
Query: 85 ----------AFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRG---AFNIGFQV 131
F IY R++ G+G+ + P+Y++E+AP RG +FN Q
Sbjct: 112 IGPDNTGYVPEFVIY-----RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFN---QF 163
Query: 132 CVATGILSANLLNYGTQKIKGG----W----GWKISLAMAAAPASILTIGSLFLPETPNS 183
+ G L +NY I W GW+ A A PA + + F+PETP
Sbjct: 164 AIIFGQLVVYFVNYF---IARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRY 220
Query: 184 IIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINH----PFKKIIQRKYRPQ 239
++ R ++AE +L+++ G L++ I+ S D F +
Sbjct: 221 LMSR-GKQEQAEGILRKIMGNTLATQALQE-IKHSLDHGRKTGGKLLMFGVGV------- 271
Query: 240 LVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILA 299
+V+ +++ FQQ G+N++ +YAP +F+T+ S + +L + ++ G I +L ++
Sbjct: 272 IVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTV 330
Query: 300 DKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSW 359
DK GRK L ++G + M + +G+ Q G L+ +L Y A F SW
Sbjct: 331 DKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-------PGIVALLSML--FYVAAFAMSW 381
Query: 360 GPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAM------LCHFKAGVFFFF 413
GP+ W++ SEIFP IR +I VA + V+ TF M + HF G ++
Sbjct: 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWI 441
Query: 414 GGWLTVMTT-FVHFFLPETKNVPIELMDKVWRE 445
G + V+ F+ F+PETK +E M+ +W
Sbjct: 442 YGCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-12
Identities = 85/409 (20%), Positives = 160/409 (39%), Gaps = 47/409 (11%)
Query: 40 LTSSLYITGILA-SLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLL 98
LT S + G+L S + ++ G K +L+ + L + N + + RLL+
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190
Query: 99 GVGI-DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWK 157
G+GI Q+V L E P K R QV + G++ L+ Y W+
Sbjct: 191 GMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWR 243
Query: 158 ISLAMAAAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRA 217
+ P + + S F+PE+P +I + ++A K+LQR+ + E L +
Sbjct: 244 WLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLPAEVLSLS 302
Query: 218 SSDSKNINHPFKKIIQ----RKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSE 273
+ + + R + +++ F T S+Y VL L
Sbjct: 303 LEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF---TTAF---SYYGLVLD-LGNLGG 355
Query: 274 NTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333
N + + ++G + + ++ ++L D+LGR+ + +++
Sbjct: 356 N--IYLDLFISGLVELPAKLITLLLIDRLGRR------YTMAASLLLAGVALLLLLF--- 404
Query: 334 GGFSIGYAYLILVLICVYKAGF--GFSWGPLGWLVPSEIFPLEIRSAGQSITVA---VGL 388
+ +L L + K G F + +L +E++P +R+ G + VG
Sbjct: 405 --VPVDLYFLRTALAVLGKFGITSAFQ---MVYLYTAELYPTVVRNLGVGVCSTMARVGS 459
Query: 389 LFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMTTFVHFFLPETKNVPIE 437
+ + + +L F V F G L ++ + FLPETK VP+
Sbjct: 460 IISPFLV--YLGEKWLFLPLVLF---GGLALLAGILTLFLPETKGVPLP 503
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 32 FDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYML 91
+ + S+ + L SL+A ++ G + +L+G + F GS L A ++++L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 92 IFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK 151
+ GR LLG+G + ++E PPK RG F G L LL +
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES- 149
Query: 152 GGWGWKISLAMAAAPASILTIGSLFLP 178
GW+ + A +L + LFL
Sbjct: 150 --LGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 71/338 (21%), Positives = 123/338 (36%), Gaps = 53/338 (15%)
Query: 90 MLIFGRLL--LGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGT 147
+L+ RL+ +G ++G + LYL+E APP RG + QV G+L A L
Sbjct: 98 LLLLARLIQGFSLGGEWGGAA--LYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLL 155
Query: 148 QKIKGG-----WGWKISLAMAAAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVH 202
+ G WGW+I ++A I L ETP + H+K
Sbjct: 156 SYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP-VFEKAQEKHKKKRG------ 208
Query: 203 GTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYA 262
P + + K+R ++ + + T I ++
Sbjct: 209 ------------------------PIAETL-TKHRKPFLLGLGLVIATTTTFYLITTYLP 243
Query: 263 PVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMI 322
L +T+ LS N++LL+ L + L+D++GR+ + ++ + + V +
Sbjct: 244 TYLTQTLGLSANSALLVLMLSLILFFITIPLSGA-LSDRIGRRPVLIIFTVLAALLAVPL 302
Query: 323 GSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSI 382
+ G L L+ G GP+G +P E+FP E+R G S+
Sbjct: 303 LMALLDS---------GSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASL 352
Query: 383 TVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420
+ A A L + G +L +
Sbjct: 353 AYNLAGAIFGGFAPYIAAALVAMTGDW-YAIGYYLAAL 389
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 74/335 (22%), Positives = 127/335 (37%), Gaps = 42/335 (12%)
Query: 64 GKVSILIGGVA-FLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCR 122
G+ +L+ + F + L A N+ L+ R L G+G+ ++ +SE AP + R
Sbjct: 80 GRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFR 139
Query: 123 GAFNIGFQVCVATGILSANLLNYGTQKIKGGW-----GWKISLAMAA-APASILTIGSLF 176
G G L GW GW+ + AP +L + F
Sbjct: 140 GTAVGLMFCGYPIGAAVGGFL--------AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRF 191
Query: 177 LPETPNSIIQRTNDHQKAEKMLQRVHGTAD--VQAELEDLIRASSDSKNINHPFKKIIQR 234
LPE+ + ++ + + E + + V+ A L + FK + Q
Sbjct: 192 LPESIDFLVSK-----RPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQG 246
Query: 235 KYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAIL 294
K V+ L+ F V GV ++ + P L + S + + AL G G + +I+
Sbjct: 247 KTARITVLLWLLYFMLLV-GVYFLTNWLPKLMVELGFSLSLAATGGALFNFG-GVIGSII 304
Query: 295 PMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAG 354
LAD+LG +V + ++ A G ++ L+L+L + AG
Sbjct: 305 FGWLADRLGPRV-------------TALLLLLGAVFAVLVGSTLFSPTLLLLLGAI--AG 349
Query: 355 FGFSWGPLGWLVPS--EIFPLEIRSAGQSITVAVG 387
F F G L +P IR+ G + +G
Sbjct: 350 F-FVNGGQSGLYALMALFYPTAIRATGVGWAIGIG 383
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 9e-08
Identities = 62/358 (17%), Positives = 127/358 (35%), Gaps = 46/358 (12%)
Query: 32 FDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYML 91
+ L ++ + LA +A ++ G + +LIG + F G L A ++++L
Sbjct: 29 ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88
Query: 92 IFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK 151
+ R+L G+G + +++ PP+ RG G LL +
Sbjct: 89 LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL---LA 145
Query: 152 GGWGWKISLAMAAAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAEL 211
+GW+ + + A A + + + L P +R ++A L
Sbjct: 146 SLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPL------------- 192
Query: 212 EDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKL 271
+ V+ +L+ + Y P+ + L
Sbjct: 193 ------------------VPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGL 234
Query: 272 SENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLG 331
S + L+ L G +G + +L L+D+LGR+ LL + ++++ + + +
Sbjct: 235 SALLAGLLLGL-AGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALL------ 287
Query: 332 DHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLL 389
+ +LV + + G G + L + S++ P E R + G L
Sbjct: 288 ----SLTESSLWLLVALLLLGFGAGLVFPAL-NALVSDLAPKEERGTASGLYNTAGSL 340
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 13/192 (6%)
Query: 238 PQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMI 297
+L++ + + FF G + Y P+ + + + + G G + A+L +
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 298 LADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGF 357
L+D+LGR+ L LL G +L++ + + + L+LV + + G GF
Sbjct: 234 LSDRLGRRRLLLLIG--LLLAALGLLLL----------ALAPSLALLLVALLLLGFGLGF 281
Query: 358 SWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417
++ L L SE+ P E R + G L +L +L G F L
Sbjct: 282 AFPALLTLA-SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL 340
Query: 418 TVMTTFVHFFLP 429
++ + LP
Sbjct: 341 ALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 98/435 (22%), Positives = 151/435 (34%), Gaps = 97/435 (22%)
Query: 73 VAFLAGSALGGSAFNIYM--LIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQ 130
+A +A GS+ M L F R LGVGI + SE A K RGA
Sbjct: 98 IATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVF 157
Query: 131 VCVATGILSANL------------LNY--------GTQKIKGGWGWKISLAMAAAPASIL 170
GIL+ + L G+ + W+I + A PA +
Sbjct: 158 AMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA 217
Query: 171 TIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSD-----SKNIN 225
L +PETP + T D K + +D+ A L+ I A D S +
Sbjct: 218 LYFRLTIPETP----RYTADVAKDVEQ-----AASDMSAVLQVKIEAEPDEVEKASTAVE 268
Query: 226 HP-------FKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLS------ 272
P F + ++ L+ F I+FY L + + LS
Sbjct: 269 VPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLD------IAFYGVNLNQKVILSAIGYSP 322
Query: 273 ---ENTSL--LMSALVTGGIGTVSAILP-----MILADKLGRKVLFLLGGIQMLVSQVMI 322
N + L V I ++ +P + L D +GRK + L+G + V ++
Sbjct: 323 PAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL 382
Query: 323 GSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGP--LGWLVPSEIFPLEIRSAGQ 380
G L HG L A F ++GP ++VP E+FP RS
Sbjct: 383 G-FAYNHLSTHG-----------FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAH 430
Query: 381 SITVAVGLLFTSLVAQTFLAML------------CHFKAGVFFFFGG--WLTVMTTFVHF 426
I+ A G +++ Q L + V F +L ++ T +
Sbjct: 431 GISAASGKA-GAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLL-- 487
Query: 427 FLPETKNVPIELMDK 441
+PETK +E +
Sbjct: 488 -IPETKGKSLEELSG 501
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 56/357 (15%), Positives = 111/357 (31%), Gaps = 25/357 (7%)
Query: 31 KFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYM 90
+ + S+ ++ + G + ++ + V + + L A
Sbjct: 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS 84
Query: 91 LIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKI 150
L R+LLG + L ++ P R F G + L I
Sbjct: 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW---I 141
Query: 151 KGGWGWKISLAMAAAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAE 210
+ W+ + + I + L I K T + +
Sbjct: 142 LIHFSWQWAFIIEGVLGIIWGVLWLKF-------IPDPPQKAKWL--------TEEEKYI 186
Query: 211 LEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTIK 270
+ + A K + P K I+ + + V + + F G+ + P +
Sbjct: 187 VVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQER 246
Query: 271 LSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQL 330
A + G +G + IL L+D L R+ L+ + +I ++ + L
Sbjct: 247 GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKT----AIIAGLVLSLL 302
Query: 331 GDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVG 387
+ Y L L+ + FG G +GW + S+ P I + ++G
Sbjct: 303 M-FATNYVNIPYAALALVAL--GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLG 356
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 50 LASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSV 109
L + A + R G + S+ + + AG + S + +L G LL G GI N +
Sbjct: 62 LFAPAAPRLARRFGEERSLFLALLLIAAGILIR-SLGGLPLLFLGTLLAGAGIAVINVLL 120
Query: 110 PLYLSEMAP---PKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAP 166
P + P G ++ A A L + GW+ +L A
Sbjct: 121 PSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPL------AQHSGGWRGALGFWALL 174
Query: 167 A 167
A
Sbjct: 175 A 175
|
Length = 395 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.98 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.98 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.98 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.98 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.98 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.98 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.98 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.94 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.93 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.93 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.92 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.91 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.91 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.9 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.88 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.88 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.88 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.88 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.87 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.86 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.86 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.86 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.84 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.84 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.83 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.81 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.79 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.72 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.71 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.71 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.69 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.69 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.68 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.63 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.55 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.54 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.54 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.52 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.51 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.5 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.5 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.48 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.46 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.46 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.43 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.42 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.42 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.41 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.4 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.4 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.39 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.39 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.39 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.39 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.35 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.34 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.34 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.33 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.33 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.32 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.32 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.31 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.31 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.31 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.31 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.3 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.3 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.29 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.28 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.28 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.27 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.27 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.27 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.26 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.26 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.25 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.25 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.24 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.24 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.24 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.24 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.22 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.22 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.21 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.21 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.21 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.21 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.2 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.2 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.2 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.2 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.2 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.19 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.19 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.19 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.19 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.19 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.18 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.17 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.16 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.15 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.15 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.15 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.14 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.14 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.13 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.12 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.11 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.11 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.09 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.08 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.08 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.08 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.07 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.05 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.04 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.04 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.04 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.02 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.02 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.01 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.01 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.0 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.98 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.95 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.95 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.94 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.93 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.92 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.92 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.91 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.88 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.88 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.88 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.87 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.87 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.82 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.82 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.81 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.81 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.8 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.79 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.77 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.72 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.71 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.69 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.66 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.64 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.62 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.6 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.6 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.59 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.54 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.51 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.49 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.44 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.42 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.4 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.39 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.37 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.34 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.33 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.27 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.27 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.2 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.19 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.18 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.15 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.14 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.1 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.02 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.97 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.85 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.79 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.68 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.61 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.5 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.44 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.38 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.35 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.2 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.2 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.16 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.0 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.93 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.9 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.5 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.37 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.24 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.1 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.07 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.54 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.45 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 95.34 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 94.19 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 93.88 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 93.58 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.5 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.36 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 92.52 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 92.42 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 92.33 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 92.27 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 91.57 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 90.96 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 90.57 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 89.16 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 80.55 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=345.92 Aligned_cols=430 Identities=26% Similarity=0.439 Sum_probs=361.1
Q ss_pred CCchHHHHhhcccccccccCCccccccccCCcc----hhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHH
Q 048207 3 TSMEPFLKKFFPEVNRKMREDTKVSDYCKFDSQ----LLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAG 78 (466)
Q Consensus 3 ~~~~~f~~~f~~~~~~~~~~~~~i~~~~~~s~~----~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 78 (466)
++....+.+|.++.....++.+ ++++ ..+.+.+++.+|.++|+++.++++||+|||..+.++.++..++
T Consensus 31 Nap~~~i~~f~n~t~~~r~g~~-------~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~ 103 (485)
T KOG0569|consen 31 NAPQELIKSFINETLIERYGLP-------LSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLA 103 (485)
T ss_pred CchHHHHHHHHHHHHHHhcCCC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 3444556666655443333211 2333 3577789999999999999999999999999999998888888
Q ss_pred Hhhhhhc---cchhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCC-Cc
Q 048207 79 SALGGSA---FNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKG-GW 154 (466)
Q Consensus 79 ~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~ 154 (466)
.++..++ +++.+++++|++.|+..|......+.++.|..|++.||....+.+.+..+|.+++..++. .+..+ ..
T Consensus 104 ~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l--~~ilGt~~ 181 (485)
T KOG0569|consen 104 ALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL--PSLLGTED 181 (485)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc--HHhcCCCc
Confidence 7776654 789999999999999999999999999999999999999999999999999999988763 33333 24
Q ss_pred chHHHHHhhhHHHHHHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhcc---ccCCcchHHh
Q 048207 155 GWKISLAMAAAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDS---KNINHPFKKI 231 (466)
Q Consensus 155 ~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 231 (466)
.|++.+.+..+++++..+...++||||+|+..++++.+||++.++..++.++.+++.++..++.+++ ++++.+++++
T Consensus 182 ~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~ 261 (485)
T KOG0569|consen 182 LWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQL 261 (485)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHH
Confidence 6999999999999999999999999999999966659999999999999987665555443332222 2245678888
Q ss_pred hhh-hhhhHHHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehh
Q 048207 232 IQR-KYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLL 310 (466)
Q Consensus 232 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 310 (466)
+++ ..+++..+.+.+....++.+.+...+|...++++.|++...+. +.....++..++.++++.+++||+|||++++.
T Consensus 262 ~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~-~an~~~g~v~~~~t~~~~~lid~~gRRpLll~ 340 (485)
T KOG0569|consen 262 LKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQ-YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLI 340 (485)
T ss_pred hcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 875 4556677778888888999999999999999999999999998 89999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHH
Q 048207 311 GGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLF 390 (466)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 390 (466)
+..++.+..+++.......... .....+..+.+.+.+...++.+.+|+++.+.+|++|++.|++++++.....++.
T Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~ 416 (485)
T KOG0569|consen 341 SLSLMAVALLLMSIALFLSNSF----GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLS 416 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence 9999998888887665442111 012233457788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccceehhhHHHHHHHHHhhheecccCCCCCHHHHHHHHccc
Q 048207 391 TSLVAQTFLAMLCHFKAGVFFFFGGWLTVMTTFVHFFLPETKNVPIELMDKVWREH 446 (466)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (466)
.++....+..+.+..|...++.+.+.+++..+.++..+||||+|+.+|+.++.+++
T Consensus 417 ~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 417 NFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999999999999888999999999999999999999999999998887766
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=336.06 Aligned_cols=398 Identities=19% Similarity=0.225 Sum_probs=284.2
Q ss_pred ccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccc------hhHHHHHHHHhhhhhh
Q 048207 30 CKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFN------IYMLIFGRLLLGVGID 103 (466)
Q Consensus 30 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g 103 (466)
.+.++.+.+++.+.+.++..++++++|+++||+|||+++.++.+++.++.++++++++ ++.++++|+++|++.|
T Consensus 51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence 3456778899999999999999999999999999999999999999999999998876 7899999999999999
Q ss_pred hhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhccc--------------------CCCcchHHHHHhh
Q 048207 104 FGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKI--------------------KGGWGWKISLAMA 163 (466)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~--------------------~~~~~wr~~f~~~ 163 (466)
...+....+++|++|+++|++++++.+....+|.++++.++..+... ..+++||++|.+.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~ 210 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG 210 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999887654321 0124799999999
Q ss_pred hHHHHHHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccch--HHHHHHHHHHhhccccCCcchHHhhhhhhhh---
Q 048207 164 AAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADV--QAELEDLIRASSDSKNINHPFKKIIQRKYRP--- 238 (466)
Q Consensus 164 ~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 238 (466)
++++++..+..+++||||+|+..++++++++++.+++..+.+.. .++.++.+ ++++..+.++++++++...+
T Consensus 211 ~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~ 287 (502)
T TIGR00887 211 AVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKAS---TAVEVPKASWSDFFTHFFKWRHG 287 (502)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchh---ccccchhhhHHHHHHHHhhhHHH
Confidence 99988888888899999999998888555666666665443211 11111111 11111123566766532211
Q ss_pred HHHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhh-----------HHHHHHHHHHHHHhhhhhhhhhhhcCCeee
Q 048207 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSL-----------LMSALVTGGIGTVSAILPMILADKLGRKVL 307 (466)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 307 (466)
+..+......+.....++....|.|.++++.|++..... ........++.+++.++.++++||+|||+.
T Consensus 288 ~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~ 367 (502)
T TIGR00887 288 KHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI 367 (502)
T ss_pred HHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH
Confidence 222222222232333445667778998888888654221 012334455677788999999999999999
Q ss_pred ehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHH
Q 048207 308 FLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVG 387 (466)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 387 (466)
+..+..+..++..++...... .... ......++....++.+..+..+.+.+|.+|++.|+++.|+.+.++
T Consensus 368 l~~~~~~~~~~~~~l~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~ 437 (502)
T TIGR00887 368 QLMGFFILTVLFFVLGFAYNH---------LSTH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASG 437 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------cchh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHh
Confidence 888777777666655543210 0011 111222222223344556666788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc----------cc-ceehhhHHHHHHHHHhhheecccCCCCCHHHHHH
Q 048207 388 LLFTSLVAQTFLAMLCHF----------KA-GVFFFFGGWLTVMTTFVHFFLPETKNVPIELMDK 441 (466)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
++++++++.+.+.+.+.. +. ..++++++++++ +.+.++++||++++++||+++
T Consensus 438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~i~~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 438 KAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFL-GILFTLLIPETKGKSLEELSG 501 (502)
T ss_pred hhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHH-HHHHheEeccCCCCCHHhhhC
Confidence 999999999999998743 22 233444444444 344557789999998877653
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=325.32 Aligned_cols=407 Identities=26% Similarity=0.463 Sum_probs=296.8
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc------------cchhHHHH
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA------------FNIYMLIF 93 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~------------~~~~~l~~ 93 (466)
..+++++++.+.+++.+++.++..++++++|+++||+|||++++++.+++.++.++++++ ++++.+++
T Consensus 46 ~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 125 (479)
T PRK10077 46 QNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI 125 (479)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHH
Confidence 345569999999999999999999999999999999999999999999999998888763 22567889
Q ss_pred HHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhccc-----CCCcchHHHHHhhhHHHH
Q 048207 94 GRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKI-----KGGWGWKISLAMAAAPAS 168 (466)
Q Consensus 94 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~-----~~~~~wr~~f~~~~~~~~ 168 (466)
+|+++|++.|...+...++++|++|+++|++++++.+.+..+|.++++.++..+... .+.++||++|++.+++.+
T Consensus 126 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~ 205 (479)
T PRK10077 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPAL 205 (479)
T ss_pred HHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887655421 123689999999888887
Q ss_pred HHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHH
Q 048207 169 ILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPF 248 (466)
Q Consensus 169 ~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (466)
+..+..+++||+|+++..+++ .+++++..++..+.++.+...++..+..+++.. ..+..+. ..............
T Consensus 206 ~~~~~~~~l~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~ 280 (479)
T PRK10077 206 LFLMLLYFVPETPRYLMSRGK-QEQAEGILRKIMGNTLATQALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSV 280 (479)
T ss_pred HHHHHHHcCCCCcHHHHHcCC-HHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHH
Confidence 777777789999998877666 667666666665444333222222221111110 0011111 01111122222233
Q ss_pred HHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHh
Q 048207 249 FQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAA 328 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (466)
+....+++...++.|.+.++.|.+..... ......++..+++.++.++++||+|||+.+..+..+..++.+++.....
T Consensus 281 ~~~~~~~~~~~~~~p~i~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~- 358 (479)
T PRK10077 281 FQQFVGINVVLYYAPEIFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY- 358 (479)
T ss_pred HHHHhChhHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh-
Confidence 33444455667788988888888877666 6667788889999999999999999999999988888887777654421
Q ss_pred hcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH------
Q 048207 329 QLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAML------ 402 (466)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~------ 402 (466)
............++++.+++..+.+..+.+++|.+|++.|++++|+.+..++++..+++.+.+.+.
T Consensus 359 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~ 430 (479)
T PRK10077 359 --------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV 430 (479)
T ss_pred --------cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh
Confidence 111122333444555555555566766788899999999999999999999999999887776554
Q ss_pred hhcccc-eehhhHHHHHHHHHhhheecccCCCCCHHHHHHHHcccc
Q 048207 403 CHFKAG-VFFFFGGWLTVMTTFVHFFLPETKNVPIELMDKVWREHW 447 (466)
Q Consensus 403 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (466)
+..++. .+..++..+.+..++.+++.||+|+++.+|.++.++++.
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 476 (479)
T PRK10077 431 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPET 476 (479)
T ss_pred hhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhcc
Confidence 344443 344445555555556666788999998888877765543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=335.83 Aligned_cols=396 Identities=15% Similarity=0.167 Sum_probs=298.0
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.++++++++..+.+++.++++++.+++++++|+++||+|||+++++++++.+++.++++++++++.++++|++.|++.
T Consensus 190 lp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~ 269 (742)
T TIGR01299 190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGI 269 (742)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC----------CCcchHHHHHhhhHHHHHHHH
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK----------GGWGWKISLAMAAAPASILTI 172 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----------~~~~wr~~f~~~~~~~~~~~~ 172 (466)
|+..+...+++.|++|+++|++.++++..++.+|.++++.++..+.... ...+||+.+++.++++++.++
T Consensus 270 g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll 349 (742)
T TIGR01299 270 GGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIG 349 (742)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998776554321 124699999999998888888
Q ss_pred HhhcccCChhhhhhcCCcHHHHHHHHHHHhCccch----HHH---HHHHHHHhhc------cccC---------------
Q 048207 173 GSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADV----QAE---LEDLIRASSD------SKNI--------------- 224 (466)
Q Consensus 173 ~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~------~~~~--------------- 224 (466)
..+++||||+|+..+++ .+++.+.++++.+.+.. +.. .+..+...+. +++.
T Consensus 350 ~~~~lPESPrwL~~~gr-~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (742)
T TIGR01299 350 ALTFMPESPRFFLENGK-HDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEG 428 (742)
T ss_pred HHHHcCCCHHHHHHCCC-HHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhh
Confidence 88889999999999988 89999999988765521 110 0111110000 0000
Q ss_pred ---CcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHHHhhh--------------------------------
Q 048207 225 ---NHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTI-------------------------------- 269 (466)
Q Consensus 225 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 269 (466)
..+++++++.+.+++.++...++ +.....++.+..|.|.++++.
T Consensus 429 ~~~~~~~~~lf~~~~~~~tl~l~~~w-f~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (742)
T TIGR01299 429 GGIWGNFLRCFNPEVREITIKLMGVW-FTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHR 507 (742)
T ss_pred hhHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhcc
Confidence 01345566666665555555554 455557889999999875431
Q ss_pred ----------CC-----C----------------c---------------------------------------------
Q 048207 270 ----------KL-----S----------------E--------------------------------------------- 273 (466)
Q Consensus 270 ----------~~-----~----------------~--------------------------------------------- 273 (466)
|+ . .
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 587 (742)
T TIGR01299 508 GGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDF 587 (742)
T ss_pred ccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccC
Confidence 00 0 0
Q ss_pred --c----hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHH
Q 048207 274 --N----TSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVL 347 (466)
Q Consensus 274 --~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
. ...+....+..++.+++.++.++++||+|||+++.++.++.+++.+++.+.. . ....++.
T Consensus 588 ~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~------------s-~~~ll~~ 654 (742)
T TIGR01299 588 DGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN------------S-ESAMIAL 654 (742)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc------------c-HHHHHHH
Confidence 0 0112445667788999999999999999999999888888888777666442 1 2223333
Q ss_pred HHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHHHHhhhee
Q 048207 348 ICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMTTFVHFF 427 (466)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (466)
.++.+++.+..+. ..+.+++|++|++.|++++|+.+..+.+|++++|++.+.+.+.. ...++++.+++.+++.++.++
T Consensus 655 ~~l~g~~~~~~~~-~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll~~ll~~~ 732 (742)
T TIGR01299 655 LCLFGGLSIAAWN-ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALACGGLLALK 732 (742)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHh
Confidence 3444444443343 34677899999999999999999999999999999999887654 333344444444455555556
Q ss_pred cccCCCCC
Q 048207 428 LPETKNVP 435 (466)
Q Consensus 428 ~~~~~~~~ 435 (466)
+||++++.
T Consensus 733 LPET~~~~ 740 (742)
T TIGR01299 733 LPDTRGQV 740 (742)
T ss_pred CCCCcccc
Confidence 79988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=320.72 Aligned_cols=408 Identities=33% Similarity=0.600 Sum_probs=346.4
Q ss_pred chhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHHHH
Q 048207 35 QLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLS 114 (466)
Q Consensus 35 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 114 (466)
.+.+++.++..++..+++++.|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|......+.+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 56699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChhhhhhcCCcHHHH
Q 048207 115 EMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPNSIIQRTNDHQKA 194 (466)
Q Consensus 115 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~ 194 (466)
|..|++.||...+..+....+|..++..++....+. . ++||..+.+..+++++..+..+++||||+|+.++++ .+++
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~-~~~a 245 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGR-LEEA 245 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCC-hHHH
Confidence 999999999999999999999999997777666554 2 579999999999999988888889999999999888 9999
Q ss_pred HHHHHHHhC--ccchHHHHHHHHHHhhcc---ccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHHHhhh
Q 048207 195 EKMLQRVHG--TADVQAELEDLIRASSDS---KNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTI 269 (466)
Q Consensus 195 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (466)
++.++++++ +.+.+.+.++.+.....+ ...+..+.+++++..+++..+...+..+.+++++....+|.+.+++..
T Consensus 246 ~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~ 325 (513)
T KOG0254|consen 246 KRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA 325 (513)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc
Confidence 999999988 445555555444221111 111224666776667778888899999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHH
Q 048207 270 KLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLIC 349 (466)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (466)
|.+... . ......++..+++..++.++.||+|||+.++.+...+.++.++++........... ......+..+...+
T Consensus 326 g~~~~~-~-~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 402 (513)
T KOG0254|consen 326 GLKSDT-F-LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN-SSKGAGWLAIVFLC 402 (513)
T ss_pred CCCCch-H-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-cccchhHHHHHHHH
Confidence 888664 3 56777788888999999999999999999999999999999988877654322110 12345677788888
Q ss_pred HHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cceehhhHHHHHHHHH-hhhee
Q 048207 350 VYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK-AGVFFFFGGWLTVMTT-FVHFF 427 (466)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 427 (466)
++...++.++.++++.+.+|.+|.+.|+.+.++.....+..+.+....+....+..+ ...+..+.+.+.+... ..+++
T Consensus 403 ~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~ 482 (513)
T KOG0254|consen 403 LFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFF 482 (513)
T ss_pred HHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEE
Confidence 889999999999999999999999999999999999999999988888888877776 6667777777777777 78899
Q ss_pred cccCCCCCHHHHHHHHccccc
Q 048207 428 LPETKNVPIELMDKVWREHWF 448 (466)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~ 448 (466)
.||+|+++.+|+++.+.+...
T Consensus 483 ~pETkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 483 VPETKGLTLEEINELFEEGIK 503 (513)
T ss_pred cccCCCCcHHHHHHHHHcCCc
Confidence 999999999999987766543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=315.37 Aligned_cols=377 Identities=15% Similarity=0.157 Sum_probs=255.2
Q ss_pred CccccccccCCcch-hHH-----HHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhH------
Q 048207 23 DTKVSDYCKFDSQL-LTS-----LTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYM------ 90 (466)
Q Consensus 23 ~~~i~~~~~~s~~~-~g~-----~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~------ 90 (466)
.|.++++++.+.++ .++ +.++.++++.++++++|+++||+|||+++.+++++++++++++++++|++.
T Consensus 39 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~ 118 (490)
T PRK10642 39 AYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAP 118 (490)
T ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 46677777644422 222 257788999999999999999999999999999999999999999999875
Q ss_pred --HHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhccc-----CCCcchHHHHHhh
Q 048207 91 --LIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKI-----KGGWGWKISLAMA 163 (466)
Q Consensus 91 --l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~-----~~~~~wr~~f~~~ 163 (466)
++++|+++|++.|+.++...++++|++|+++|+++.++...+..+|..+++.+...+... ..++|||+.|++.
T Consensus 119 ~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~ 198 (490)
T PRK10642 119 ILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIA 198 (490)
T ss_pred HHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHH
Confidence 889999999999999999999999999999999999999998888888888765544321 1237899999998
Q ss_pred hHHHHHHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHH
Q 048207 164 AAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMA 243 (466)
Q Consensus 164 ~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (466)
++++++.+++..++||+|+|...+++ .++..+ +...++.+.++++.+++ .++.....
T Consensus 199 ~~~~l~~~~~~~~~~esp~~~~~~~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~-~~~~~~~~ 255 (490)
T PRK10642 199 LPLGIIGLYLRHALEETPAFQQHVDK-LEQGDR---------------------EGLQDGPKVSFKEIATK-HWRSLLTC 255 (490)
T ss_pred HHHHHHHHHHHHcCCCChhHHHHHHh-hhhhcc---------------------ccccccccCCHHHHHHH-hHHHHHHH
Confidence 87777666666779999986432211 000000 00001112345566543 22222222
Q ss_pred HHHHHHHhcccchhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHH
Q 048207 244 ILIPFFQQVTGVNIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMI 322 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 322 (466)
.. ..+.....++....|.|.+++ ..|++..... .......++.+++.++.|+++||+|||+.+..+.+...+....+
T Consensus 256 ~~-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~ 333 (490)
T PRK10642 256 IG-LVIATNVTYYMLLTYMPSYLSHNLHYSEDHGV-LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPA 333 (490)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 22 222233445667778898885 4687776665 66677788889999999999999999998776665433332221
Q ss_pred HHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048207 323 GSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAML 402 (466)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 402 (466)
.... ............++.+.+.+...+.. ..+..|.+|++.|+++.|+.+.++.+++.++|.+.+.+.
T Consensus 334 ~~~~----------~~~~~~~~~~~~~~~g~~~~~~~g~~-~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~ 402 (490)
T PRK10642 334 FILI----------NSNVIGLIFAGLLMLAVILNCFTGVM-ASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLV 402 (490)
T ss_pred HHHH----------hCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 01112222233333333333333333 344568999999999999887778888899999999988
Q ss_pred hhcc-cceehhhHHHHHHHHHhhheecccCCCCC
Q 048207 403 CHFK-AGVFFFFGGWLTVMTTFVHFFLPETKNVP 435 (466)
Q Consensus 403 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (466)
+..+ +.....+..+..+++.+..+++||++++.
T Consensus 403 ~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~ 436 (490)
T PRK10642 403 ESTQNLMMPAYYLMVVAVIGLITGVTMKETANRP 436 (490)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 7654 33222233334444444455668776543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=319.60 Aligned_cols=387 Identities=18% Similarity=0.279 Sum_probs=282.1
Q ss_pred CCccccccccCC---cchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHh
Q 048207 22 EDTKVSDYCKFD---SQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLL 98 (466)
Q Consensus 22 ~~~~i~~~~~~s---~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 98 (466)
..|.+.+|+|++ +.+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~ 190 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 357899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhccc
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLP 178 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 178 (466)
|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ ||+.|++.+++.++..+..+++|
T Consensus 191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~------wr~~~~~~~i~~~~~~~~~~~~~ 264 (505)
T TIGR00898 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD------WRWLQLAVSLPTFLFFLLSWFVP 264 (505)
T ss_pred HhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999877654 99999999988888777778899
Q ss_pred CChhhhhhcCCcHHHHHHHHHHHhCccchH--HHHHHHH-HHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccc
Q 048207 179 ETPNSIIQRTNDHQKAEKMLQRVHGTADVQ--AELEDLI-RASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGV 255 (466)
Q Consensus 179 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (466)
|+|+|+..+++ .+++++.+++..+.+..+ .+..+.. ++..++++.+.+.+++++++..+...+...+..+.....+
T Consensus 265 esp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
T TIGR00898 265 ESPRWLISQGR-IEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343 (505)
T ss_pred CChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887 777777776655433211 1111111 1111111123466777766555444444433333222222
Q ss_pred hhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 048207 256 NIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG 335 (466)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
+. .+.+.+..+.+.. ......++..+++.++.+++.||+|||+.+.++.++.+++.+++....
T Consensus 344 ~~----~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~--------- 406 (505)
T TIGR00898 344 YG----LVLDLGNLGGNIY----LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP--------- 406 (505)
T ss_pred HH----HhccccccCCChH----HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC---------
Confidence 22 2222333344322 344566788889999999999999999999888877777766655431
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHH
Q 048207 336 FSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGG 415 (466)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (466)
....+......++...+.+..+. ..+.+.+|.+|++.|++++|+.+..+.+|+.++|.+.+ +.+......+.++++
T Consensus 407 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~ 482 (505)
T TIGR00898 407 --VDLYFLRTALAVLGKFGITSAFQ-MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGG 482 (505)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHH-HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHH
Confidence 12122333333333333333333 33677789999999999999999999999999999988 433322333344444
Q ss_pred HHHHHHHhhheecccCCCCCHH
Q 048207 416 WLTVMTTFVHFFLPETKNVPIE 437 (466)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~ 437 (466)
+.+++.+..+++||+++++++
T Consensus 483 -~~~~~~~~~~~lpet~~~~l~ 503 (505)
T TIGR00898 483 -LALLAGILTLFLPETKGVPLP 503 (505)
T ss_pred -HHHHHHHHHHcCcCCCCCCCC
Confidence 444444555677898887654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-46 Score=355.97 Aligned_cols=402 Identities=32% Similarity=0.619 Sum_probs=325.6
Q ss_pred CcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc---chhHHHHHHHHhhhhhhhhhhhh
Q 048207 33 DSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF---NIYMLIFGRLLLGVGIDFGNQSV 109 (466)
Q Consensus 33 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~ 109 (466)
++.+.+++.+...+|..+|++++|+++||+|||+.+.++.++..++.++.++++ |++.+.++|+++|++.|...+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456789999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChhhhhhcCC
Q 048207 110 PLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPNSIIQRTN 189 (466)
Q Consensus 110 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~ 189 (466)
..++.|..|+++|++..++.+.+..+|.+++..++..+....++++||..+.+.++++++..+...++||||+|+..++|
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~ 203 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR 203 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc
Confidence 99999999999999999999999999999999887766444334679999999999998888888899999999999988
Q ss_pred cHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhh-hhHHHHHHHHHHHHhcccchhHHhhHHHHHhh
Q 048207 190 DHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKY-RPQLVMAILIPFFQQVTGVNIISFYAPVLFRT 268 (466)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (466)
.+|+++.+++.++.+..+++.++..++.++.++.+..++++++++. +++......+.......+......|.+.++++
T Consensus 204 -~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~ 282 (451)
T PF00083_consen 204 -DEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN 282 (451)
T ss_pred -ccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 7799999988776655555555444444444333456677776543 45556666666666666667778888888888
Q ss_pred hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHH
Q 048207 269 IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLI 348 (466)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (466)
.+.+.. . .......+..+++.+++.+++||+|||+.++.+..++.++.+.+.......... +.......+...
T Consensus 283 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~ 355 (451)
T PF00083_consen 283 AGISNS--F-LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSS----SSWWSILSIVFL 355 (451)
T ss_pred cccccc--c-cccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccceee
Confidence 887777 2 344566677888888889999999999999999888888777665111000000 001133344445
Q ss_pred HHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cceehhhHHHHHHHHHhhhee
Q 048207 349 CVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK-AGVFFFFGGWLTVMTTFVHFF 427 (466)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 427 (466)
.++...++.++.+..+.+.+|.+|++.|+++.|+...++++++.+.+.+...+.+..+ ...+..+++++.+..++.+++
T Consensus 356 ~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~ 435 (451)
T PF00083_consen 356 ALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFF 435 (451)
T ss_pred eeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEE
Confidence 5555667777888888898999999999999999999999999999999988888887 777778888888888889999
Q ss_pred cccCCCCCHHHHHHH
Q 048207 428 LPETKNVPIELMDKV 442 (466)
Q Consensus 428 ~~~~~~~~~~~~~~~ 442 (466)
+||+++++++|++++
T Consensus 436 lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 436 LPETKGKTLEEIQEM 450 (451)
T ss_pred EeeCCCCCHHHHHhh
Confidence 999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=299.85 Aligned_cols=406 Identities=32% Similarity=0.587 Sum_probs=292.7
Q ss_pred CccccccccCC--------cchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc---cchhHH
Q 048207 23 DTKVSDYCKFD--------SQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA---FNIYML 91 (466)
Q Consensus 23 ~~~i~~~~~~s--------~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~l 91 (466)
.|.++++++.+ ..+.+++.+++.++..++++++|+++||+|||+++.++.+++.++.+++.+. .+++.+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (481)
T TIGR00879 51 LALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEML 130 (481)
T ss_pred hhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 34455555555 8999999999999999999999999999999999999999999999998654 345689
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHh---hhhcccCCCcchHHHHHhhhHHHH
Q 048207 92 IFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLN---YGTQKIKGGWGWKISLAMAAAPAS 168 (466)
Q Consensus 92 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~---~~~~~~~~~~~wr~~f~~~~~~~~ 168 (466)
++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++ ....+ ..+||+.|++.++..+
T Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~---~~~w~~~f~~~~~~~~ 207 (481)
T TIGR00879 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN---TLGWRIPLGLQLIPAG 207 (481)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC---CccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 44333 2569999999777777
Q ss_pred HHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHH----HHHH-hhccccCCcchHHhhhhh--hhhHHH
Q 048207 169 ILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELED----LIRA-SSDSKNINHPFKKIIQRK--YRPQLV 241 (466)
Q Consensus 169 ~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~ 241 (466)
+..+..+++||+|++...+++ .+++++..++..+.++.+.+..+ .... ..+.+..+..+++.++.. ..++.+
T Consensus 208 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (481)
T TIGR00879 208 LLFLGLFFLPESPRWLVGKGR-VEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLF 286 (481)
T ss_pred HHHHHHhcCCCChHHHHHcCC-hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHH
Confidence 777777889999988766655 44444444444332221111110 0000 000111111233333211 234555
Q ss_pred HHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHH
Q 048207 242 MAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVM 321 (466)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 321 (466)
+...+..+...........+.|.+.++.|++..... .......++.+++.++.+++.||++||+.+..+..+..++.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 365 (481)
T TIGR00879 287 LGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF-LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFV 365 (481)
T ss_pred HHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 555555555555566677888999899999886666 7888888999999999999999999999988887777776666
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 048207 322 IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAM 401 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (466)
+........... .....+..+....++..+++....+....+..|.+|++.|+++.++.+...++++++++.+.+.+
T Consensus 366 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~ 442 (481)
T TIGR00879 366 LGILGASFVTGS---SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM 442 (481)
T ss_pred HHHHhhcccCCc---ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653221110000 00112333444445555666666677677778999999999999999999999999999999999
Q ss_pred Hhhcccceeh-hhHHHHHHHHHhhheecccCCCCCH
Q 048207 402 LCHFKAGVFF-FFGGWLTVMTTFVHFFLPETKNVPI 436 (466)
Q Consensus 402 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (466)
.++.++...+ ..++++.+.+++.+++.+|+++++.
T Consensus 443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 443 LESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 9987765544 4444445555555566777776554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=275.30 Aligned_cols=356 Identities=15% Similarity=0.157 Sum_probs=275.0
Q ss_pred ccccCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Q 048207 18 RKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLL 97 (466)
Q Consensus 18 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 97 (466)
.+....|+|++|+|+|..+.|++.|.|.++..+++++...+.||+.||++++..+.++.++++++++++||+.++++|++
T Consensus 31 v~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~ 110 (394)
T COG2814 31 VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110 (394)
T ss_pred HHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhc
Q 048207 98 LGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLF 176 (466)
Q Consensus 98 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~ 176 (466)
.|+..|..++...++..+..|+++|++++++...+..++.++|.++|.++.+. +|||..|++.+..+++..+. +..
T Consensus 111 ~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~---~GWR~~F~~ia~l~ll~~~~~~~~ 187 (394)
T COG2814 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL---FGWRATFLAIAVLALLALLLLWKL 187 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999987 55999999999988887655 455
Q ss_pred ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccch
Q 048207 177 LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVN 256 (466)
Q Consensus 177 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (466)
+| |+.. . ++.+.+.++.++...++.....+....+.....+.
T Consensus 188 lP--~~~~--~----------------------------------~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~ 229 (394)
T COG2814 188 LP--PSEI--S----------------------------------GSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFA 229 (394)
T ss_pred CC--CccC--C----------------------------------CCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhh
Confidence 77 2100 0 00011222222222223333333333333333334
Q ss_pred hHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCc
Q 048207 257 IISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGF 336 (466)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
.+++..|.+.+..|++.+... +....++++.++|+.++|++.|| +.|+.+.....+..+.++.+.+..
T Consensus 230 ~ftYi~P~L~~v~g~s~~~vs-~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~---------- 297 (394)
T COG2814 230 LYTYIRPFLESVAGFSVSAVS-LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG---------- 297 (394)
T ss_pred hHHhHHHHHHHccCCCHhHHH-HHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc----------
Confidence 444444555566788888888 89999999999999999999999 888888877777777777766553
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHH
Q 048207 337 SIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGW 416 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (466)
++.+.......++++......... ....++ .-++.++.+.+++....++|...+..+.|.+.++.|+......+++
T Consensus 298 --~~~~~~~~~~~~wg~a~~~~~~~~-~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~ 373 (394)
T COG2814 298 --ASPALALALLFLWGFAFSPALQGL-QTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAA 373 (394)
T ss_pred --chHHHHHHHHHHHHHHhhhhhhHH-HHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 333444444444444443333333 223344 3357889999999999999999999999999999888777777777
Q ss_pred HHHHHHhhheeccc
Q 048207 417 LTVMTTFVHFFLPE 430 (466)
Q Consensus 417 ~~~~~~~~~~~~~~ 430 (466)
..+.+....+...+
T Consensus 374 l~~~a~~~~~~~~~ 387 (394)
T COG2814 374 LLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777666554443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=277.21 Aligned_cols=384 Identities=13% Similarity=0.092 Sum_probs=282.7
Q ss_pred HHhhcccccccccCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccch
Q 048207 9 LKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNI 88 (466)
Q Consensus 9 ~~~f~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~ 88 (466)
...|.-|-|-+.+ .|.|.||.++|.+|+|++.|.+++++.++-++.|.++||.+.|+.+.+++++.++.+++.+++++.
T Consensus 39 a~fYl~RknF~~a-~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~ 117 (448)
T COG2271 39 AAFYLTRKNFNLA-MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSL 117 (448)
T ss_pred HHHHHHHHhHhhc-cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHH
Confidence 3444555555555 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHh--hhhcccCCCcchHHHHHhhhHH
Q 048207 89 YMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLN--YGTQKIKGGWGWKISLAMAAAP 166 (466)
Q Consensus 89 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~--~~~~~~~~~~~wr~~f~~~~~~ 166 (466)
+.+.+.-++.|+.+|..+|.+...++.|+++++||+..++++++.++|..+.+++. +.+... .+||..|++.+++
T Consensus 118 ~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~---~~w~~~f~~pgii 194 (448)
T COG2271 118 FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH---GGWRAAFYFPGII 194 (448)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc---cchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988887 555554 3699999999998
Q ss_pred HHHHHHH-hhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhh-hhhhhhHHHHHH
Q 048207 167 ASILTIG-SLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKII-QRKYRPQLVMAI 244 (466)
Q Consensus 167 ~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 244 (466)
+++..+. ++..+|+|+. +....+++.+++.. +.. .++++++..+.++++ +...+++.++.+
T Consensus 195 aiival~~~~~~rd~Pqs---------~GLP~ie~~~~d~~------e~~--~~~~~~~~ls~~~i~~~YVL~Nk~iW~l 257 (448)
T COG2271 195 AIIVALILLFLLRDRPQS---------EGLPPIEEYRGDPL------EIY--EEEKENEGLTAWQIFVKYVLKNKLIWLL 257 (448)
T ss_pred HHHHHHHHHHHhCCCccc---------cCCCCHHHhhcCch------hhh--hhhccCCCccHHHHHHHHHHcChHHHHH
Confidence 8876554 4557888842 11111111111110 000 111111113344443 556667788888
Q ss_pred HHHHHHhcccchhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhc--CCeeeehhhhHHHHHHHHH
Q 048207 245 LIPFFQQVTGVNIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKL--GRKVLFLLGGIQMLVSQVM 321 (466)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~~~~~~ 321 (466)
.+..+.....-+.+..|.|.|+. ..|++...+. ...+.+-+++++|+++.|+++||+ |||.+..+.+.+.....++
T Consensus 258 a~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~-~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~ 336 (448)
T COG2271 258 ALANVFVYVVRYGINDWGPLYLSEVKGFSLVKAN-WAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLV 336 (448)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHH-HHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 88777777778899999999984 5788888888 899999999999999999999995 5665554433333322222
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHH-HHHHHHHHHHH
Q 048207 322 IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLL-FTSLVAQTFLA 400 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~ 400 (466)
..+.. +..+.++..+++...++.. .+...+.-..+.|..|++..|++.|+...++++ |...+....+.
T Consensus 337 ~~w~~----------~~~~~~l~~~~l~~iGf~I-yGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~ 405 (448)
T COG2271 337 LYWLA----------PNGSYLLDAILLFIIGFLI-YGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGY 405 (448)
T ss_pred HHHcC----------CCccHHHHHHHHHHHHHHH-hhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCccee
Confidence 22221 2222333333333332222 122223345557999999999999999999999 88888888999
Q ss_pred HHhhcccceehhhHHHHHHHHHhhh
Q 048207 401 MLCHFKAGVFFFFGGWLTVMTTFVH 425 (466)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (466)
+.|.+||...+....++.+++.+++
T Consensus 406 i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 406 IADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred eEecCCCcchHHHHHHHHHHHHHHH
Confidence 9898887666655555555444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=291.33 Aligned_cols=382 Identities=14% Similarity=0.154 Sum_probs=263.3
Q ss_pred HHHHhhcccccccccCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc
Q 048207 7 PFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF 86 (466)
Q Consensus 7 ~f~~~f~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~ 86 (466)
.+..+|.|+.+.... .|.+++|+|+|..+.|++.+++.+++++++++.|+++||+|||+++..+.++++++.+++++++
T Consensus 16 ~~~~~~~d~~~~~~~-~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T TIGR02332 16 LFIFSFLDRINIGFA-GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT 94 (412)
T ss_pred HHHHHHhhhhhHHHH-HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677788777766 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhccc---CCCcchHHHHHhh
Q 048207 87 NIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKI---KGGWGWKISLAMA 163 (466)
Q Consensus 87 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~~~~wr~~f~~~ 163 (466)
|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|.++++.+++.+.+. .+..|||+.|++.
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~ 174 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLE 174 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998877542 1235799999998
Q ss_pred hHHHHHHH-HHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHH
Q 048207 164 AAPASILT-IGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVM 242 (466)
Q Consensus 164 ~~~~~~~~-~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (466)
++++++.. +..+++||+|+.. +.-++++.+...+..+.+... .++. .+..++.+...+..+++... +.++
T Consensus 175 ~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~ 245 (412)
T TIGR02332 175 GFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLT---LEQP---EGAFAHAAMPQRSMLREIFT-PAIM 245 (412)
T ss_pred HHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccc---cccc---ccccccccccHHHHHHHhcC-hHHH
Confidence 88876654 4556689988421 000011111111111100000 0000 00000001111111222112 2334
Q ss_pred HHHHHHHHhcccchhHHhhHHHHHhhh--CCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeee-hhhhHHHHHHH
Q 048207 243 AILIPFFQQVTGVNIISFYAPVLFRTI--KLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLF-LLGGIQMLVSQ 319 (466)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~ 319 (466)
...+.+++....++.+..|.|.++++. +.+..+.+ .......++.+++.++.++++||+++|+.. ........+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~-~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~ 324 (412)
T TIGR02332 246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIG-LLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW 324 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhH-HHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH
Confidence 444444555556777888999999875 45655666 778888999999999999999999987653 32222222222
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 048207 320 VMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFL 399 (466)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 399 (466)
++.... . . ........++...+.... .+..+....|.+|++.|+++.|+.+..++++++++|.+.+
T Consensus 325 -~~~~~~----------~-~-~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g 390 (412)
T TIGR02332 325 -LLASAT----------D-H-NLIQLLGIIMASMGSFSA-MAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIG 390 (412)
T ss_pred -HHHHhc----------C-C-HHHHHHHHHHHHHHhhhh-hhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 111110 1 1 111111122222222111 2223445467899999999999999999999999999999
Q ss_pred HHHhhcc-cceehhh
Q 048207 400 AMLCHFK-AGVFFFF 413 (466)
Q Consensus 400 ~~~~~~~-~~~~~~~ 413 (466)
.+.+..+ +...+.+
T Consensus 391 ~i~~~~g~~~~~~~~ 405 (412)
T TIGR02332 391 ILKDATGSFNSGLWF 405 (412)
T ss_pred cccccCCCCchhHHH
Confidence 9999876 4444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=291.91 Aligned_cols=390 Identities=10% Similarity=-0.034 Sum_probs=261.2
Q ss_pred HHHHhhcccccccccCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhh--
Q 048207 7 PFLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS-- 84 (466)
Q Consensus 7 ~f~~~f~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-- 84 (466)
.+...|.++.+.... .|.+++|+|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++.++
T Consensus 37 ~~~~~y~~r~~~~~~-~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~ 115 (467)
T PRK09556 37 GYLTMYLIRKNFKAA-QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASL 115 (467)
T ss_pred HHHHHHHHhcChhhh-hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHH
Confidence 345567677766655 68899999999999999999999999999999999999999999998888887777666554
Q ss_pred ---ccchhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHH
Q 048207 85 ---AFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLA 161 (466)
Q Consensus 85 ---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~ 161 (466)
++|++.+++.|+++|++.+...+...++++||+|+++|+++++++..+.++|.++++.++..+.......+||..|.
T Consensus 116 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~ 195 (467)
T PRK09556 116 GSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFI 195 (467)
T ss_pred hcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHH
Confidence 68999999999999999999999999999999999999999999999999999999988765544321125999998
Q ss_pred hhhHHHHHHHHH-hhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhh-hhhhhhH
Q 048207 162 MAAAPASILTIG-SLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKII-QRKYRPQ 239 (466)
Q Consensus 162 ~~~~~~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 239 (466)
+.++++++..+. +++.+|+|+....+ + .++ . .....+. + + +..++.+.+.++.+ +...+++
T Consensus 196 ~~g~~~~~~~i~~~~~~~~~p~~~~~~-~-~~~---~---~~~~~~~--~-----~--~~~~~~~~~~~~~~~~~~l~~~ 258 (467)
T PRK09556 196 FPSIIALIIGFIGLRYGSDSPEELGWG-K-AEE---I---FGEPISE--E-----D--KETESTDMTKWQIFVEYVLKNP 258 (467)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCC-C-hhh---c---ccCccch--h-----h--hccccccCcHHHHHHHHHHcCh
Confidence 888777665443 44456666421000 0 111 0 0000000 0 0 00000011111211 1122233
Q ss_pred HHHHHHHHHHHhcccchhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHH
Q 048207 240 LVMAILIPFFQQVTGVNIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVS 318 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 318 (466)
.++...+..++....+.....|.|.|++ +.|++..+++ .......++.+++.++.|+++||++||+.+........++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~-~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAI-NTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3444444444444445667888998885 5788888877 7778888899999999999999999998765544333332
Q ss_pred HHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHH-HHHHHHHH
Q 048207 319 QVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLL-FTSLVAQT 397 (466)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~ 397 (466)
...+... ...+.+...+..++.+.... +..........|.+|++.+|++.|+.+..+++ ++.++|.+
T Consensus 338 ~~~~~~~-----------~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~ 405 (467)
T PRK09556 338 FTLGVYQ-----------HATSEYMYLASLFALGFLVF-GPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVG 405 (467)
T ss_pred HHHHHHH-----------hcCcHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhh
Confidence 2221111 11122222233333332211 11111123446999999999999999999997 66999999
Q ss_pred HHHHHh------------hcccceehhhHHHHHHHHHhhhee
Q 048207 398 FLAMLC------------HFKAGVFFFFGGWLTVMTTFVHFF 427 (466)
Q Consensus 398 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 427 (466)
.|.+.| ..++...+.+..++.+++.+..+.
T Consensus 406 ~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 406 LGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999 345555554444455554444443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=281.68 Aligned_cols=368 Identities=18% Similarity=0.189 Sum_probs=240.1
Q ss_pred hhcccccccccCCcccccccc---CCcchhHHHH---HhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhh
Q 048207 11 KFFPEVNRKMREDTKVSDYCK---FDSQLLTSLT---SSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS 84 (466)
Q Consensus 11 ~f~~~~~~~~~~~~~i~~~~~---~s~~~~g~~~---s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~ 84 (466)
+++|....+.. .|.+.++++ .+..+.+... +..+++..++++++|+++||+|||+++..+..+++++++++++
T Consensus 34 ~~~d~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~ 112 (432)
T PRK10406 34 EWFDFYVYSFC-SLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIAC 112 (432)
T ss_pred HHHHHHHHHHH-HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhh
Confidence 44455444433 567788874 5555544444 4445555599999999999999999999999999999999999
Q ss_pred ccchh--------HHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC-----
Q 048207 85 AFNIY--------MLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK----- 151 (466)
Q Consensus 85 ~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----- 151 (466)
++++. .+++.|+++|++.|..++...++++|++|+++|+++.++.+.+...|.++++.+...+....
T Consensus 113 ~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 192 (432)
T PRK10406 113 LPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAEL 192 (432)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99875 58899999999999999999999999999999999999999988889888887765544321
Q ss_pred CCcchHHHHHhhhHHHHHHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHh
Q 048207 152 GGWGWKISLAMAAAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKI 231 (466)
Q Consensus 152 ~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (466)
..+|||++|++.++++++.......+||+|++. + ++ ++++.+++++
T Consensus 193 ~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~--------~-~~-------------------------~~~~~~~~~l 238 (432)
T PRK10406 193 REWGWRIPFALGAVLAVVALWLRRQLDETSQQE--------T-RA-------------------------LKEAGSLKGL 238 (432)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhcCCCCchHH--------H-hh-------------------------hcccccHHHH
Confidence 136899999998888877766666678876421 0 00 0001234555
Q ss_pred hhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehh
Q 048207 232 IQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLL 310 (466)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 310 (466)
++++ +.+.......+.....++....|.|.+++ +.|++..+.. .......++..++.++.|+++||++||+.+..
T Consensus 239 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~-~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~ 314 (432)
T PRK10406 239 WRNR---RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVAS-GIMTAALFVFMLIQPLIGALSDKIGRRTSMLC 314 (432)
T ss_pred HhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 5432 22222222222222345567778888875 4688776666 66667677778888899999999999987765
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHH
Q 048207 311 GGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLF 390 (466)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 390 (466)
...+..+....+..... .............+.....+.. .+....+.+|.+|++.|+++.|+.+.+++..
T Consensus 315 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~ 384 (432)
T PRK10406 315 FGSLAALFTVPILSALQ---------NVSSPYAAFGLVMCALLIVSFY-TSISGILKAEMFPAQVRALGVGLSYAVANAL 384 (432)
T ss_pred HHHHHHHHHHHHHHHHH---------cCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCccchhhhHHHHHHHHH
Confidence 54443333222211110 0011121111111111111111 1233566689999999999999999887763
Q ss_pred -HHHHHHHHHHHHhhcc-cceehhhHHHHHHHHHhhheec
Q 048207 391 -TSLVAQTFLAMLCHFK-AGVFFFFGGWLTVMTTFVHFFL 428 (466)
Q Consensus 391 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 428 (466)
+...|.+.+ +.+..+ +...+.+.+...+++.+..+++
T Consensus 385 ~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 385 FGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 444555555 555555 3334444444444444444433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=283.33 Aligned_cols=348 Identities=16% Similarity=0.167 Sum_probs=249.9
Q ss_pred CCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 22 EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 22 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
..|.+++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++++++++++.++++|+++|++
T Consensus 40 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g 119 (426)
T PRK12307 40 IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMG 119 (426)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCCh
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETP 181 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 181 (466)
.+...+....++.|++|+++|+++.++...+..+|.++++.+...+.+. .+||+.|++..+..++........||++
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~---~~w~~~f~i~~~~~~~~~~~~~~~p~~~ 196 (426)
T PRK12307 120 MAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA---YGWRAAFFVGLLPVLLVIYIRARAPESK 196 (426)
T ss_pred HhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc---CCHHHHHHHHHHHHHHHHHHHHHCCCCh
Confidence 9999999999999999999999999999999999999999888777654 4699999886654444333333356655
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
++..++.+ ..++.. ....+..+.++++.++++..+........ .+...........+
T Consensus 197 ~~~~~~~~-------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 253 (426)
T PRK12307 197 EWEEAKLS-------------GKGKHS---------QSAWSVFSLSMKGLFNRAQFPLTLCVFIV-LFSIFGANWPIFGL 253 (426)
T ss_pred HHHHhhhh-------------cccccc---------ccchhhhhHHHHHHHhhchHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 32111000 000000 00000001234455544433322222222 22222233345667
Q ss_pred HHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 048207 262 APVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYA 341 (466)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (466)
.|.++++.|++....+ .......++.++++++.+++.||++||+.+..+.++..+..+.+... +.. .
T Consensus 254 ~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~ 320 (426)
T PRK12307 254 LPTYLAGEGFDTGVVS-NLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-----------PQD-N 320 (426)
T ss_pred HHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----------ccc-c
Confidence 8888888888877777 77788889999999999999999999998877766655544333222 111 1
Q ss_pred HHHHHHHHHHHHhh-hccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccce
Q 048207 342 YLILVLICVYKAGF-GFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGV 409 (466)
Q Consensus 342 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
.. ....++++.++ ..+..+....++.|.+|++.|++++|+.+....+++.++|.+.+.+.+..+...
T Consensus 321 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 321 YL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred HH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 11 11222222221 112223334556799999999999999999999999999999999999887543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=251.74 Aligned_cols=391 Identities=17% Similarity=0.178 Sum_probs=296.4
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+.++.+..|..++......|..+++..+|..+|++|||+.+.+..+...+...+.+.++|+..+++.|.+.|+|.
T Consensus 101 ~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~ 180 (528)
T KOG0253|consen 101 LPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGV 180 (528)
T ss_pred HHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccC
Confidence 46677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPN 182 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~ 182 (466)
|+ .|...++-.|..|..+|...+-.. ..+.+|.+....++...... .||||.....+++..+.+...+++|||||
T Consensus 181 gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~---~gwr~~l~~~~~pl~~~a~f~~w~~ESpR 255 (528)
T KOG0253|consen 181 GG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN---FGWRYLLFTSSTPLMFAARFLVWVYESPR 255 (528)
T ss_pred CC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHHHhhcccCcc
Confidence 98 899999999999999999887777 99999999999998877664 46999988888888888888899999999
Q ss_pred hhhhcCCcHHHHHHHHHHHhCccchH---------------HHHHHHHHHh-hccccCCcchHHhhhhhhhhHHHHHHHH
Q 048207 183 SIIQRTNDHQKAEKMLQRVHGTADVQ---------------AELEDLIRAS-SDSKNINHPFKKIIQRKYRPQLVMAILI 246 (466)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (466)
++..+++ ++++.+.+++++..|..+ +|..+..+.+ +..++......+++....++..+....+
T Consensus 256 f~~~~G~-~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~i 334 (528)
T KOG0253|consen 256 FYLAKGD-DYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRI 334 (528)
T ss_pred hhhhcCC-hHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHH
Confidence 9999999 888888888876554211 1111111111 1122334566777766666666665555
Q ss_pred HHHHhcccchhHHhhHHHHHhhh--------------------CCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCee
Q 048207 247 PFFQQVTGVNIISFYAPVLFRTI--------------------KLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKV 306 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 306 (466)
++...+. ++........+++.. ..+..... .-.....+..++|.++.++++||+|||+
T Consensus 335 wfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dY-rdllitslaefPGlLIt~~iverlGRKk 412 (528)
T KOG0253|consen 335 WFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDY-RDLLITSLAEFPGLLITGVIVERLGRKK 412 (528)
T ss_pred HHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHH-HHHHHHHHhhCCchhHHHHHHHHhcchh
Confidence 5544433 333333222222211 11222222 4556778889999999999999999999
Q ss_pred eehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHH
Q 048207 307 LFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAV 386 (466)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 386 (466)
.+..+.+++.++.+++.... .........+...++....+... |.|..|++|+..|+++.|.+...
T Consensus 413 TMal~l~~f~iflfll~~c~-------------~rn~~tvllf~arafisg~fqva-YvYtPEVyPTavRatgvGtcSsm 478 (528)
T KOG0253|consen 413 TMALSLILFGIFLFLLTTCK-------------TRNAYTVLLFTARAFISGAFQVA-YVYTPEVYPTAVRATGVGTCSSM 478 (528)
T ss_pred HHHHHHHHHHHHHHHHHHhc-------------CcchhHHHHHHHHHHHhchheEE-EEecCcccchhhhhcchhhhhhH
Confidence 99999998888887776542 23334445555555556666655 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccceehhhHHHHHHHHHhhheecccCCCCCH
Q 048207 387 GLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMTTFVHFFLPETKNVPI 436 (466)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (466)
+++|+.+.|.+. ...+..-..+.+++.+++++.++...++-.|+|+|..
T Consensus 479 aRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 479 ARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred HhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 999999999887 3333333455556666666666655566568888753
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=274.42 Aligned_cols=341 Identities=12% Similarity=0.042 Sum_probs=231.6
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+....++|++.+++.|+++|++.
T Consensus 14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~ 93 (368)
T TIGR00903 14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQ 93 (368)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHh
Confidence 57889999999999999999999999999999999999999999877666555555443344479999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHH-HHHhhcccCCh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASIL-TIGSLFLPETP 181 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~es~ 181 (466)
+. .+.....++|++|+++|++++++.+.+..+|.++++.++..+.+. +|||+.|++.++++++. ++..+++||+|
T Consensus 94 ~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~---~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 94 PF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA---GGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 86 556666779999999999999999999999999999999988764 56999999977776664 44556689988
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
++.. ++ .+. ++. .++++++++++ .++...+..++....++.+..|
T Consensus 170 ~~~~--~~-~~~------------------~~~----------~~~~~~ll~~~----~~~~~~~~~~~~~~~~~~~~~w 214 (368)
T TIGR00903 170 FQAA--EG-FGF------------------KDA----------VKEFGALAGRK----DLWIIGAILGFGVALFDNLAIW 214 (368)
T ss_pred CCCC--CC-cch------------------HHH----------HHHHHHHHcCh----hHHHHHHHHHHHHHHHHHHHHH
Confidence 6421 00 000 000 01234455443 3344444455555567788899
Q ss_pred HHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCe---eeehh-hhHHHHHHHHHHHHHHHhhcCCCCCcc
Q 048207 262 APVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRK---VLFLL-GGIQMLVSQVMIGSIMAAQLGDHGGFS 337 (466)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
.|.++++.+++.. .+ .......+.+.++ .++++||..|| +.... ......+....+...
T Consensus 215 lp~~L~~~g~s~~-~~-~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~------------ 277 (368)
T TIGR00903 215 LEAALRPAGLEDI-AG-DAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE------------ 277 (368)
T ss_pred HHHHHHHCCCChH-HH-HHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc------------
Confidence 9999988887754 44 4444544544444 47788887654 22221 222222222222111
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cceehhhHHH
Q 048207 338 IGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK-AGVFFFFGGW 416 (466)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 416 (466)
..........++.+.+..... +..+.+.+|.+|++.|+++.|+.+..+++++..+|++.+.+.. + ...+..++..
T Consensus 278 -~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~ 353 (368)
T TIGR00903 278 -LNRLALFAFIGIAGLLMLPAY-AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAIL 353 (368)
T ss_pred -cccHHHHHHHHHHHHhhhhhH-HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 112222223333333322222 3346777899999999999999999999999999999988874 3 2334444444
Q ss_pred HHHHHHh
Q 048207 417 LTVMTTF 423 (466)
Q Consensus 417 ~~~~~~~ 423 (466)
..+.++.
T Consensus 354 ~~i~~~~ 360 (368)
T TIGR00903 354 ITIAFAI 360 (368)
T ss_pred HHHHHHH
Confidence 4443333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=278.32 Aligned_cols=361 Identities=14% Similarity=0.171 Sum_probs=242.3
Q ss_pred ccccc--cCCcchhHHHH-----HhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchh--------H
Q 048207 26 VSDYC--KFDSQLLTSLT-----SSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIY--------M 90 (466)
Q Consensus 26 i~~~~--~~s~~~~g~~~-----s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~ 90 (466)
+.+++ ++++. .+++. ++.+++..+++++.|+++||+|||+++.++.++++++++++++++|++ .
T Consensus 49 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (438)
T PRK09952 49 FNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVL 127 (438)
T ss_pred HHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 34444 56665 45554 355677889999999999999999999999999999999999999987 5
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC-----CCcchHHHHHhhhH
Q 048207 91 LIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK-----GGWGWKISLAMAAA 165 (466)
Q Consensus 91 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----~~~~wr~~f~~~~~ 165 (466)
++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|.+++..+...+.... ..++||++|++.++
T Consensus 128 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~ 207 (438)
T PRK09952 128 LVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIV 207 (438)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999887766554321 13689999999888
Q ss_pred HHHHHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHH-hhhhhhhhHHHHHH
Q 048207 166 PASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKK-IIQRKYRPQLVMAI 244 (466)
Q Consensus 166 ~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 244 (466)
+.++........||+|+|...+++ .++ .+.+.+..+ .++++ +.+...
T Consensus 208 ~~l~~~~l~~~~~es~~~~~~~~~-~~~----------------------------~~~~~~~~~~l~~~~---~~~~~~ 255 (438)
T PRK09952 208 LVLIALWVRNGMEESAEFEQQQHE-QAA----------------------------AKKRIPVIEALLRHP---GAFLKI 255 (438)
T ss_pred HHHHHHHHHHhCCCChhHHHHHhh-ccc----------------------------ccccCCHHHHHHHch---HHHHHH
Confidence 776665555668888865322111 000 000111112 22221 122222
Q ss_pred HHHHHHhcccchhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHH
Q 048207 245 LIPFFQQVTGVNIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIG 323 (466)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 323 (466)
....+.....++....|.|.+++ ..|.+..... ......++..+++.++.|+++||++||+.+..+.++..++.+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~-~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~ 334 (438)
T PRK09952 256 IALRLCELLTMYIVTAFALNYSTQNLGLPRELFL-NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFF 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 22222223334556677787764 4677665444 445556777788899999999999999987776655444333322
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHH-HHHHHHHHHHHHHH
Q 048207 324 SIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGL-LFTSLVAQTFLAML 402 (466)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~~~~~~~~~~~~~~ 402 (466)
.... ..+..+..+...++.+.+.+...... +.+..|.+|++.|+++.|+.+..+. +++.++|.+.+.+.
T Consensus 335 ~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~ 404 (438)
T PRK09952 335 MALE---------AQSIFWIVFFSIMLANIAHDMVVCVQ-QPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALV 404 (438)
T ss_pred HHHH---------cCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2110 11112222223333333433333333 5666899999999999999777655 78899999999998
Q ss_pred hhcc--cceehhhHHHHHHHHHhhheeccc
Q 048207 403 CHFK--AGVFFFFGGWLTVMTTFVHFFLPE 430 (466)
Q Consensus 403 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 430 (466)
+..+ +...+.+.+++.+++.+..+..++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 434 (438)
T PRK09952 405 TYFGGSWHSVAIYLLAGCLISAMTALLMKD 434 (438)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHccc
Confidence 8543 444455555555665555555554
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=280.65 Aligned_cols=368 Identities=13% Similarity=0.051 Sum_probs=252.9
Q ss_pred CCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 22 EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 22 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
..|.+.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|++
T Consensus 45 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~ 124 (434)
T PRK11663 45 AMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFF 124 (434)
T ss_pred hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 36888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHH-HHHhhcccCC
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASIL-TIGSLFLPET 180 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~es 180 (466)
.|...+...+++.|++|+++|++++++.+.+.++|..+++.+++.+.+. ++||+.|++.+++.++. .+..+++||+
T Consensus 125 ~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~---~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 125 QGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH---YGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999998887764 56999999988776654 3444567887
Q ss_pred hhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhh-hhhhHHHHHHHHHHHHhcccchhHH
Q 048207 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQR-KYRPQLVMAILIPFFQQVTGVNIIS 259 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
|++...+.. .+..++ . ++ ..+++++.+.+.++.++. ..+++.++...+..+.....+..+.
T Consensus 202 p~~~~~~~~-~~~~~~----------~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (434)
T PRK11663 202 PQAMGLPSV-GEWRHD----------A----LE---LAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAIN 263 (434)
T ss_pred HhhcCCCCc-cccccc----------c----cc---cchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 753211100 000000 0 00 000000011122232221 1222333333333333333455667
Q ss_pred hhHHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcC--Ceeeehh-hhHHHHHHHHHHHHHHHhhcCCCCC
Q 048207 260 FYAPVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLG--RKVLFLL-GGIQMLVSQVMIGSIMAAQLGDHGG 335 (466)
Q Consensus 260 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
.|.|.++ ++.|++..+.+ .......++.++++++.|++.||+. +|+.... ......+....+...
T Consensus 264 ~~~p~~l~~~~g~s~~~a~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~---------- 332 (434)
T PRK11663 264 DWGNLYMSETLGVDLVTAN-SAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM---------- 332 (434)
T ss_pred HHHHHHHHhccCCCHHHHH-HHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc----------
Confidence 7888888 45788888877 7888889999999999999999983 3333222 111112121111111
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHH
Q 048207 336 FSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGG 415 (466)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (466)
+..............+.+ .............|.+|++.|+++.|+.+++.++|+.++|++.+.+.+..++...+...+
T Consensus 333 -~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~ 410 (434)
T PRK11663 333 -PFASYVMQAACFFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVIS 410 (434)
T ss_pred -ccccHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHH
Confidence 111111111111112111 111111223445799999999999999999999999999999999999888666655555
Q ss_pred HHHHHHHh
Q 048207 416 WLTVMTTF 423 (466)
Q Consensus 416 ~~~~~~~~ 423 (466)
.+.+++.+
T Consensus 411 ~~~~~~~~ 418 (434)
T PRK11663 411 IAAGISAL 418 (434)
T ss_pred HHHHHHHH
Confidence 55444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=271.89 Aligned_cols=345 Identities=14% Similarity=0.103 Sum_probs=250.9
Q ss_pred CCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 22 EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 22 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
..|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+..++++++++++|++.++++|+++|++
T Consensus 31 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~ 110 (390)
T PRK03545 31 LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFA 110 (390)
T ss_pred chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhcccCC
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLFLPET 180 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es 180 (466)
.+...+...+++.|++|+++|++++++...+.++|..++|++++.+.+. .+||+.|++.++++++..+. ..++||.
T Consensus 111 ~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 111 HAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY---LGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999887764 46999999988877665443 3446664
Q ss_pred hhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHh
Q 048207 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISF 260 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
|+ +++ ++ ..+.++.+|++..+...... .... ........
T Consensus 188 ~~----~~~--~~-------------------------------~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 226 (390)
T PRK03545 188 PS----EHS--GS-------------------------------LKSLPLLFRRPALVSLYLLT---VVVV-TAHFTAYS 226 (390)
T ss_pred CC----CCc--ch-------------------------------HHHHHHHHhCcHHHHHHHHH---HHHH-HHHHHHHH
Confidence 42 000 00 00122333333222222111 1111 12223334
Q ss_pred hHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccch
Q 048207 261 YAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 261 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
+.+.+.+ +.|.+....+ .......++.++++++.+++.||++||+. ..+..+..++...+.... +
T Consensus 227 ~~~~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~~------------~ 292 (390)
T PRK03545 227 YIEPFVQQVAGLSENFAT-LLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPAA------------N 292 (390)
T ss_pred HHHHHHHHhcCCCccHHH-HHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHHh------------c
Confidence 5555554 4688887777 77788889999999999999999998754 333333333333222211 2
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHH
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTV 419 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (466)
+.+.......+.+.+.... .+.......+..| +.|++++|+.+...++|..++|.+.|.+.++.+....+...+.+.+
T Consensus 293 ~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~ 370 (390)
T PRK03545 293 SEWHLSVLSIFWGIAIMCI-GLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALAL 370 (390)
T ss_pred hHHHHHHHHHHHHHHHhcc-hHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Confidence 2333344444444443322 2222344457666 6889999999999999999999999999999997766666665555
Q ss_pred HHHhhhe
Q 048207 420 MTTFVHF 426 (466)
Q Consensus 420 ~~~~~~~ 426 (466)
.+.+...
T Consensus 371 ~~~~~~~ 377 (390)
T PRK03545 371 AALVWSI 377 (390)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=277.93 Aligned_cols=354 Identities=15% Similarity=0.118 Sum_probs=258.0
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+++|+|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.++++++++++.+++.|++.|++.
T Consensus 38 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 117 (406)
T PRK11551 38 APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGL 117 (406)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHH-HHhhcccCCh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILT-IGSLFLPETP 181 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~es~ 181 (466)
+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+. .+||+.|++.++..++.. +...++||+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 118 GGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD---AAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999999999999999999998776654 469999998876655544 4455678887
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
++..++++ .++.+ ...+..+++...++.. ......+......+....|
T Consensus 195 ~~~~~~~~-~~~~~------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 242 (406)
T PRK11551 195 AFAQAAGA-GKQRA------------------------------PVLRALFGEGRATATL-LLWISYFFTLIVLYFLLNW 242 (406)
T ss_pred hHHhccCc-chhhh------------------------------hhHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 54222111 00000 0001111111111111 1111122222234556677
Q ss_pred HHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 048207 262 APVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYA 341 (466)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (466)
.|.++++.|.+....+ .......++.+++.++.|++.||++||+.+..+.....++.+.+... +..
T Consensus 243 ~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 308 (406)
T PRK11551 243 LPSLLVGQGLSRSQAG-LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-------------PSF 308 (406)
T ss_pred HHHHHHhCCCChhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-------------CcH
Confidence 8999888898888877 78888889999999999999999999988877555555544433322 112
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cceehhhHHHHHHH
Q 048207 342 YLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK-AGVFFFFGGWLTVM 420 (466)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 420 (466)
+...+...+.+.+.... .+....+..|.+|++.|+++.|+.+....++..++|.+.|.+.++.+ +...+...+.+.+.
T Consensus 309 ~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK11551 309 AGMLLAGFAAGLFVVGG-QSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILV 387 (406)
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHH
Confidence 22333333333333322 33335666899999999999999999999999999999999998765 33334344444444
Q ss_pred HHhhhe
Q 048207 421 TTFVHF 426 (466)
Q Consensus 421 ~~~~~~ 426 (466)
+.+..+
T Consensus 388 ~~~~~~ 393 (406)
T PRK11551 388 AALAAL 393 (406)
T ss_pred HHHHHH
Confidence 444433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=272.33 Aligned_cols=355 Identities=14% Similarity=0.050 Sum_probs=255.7
Q ss_pred cCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhh
Q 048207 21 REDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGV 100 (466)
Q Consensus 21 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 100 (466)
.-.|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+++|+
T Consensus 30 ~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gi 109 (393)
T PRK09705 30 PLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGV 109 (393)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc-cC
Q 048207 101 GIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL-PE 179 (466)
Q Consensus 101 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e 179 (466)
+.+...+....++.|++| ++|+++++++..+...|..+++.+++.+.+.. .+||..+.+.++..++.....+.. ++
T Consensus 110 g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~ 186 (393)
T PRK09705 110 GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVALFAWWWQSAR 186 (393)
T ss_pred HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999997 78999999999999999999999888776542 259998877665554443333222 11
Q ss_pred ChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHH
Q 048207 180 TPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIIS 259 (466)
Q Consensus 180 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
.|+ .++ ++ +...++.++++ +. +...+........+....
T Consensus 187 ~~~--------~~~--------------------------~~---~~~~~~~l~~~---~~-~~l~~~~~~~~~~~~~~~ 225 (393)
T PRK09705 187 EVA--------SSH--------------------------KT---TTTPVRVVFTP---RA-WTLGVYFGLINGGYASLI 225 (393)
T ss_pred CCc--------ccc--------------------------CC---CcCCcccccCH---hH-HHHHHHHHHHHHHHHHHH
Confidence 110 000 00 00111122221 12 222222223333456777
Q ss_pred hhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccch
Q 048207 260 FYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
.|.|.++++.|.+..+.+ ......+++.++++++.+++.||++||+....+..+..++..++... +..
T Consensus 226 ~~lp~~l~~~g~s~~~ag-~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~ 293 (393)
T PRK09705 226 AWLPAFYIEIGASAQYSG-SLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL-----------PLQ 293 (393)
T ss_pred HHHHHHHHHcCCChhhhh-HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc-----------cch
Confidence 888989888888888777 88889999999999999999999999988887766666655544322 111
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccc-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cceehhhHHHH
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIF-PLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK-AGVFFFFGGWL 417 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 417 (466)
.. .. ...+.+.+.+...+.. .....+.. |++.+++.+|+.+..+++++.++|.+.|++.|..| +...+....++
T Consensus 294 ~~-~~--~~~l~g~g~g~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~ 369 (393)
T PRK09705 294 LP-VL--WAMVCGLGLGGAFPLC-LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALC 369 (393)
T ss_pred HH-HH--HHHHHHHhccchHHHH-HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 11 11 1223334444333333 33334555 46789999999999999999999999999999887 44444443333
Q ss_pred HHH-HHhhheecccCCCCC
Q 048207 418 TVM-TTFVHFFLPETKNVP 435 (466)
Q Consensus 418 ~~~-~~~~~~~~~~~~~~~ 435 (466)
.+. ..+...+.||+++|.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 370 VVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHhccccccch
Confidence 333 334455667766554
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=273.02 Aligned_cols=359 Identities=16% Similarity=0.137 Sum_probs=251.6
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+++++|+|..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.
T Consensus 35 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 114 (405)
T TIGR00891 35 LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGM 114 (405)
T ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPN 182 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~ 182 (466)
+...+...+++.|++|+++|+++.++.+.+..+|.++++.+++.+.+..+ .+||+.|++.+++.++..+....+||+++
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 193 (405)
T TIGR00891 115 GGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAED 193 (405)
T ss_pred hhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 99999999999999999999999999999999999999999888766433 35999999887777766666667888875
Q ss_pred hhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhH
Q 048207 183 SIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYA 262 (466)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (466)
+...+++ .++.++..++..+.++. .+. ..++.....++. ...++......................+.
T Consensus 194 ~~~~~~~-~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (405)
T TIGR00891 194 WKEKHAG-KALVRTMVDILYGGEHR---IAN------IVMTLAAAMVQS--AGKRWPTFVYLVVLVLFANLYSHPIQDLL 261 (405)
T ss_pred HHHHhhh-hhhhhhHHHHHhccchh---hhh------hhhhhhHHhhhh--hhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4322211 11111111111100000 000 000000011111 11111111111111111111223444556
Q ss_pred HHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 048207 263 PVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYA 341 (466)
Q Consensus 263 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (466)
|.++ ++.|++..+.+ .......++.+++.++.+++.||++||+.+..+.....+........ . ...
T Consensus 262 ~~~~~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~ 328 (405)
T TIGR00891 262 PTYLKADLGLSPHTVA-NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI-----------G-ANV 328 (405)
T ss_pred HHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh-----------C-Cch
Confidence 7666 45788888777 77888899999999999999999999998877665543322222111 1 112
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cc
Q 048207 342 YLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK-AG 408 (466)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 408 (466)
+...+..++.+........ ....+..|.+|++.|++++|+.+.+..+++.++|++.|.+.++.| +.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~ 395 (405)
T TIGR00891 329 AVLGLGLFFQQMLVQGIWG-ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYG 395 (405)
T ss_pred HHHHHHHHHHHHHHccchh-hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 2222222333333332333 334566899999999999999999999999999999999999888 44
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=263.44 Aligned_cols=402 Identities=21% Similarity=0.251 Sum_probs=289.8
Q ss_pred cCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccc-------hhHHHHHHHHhhhhhh
Q 048207 31 KFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFN-------IYMLIFGRLLLGVGID 103 (466)
Q Consensus 31 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~-------~~~l~~~r~l~G~~~g 103 (466)
+.++...+.+..+..+|..+|++++|+++||+|||+++...++++.+++++++++.. .+++.+.|++.|+|.|
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG 159 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG 159 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence 356777899999999999999999999999999999999999999999998887632 4789999999999999
Q ss_pred hhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcc----cCCC--------cchHHHHHhhhHHHHHHH
Q 048207 104 FGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQK----IKGG--------WGWKISLAMAAAPASILT 171 (466)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~----~~~~--------~~wr~~f~~~~~~~~~~~ 171 (466)
+-+|...+..+|...++.||...+.+.+..+.|.+.|.+++..+.. ..+. .-||..+.+++++++..+
T Consensus 160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l 239 (538)
T KOG0252|consen 160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL 239 (538)
T ss_pred CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877777777777666554432 2211 249999999999999999
Q ss_pred HHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcc---hHHhhhhhhhhHHHHHHHHHH
Q 048207 172 IGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHP---FKKIIQRKYRPQLVMAILIPF 248 (466)
Q Consensus 172 ~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 248 (466)
...+.+|||++|.....++.+.+.+..++... .+ .++........+..+.. +...+..+ .-+.++.....+
T Consensus 240 y~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~---~~--~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~W 313 (538)
T KOG0252|consen 240 YFRLKMPETARYTALVSKKLKQAAGDMKKVLS---VD--IEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTW 313 (538)
T ss_pred HhhhcCCcchhHHHHhhcCHhhhhhccccccc---cc--cchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHH
Confidence 99999999999875444434443321111111 11 11111111111111112 22222222 224455555666
Q ss_pred HHhcccchhHHhhHHHHHhhhCCCcchhhH--------HHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHH
Q 048207 249 FQQVTGVNIISFYAPVLFRTIKLSENTSLL--------MSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQV 320 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 320 (466)
+..-..++....+...+++..++.+..... ....+...+.++|.++...++|++|||++.+.++.++.+..+
T Consensus 314 FllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~ 393 (538)
T KOG0252|consen 314 FLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFF 393 (538)
T ss_pred HhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHH
Confidence 666666788888888888888876655441 122333334455777888899999999999999999888887
Q ss_pred HHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 048207 321 MIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLA 400 (466)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 400 (466)
.++..... ........+...+..+....+.+..+..+++|.+|++.|++..|+...++-.|+.++...+.+
T Consensus 394 ~~~~~y~~---------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~ 464 (538)
T KOG0252|consen 394 VIAGPYNQ---------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLY 464 (538)
T ss_pred HHcCCccc---------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhH
Confidence 77654311 112222333444444555666677778999999999999999999999999999999999999
Q ss_pred HHh-----hcccceehhhHHHHHHHHHhhheecccCCCCCHHHHHHHHcccc
Q 048207 401 MLC-----HFKAGVFFFFGGWLTVMTTFVHFFLPETKNVPIELMDKVWREHW 447 (466)
Q Consensus 401 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (466)
+.+ ..+....++..+.+.+.+.+..+++||+++|+++|++++.+.+.
T Consensus 465 ~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~~~~~ 516 (538)
T KOG0252|consen 465 LTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEEESNG 516 (538)
T ss_pred hhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChhhccc
Confidence 998 55555556666667777777788889999999999866554433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=273.35 Aligned_cols=350 Identities=17% Similarity=0.249 Sum_probs=232.3
Q ss_pred HhhcccccccccCCccccccccCCcchhHHHH-Hhh-----hHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhh
Q 048207 10 KKFFPEVNRKMREDTKVSDYCKFDSQLLTSLT-SSL-----YITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGG 83 (466)
Q Consensus 10 ~~f~~~~~~~~~~~~~i~~~~~~s~~~~g~~~-s~~-----~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~ 83 (466)
.+++|+...... .|.+++|++.++.+.+.+. +.. .++..+++++.|+++||+|||++++.+..++.+++++++
T Consensus 26 ~~~~d~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~ 104 (434)
T PRK15075 26 LEMFDFFLFGFY-ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIA 104 (434)
T ss_pred HHHHHHHHHHHH-HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence 344455544443 7889999999888876543 332 233347899999999999999999999999999999999
Q ss_pred hccchh--------HHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC----
Q 048207 84 SAFNIY--------MLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK---- 151 (466)
Q Consensus 84 ~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---- 151 (466)
++++++ .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.++..+....
T Consensus 105 ~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~ 184 (434)
T PRK15075 105 FVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQ 184 (434)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999987 46889999999999999999999999999999999999999998888888888777654211
Q ss_pred -CCcchHHHHHhhhHHHHHHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHH
Q 048207 152 -GGWGWKISLAMAAAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKK 230 (466)
Q Consensus 152 -~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (466)
+.+|||++|++..+...+........||++++..++ ++.+.+..+++
T Consensus 185 ~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~--------------------------------~~~~~~~~~~~ 232 (434)
T PRK15075 185 MAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK--------------------------------HRPSMREIFRS 232 (434)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh--------------------------------hccccccHHHH
Confidence 236899999986554333322222334432110000 00000111111
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeeh
Q 048207 231 IIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFL 309 (466)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 309 (466)
..+. ++.+....+..+.....++....|.|.|+++ .|++..+.. .......++.+++.++.|+++||++||+.+.
T Consensus 233 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~ 308 (434)
T PRK15075 233 LAAN---WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSL-LVTLCVGVSNFIWLPIGGALSDRIGRRPVLI 308 (434)
T ss_pred HHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1111 1222222222222334456778889999876 688877776 7777888889999999999999999998876
Q ss_pred hhhHHHHHHHHH-HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHH
Q 048207 310 LGGIQMLVSQVM-IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGL 388 (466)
Q Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 388 (466)
.+..+..+.... +.... .............+.+.+++.. .+....+..|.+|++.|+++.++.+.++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~e~~p~~~rg~~~g~~~~~~~ 377 (434)
T PRK15075 309 AFTVLAILTAYPALSWLV----------AAPSFARMLAVELWLSFLYGSY-NGAMVVALTEVMPAEVRTAGFSLAYSLAT 377 (434)
T ss_pred HHHHHHHHHHHHHHHHHH----------cCCchHHHHHHHHHHHHHHHHH-HhhHHHHHHHHCCCCccchheeHHHHHHH
Confidence 654433222111 11111 0011111112122222233322 22224556899999999999999776666
Q ss_pred H-HHHHHHHHHHHHHhhccc
Q 048207 389 L-FTSLVAQTFLAMLCHFKA 407 (466)
Q Consensus 389 ~-~~~~~~~~~~~~~~~~~~ 407 (466)
. ++.++|.+.+.+.+..++
T Consensus 378 ~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 378 AIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHhhhHHHHHHHHHHhcCC
Confidence 5 588899999999998874
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=266.00 Aligned_cols=349 Identities=12% Similarity=0.056 Sum_probs=251.2
Q ss_pred CCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 22 EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 22 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
..|.+++++|+|.++.|++.+++.+++.+++++.|+++||+|||+++..+..+.+++.+++++++|++.+++.|++.|++
T Consensus 25 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 104 (377)
T TIGR00890 25 LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAG 104 (377)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh-hcccCC
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS-LFLPET 180 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es 180 (466)
.+...+.....+.|++| ++|+++.++...+.++|..+++.+...+.+. .+||+.|++.++..++..+.. ++++|+
T Consensus 105 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (377)
T TIGR00890 105 VGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL---EGVPAAFIYMGIIFLLVIVLGAFLIGYP 180 (377)
T ss_pred HHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99888888888999987 5799999999999999987766555444432 569999999888877765444 445544
Q ss_pred hhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHh
Q 048207 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISF 260 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
|+.. .+++ ++ .++.+.+.++.++++..+... +..+...........
T Consensus 181 ~~~~-~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 226 (377)
T TIGR00890 181 PGQL-IKTN--IE---------------------------VSVKDYTVWEMLRTPQFWVLY----LSFFLNAVSGLLLIG 226 (377)
T ss_pred chhc-cccC--cc---------------------------cchhhhhHHHHHcCccHHHHH----HHHHHHhHHHHHHHH
Confidence 3210 0000 00 000001122333332222221 112222122233344
Q ss_pred hHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 261 YAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
+.+.+.++.+.+..+.+ .......++.++++++.+++.||++||+.+..+.....++.+.+.... ...
T Consensus 227 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 294 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLV-LAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-----------MLN 294 (377)
T ss_pred HHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-----------cch
Confidence 45566677787776666 778888999999999999999999999998887777777665544321 111
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHH
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (466)
.........+.+.+.+...... ..+..|.+|+++|+++.|+.+....++..++|.+.+.+.+..++...+...+++.++
T Consensus 295 ~~~~~~~~~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 295 DVLFLATVALVFFTWGGTISLF-PSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred hHHHHHHHHHHHHHhccchhcc-HHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 2222222333344443333333 455679999999999999999999999999999999999988876666555544444
Q ss_pred H
Q 048207 421 T 421 (466)
Q Consensus 421 ~ 421 (466)
+
T Consensus 374 ~ 374 (377)
T TIGR00890 374 S 374 (377)
T ss_pred h
Confidence 3
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=268.68 Aligned_cols=381 Identities=14% Similarity=0.032 Sum_probs=247.5
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc----chhHHHHHHHHh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF----NIYMLIFGRLLL 98 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~ 98 (466)
.|.+.++ |+|+.+.+++.+++.+++++++++.|+++||+|||+++.++.++.+++.+++++++ +++.+++.|++.
T Consensus 52 ~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (452)
T PRK11273 52 MPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 130 (452)
T ss_pred hHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence 4677888 99999999999999999999999999999999999999999999999999888763 788899999999
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHH-HHHHHHhhhhcccCCCcchHHHHHhhhHHHHHH-HHHhhc
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGI-LSANLLNYGTQKIKGGWGWKISLAMAAAPASIL-TIGSLF 176 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~ 176 (466)
|++.+...+.....+.|++|+++|++++++++.+.++|. +.+++++..+... .+||+.|++.+++.++. ++..++
T Consensus 131 gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~gw~~~f~i~~~~~~~~~~l~~~~ 207 (452)
T PRK11273 131 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF---NDWHAALYMPAFAAILVALFAFAM 207 (452)
T ss_pred HHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888889999999999999999999999986 4556554333222 36999999988776664 455566
Q ss_pred ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhh-hhhhHHHHHHHHHHHHhcccc
Q 048207 177 LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQR-KYRPQLVMAILIPFFQQVTGV 255 (466)
Q Consensus 177 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 255 (466)
+||+|+....++ .++.++ + .+. ..+++++.+.+.++.+++ ..+++.++...+..+......
T Consensus 208 ~~~~~~~~~~~~--~~~~~~-------~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (452)
T PRK11273 208 MRDTPQSCGLPP--IEEYKN-------D--YPD-------DYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR 269 (452)
T ss_pred ccCCHhhcCCCC--hhhhhh-------c--ccc-------ccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 788875321110 111000 0 000 000000011122232211 122233333333333333344
Q ss_pred hhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcC--Ceeeehh-hhHHHHHHHHHHHHHHHhhcC
Q 048207 256 NIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLG--RKVLFLL-GGIQMLVSQVMIGSIMAAQLG 331 (466)
Q Consensus 256 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 331 (466)
+....|.|.++++ .|++..+.+ ....+..++.+++.++.|+++||++ ||+...+ ...+..++.+.+...
T Consensus 270 ~~~~~~~P~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~------ 342 (452)
T PRK11273 270 YGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN------ 342 (452)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh------
Confidence 5677789999876 678877776 6777888899999999999999984 4433221 111222222222111
Q ss_pred CCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHH-HHHHHHHHHhhccccee
Q 048207 332 DHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSL-VAQTFLAMLCHFKAGVF 410 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 410 (466)
+....+.........+.... ........+..|.+|++.||+++|+.+...++++.+ +|.+.+.+.|+.++...
T Consensus 343 -----~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~ 416 (452)
T PRK11273 343 -----PAGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 416 (452)
T ss_pred -----cccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHH
Confidence 11112222222222222211 111112334569999999999999999999998765 68999999999887666
Q ss_pred hhhHHHHHHHHHhhheecccCCCCCHHH
Q 048207 411 FFFGGWLTVMTTFVHFFLPETKNVPIEL 438 (466)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (466)
+...+.+.+++++........++|++||
T Consensus 417 f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 417 FMVMIGGSILAVILLIVVMIGEKRHHEE 444 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 5555555555555544444444444443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=273.35 Aligned_cols=372 Identities=17% Similarity=0.164 Sum_probs=251.5
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.
T Consensus 43 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 122 (496)
T PRK03893 43 LTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGM 122 (496)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPN 182 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~ 182 (466)
+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+. ++||+.|++..+..++.++....+||+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~~p~~~~ 199 (496)
T PRK03893 123 AGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV---WGWRALFFIGILPIIFALWLRKNLPEAED 199 (496)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 999999999999999999999999999999999999999998887764 56999998866655555555556788765
Q ss_pred hhhhcCCcHHHHHHHHHHHhCccchHHHHH-HHHH--H--hhccccCCcchH-------------Hh-h-hhhhhhHHHH
Q 048207 183 SIIQRTNDHQKAEKMLQRVHGTADVQAELE-DLIR--A--SSDSKNINHPFK-------------KI-I-QRKYRPQLVM 242 (466)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~--~~~~~~~~~~~~-------------~~-~-~~~~~~~~~~ 242 (466)
+..++++ .++.++..+.....+....... .... . ..-.......+. .. . ....+++...
T Consensus 200 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (496)
T PRK03893 200 WKEKHAG-KAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGV 278 (496)
T ss_pred hhhhccc-cccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 4322211 1111111111100000000000 0000 0 000000000000 00 0 0001111111
Q ss_pred HHHHHHHHhcccchhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHH
Q 048207 243 AILIPFFQQVTGVNIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVM 321 (466)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 321 (466)
......+...........+.|.+++ +.|++..+.+ .......++.+++.++.|++.||++||+.+..+..+..+..+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g-~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 357 (496)
T PRK03893 279 MLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVA-NVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIP 357 (496)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 1111122222222345567888884 7889888888 8888899999999999999999999998877665554444333
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 048207 322 IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAM 401 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (466)
+... .....+.......+.+ +.+.+..+....+..|.+|++.|++++|+.+....+++.++|.+.|.+
T Consensus 358 ~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l 425 (496)
T PRK03893 358 VFAI-----------GGANVWVLGLLLFFQQ-MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALI 425 (496)
T ss_pred Hhhc-----------cccHHHHHHHHHHHHH-HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHH
Confidence 2221 1111222222222111 222222333345668999999999999999999999999999999999
Q ss_pred Hhhcccceeh
Q 048207 402 LCHFKAGVFF 411 (466)
Q Consensus 402 ~~~~~~~~~~ 411 (466)
.+..++...+
T Consensus 426 ~~~~g~~~~~ 435 (496)
T PRK03893 426 AQRLDLGTAL 435 (496)
T ss_pred hccCChHHHH
Confidence 9988865443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=268.20 Aligned_cols=373 Identities=15% Similarity=0.131 Sum_probs=257.9
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+++++|+|..+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.+++++++|++.+++.|++.|++.
T Consensus 17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 96 (399)
T TIGR00893 17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAE 96 (399)
T ss_pred HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh-hcccCCh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS-LFLPETP 181 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es~ 181 (466)
+...+....++.|++|+++|++.+++.+....+|.++++.+++.+.+. .+||+.|++.+++.++..+.. ++.||+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 97 APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH---FSWQWAFIIEGVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHHhhheecCCC
Confidence 999999999999999999999999999999999999999999877664 459999999887776655444 4466665
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
+.. +..++++.+...++.. ++. +..++++..+...++.+++ +.++...+..+...........+
T Consensus 174 ~~~--~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 237 (399)
T TIGR00893 174 QKA--KWLTEEEKYIVVGGLL---------AEQ-QGKGPSTPKKYQIKELLKD----RRVWGLALGQFLVNIGLGFFLTW 237 (399)
T ss_pred Ccc--ccCCHHHHhhcchhhc---------ccc-ccccccCCCccchHHHhcC----HHHHHHHHHHHHHHhHHHHHHHH
Confidence 311 0000111000000000 000 0001111112233444433 22333333344444455667778
Q ss_pred HHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhh-hHHHHHHHHHHHHHHHhhcCCCCCccch
Q 048207 262 APVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLG-GIQMLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 262 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
.|.+++ ..+.+..+.+ .......++.+++.++.+++.||++||+..... .....++.+......... . ..+
T Consensus 238 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~ 310 (399)
T TIGR00893 238 FPTYLVQERGLSILEAG-FMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT-N-----YVN 310 (399)
T ss_pred HHHHHHHHhcccHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh-c-----cch
Confidence 888875 4677777777 778888899999999999999999998632221 111112111111111000 0 011
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cceehhhHHHHH
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK-AGVFFFFGGWLT 418 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 418 (466)
..+.......+. .. ..+..+....+..|.+|++.|+++.|+.+.+..+++.++|.+.+.+.+..+ +...+...+.+.
T Consensus 311 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~ 388 (399)
T TIGR00893 311 IPYAALALVALG-FF-GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALA 388 (399)
T ss_pred hHHHHHHHHHHH-Hh-chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHH
Confidence 222222222222 22 222455557777899999999999999999999999999999999999887 655555444444
Q ss_pred HHHHh
Q 048207 419 VMTTF 423 (466)
Q Consensus 419 ~~~~~ 423 (466)
+.+.+
T Consensus 389 ~~~~~ 393 (399)
T TIGR00893 389 LIGAL 393 (399)
T ss_pred HHHHH
Confidence 44433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=266.51 Aligned_cols=390 Identities=16% Similarity=0.135 Sum_probs=280.3
Q ss_pred ccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhh
Q 048207 28 DYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQ 107 (466)
Q Consensus 28 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 107 (466)
+.++.+.....+..+++++|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|+++|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChhhhhhc
Q 048207 108 SVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPNSIIQR 187 (466)
Q Consensus 108 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~ 187 (466)
....+++|++++++|+.+..+ ......|..+++..++++.. +||+.+++..+++++.++.+++.||+|||+..+
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK 264 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence 999999999999999999999 55555555566665555554 499999999999998877777778999999999
Q ss_pred CCcHHHHHHHHHHHhCcc----chHHHHHHH-H-HHhh-ccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHh
Q 048207 188 TNDHQKAEKMLQRVHGTA----DVQAELEDL-I-RASS-DSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISF 260 (466)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
++ .+++.+.+++..+.+ +.+...+.. . +..+ ...+++..+.++++.+..++......+..+.....++..
T Consensus 265 g~-~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl-- 341 (521)
T KOG0255|consen 265 GR-IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGL-- 341 (521)
T ss_pred Cc-hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhh--
Confidence 99 788888888875433 111111111 1 1111 111123446777766533333333333232111112221
Q ss_pred hHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 261 YAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
+......|.+.. ......+.....+....+...|+.|||.....+..+..++++..++... ...
T Consensus 342 --~~~~~~lg~~~~----~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 405 (521)
T KOG0255|consen 342 --SLNVSGLGGNIY----LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD----------DLG 405 (521)
T ss_pred --hhhhhhcCchHH----HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc----------cch
Confidence 111223333322 3445555577888888899999999999999999999999988887742 111
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehh-hHHHHHH
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFF-FGGWLTV 419 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 419 (466)
.+...+...+..++.+.++... +.+.+|++|+..|..+.+..+....+++.++|.+...... ........ +.....+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l 483 (521)
T KOG0255|consen 406 GWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALL 483 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHH
Confidence 1233444444444445555555 7788999999999999999999999999888877755444 33222222 3555666
Q ss_pred HHHhhheecccCCCCCHHHHHHHHc
Q 048207 420 MTTFVHFFLPETKNVPIELMDKVWR 444 (466)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (466)
.+.+...++||++++.+.+..++.+
T Consensus 484 ~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 484 LGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHHhcCcccCCCCCchhHHHHH
Confidence 6666778999999988765444333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=258.81 Aligned_cols=343 Identities=14% Similarity=0.052 Sum_probs=242.1
Q ss_pred CCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 22 EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 22 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
..|.+++|+|+|..+.|++.+.+.+++.++++++|+++||+|||+++..+..+.+++.+++++++|++.+++.|+++|++
T Consensus 25 ~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~ 104 (382)
T PRK10091 25 VLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFP 104 (382)
T ss_pred ChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHH-HhhcccCC
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTI-GSLFLPET 180 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~es 180 (466)
.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+. .+||+.|++.++..++..+ ..+++||.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~gwr~~f~~~~~~~~~~~~~~~~~lp~~ 181 (382)
T PRK10091 105 HGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE---FSWRYTFLLIAVFNIAVLASIYFWVPDI 181 (382)
T ss_pred hHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9998888899999999999999999999999999999999998887764 4699999998887666544 34457775
Q ss_pred hhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHh
Q 048207 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISF 260 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
++ +++ . +. +..+ +.++++. .+. .................
T Consensus 182 ~~----~~~-~-~~------------------------------~~~~-~~~~~~~---~~~-~~~~~~~~~~~~~~~~~ 220 (382)
T PRK10091 182 RD----EAK-G-GL------------------------------REQF-HFLRSPA---PWL-IFAATMFGNAGVFAWFS 220 (382)
T ss_pred Cc----ccc-c-CH------------------------------HHHH-HHhcChH---HHH-HHHHHHHHHHHHHHHHH
Confidence 42 000 0 00 0000 1112211 111 11111111112222333
Q ss_pred hHHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccch
Q 048207 261 YAPVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 261 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
+.+.++ +..|.++...+ .......++.++++++.+++.||+++|+.+..+..+..++.+++.... +
T Consensus 221 ~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~------------~ 287 (382)
T PRK10091 221 YIKPYMMFISGFSETSMT-FIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG------------G 287 (382)
T ss_pred HHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH------------h
Confidence 444444 45788888777 888899999999999999999999999988877777666655443321 1
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccceehhhHHHHH
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF-KAGVFFFFGGWLT 418 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 418 (466)
..+......++.+.+......+.......+..|++.++.+ ..+....+|..++|.+.|.+.|.. ++...+...+...
T Consensus 288 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~ 365 (382)
T PRK10091 288 MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLS 365 (382)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHH
Confidence 1222233333333333323333323333444455555544 346678899999999999999964 5655555554444
Q ss_pred HHHHh
Q 048207 419 VMTTF 423 (466)
Q Consensus 419 ~~~~~ 423 (466)
++.+.
T Consensus 366 ~~~~~ 370 (382)
T PRK10091 366 FAAMS 370 (382)
T ss_pred HHHHH
Confidence 44433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=260.89 Aligned_cols=345 Identities=14% Similarity=0.140 Sum_probs=245.7
Q ss_pred cccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc--------cchhHHHHHHH
Q 048207 25 KVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA--------FNIYMLIFGRL 96 (466)
Q Consensus 25 ~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--------~~~~~l~~~r~ 96 (466)
.+++++|+|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+.+.++ .+++.+++.|+
T Consensus 41 ~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 120 (399)
T PRK05122 41 YVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRL 120 (399)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999888877766543 25678999999
Q ss_pred HhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc
Q 048207 97 LLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF 176 (466)
Q Consensus 97 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 176 (466)
++|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+. .+||+.+++.++..++..+....
T Consensus 121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~ 197 (399)
T PRK05122 121 LLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW---GGLAGLGLLIMLLALLGLLLARP 197 (399)
T ss_pred HHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999887764 45999988777665544433333
Q ss_pred ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccch
Q 048207 177 LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVN 256 (466)
Q Consensus 177 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (466)
.|++++ +++ + +.+.++.+++...... ...+. ...+.
T Consensus 198 ~~~~~~----~~~---~-------------------------------~~~~~~~~~~~~~~~~--~~~~~----~~~~~ 233 (399)
T PRK05122 198 RPAVPP----VKG---E-------------------------------RLPFRRVLGRVWPYGM--GLALA----SIGFG 233 (399)
T ss_pred CCCCCC----CCc---c-------------------------------chhHHHHHHHHHHHHH--HHHHH----HHHHH
Confidence 333221 000 0 0011111211111111 11111 11233
Q ss_pred hHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCc
Q 048207 257 IISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGF 336 (466)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
....+.+.+.++.+.+ ... .......++.+++.++.+++.||+++|+.+..+..+..++..++...
T Consensus 234 ~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----------- 299 (399)
T PRK05122 234 TIATFITLYYAARGWD--GAA-LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA----------- 299 (399)
T ss_pred HHHHHHHHHHHHcccc--cch-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 4555667776666653 233 45567788889999999999999999998877776666665554432
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHH
Q 048207 337 SIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGW 416 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (466)
++.+.......+.+.+.+..++.. .....|..|++.|+++.|+.+....++..+++++.+.+.+..++...+...+.
T Consensus 300 --~~~~~~~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 376 (399)
T PRK05122 300 --PSPWMALIGAALTGFGFSLVFPAL-GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAAL 376 (399)
T ss_pred --ccHHHHHHHHHHHHHhHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 123333444455555555444333 33446888999999999999999999999999999999998887666665555
Q ss_pred HHHHHHhhheecccCCC
Q 048207 417 LTVMTTFVHFFLPETKN 433 (466)
Q Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (466)
+.+++.+.....+++++
T Consensus 377 ~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 377 AALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHHhccccc
Confidence 55555555555554443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=267.25 Aligned_cols=368 Identities=15% Similarity=0.097 Sum_probs=248.3
Q ss_pred cccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc--cchhHHHHHHHHhhhhhhhhh
Q 048207 29 YCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA--FNIYMLIFGRLLLGVGIDFGN 106 (466)
Q Consensus 29 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~ 106 (466)
|++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 899999999999999999999999999999999999999999999999999887554 668899999999999999999
Q ss_pred hhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc-ccCChhhhh
Q 048207 107 QSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF-LPETPNSII 185 (466)
Q Consensus 107 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~es~~~~~ 185 (466)
+....++.|++|+++|++++++...+..+|.++++.+++.+.+.. .+||+.|++.++++++..+.+++ .+|+|+..
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~- 226 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH- 226 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHHHHHHHHHhcCCcccC-
Confidence 999999999999999999999999999999999999988877642 26999999999887776555444 56766421
Q ss_pred hcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHH
Q 048207 186 QRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVL 265 (466)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (466)
++..++.++.. ++..++++++.+.+.++++.+++ +.++...+..+.....++.+..|.|.|
T Consensus 227 --~~~~~~~~~~i-------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lp~~ 287 (465)
T TIGR00894 227 --PCISKFEKKYI-------------NSSLQGQKGSTRQSLPIKAIPKS----LPVWAIWFAIFGHFWLYTILPTYLPTF 287 (465)
T ss_pred --CCCCHHHHHHH-------------HhhcccccCCCCCCCCHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11011110100 00000000011112345555443 334444455555555567778899988
Q ss_pred Hhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhh---hHHHHHHH---HHHHHHHHhhcCCCCCccc
Q 048207 266 FRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLG---GIQMLVSQ---VMIGSIMAAQLGDHGGFSI 338 (466)
Q Consensus 266 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 338 (466)
+++ .|++..+.+ ....+..++.+++.++.|+++||+++|+..... .....++. ....+.... ..
T Consensus 288 l~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 358 (465)
T TIGR00894 288 ISWVLRVSGKENG-LLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY--------LS 358 (465)
T ss_pred HHHHhCcChHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--------cC
Confidence 854 688888877 788888999999999999999998755432111 01111111 111111100 00
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc--c-cceehhhHH
Q 048207 339 GYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF--K-AGVFFFFGG 415 (466)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~ 415 (466)
......+....+.+.+.+..... ......|..| +.+|.+.|+.+..+.+++.++|.+.+.+.+.. + +...+...+
T Consensus 359 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~ 436 (465)
T TIGR00894 359 AAFYLTIIILTLANAVSSGPLAG-VLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMA 436 (465)
T ss_pred CchHHHHHHHHHHHHHhhhhhhh-hhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHH
Confidence 11222233333333333222222 2344456666 48999999999999999999999999887754 2 333444444
Q ss_pred HHHHHHHhhheecc
Q 048207 416 WLTVMTTFVHFFLP 429 (466)
Q Consensus 416 ~~~~~~~~~~~~~~ 429 (466)
...+++.+......
T Consensus 437 ~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 437 FVNILCVIFYLIFG 450 (465)
T ss_pred HHHHHHHHHeeeee
Confidence 44444444444443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=264.91 Aligned_cols=366 Identities=11% Similarity=-0.004 Sum_probs=262.0
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhh-----ccchhHHHHHHHH
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS-----AFNIYMLIFGRLL 97 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l 97 (466)
.|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+..+. .++++.+++.|++
T Consensus 40 ~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 119 (417)
T PRK10489 40 VPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLW 119 (417)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 35566778889999999999999999999999999999999999999888877777665442 5688999999999
Q ss_pred hhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc
Q 048207 98 LGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL 177 (466)
Q Consensus 98 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 177 (466)
+|++.+...+...+++.|+.|+++|+++.++......+|..+|+.+++.+.+. .+||+.|++.++..++..+..+.+
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~l 196 (417)
T PRK10489 120 DGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA---GGVAWNYGLAAAGTFITLLPLLRL 196 (417)
T ss_pred HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhC
Confidence 99999988888899999999999999999999999999999999999988764 359999998887777666666677
Q ss_pred cCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchh
Q 048207 178 PETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNI 257 (466)
Q Consensus 178 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (466)
||+++.. +++ .++. ++. +..++..++++..+.......+ .. ....
T Consensus 197 ~~~~~~~--~~~-~~~~-----------------~~~----------~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~ 241 (417)
T PRK10489 197 PALPPPP--QPR-EHPL-----------------RSL----------LAGFRFLLASPVVGGIALLGGL----LT-MASA 241 (417)
T ss_pred CCCCCCC--ccc-ccch-----------------HHH----------HHHHHHHHcChHHHHHHHHHHH----HH-HHHh
Confidence 7764310 000 0000 000 0112223333222222211111 11 1234
Q ss_pred HHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCc
Q 048207 258 ISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGF 336 (466)
Q Consensus 258 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
...+.|.+.++ .|.+....+ .......++.+++.++.+++.||.++++.+..+..+..++.+++...
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~----------- 309 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIG-LLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM----------- 309 (417)
T ss_pred HHHhhHHHHHhccCCChhHhH-HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-----------
Confidence 55677888877 788877777 77888889999999999999999777777776666665555444322
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceeh-hhHH
Q 048207 337 SIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFF-FFGG 415 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 415 (466)
++.+...+..++.+.+.+.. .+....+..|..|++.|++++|+.+....++..+++.+.|.+.+..+....+ ..++
T Consensus 310 --~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~ 386 (417)
T PRK10489 310 --PMWILAVLCLALFGYLSAIS-SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGF 386 (417)
T ss_pred --chHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHH
Confidence 22233333444444443322 2333566679999999999999999999999999999999999988854444 4555
Q ss_pred HHHHHHHhhheecccCCCCCHHHHHH
Q 048207 416 WLTVMTTFVHFFLPETKNVPIELMDK 441 (466)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
+..+++.+.....++.++++++|.++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 387 GLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHHHHHHHHHhcccccccccccccC
Confidence 55555666667777777766655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=266.16 Aligned_cols=361 Identities=12% Similarity=0.022 Sum_probs=257.0
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+|+|.+.++.+|+.+.|.++..++.+++|+++||+|||+++..+..++.++++++++++|++.++++|+++|+|.
T Consensus 29 ~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~ 108 (495)
T PRK14995 29 APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGA 108 (495)
T ss_pred HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcC-CCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHH-HHhhcccCC
Q 048207 103 DFGNQSVPLYLSEMA-PPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILT-IGSLFLPET 180 (466)
Q Consensus 103 g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~es 180 (466)
+...+.....+.+++ |+++|++++++......+|..+||.+++.+.+. .+||+.|++....+++.. +..+++||+
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~---~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 109 AMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH---FYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999888888887766 678999999999999999999999999999875 459999999887766654 344557776
Q ss_pred hhhhhhcCCcHHHHHHH------------HHHHhCcc-chHHHHHH-------HHHHhhccccCCcch--HHhhhhhhhh
Q 048207 181 PNSIIQRTNDHQKAEKM------------LQRVHGTA-DVQAELED-------LIRASSDSKNINHPF--KKIIQRKYRP 238 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~------------~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~ 238 (466)
++. ++++.+..... .+...... +.....-. .......+.+.+.+. .+++|++.
T Consensus 186 ~~~---~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~-- 260 (495)
T PRK14995 186 AGR---RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRI-- 260 (495)
T ss_pred CCC---CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcc--
Confidence 531 11111111100 00000000 00000000 000000011111121 23444332
Q ss_pred HHHHHHHHHHHHhcccchhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHH
Q 048207 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLV 317 (466)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 317 (466)
+....+..+...........+.|.+++. .|+++.+++ .......++..++.++.|++.||+|+|+.+..+..+..+
T Consensus 261 --~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 261 --ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAG-MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSAL 337 (495)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 2222222222333345566778888765 688888888 888889999999999999999999999887777766666
Q ss_pred HHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Q 048207 318 SQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQT 397 (466)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 397 (466)
+..++.... .....+......++.+.+.+....+.. ....+..|++.++.+.++.++...+|+.+++.+
T Consensus 338 ~~~~l~~~~----------~~~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai 406 (495)
T PRK14995 338 SFYGLAMTD----------FSTQQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAGAIETMAYELGAGLGIAI 406 (495)
T ss_pred HHHHHHHhc----------CCCchHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 655444321 112223334455566666666555553 344678899999999999999999999999999
Q ss_pred HHHHHhhc
Q 048207 398 FLAMLCHF 405 (466)
Q Consensus 398 ~~~~~~~~ 405 (466)
.+.+.++.
T Consensus 407 ~g~i~~~~ 414 (495)
T PRK14995 407 FGLLLSRS 414 (495)
T ss_pred HHHHHHHH
Confidence 99988753
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=263.62 Aligned_cols=362 Identities=13% Similarity=0.017 Sum_probs=227.9
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|+++|++.
T Consensus 59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 138 (476)
T PLN00028 59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL 138 (476)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcc----c--CCCcchHHHHHhhhHHHHHHHHHhhc
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQK----I--KGGWGWKISLAMAAAPASILTIGSLF 176 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~----~--~~~~~wr~~f~~~~~~~~~~~~~~~~ 176 (466)
+.. +....+++|++|+++|++++++.....++|..+++.+...+.. . .+..+||+.|++.++++++..+..++
T Consensus 139 ~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 139 ATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred Hhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 865 4456689999999999999999987777777777665544322 1 11247999999998887776555555
Q ss_pred cc-CChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccc
Q 048207 177 LP-ETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGV 255 (466)
Q Consensus 177 ~~-es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (466)
++ +.|+. + .++.++ +...++.+....+++.++++ ..+...+.++......
T Consensus 218 ~~~~~p~~-----~-~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 268 (476)
T PLN00028 218 LGQDLPDG-----N-YRELKK-------------------SGTMPKDSFSKVLRYGVTNY----RTWILALTYGYSFGVE 268 (476)
T ss_pred HcCcCCCC-----c-hhhHHh-------------------cCccccccHHHHHHHHHcCc----hhHHHHHHHHHHHHHH
Confidence 44 33320 0 000000 00000000001122222222 2222222222222233
Q ss_pred hhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeee----hhhhHHHHHHHHHHHHHHHhhc
Q 048207 256 NIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLF----LLGGIQMLVSQVMIGSIMAAQL 330 (466)
Q Consensus 256 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 330 (466)
.....+.|.++. +.|++...++ .......++.++++++.|+++||++||+.. ........+..+.+....
T Consensus 269 ~~~~~~~p~~l~~~~g~s~~~a~-~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~---- 343 (476)
T PLN00028 269 LTMDNIIAEYFYDRFGLSLETAG-AIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG---- 343 (476)
T ss_pred HHHHhHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc----
Confidence 445667777764 5688888887 888889999999999999999999876321 111111111111111111
Q ss_pred CCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccee
Q 048207 331 GDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVF 410 (466)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (466)
..++.+......++++.+....... .+.+..+..| +.++++.|+.+..+.+++.+++.+.+ ..+..++...
T Consensus 344 ------~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~ 414 (476)
T PLN00028 344 ------RANSLGAAIVVMILFSIFVQAACGA-TFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETG 414 (476)
T ss_pred ------ccchHHHHHHHHHHHHHHHHHhhhh-hcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhH
Confidence 0111222233333333333222222 2444456544 78999999998888888877776654 1122234444
Q ss_pred hhhHHHHHHHHHhhheec
Q 048207 411 FFFGGWLTVMTTFVHFFL 428 (466)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~ 428 (466)
+.+.+++.+++.++.++.
T Consensus 415 f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 415 ISLMGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHHHHHHHHHHHHHhe
Confidence 444444444454444444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=253.14 Aligned_cols=336 Identities=15% Similarity=0.089 Sum_probs=243.4
Q ss_pred CCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 22 EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 22 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
..|.+.+++|+|+++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++
T Consensus 42 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 121 (394)
T PRK10213 42 LLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLA 121 (394)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh-hcccCC
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS-LFLPET 180 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es 180 (466)
.+...+...+++.|++|+++|++++++...+.++|.+++|.+++.+.+. ++||+.|++.++++++..+.. ...||+
T Consensus 122 ~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 122 LGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred hHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999988775 469999999887666554333 346665
Q ss_pred hhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHh
Q 048207 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISF 260 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
|+. + ++ ...+.++.++++..+... +..+...........
T Consensus 199 ~~~-----~--~~------------------------------~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~ 237 (394)
T PRK10213 199 PGE-----P--SH------------------------------QKQNTFRLLQRPGVMAGM----IAIFMSFAGQFAFFT 237 (394)
T ss_pred Ccc-----c--cc------------------------------chhHHHHHhcCHHHHHHH----HHHHHHHHHHHHHHH
Confidence 420 0 00 000122233332222211 111222122233334
Q ss_pred h-HHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccch
Q 048207 261 Y-APVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 261 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
+ .|.+.++.|++....+ ......+++.+++.++.+++.||.+ |+.+..+..+..++...+.... +
T Consensus 238 ~~~p~~~~~~g~s~~~~g-~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~------------~ 303 (394)
T PRK10213 238 YIRPVYMNLAGFGVDGLT-LVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG------------S 303 (394)
T ss_pred HHHHHHHHhcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh------------h
Confidence 4 4777778898888777 7788888999999999999999954 4443333333333322222221 2
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHH
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (466)
..+......++.+.+++...... ..+..+..| +.++...++.....+++..+++.+.|.+.|..|....+..++..
T Consensus 304 ~~~~~~~~~~l~G~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~ 379 (394)
T PRK10213 304 DKIVATGVAIIWGLTFALVPVGW-STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTL 379 (394)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHH
Confidence 23444445555666655444444 333456666 45667777777888899999999999999988866555554433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=252.13 Aligned_cols=337 Identities=14% Similarity=0.121 Sum_probs=239.3
Q ss_pred cccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhh---hh-----ccchhHHHHHHH
Q 048207 25 KVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALG---GS-----AFNIYMLIFGRL 96 (466)
Q Consensus 25 ~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~-----~~~~~~l~~~r~ 96 (466)
.+++|+|+|..+.|++.+++.+++.++++++|+++||+||||++..+.+...++.+.. ++ .++++.+++.|+
T Consensus 41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 120 (392)
T PRK12382 41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL 120 (392)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999988777665432 22 357899999999
Q ss_pred HhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc
Q 048207 97 LLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF 176 (466)
Q Consensus 97 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 176 (466)
++|++.+...+...+++.|++|+++|++++++.+.+...|..++|.+++.+.+. .+||+.+.+..+..++.......
T Consensus 121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~ 197 (392)
T PRK12382 121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH---FGFAALALTTMVLPLLAWAFNGT 197 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998999999999999999999999999999999999999887764 45998877665544433333222
Q ss_pred ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccch
Q 048207 177 LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVN 256 (466)
Q Consensus 177 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (466)
.||.+.. +++ +.+.++.++... ++... ..+. .....
T Consensus 198 ~~~~~~~---~~~-----------------------------------~~~~~~~~~~~~-~~~~~-~~l~----~~~~~ 233 (392)
T PRK12382 198 VRKVPAH---AGE-----------------------------------RPSLWSVVGLIW-KPGLG-LALQ----GVGFA 233 (392)
T ss_pred ccCCCCC---ccc-----------------------------------CchHHHHHHHHH-HhHHH-HHHH----HHHHh
Confidence 3332210 000 001111111111 11111 1111 11233
Q ss_pred hHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCc
Q 048207 257 IISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGF 336 (466)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
....+.|.++++.+.+. .. .......++.++++++.+++.||+++|+.+..+..+..++.+++...
T Consensus 234 ~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----------- 299 (392)
T PRK12382 234 VIGTFVSLYFASKGWAM--AG-FTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA----------- 299 (392)
T ss_pred HHHHHHHHHHHhcCCch--hH-HHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----------
Confidence 45566677777766543 33 45556777888999999999999999999888877777666554432
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHH
Q 048207 337 SIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGW 416 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (466)
++.+.......+.+.+.+...+.. .....|.+|++.|+++.|+.+....++..++|.+.+.+.++.++...+...+.
T Consensus 300 --~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~ 376 (392)
T PRK12382 300 --PTAWVALAGAALTGAGCSLIFPAL-GVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAI 376 (392)
T ss_pred --ccHHHHHHHHHHHHHHHHhHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 122333344444555544433333 34446889999999999999999999999999999999999887766666655
Q ss_pred HHHHHHhhh
Q 048207 417 LTVMTTFVH 425 (466)
Q Consensus 417 ~~~~~~~~~ 425 (466)
+.+++.+..
T Consensus 377 ~~~~~~~~~ 385 (392)
T PRK12382 377 SAVLGIIVT 385 (392)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=258.50 Aligned_cols=357 Identities=19% Similarity=0.222 Sum_probs=252.8
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.++..++++++.+++.|++.|++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (398)
T TIGR00895 40 APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGL 119 (398)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhccc
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHH-HHHHhhcccCCh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASI-LTIGSLFLPETP 181 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~es~ 181 (466)
+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+. .+||+.|++.++..++ ..+...++||++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 120 GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV---FGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred ccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc---ccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999998887764 4699999988655444 445556689888
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
++...+ + .++.++..++.......+.+ ++..++.++++..+...+..++.+..+. .....+..+.....+.....+
T Consensus 197 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 272 (398)
T TIGR00895 197 DFLVSK-R-PETVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKALFQGKTARI-TVLLWLLYFMLLVGVYFLTNW 272 (398)
T ss_pred hHHHhc-C-HHHHHHHHHHHHHhcccccc-ccccccccccchhhHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 655443 2 33332222222111100000 0000000000001111222222222222 222223333333445666778
Q ss_pred HHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 048207 262 APVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYA 341 (466)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (466)
.|.+.++.+.+....+ .......++.+++.++.+++.||+++|+.. ....+..+...++.... ...
T Consensus 273 ~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~~ 338 (398)
T TIGR00895 273 LPKLMVELGFSLSLAA-TGGALFNFGGVIGSIIFGWLADRLGPRVTA-LLLLLGAVFAVLVGSTL------------FSP 338 (398)
T ss_pred HHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHHh------------hCH
Confidence 8877788898888777 788888999999999999999999998433 33333333322222211 123
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 048207 342 YLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAM 401 (466)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (466)
+......++.+.+.+...... ..+..|.+|++.|+++.|+.+.+..++..++|.+.|.+
T Consensus 339 ~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 339 TLLLLLGAIAGFFVNGGQSGL-YALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 333444455555555444444 66678999999999999999999999999999998865
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=256.29 Aligned_cols=351 Identities=11% Similarity=0.017 Sum_probs=249.0
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|++++++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+..+..++.++++++++++.+++.|+++|++.
T Consensus 30 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~ 109 (394)
T PRK03699 30 MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVS 109 (394)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPN 182 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~ 182 (466)
+...+...+++.|++|+++|++.++..+....+|..++|.+.+.+... ..+||+.|.+.+++.++..+..++ ++.|+
T Consensus 110 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~ 186 (394)
T PRK03699 110 GITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR--SIEWYWVYACIGLVYVAIFILTLF-SEFPA 186 (394)
T ss_pred HhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHh-cCCcc
Confidence 999999999999999999999999999888999988988887665431 146999999888776665444333 22221
Q ss_pred hhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhH
Q 048207 183 SIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYA 262 (466)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (466)
. ++++ . + ++++ .. +... ++.++...+..+.....++.+..|.
T Consensus 187 ~--~~~~-~-~-------------------------~~~~----~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (394)
T PRK03699 187 L--GKHA-P-K-------------------------ADKP----VA----KEKW-GIGVLFLAIAALLYILAQLTFISWV 228 (394)
T ss_pred c--cccC-c-c-------------------------ccCc----cc----cccC-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0 0 0000 00 0111 1122222333333333455677889
Q ss_pred HHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 048207 263 PVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYA 341 (466)
Q Consensus 263 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (466)
|.+++ +.|++..+.+ .......++..+++++.++++||+++|+.+.....+..+...++... ++.
T Consensus 229 p~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~ 294 (394)
T PRK03699 229 PEYAQKKFGMSLEDAG-NLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT-------------DDP 294 (394)
T ss_pred HHHHHHHcCCChHHhh-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc-------------CCc
Confidence 99985 5688888877 77788888999999999999999999988776655554443333221 112
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHHH
Q 048207 342 YLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMT 421 (466)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (466)
+......+..+.+.+..++.. ..+..|..| +.++...+.......+|..++|.+.|.+.+..++...+.....+.+++
T Consensus 295 ~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~ 372 (394)
T PRK03699 295 SHLLYAILGLGFFSSAIYTTI-ITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVV 372 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHH
Confidence 222333334443333233322 344456555 446777888899999999999999999999888665555444444444
Q ss_pred Hhhheeccc
Q 048207 422 TFVHFFLPE 430 (466)
Q Consensus 422 ~~~~~~~~~ 430 (466)
.+.....++
T Consensus 373 ~~~~~~~~~ 381 (394)
T PRK03699 373 FVMCILLGF 381 (394)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=252.41 Aligned_cols=346 Identities=15% Similarity=0.169 Sum_probs=241.5
Q ss_pred cCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhh
Q 048207 21 REDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGV 100 (466)
Q Consensus 21 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 100 (466)
...+++++.||++++..|++++.+.+.+.+++|++|+++|||+||+++.+|..++.++.+.++++..||+++++|.+.|+
T Consensus 54 gv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGi 133 (493)
T KOG1330|consen 54 GVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGI 133 (493)
T ss_pred hhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhcccC
Q 048207 101 GIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLFLPE 179 (466)
Q Consensus 101 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 179 (466)
|.+...|+++++++|.+|+.+|++++++++.+..+|..+|.+.+..+.++.. .|||.|++.++++++..++ .++.+|
T Consensus 134 GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 134 GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999888765 3999999999998887655 455677
Q ss_pred ChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHH
Q 048207 180 TPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIIS 259 (466)
Q Consensus 180 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
++|- . .+|.+. ..+..++....++|+. ...+.+......+...........+.
T Consensus 212 P~rg----a--~~~~~~--------------------~~~~~~~~ts~~kDl~-~l~~~~v~v~~sl~~~a~~fv~Gs~s 264 (493)
T KOG1330|consen 212 PERG----A--RDEVDG--------------------ENKMVKPFTSVWKDLK-VLAKIKVFVLSSLGIIAAQFVIGSLS 264 (493)
T ss_pred cccc----c--cccccc--------------------CCcCCCCccchHHHHH-HHHccCceeeehHHHHHHHHhccccc
Confidence 5531 0 111000 0000011112223322 22121222222222322223345556
Q ss_pred hhHHHHH----hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCe----eeehhhhHHHHH----HHHHHHHHHH
Q 048207 260 FYAPVLF----RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRK----VLFLLGGIQMLV----SQVMIGSIMA 327 (466)
Q Consensus 260 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~~~~----~~~~~~~~~~ 327 (466)
+|.|.+. +-.+++.+... ++..+...++.+|.+++|.++||+.|+ .......+.++. +...+.....
T Consensus 265 ww~p~~~~~~~~~~~~~~~~~~-ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~ 343 (493)
T KOG1330|consen 265 WWAPAFIYYSYELIGFDHNATL-IFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA 343 (493)
T ss_pred hhhhhHHHHHHHHhCCccccch-hhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh
Confidence 6666554 33466666666 888899999999999999999994332 222222222211 1111111111
Q ss_pred hhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHH-HHHHHHhhc
Q 048207 328 AQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQ-TFLAMLCHF 405 (466)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ 405 (466)
. .....+..+++.++........+.+....+ .|+.|++.|.++.++...+..+.+-.+++ +.|.+.|+.
T Consensus 344 ~--------~~~s~~~~~il~~~g~~~~~~~~a~n~~i~-l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 344 F--------TSSSMIFGLILFLVGETISWFNWATNNPIF-LEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred h--------hhHHHHHHHHHHHHHHHHHhccccccccee-eEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 0 223333333333333333334445554444 69999999999999998877776655555 888888865
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=259.09 Aligned_cols=357 Identities=14% Similarity=0.079 Sum_probs=243.8
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+++++|+|..+.+++.+++.++..+++++.|+++||+|||+++..+..+.+++.++++++++++.+++.|++.|++.
T Consensus 18 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 97 (379)
T TIGR00881 18 MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQ 97 (379)
T ss_pred hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHH-HHhhhhcccCCCcchHHHHHhhhHHHHHH-HHHhhcccCC
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSAN-LLNYGTQKIKGGWGWKISLAMAAAPASIL-TIGSLFLPET 180 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~es 180 (466)
+...+...+++.|++|+++|++++++...+..+|..+++ .++..+.+. .+||+.|++.+++.++. ++..++.||+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 98 GMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL---YSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred cccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 999999999999999999999999999999999999999 466555543 46999999888776654 4445557776
Q ss_pred hhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHh
Q 048207 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISF 260 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
|+....+++ ++.+ .+ +. + ++.++.+++.+..+...++.+++ +.++...+..+...........
T Consensus 175 ~~~~~~~~~--~~~~-------~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 237 (379)
T TIGR00881 175 PQSCGLPPA--EEMP-------NE-EP--D-GDAEKKEEELTKKQIFLQYVLLN----KVLWYISLGYVFVYVVRTGILD 237 (379)
T ss_pred ccccccCcc--ccCc-------cc-cc--c-cccccccccccchHHHHHHHHhc----chHHHHHHHHHHHHHHHHHHHH
Confidence 642111100 0000 00 00 0 00000000000011112233332 2233333333333333455667
Q ss_pred hHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccch
Q 048207 261 YAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 261 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
+.|.+++ +.+.+..+.+ .......++.+++.++.+++.||..+|+...............+...... +..
T Consensus 238 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 308 (379)
T TIGR00881 238 WSPLYLTQEKGFSKEKAS-WAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLN--------PAA 308 (379)
T ss_pred HHHHHHHHHhCCCHHHHH-HHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcC--------cch
Confidence 7788775 5688887777 78888899999999999999998644433222222222211111111100 111
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccce
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGV 409 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
..+.........+... ....+....+..|.+|++.|+++.|+.+....+++.++|.+.|.+.+..|+..
T Consensus 309 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 309 NPLMDLICLFALGFLV-YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred hHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccc
Confidence 2222223333333222 22223334556899999999999999999999999999999999999887653
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=251.85 Aligned_cols=334 Identities=13% Similarity=0.014 Sum_probs=246.3
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc-----chhHHHHHHHHh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF-----NIYMLIFGRLLL 98 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-----~~~~l~~~r~l~ 98 (466)
|...++++.+..+.+++.+++.++..+++++.|+++||+|||+++..+..+..++.++..+++ +++.+++.|+++
T Consensus 23 ~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (365)
T TIGR00900 23 PLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGIL 102 (365)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 445667888999999999999999999999999999999999999999999999998888887 999999999999
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc-
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL- 177 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~- 177 (466)
|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+. .+||+.|++.++..++..+..+.+
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~ 179 (365)
T TIGR00900 103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT---LGIKWAIWVDAVGFAISALLIVSVR 179 (365)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999988765 459999998877666554444333
Q ss_pred -cCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccch
Q 048207 178 -PETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVN 256 (466)
Q Consensus 178 -~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (466)
||+++ +++ ++..++ ..++. +..++..++++..+.......+ ......
T Consensus 180 ~~~~~~----~~~-~~~~~~-------------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 227 (365)
T TIGR00900 180 IPELAA----SEI-QALSNA-------------VLRDT----------REGIKFVLKNPLLRTLLLLALL----FNLVFA 227 (365)
T ss_pred cccCCC----ccc-cccchh-------------HHHHH----------HhHHHHHHcCcHHHHHHHHHHH----HHHHHH
Confidence 33221 000 000000 00000 1122333333322222222211 111222
Q ss_pred hHH-hhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCC
Q 048207 257 IIS-FYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG 334 (466)
Q Consensus 257 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
... .+.|.+.++ .+.+..+.+ .......++.+++.++.+++.||.+||+.+..+..+..++...+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 297 (365)
T TIGR00900 228 PAIVALFPYVQSKYLGRGSTHYG-WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--------- 297 (365)
T ss_pred HHHHHHhHHHHHHHhCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh---------
Confidence 233 667888765 788887777 78888899999999999999999999988877666555555544432
Q ss_pred CccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048207 335 GFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK 406 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
+ ++.+...+..++.+.+.+...... ..+..|..|++.|+++.|+.+....++..+++.+.|.+.|..|
T Consensus 298 --~-~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 298 --P-PNFPLFLVLWFAIGVGYGPINVPQ-GTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred --c-hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 123344445555555555443333 5666899999999999999999999999999999999988654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=264.02 Aligned_cols=365 Identities=12% Similarity=0.093 Sum_probs=244.0
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHH-HHHHhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIF-GRLLLGVG 101 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~-~r~l~G~~ 101 (466)
.|.+.+++|+|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.++++++++++.+++ .|++.|++
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~ 121 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLG 121 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 57789999999999999999999999999999999999999999999999999999999999999998865 57999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc-cCC
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL-PET 180 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~es 180 (466)
.+...+...+++.++++ ++|+++.++.+.+..+|..++|.+++.+.+. +|||+.|++.+++.++..+..+++ ++.
T Consensus 122 ~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~---~gwr~~f~~~~~~~~~~~v~~~~~~~~~ 197 (455)
T TIGR00892 122 LAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES---FGWRGSFLILGGLLLHCCVCGALMRPVG 197 (455)
T ss_pred chhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99877778888899996 7899999999999999999999998887764 469999999988776655444443 322
Q ss_pred hhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHh
Q 048207 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISF 260 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
+.. .+.+ .++ + +...+.++.+ +.+. +... ++..+....+.++++ .++......+.....+.....
T Consensus 198 ~~~--~~~~-~~~-~---~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~ 262 (455)
T TIGR00892 198 PSQ--RVSK-SKS-K---EGLPPDGSTK-KLSK--KSTA-EKINRFLDFSLFTHR----GFLVYLSGNVIMFLGFFAPII 262 (455)
T ss_pred ccc--cccc-ccc-c---ccCCCCCccc-cccc--cchh-hhhhhhcchHHhcCc----hHHHHHHHHHHHHHHccchHH
Confidence 210 0000 000 0 0000000000 0000 0000 000000001233332 222222223323333455566
Q ss_pred hHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhc--CCeeeehhhhHHH--HHHHHHHHHHHHhhcCCCCCc
Q 048207 261 YAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKL--GRKVLFLLGGIQM--LVSQVMIGSIMAAQLGDHGGF 336 (466)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 336 (466)
+.|.+.++.+++....+ ......+++.++++++.+++.||. ++|+...+..... .++.++....
T Consensus 263 ~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----------- 330 (455)
T TIGR00892 263 FLVPYAKDKGVDEYEAA-FLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA----------- 330 (455)
T ss_pred HHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 77888888888888877 788888999999999999999973 3333333222222 2222221111
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cceehhhHH
Q 048207 337 SIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK-AGVFFFFGG 415 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 415 (466)
++.+..++..++.+.+.+...... ..+..|.+|++.+++++|+.+....++..++|.+.|.+.+..+ +...+...+
T Consensus 331 --~~~~~~~i~~~~~G~~~g~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~ 407 (455)
T TIGR00892 331 --GDYTGLVIYCIFFGLSFGSVGALL-FEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASG 407 (455)
T ss_pred --chHHHHHHHHHHHHHHhchHHHHH-HHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhh
Confidence 223334444555555554443433 5555789999999999999999999999999999999998875 544444444
Q ss_pred HHHHHH
Q 048207 416 WLTVMT 421 (466)
Q Consensus 416 ~~~~~~ 421 (466)
++.+++
T Consensus 408 ~~~li~ 413 (455)
T TIGR00892 408 SIVVSA 413 (455)
T ss_pred HHHHHH
Confidence 433333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=252.74 Aligned_cols=363 Identities=16% Similarity=0.178 Sum_probs=268.5
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc--chhHHHHHHHHhhhhhhh
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF--NIYMLIFGRLLLGVGIDF 104 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 104 (466)
+.++++|+.|.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 678999999999999999999999999999999999999999999999999999998874 556889999999999999
Q ss_pred hhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc-ccCChhh
Q 048207 105 GNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF-LPETPNS 183 (466)
Q Consensus 105 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~es~~~ 183 (466)
.+|....+.+.|.|++||++..++..++..+|.+++.++++.+.+. ..||+.+|++.++.+++..+++++ ..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999999999999999999998876 257999999999999887766544 6777742
Q ss_pred hhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhcccc---CCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHh
Q 048207 184 IIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKN---INHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISF 260 (466)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
++. .. ++|.+.+++.+.+++. .+.|+++++++ +.+++..+..+....+++.+..
T Consensus 223 ---h~~-is---------------~~El~~I~~~k~~~~~~~~~~vP~~~i~ts----~~vwai~~~~f~~~~~~~~l~~ 279 (466)
T KOG2532|consen 223 ---HPN-IS---------------EKELKYIEKGKSEAHVKKKPPVPYKAILTS----PPVWAIWISAFGGNWGFYLLLT 279 (466)
T ss_pred ---CCC-CC---------------HHHHHHHHhcccccccCCCCCCCHHHHHcC----HHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11 1122222222222221 35678887765 5667777777888888899999
Q ss_pred hHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCe--------e-eehhhhHHHHHHHHHHHHHHHhhc
Q 048207 261 YAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRK--------V-LFLLGGIQMLVSQVMIGSIMAAQL 330 (466)
Q Consensus 261 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~ 330 (466)
|.|.|+++ ++++..+.+ +..++..+...+..+++|.++||+.+| | .-.++....+++++.+.+.
T Consensus 280 y~PtY~~~VL~f~v~~~G-~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~----- 353 (466)
T KOG2532|consen 280 YLPTYLKEVLGFDVRETG-FLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT----- 353 (466)
T ss_pred HhhHHHHHHhCCChhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec-----
Confidence 99999975 799998888 999999999999999999999998663 1 1223333334444443333
Q ss_pred CCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhh---ccc
Q 048207 331 GDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCH---FKA 407 (466)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~ 407 (466)
+....+..++++.+.....+...... +.-..+. .+++.+..+|+.+....+.+.++|.+.+.+... ..|
T Consensus 354 ------~~~~~~~a~~~l~~~~~~~g~~~~Gf-~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW 425 (466)
T KOG2532|consen 354 ------SDEHRLLAVILLTIAIGLSGFNISGF-YKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEW 425 (466)
T ss_pred ------CCCcchHHHHHHHHHHHHcccchhhh-Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHH
Confidence 21222233333333222222222222 2221233 447889999999999999999999999999842 235
Q ss_pred ceehhhHHHHHHHHHhhheec
Q 048207 408 GVFFFFGGWLTVMTTFVHFFL 428 (466)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~ 428 (466)
...+...+...+++.+.+.+.
T Consensus 426 ~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 426 RIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHhchheeEe
Confidence 555555555555554444444
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=251.51 Aligned_cols=350 Identities=13% Similarity=0.092 Sum_probs=248.8
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+++|+|+.+.++..+.+.+++.+++++.|+++||+|||+++.++..+..++.+++.++++++.+++.|+++|++.
T Consensus 36 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 115 (406)
T PRK15402 36 MLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGL 115 (406)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHh
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhcccCCh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLFLPETP 181 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es~ 181 (466)
+...+...+++.|++|+++|.+..++......+|..++|.+++.+.+. .+||+.|++.++..++..+. .+..||++
T Consensus 116 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 116 CFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV---LPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred hhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 988899999999999999999999999888889999999998887764 45999999888777665543 34467764
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
+. +++ ..+ .++. ..++++.++++.. +...+..............+
T Consensus 193 ~~---~~~-~~~-----------------~~~~----------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 237 (406)
T PRK15402 193 GR---VGE-KLS-----------------LKEL----------GRDYKLVLKNRRF----VAGALALGLVSLPLLAWIAL 237 (406)
T ss_pred cc---ccc-ccc-----------------HHHH----------HHHHHHHHcCcHH----HHHHHHHHHHHHHHHHHHHH
Confidence 31 000 000 0000 1122333333222 11222111111122334445
Q ss_pred HHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 262 APVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 262 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
.|.++ ++.+.++.+.+ .......++.+++.++.+++.||+++|+.+.++.....++..++...... ....
T Consensus 238 ~p~~~~~~~g~~~~~~g-~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~ 308 (406)
T PRK15402 238 SPVILISGEQLSSYEYG-LLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--------SSHA 308 (406)
T ss_pred hHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--------cccc
Confidence 67665 45788877766 66666677888999999999999999998888777666666655543210 1122
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHH
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (466)
.+.......+.+.+.+....+. .... ...+++.++++.++.+....++..+++.+.+.+.+..+........+++.++
T Consensus 309 ~~~~~~~~~~~g~g~~~~~~~~-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 386 (406)
T PRK15402 309 YLWLTAGLSLYAFGIGLANAGL-YRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLL 386 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhH-HHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHH
Confidence 3333444555555555444333 2232 2334488999999999999999999999999988877754444444433333
Q ss_pred H
Q 048207 421 T 421 (466)
Q Consensus 421 ~ 421 (466)
.
T Consensus 387 ~ 387 (406)
T PRK15402 387 W 387 (406)
T ss_pred H
Confidence 3
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=245.53 Aligned_cols=347 Identities=14% Similarity=0.146 Sum_probs=242.1
Q ss_pred cccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHH-HHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhh
Q 048207 25 KVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSIL-IGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGID 103 (466)
Q Consensus 25 ~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g 103 (466)
.+++++|.|..+.|++.+.+.++..+.+++.|+++||+||||.++ .+..+..++.++++++++++.+++.|+++|.+.+
T Consensus 23 ~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 102 (375)
T TIGR00899 23 FLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAS 102 (375)
T ss_pred HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhh
Confidence 367899999999999999999999999999999999999988765 4666667788888999999999999999998888
Q ss_pred hhhhhhhHHHHhcCCCcccCch--hhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhcccCC
Q 048207 104 FGNQSVPLYLSEMAPPKCRGAF--NIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLFLPET 180 (466)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es 180 (466)
...|...++..|+.|+++|++. .+....+.++|.++++.+++.+.+. .+||+.|++.+++.++..+. .+++||+
T Consensus 103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T TIGR00899 103 TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---FGFTVMFLTAALAFVLCGVLVWLFLPSY 179 (375)
T ss_pred hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8888888899999887777654 5778888899999999999888764 46999999998876665544 4457887
Q ss_pred hhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHh
Q 048207 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISF 260 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
|+...++++ +.+.++.++++..+.......+... .......
T Consensus 180 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 220 (375)
T TIGR00899 180 PRGAPGALT-----------------------------------RLEVRGLLASRDTRLLFVACTLMWG----CNILYII 220 (375)
T ss_pred ccCcccccC-----------------------------------cchhhhhhcCcchHHHHHHHHHHHH----HHHHHHh
Confidence 642100000 0011112222222222222211111 1233344
Q ss_pred hHHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccch
Q 048207 261 YAPVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 261 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
+.|.++ ++.+.++.+.+ ..........+++.++.+++.||++||+.+..+.....+....+... +
T Consensus 221 ~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~ 286 (375)
T TIGR00899 221 NMPLLIIHELGLPDKLAG-LMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------------N 286 (375)
T ss_pred hhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------------H
Confidence 556665 55788877776 66666666778888999999999999998776655544433332221 2
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHH
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTV 419 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (466)
+.+.......+.+.+.+... +....+..|..|+ ++++++++.+...+++..++|.+.+.+.+..++...+...+++.+
T Consensus 287 ~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~ 364 (375)
T TIGR00899 287 SLWALLMLQLLNAIFIGILA-GIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLI 364 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 23333333344444444333 3334566788875 567999999999999999999999999998887766666666666
Q ss_pred HHHhhheecc
Q 048207 420 MTTFVHFFLP 429 (466)
Q Consensus 420 ~~~~~~~~~~ 429 (466)
.+.+...+++
T Consensus 365 ~~~~~~~~~~ 374 (375)
T TIGR00899 365 VALFCLLLIK 374 (375)
T ss_pred HHHHHHheec
Confidence 6666555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-31 Score=244.08 Aligned_cols=352 Identities=15% Similarity=0.072 Sum_probs=243.0
Q ss_pred ccccc-cccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc-----cchhHHHHHHHH
Q 048207 24 TKVSD-YCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA-----FNIYMLIFGRLL 97 (466)
Q Consensus 24 ~~i~~-~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l 97 (466)
+.+.+ ++|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.++..+.+++.+++ ++++.+++.|++
T Consensus 58 ~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l 137 (462)
T PRK15034 58 VNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALL 137 (462)
T ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHH
Confidence 44444 899999999999999999999999999999999999999999999999999999987 899999999999
Q ss_pred hhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhc-----cc----------CCCcchHHHHHh
Q 048207 98 LGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQ-----KI----------KGGWGWKISLAM 162 (466)
Q Consensus 98 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~-----~~----------~~~~~wr~~f~~ 162 (466)
.|++ +..++.....+++|+|+++||+++++.....++|..+++++...+. .. .+..+||..+++
T Consensus 138 ~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~ 216 (462)
T PRK15034 138 CGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWI 216 (462)
T ss_pred HHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHH
Confidence 9998 7788999999999999999999999997666677665555443322 10 112458888888
Q ss_pred hhHHHHHHHHHhhc-ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHH
Q 048207 163 AAAPASILTIGSLF-LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLV 241 (466)
Q Consensus 163 ~~~~~~~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (466)
..++.++..+..++ .++.|. +++ ......+.+|+ +..
T Consensus 217 ~~~~~iv~~i~~~~~~~~~~~----~~~----------------------------------~~~~~~~vlk~----~~~ 254 (462)
T PRK15034 217 WVPLLAIATIAAWSGMNDIAS----SRA----------------------------------SIADQLPVLQR----LHL 254 (462)
T ss_pred HHHHHHHHHHHHHHhCCCccc----ccc----------------------------------CHHHHHHHhCC----Cch
Confidence 77777666555444 333221 000 00112223333 233
Q ss_pred HHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHH
Q 048207 242 MAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVM 321 (466)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 321 (466)
+.+.+.+++.+..+..+..+.|.+.++ .++..... ....+..+...+.++++|+++||+|+++++.++.+.+.++...
T Consensus 255 Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l-~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~ 332 (462)
T PRK15034 255 WLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNIL-RLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSAL 332 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHH-HHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 444444555666677788889988765 33333222 3344556778899999999999999999999888777766544
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccc---------------------cchhhhh
Q 048207 322 IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPL---------------------EIRSAGQ 380 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~r~~~~ 380 (466)
+..... .. +....+.....+.....+.+.+..+. +-++.+.+|+ ++.|.+.
T Consensus 333 ~~l~lp----~~---~~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 404 (462)
T PRK15034 333 LFLTLP----GT---GSGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAAL 404 (462)
T ss_pred HHHHhc----cc---cccHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHH
Confidence 333320 00 01223333333333334445555555 4344566764 1567889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-ce-ehhhHHHHHHHHHhhheec
Q 048207 381 SITVAVGLLFTSLVAQTFLAMLCHFKA-GV-FFFFGGWLTVMTTFVHFFL 428 (466)
Q Consensus 381 g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 428 (466)
|+....+.+|+++.|.+++...+..|. .. ++.+.+...++..+.+.+.
T Consensus 405 G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 405 GFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888773 32 3444444444445544443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=251.43 Aligned_cols=327 Identities=21% Similarity=0.314 Sum_probs=240.3
Q ss_pred cccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhh
Q 048207 25 KVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDF 104 (466)
Q Consensus 25 ~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~ 104 (466)
.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+++|++.+++.|++.|++.+.
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 101 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGF 101 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccc
Confidence 67899999999999999999999999999999999999999999999999999977777778888999999999999999
Q ss_pred hhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhcccCChhh
Q 048207 105 GNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLFLPETPNS 183 (466)
Q Consensus 105 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es~~~ 183 (466)
..+...+++.|++|+++|++++++...+..+|.++++.+++.+.+. .+||+.|++.++..++..++ ..+++++|+.
T Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~ 178 (352)
T PF07690_consen 102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY---FGWRWAFLISAILSLIAAILFILFLPEPPPP 178 (352)
T ss_dssp HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---CHHCCHHHHHHHHHHHHHHHHHCCC---STT
T ss_pred ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc---cccccccccccchhhhhhhhHhhhhhhcccc
Confidence 9999999999999999999999999999999999999999988754 46999999999888877654 3445544432
Q ss_pred hhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCc-chHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhH
Q 048207 184 IIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINH-PFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYA 262 (466)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (466)
...+++++++ ++.++... .++..++++..+ ......+...........+.
T Consensus 179 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 229 (352)
T PF07690_consen 179 RERESPKESE-------------------------SKKPKPLKPGFKSLFKNPVLW----ILLIAFFLFFFVFSGFSFFL 229 (352)
T ss_dssp TT--SSTTTT---------------------------HHHCCCH-CTHHHHHHCCH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccc-------------------------cccccccccccccccccchhh----hhhhhhhHHHHHHHHhhccc
Confidence 1111110000 00000011 133343333222 12222222222345577888
Q ss_pred HHH-HhhhCCC-cchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 263 PVL-FRTIKLS-ENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 263 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
|.+ .++.+.+ ..+.+ .......+..+++.++.+++.||+++|+..........+..+.+..... .++
T Consensus 230 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 298 (352)
T PF07690_consen 230 PLYLQEVLGFSGPSQAG-LLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF----------SSS 298 (352)
T ss_dssp HHHCCHHHHCCTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH----------HCH
T ss_pred chhhhhccCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH----------hhh
Confidence 887 5678888 56666 7788888999999999999999999987777666666655555443321 122
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHH
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVA 395 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~ 395 (466)
.........+.+.+.+...... ..+..|..|++.++++.|+.+...++++.++|
T Consensus 299 ~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 299 PVWLIIALFLIGFGFGIVFPIL-FSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHH-HHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3344445555555555544444 66668999999999999999999999998886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-31 Score=247.31 Aligned_cols=331 Identities=15% Similarity=0.099 Sum_probs=241.4
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+++++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.+++.++++++.+++.|++.|++.
T Consensus 28 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 107 (385)
T TIGR00710 28 FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGA 107 (385)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcch
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhcccCCh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLFLPETP 181 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es~ 181 (466)
+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+. .+||+.|++.++..++..+. .++.||++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 108 SAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LSWHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999887764 45999999888776665444 44567654
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
+. ++ .++.+ +. ....++.++++..+... +..............+
T Consensus 185 ~~----~~-~~~~~-------------~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 228 (385)
T TIGR00710 185 PY----EA-RIQIS-------------TY--------------FETFLLLLKSKMFWGYA----LIYGASFGGFFAFFSG 228 (385)
T ss_pred CC----cc-cCCHH-------------HH--------------HHHHHHHHcCchhHHHH----HHHHHHHHHHHHHHHc
Confidence 21 00 00000 00 01122333332222211 1122222233445566
Q ss_pred HHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 262 APVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 262 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
.|.+++ +.+.++.+.+ .......++.+++.++.+++.||+++|+.+..+..+..++..++...... ....
T Consensus 229 ~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 299 (385)
T TIGR00710 229 APFVYIDIMGVSPSVFG-LLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL--------GLGS 299 (385)
T ss_pred ChHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccch
Confidence 677665 6788887777 77888889999999999999999999998887776666665555443210 0011
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLC 403 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
.........+.+.+.+...... .....|..| +.++++.++.+.....++.+.+++.+.+.+
T Consensus 300 ~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 300 WAMIIGPMMFVGIGNSMISSIA-MAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2222333344444444433333 445467776 678999999999988888888888774433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-31 Score=252.40 Aligned_cols=379 Identities=15% Similarity=0.038 Sum_probs=242.9
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc----cchhHHHHHHHHh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA----FNIYMLIFGRLLL 98 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~ 98 (466)
.|.+++ +|+|+++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++. ++++.+.+.|++.
T Consensus 50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 128 (438)
T TIGR00712 50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLN 128 (438)
T ss_pred hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 466665 59999999999999999999999999999999999999999999999998887764 4677888999999
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHH-HHhhcc
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILT-IGSLFL 177 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~ 177 (466)
|++.+..++.....+.|++|+++|++++++.+.+..+|..+++.+.+..... ..+||..|++.++++++.. +..+++
T Consensus 129 g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~w~~~f~~~~~~~~i~~~~~~~~~ 206 (438)
T TIGR00712 129 GWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--FNDWHAALYFPAICAIIVALFAFAMM 206 (438)
T ss_pred HHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998999999999999999999999999999998888775543321 1469999999888776654 455567
Q ss_pred cCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhh-hhhhhhHHHHHHHHHHHHhcccch
Q 048207 178 PETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKII-QRKYRPQLVMAILIPFFQQVTGVN 256 (466)
Q Consensus 178 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 256 (466)
||+|+....+ + .++. +++.. .... +++++ +.+.++.+ +...+++.++...+..+......+
T Consensus 207 ~~~~~~~~~~-~-~~~~-------~~~~~--~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (438)
T TIGR00712 207 RDTPQSCGLP-P-IEEY-------RNDYP--DDYN------EKAEQ-ELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRY 268 (438)
T ss_pred cCCHHhcCCC-C-chhc-------ccccc--cccc------ccccc-ccchHHHHHHHHccCchHHHHHHHHHHHHHHHH
Confidence 8877531100 0 0000 00000 0000 00000 00111111 111122223223233233333345
Q ss_pred hHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 048207 257 IISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG 335 (466)
Q Consensus 257 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
....|.|.++++ .|++...++ ....+..+.++++.++.+++.||+++++....+.....+...........
T Consensus 269 ~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 340 (438)
T TIGR00712 269 GVLDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMN------- 340 (438)
T ss_pred HHHHhHHHHHHHccCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhc-------
Confidence 667788999876 588887777 77788888999999999999999965443333332222221111111100
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHH-HHHHHHHHHHHhhcccceehhh-
Q 048207 336 FSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFT-SLVAQTFLAMLCHFKAGVFFFF- 413 (466)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 413 (466)
+....+......+..+.+. .+..........|.+|++.|+++.|+.+..+++++ .++|.+.|.+.++.++...+..
T Consensus 341 -~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~ 418 (438)
T TIGR00712 341 -PAGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM 418 (438)
T ss_pred -CCCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHH
Confidence 1111222222222222211 11111112345689999999999999999988875 5789999999998886554443
Q ss_pred HHHHHHHHHhhheecccCC
Q 048207 414 GGWLTVMTTFVHFFLPETK 432 (466)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~ 432 (466)
.+..++..+......+|+|
T Consensus 419 ~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 419 IGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3334444444455555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=244.64 Aligned_cols=341 Identities=13% Similarity=0.080 Sum_probs=238.0
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+++|.|..+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+++++++|++.++++|+++|++.
T Consensus 29 lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 108 (381)
T PRK03633 29 VPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGC 108 (381)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 57778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPN 182 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~ 182 (466)
+...+...+.+.+..++++|++++++...+.++|..+|+.+++.+.+... |+..+....+...+..+.....+|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (381)
T PRK03633 109 AMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM---SVLPWVTGLVLAAILPLLFTRILNQQA 185 (381)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---chHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 99989888888899999999999999999999999999999988765321 222222211111111111111222110
Q ss_pred hhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhH
Q 048207 183 SIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYA 262 (466)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (466)
++ +.+.+.++.++++..+........ ....+.....+.
T Consensus 186 -----~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l 223 (381)
T PRK03633 186 -----EN---------------------------------HDSTSIWPMLKLRQARLGVNGCII----SGIVLGSLYGLM 223 (381)
T ss_pred -----CC---------------------------------CCCCCHHHHHHhcchHHHHHHHHH----HHHHHHHHHHHH
Confidence 00 001122333333322211111111 111233445678
Q ss_pred HHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhH
Q 048207 263 PVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAY 342 (466)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (466)
|.+.++.+.+....+ .......++.+++++..+++.||+++|+.+..+.....++...+. .. . .
T Consensus 224 p~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~------------~-~- 287 (381)
T PRK03633 224 PLYLNHQGMSDASIG-FWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQ------------A-A- 287 (381)
T ss_pred HHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hh------------H-H-
Confidence 888888888877777 677788889999999999999999999888777666665544332 10 1 1
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHHHH
Q 048207 343 LILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMTT 422 (466)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (466)
......+.+.+.. ...|.......|..|++.++...+..+...++|..++|.+.|.+.|+.++...+...+.+.++..
T Consensus 288 -~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 288 -MAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred -HHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 1112222222222 22344455557888888888888888888899999999999999999886655555555555444
Q ss_pred hhhe
Q 048207 423 FVHF 426 (466)
Q Consensus 423 ~~~~ 426 (466)
+..+
T Consensus 366 ~~~~ 369 (381)
T PRK03633 366 LMLL 369 (381)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=244.87 Aligned_cols=338 Identities=12% Similarity=0.057 Sum_probs=231.7
Q ss_pred ccCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhh
Q 048207 20 MREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLG 99 (466)
Q Consensus 20 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 99 (466)
....|.+.+++|.+..+.++..+++.++++++++++|+++||+|||+++..+..+++++.+++++++|++.++++|+++|
T Consensus 36 ~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G 115 (413)
T PRK15403 36 QPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQG 115 (413)
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhccc
Q 048207 100 VGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLFLP 178 (466)
Q Consensus 100 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~ 178 (466)
++.+...+....++.|++|+++|++++++......+|..+||.+++.+.+. .+||+.|++.++..++..+. .+++|
T Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---~gw~~~f~~~~~~~~i~~~~~~~~lp 192 (413)
T PRK15403 116 TSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---VHWKVLFAIIAVMGLIAFVGLLLAMP 192 (413)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999877777788899999999999999999999999999999999887764 46999999988877776544 45578
Q ss_pred CChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhH
Q 048207 179 ETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNII 258 (466)
Q Consensus 179 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (466)
|+++. ++++.+. +. ..+++++.++++ .++...+...........+
T Consensus 193 ~~~~~---~~~~~~~-~~---------------------------~~~~~~~ll~~~----~~~~~~l~~~~~~~~~~~~ 237 (413)
T PRK15403 193 ETVKR---GAVPFSA-KS---------------------------VLRDFRNVFRNR----LFLTGAATLSLSYIPMMSW 237 (413)
T ss_pred CCccc---cCCCCCh-HH---------------------------HHHHHHHHHcCH----HHHHHHHHHHHHHHHHHHH
Confidence 87531 1010000 00 011233344332 2222333333333334556
Q ss_pred HhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCcc
Q 048207 259 SFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFS 337 (466)
Q Consensus 259 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
..+.|.++++ .|.+..+.+ +.......+.+++..+.+++.++..+++.......+..++..++....... +
T Consensus 238 ~~~~P~~l~~~~g~s~~~~g-l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~-------~ 309 (413)
T PRK15403 238 VAVSPVILIDAGGMTTSQFA-WTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW-------P 309 (413)
T ss_pred HHhChHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc-------c
Confidence 6677888765 478877777 666667777788777777766554444433222222233332222211000 1
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048207 338 IGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK 406 (466)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
+..+......++++.+.+...+.... . +..-....+|++.++.+.....+...++...+++.+...
T Consensus 310 -~~~~~~~~~~~l~~~G~~~~~p~~~~-~-al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~ 375 (413)
T PRK15403 310 -HVWLWSVLGTSLYAFGIGLIFPTLFR-F-TLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGG 375 (413)
T ss_pred -ccHHHHHHHHHHHHHHHHHHhHHHHH-H-HhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11222334445555555544444321 1 111122347999999999998888888888888766643
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.9e-31 Score=252.98 Aligned_cols=362 Identities=13% Similarity=0.124 Sum_probs=253.1
Q ss_pred CCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 22 EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 22 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
..|.+.+++|.|+.+.+++.+.+.++..++.+++|+++||+|||+++..+..+.+++.++++++++++.+++.|+++|++
T Consensus 32 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~ 111 (471)
T PRK10504 32 ALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVG 111 (471)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhh-cccCC
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSL-FLPET 180 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~es 180 (466)
.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+.+. .+||+.|++......+..+... ..|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 112 GAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY---ASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999988775 4599999998776665544433 34544
Q ss_pred hhhhhhcCCcHHHHHHHHH---------HHhCccc---hHHHHHH-----------HHHHhhccccCCcchHHhhhhhhh
Q 048207 181 PNSIIQRTNDHQKAEKMLQ---------RVHGTAD---VQAELED-----------LIRASSDSKNINHPFKKIIQRKYR 237 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 237 (466)
+. .+.+ .+....... ...+.+. ....... ...++++.++...+. ++++++..
T Consensus 189 ~~---~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~ 263 (471)
T PRK10504 189 TM---QTRR-FDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTF 263 (471)
T ss_pred cc---cCCC-CChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccch
Confidence 31 1111 111111000 0000000 0000000 000011111111122 33444332
Q ss_pred hHHHHHHHHHHHHhcccchhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHH
Q 048207 238 PQLVMAILIPFFQQVTGVNIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQML 316 (466)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 316 (466)
.. .....+.....+.....+.|+|++. .|.++...+ +......++.+++.++.+++.||++||+.+..+..+..
T Consensus 264 ~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~ 338 (471)
T PRK10504 264 SL----GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG-LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLA 338 (471)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 22 2222222223345556677888874 788877777 77788888888888999999999999999888877676
Q ss_pred HHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHH
Q 048207 317 VSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQ 396 (466)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~ 396 (466)
+...++.... ...+.+.......+.+.+.+....+. .....+..|++.++.++|+.++...++..+++.
T Consensus 339 ~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~ 407 (471)
T PRK10504 339 LVSLLFMLVA----------LLGWYYLLPFVLFLQGMVNSTRFSSM-NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVT 407 (471)
T ss_pred HHHHHHHhcc----------ccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHH
Confidence 6655544321 11112222223333334444444444 344568889999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 048207 397 TFLAMLCHFKA 407 (466)
Q Consensus 397 ~~~~~~~~~~~ 407 (466)
+.+.+.+..++
T Consensus 408 i~g~ll~~~g~ 418 (471)
T PRK10504 408 IAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHhhh
Confidence 99999887664
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=245.74 Aligned_cols=330 Identities=16% Similarity=0.076 Sum_probs=239.1
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+++++|+|+++.+++.+++.++..++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|+++|++.
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 108 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGV 108 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPN 182 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~ 182 (466)
+...+...+++.|++|++++++..+.......+|..++|.+++.+.+. .+||+.|++.++..++..+..++++|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (401)
T PRK11043 109 CSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH---FGWQAIFATLFAITLLLILPTLRLKPSKK 185 (401)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 888888889999999999999999999888999999999999888764 45999999888877776665555655432
Q ss_pred hhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhH
Q 048207 183 SIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYA 262 (466)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (466)
. + + .++ .+.++++.++++..+.......+ ....+.....+.
T Consensus 186 ~---~-~-~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 226 (401)
T PRK11043 186 A---R-K-QSQ------------------------------DALTFKQLLKSKTYLGNVLIFAA----CSAAFFAWLTGS 226 (401)
T ss_pred c---c-c-cch------------------------------HHHHHHHHHcChhHHHHHHHHHH----HHHHHHHHHHHh
Confidence 0 0 0 000 01123333333222211111111 112234455677
Q ss_pred HHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhH
Q 048207 263 PVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAY 342 (466)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (466)
|.+.++.|++....+ .......++.+++.++.+++.||+++|+..........++.+.+...... ..+..+
T Consensus 227 p~~~~~~g~s~~~~g-~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 297 (401)
T PRK11043 227 PFILEQMGYSPADIG-LSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL--------SHPSLV 297 (401)
T ss_pred HHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCcHH
Confidence 888888888887777 66677778888999999999999999887655555444444333222110 111222
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048207 343 LILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF 405 (466)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
.......+.+.+.+..++.. .....+..| +.++++.|+.+..+..++..++.+.+.+.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 358 (401)
T PRK11043 298 PLLIPFCVMAAANGAIYPIV-VAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTP 358 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 23333344444444444333 333345566 57999999999999999999999999887754
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=250.04 Aligned_cols=276 Identities=18% Similarity=0.204 Sum_probs=218.6
Q ss_pred HHHhhcccccccccCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccc
Q 048207 8 FLKKFFPEVNRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFN 87 (466)
Q Consensus 8 f~~~f~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~ 87 (466)
+...|.|+.+...+....+.+|.++..++.+.+.++++++++++.++++.+.||++-.+.+....+++++..++....+|
T Consensus 54 y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s 133 (495)
T KOG2533|consen 54 YFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS 133 (495)
T ss_pred HHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567778888887778888999999999999999999999999999999999999999999999999999988888999
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC---CCcchHHHHHhhh
Q 048207 88 IYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK---GGWGWKISLAMAA 164 (466)
Q Consensus 88 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~wr~~f~~~~ 164 (466)
++.+++.|++.|+.+++.+|....+++.|+.+++|++.++++.++.++|.++|.+++..+.++. ...||||.|++.+
T Consensus 134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G 213 (495)
T KOG2533|consen 134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEG 213 (495)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHH
Confidence 9999999999999999999999999999999999999999999999999999999988864422 2368999999999
Q ss_pred HHHHHHH-HHhhcccCChh--hhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHH
Q 048207 165 APASILT-IGSLFLPETPN--SIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLV 241 (466)
Q Consensus 165 ~~~~~~~-~~~~~~~es~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (466)
+++++.. +..+++|+.|. +...++ |.+ ...++.++...+...++.+.++. ++..+.+.+
T Consensus 214 ~i~~~~gi~~f~~lp~~P~~~~fl~~~----ek~-------------~~~~~~~~~~~~~~~~~~~~~~~-~~a~~dp~v 275 (495)
T KOG2533|consen 214 VITLVLGIVVFFFLPDNPSKAWFLTDE----EKE-------------LVVERLRESPSGGIENKFKWKGF-KEALKDPGV 275 (495)
T ss_pred HHHHHHHheEEEEecCChhhccccchH----HHH-------------HHHHHHHhccCCCcccccCHHHH-HHHHhchhH
Confidence 8888765 55566899985 211111 100 00111111111111111122222 233444556
Q ss_pred HHHHHHHHHhcccchhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 048207 242 MAILIPFFQQVTGVNIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKL 302 (466)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 302 (466)
+...+..++.....+.+.+|+|.++++ .+++..++. .+.++..++++++.+++|+++||.
T Consensus 276 w~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~-~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 276 WPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQAN-LLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhc-cccchHHhhhHHHHHHHHHHHHHH
Confidence 666666777777788899999999988 568888888 899999999999999999999995
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=258.68 Aligned_cols=362 Identities=14% Similarity=0.090 Sum_probs=257.1
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+++|.|..+.+++.+.+.++..++.++.|+++||+|||+++..+..+..++.+++++++|++.+++.|+++|++.
T Consensus 25 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~ 104 (485)
T TIGR00711 25 IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGG 104 (485)
T ss_pred HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhh
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhcccCCh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLFLPETP 181 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es~ 181 (466)
+...+...+++.|++|+++|+++++++..+..+|..++|.+++.+.+. ++||+.|++.++++++..+. .+++||++
T Consensus 105 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 105 GPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN---YHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC---cCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 999999999999999999999999999999999999999999988764 56999999988777665444 34466644
Q ss_pred hhhhhcCCcHHHHHHH------------HHHHhCcc--chHHHHHHH---------HHHhhccccCCcchHHhhhhhhhh
Q 048207 182 NSIIQRTNDHQKAEKM------------LQRVHGTA--DVQAELEDL---------IRASSDSKNINHPFKKIIQRKYRP 238 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~------------~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 238 (466)
+. +.++.+..... ..+-...+ +.+...... ....+.+++.+....+.++++...
T Consensus 182 ~~---~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (485)
T TIGR00711 182 PA---ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFT 258 (485)
T ss_pred cc---ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChH
Confidence 31 11111111100 00000000 000000000 000001111111112334333222
Q ss_pred HHHHHHHHHHHHhcccchhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHH
Q 048207 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLV 317 (466)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 317 (466)
.. .+..+.....++....+.|.++++ .|.++.+.+ .......++.+++.++.+++.||++||+.+..+..+..+
T Consensus 259 ~~----~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 259 IG----CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAG-LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAV 333 (485)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 22 222222223345566778888765 688888887 888888999999999999999999999988877776666
Q ss_pred HHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Q 048207 318 SQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQT 397 (466)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 397 (466)
+..++..... +....+.......+.+.+.+....+..... .+..|++.++++.|+.+....+|+.+++.+
T Consensus 334 ~~~~~~~~~~---------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i 403 (485)
T TIGR00711 334 GFYWRAFTFT---------PDTPFLAIALPQFIRGFGMGCFFMPLTTIA-LSGLPPHKIARGSSLSNFTRQLGGSIGTAL 403 (485)
T ss_pred HHHHHhccCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6655442110 112223333444555555555555553333 577899999999999999999999999999
Q ss_pred HHHHHhhc
Q 048207 398 FLAMLCHF 405 (466)
Q Consensus 398 ~~~~~~~~ 405 (466)
.+.+.++.
T Consensus 404 ~g~~~~~~ 411 (485)
T TIGR00711 404 ITTILTNR 411 (485)
T ss_pred HHHHHHHH
Confidence 99988754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=243.75 Aligned_cols=339 Identities=21% Similarity=0.284 Sum_probs=234.6
Q ss_pred CCcchhHHHHHh-----hhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchh--------HHHHHHHHh
Q 048207 32 FDSQLLTSLTSS-----LYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIY--------MLIFGRLLL 98 (466)
Q Consensus 32 ~s~~~~g~~~s~-----~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~ 98 (466)
.++.+.+.+.+. ..++..+++++.|+++||+|||+++..+.++..++.++++++++++ .+++.|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 456666665543 3344457899999999999999999999999999999999999875 488899999
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC-----CCcchHHHHHhhhHHHHHHHHH
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK-----GGWGWKISLAMAAAPASILTIG 173 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~ 173 (466)
|++.+...+...+++.|++|+++|++..++...+..+|.++++.++..+.... ..++||+.|++.+++.++....
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876654311 2367999999888777666655
Q ss_pred hhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcc
Q 048207 174 SLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVT 253 (466)
Q Consensus 174 ~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (466)
....||+|++..+++ ++++.+.+.++.++++. ++... .....+....
T Consensus 187 ~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~ 233 (394)
T TIGR00883 187 RRNLEETPVFEKAQE-------------------------------KHKKKRGPIRETLTKHR-KPFLL-GLGLVIATTT 233 (394)
T ss_pred HHhcCCChhHHHHHh-------------------------------ccccccCCHHHHHHhch-HHHHH-HHHHHHHHHH
Confidence 556677653211000 00111223444443322 11222 2222333333
Q ss_pred cchhHHhhHHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHH-HHHHHHHHhhcC
Q 048207 254 GVNIISFYAPVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQ-VMIGSIMAAQLG 331 (466)
Q Consensus 254 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 331 (466)
.......+.|.+. ++.+.+....+ .......++.+++.++.+++.||++||+.+.....+..+.. ..+....
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~----- 307 (394)
T TIGR00883 234 TFYLITTYLPTYLTQTLGLSANSAL-LVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL----- 307 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 4556667788887 55778877777 77788888999999999999999999987765544443322 1221111
Q ss_pred CCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHH-HHHHHHHHHHHHHHHHHhhcc-cce
Q 048207 332 DHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVA-VGLLFTSLVAQTFLAMLCHFK-AGV 409 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ 409 (466)
.....+......++.+.+.+....+. ..+..|.+|++.|+++.++.+. ...++..++|.+.+.+.++.+ +..
T Consensus 308 -----~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~ 381 (394)
T TIGR00883 308 -----DSGSFTLFFFLVLGLALIGGMYTGPM-GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYA 381 (394)
T ss_pred -----cCCchHHHHHHHHHHHHHHHHHhhhH-HHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchh
Confidence 11223333344444444444444444 5666899999999999998554 456778899999999999887 444
Q ss_pred ehhhHH
Q 048207 410 FFFFGG 415 (466)
Q Consensus 410 ~~~~~~ 415 (466)
......
T Consensus 382 ~~~~~~ 387 (394)
T TIGR00883 382 IGYYLA 387 (394)
T ss_pred HHHHHH
Confidence 444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=241.79 Aligned_cols=353 Identities=15% Similarity=0.067 Sum_probs=235.7
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhh---h-ccchhHHHHHHHHhh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGG---S-AFNIYMLIFGRLLLG 99 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~-~~~~~~l~~~r~l~G 99 (466)
+.+.+|+|+|+.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+++. + .++++.+++.|+++|
T Consensus 37 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G 116 (402)
T TIGR00897 37 SPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRG 116 (402)
T ss_pred HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 344578999999999999999999999999999999999999999999999998877653 3 357888999999999
Q ss_pred hhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHH-HHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHH-HHhhcc
Q 048207 100 VGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGI-LSANLLNYGTQKIKGGWGWKISLAMAAAPASILT-IGSLFL 177 (466)
Q Consensus 100 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~ 177 (466)
++.+...+...+.+.+++|+++|++++++.+.+.++|. ++++.+++.+.+. .||+..++......++.. +..++.
T Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~ 193 (402)
T TIGR00897 117 LGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA---FGEMNTLWSALAFVLTGGVIALFSN 193 (402)
T ss_pred cchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99988888888889999999999999999999999996 5789888776653 456555444333322222 223334
Q ss_pred cCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchh
Q 048207 178 PETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNI 257 (466)
Q Consensus 178 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (466)
+|.++. ++++++++ .++ .+..+++.++++ .++...+..+......+.
T Consensus 194 ~~~~~~--~~~~~~~~-----------------~~~----------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 240 (402)
T TIGR00897 194 KDIFTP--QHMQTREK-----------------FSE----------LGKAATILFTNP----NVLLGGMVRIINTIGLFG 240 (402)
T ss_pred CCCCCc--ccccCCcc-----------------hhh----------HHHHHHHHHcCh----hHHHHHHHHHHHHHHHHH
Confidence 443210 00000000 000 001122333332 222222223333344566
Q ss_pred HHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeeh-hhhHHHHHHHHHHHHHHHhhcCCCCCc
Q 048207 258 ISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFL-LGGIQMLVSQVMIGSIMAAQLGDHGGF 336 (466)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
...+.|.+.++.|.+..+.+ .......++.+++.+..|+++||++||+.+. .+.+...++.+.+......
T Consensus 241 ~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~-------- 311 (402)
T TIGR00897 241 FAVFLPMFVAELGFSTSEWL-QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH-------- 311 (402)
T ss_pred HHHHHHHHHHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 77888999988899888877 7777888999999999999999999888654 2222233322222221100
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHH
Q 048207 337 SIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGW 416 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (466)
..+..+......++.+.+.+. ..+.. ....|..| ++|+++.|+.+....+++.++|.+.+.+.+..|+...+...+.
T Consensus 312 ~~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~ 388 (402)
T TIGR00897 312 FGHSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAA 388 (402)
T ss_pred cCCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 011223333344444444433 23332 33356655 6899999999999999999999999999999885555544444
Q ss_pred HHHHHHhh
Q 048207 417 LTVMTTFV 424 (466)
Q Consensus 417 ~~~~~~~~ 424 (466)
+.+++.+.
T Consensus 389 ~~~i~~~~ 396 (402)
T TIGR00897 389 LYVVSAFL 396 (402)
T ss_pred HHHHHHHH
Confidence 44444433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=238.33 Aligned_cols=327 Identities=24% Similarity=0.317 Sum_probs=266.2
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.++..+.++++.+++.|++.|++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 101 (352)
T cd06174 22 LPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGG 101 (352)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccc
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPN 182 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~ 182 (466)
+...+...+++.|++|+++|++.+++.+....+|..+++.+++.+.+.. +||+.+++.+++.++..+...+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---- 174 (352)
T cd06174 102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL---GWRWLFLILAILGLLLALLLLFLL---- 174 (352)
T ss_pred ccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999887754 499999998887776655544331
Q ss_pred hhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhH
Q 048207 183 SIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYA 262 (466)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (466)
+.++...+..+...........+.
T Consensus 175 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 198 (352)
T cd06174 175 --------------------------------------------------------RLLLLLALAFFLLSFGYYGLLTYL 198 (352)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 111222223333334456677788
Q ss_pred HHHHhhh-CCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCee-eehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 263 PVLFRTI-KLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKV-LFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 263 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
|.+.++. +.+..+.+ .......++.+++.++.+++.||++||+ .+..+..+..++...+... ++
T Consensus 199 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~ 264 (352)
T cd06174 199 PLYLQEVLGLSAAEAG-LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------------PS 264 (352)
T ss_pred HHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------------cc
Confidence 8887765 77777777 8888999999999999999999999999 8888877777777666543 22
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHH
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (466)
.+.......+.+.+.+...... ..+..|..|+++|++.+|+.+....++..+++.+.+.+.+..++...+...+...++
T Consensus 265 ~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i 343 (352)
T cd06174 265 LALLLVALLLLGFGLGFAFPAL-LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343 (352)
T ss_pred HHHHHHHHHHHHHHHhccchhH-HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence 3444555555666655544444 666689999999999999999999999999999999999888877666666666655
Q ss_pred HHhhhee
Q 048207 421 TTFVHFF 427 (466)
Q Consensus 421 ~~~~~~~ 427 (466)
+.+....
T Consensus 344 ~~i~~~~ 350 (352)
T cd06174 344 AALLLLL 350 (352)
T ss_pred HHHHhee
Confidence 5555443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=241.96 Aligned_cols=320 Identities=13% Similarity=0.109 Sum_probs=224.4
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+++|+|+.+.+++.+++.++..++++++|+++||+|||+++..+..+.+++.+++.++++++.+++.|++.|++.
T Consensus 14 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~ 93 (377)
T PRK11102 14 LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAA 93 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHH-HHhhcccCCh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILT-IGSLFLPETP 181 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~es~ 181 (466)
+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+. .+||+.|++.+++.++.. +..+++||++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 94 AAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---FSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999999999999999999999888764 459999998887766654 3445677754
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
+. +++++.+ .++. ..++++.++++. .. ...+..............+
T Consensus 171 ~~---~~~~~~~-------------~~~~--------------~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~ 216 (377)
T PRK11102 171 PK---ERRQPFH-------------LRTT--------------IRNFASLFRHKR---VL-GYMLASGFSFAGMFSFLTA 216 (377)
T ss_pred cc---cccCCCC-------------hHHH--------------HHHHHHHHcChH---HH-HHHHHHHHHHHHHHHHHHc
Confidence 21 0000000 0000 011223333321 11 1222222222233444445
Q ss_pred HHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 262 APVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 262 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
.|.++ ++.|+++.+.+ .......++.+++.++.+++.||+|+|+.+..+..+..+..+.+..... ....
T Consensus 217 ~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 286 (377)
T PRK11102 217 GPFVYIELNGVSPQNFG-YYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL---------LDLG 286 (377)
T ss_pred CHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH---------Hhhh
Confidence 55554 55788888777 7888889999999999999999999999888777654443333222210 0011
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHH
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFT 391 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~ 391 (466)
.+.......++....+...... ..+..|..| +.++++.++.+......+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~g~~~~~~~~~~~~~g 335 (377)
T PRK11102 287 FWALVVGVAAFVGCVSMISSNA-MAVILDEFP-HMAGTASSLAGTLRFGIG 335 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH-HHHHhcccc-ccchHHHHHHHHHHHHHH
Confidence 2222222223333332222222 334457666 788999998877654333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=239.96 Aligned_cols=347 Identities=12% Similarity=0.027 Sum_probs=240.6
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGID 103 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g 103 (466)
+.+.++++.+..+.+++.+.+.+++.++++++|+++||+|||++++++..+.++++++++++++. ++.|+++|++.+
T Consensus 27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a 103 (393)
T PRK11195 27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAA 103 (393)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999888777664 789999999999
Q ss_pred hhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChhh
Q 048207 104 FGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPNS 183 (466)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~ 183 (466)
...|...+++.|++|+++|++++++.+....+|.++||.+++.+.+. .|+..+.+.+...++..+..+.+||+|+.
T Consensus 104 ~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~~~ 179 (393)
T PRK11195 104 AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALIYLLAALFNLFIPRLGAR 179 (393)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 99999999999999999999999999999999999999999998873 37777777665555555555678887632
Q ss_pred hhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHH
Q 048207 184 IIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAP 263 (466)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (466)
...++. ++ .+. .++.. ...+..++++..+.......+... ......+..|
T Consensus 180 ~~~~~~--~~-~~~-------------~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 229 (393)
T PRK11195 180 RPGQSW--NP-IAL-------------LRDFF----------HACRVLWRDKLGRFSLAGTTLFWG----AGATLRFLVL 229 (393)
T ss_pred ccccCC--CH-HHH-------------HHHHH----------HHHHHHHhCchhHHHHHHHHHHHH----HHHHHHHHHH
Confidence 110000 00 000 00000 012233333333222222221111 1223333444
Q ss_pred HHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhH
Q 048207 264 VLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAY 342 (466)
Q Consensus 264 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (466)
.+.+ ..|.++.+.+ ......+++.+++++..+++.||.++++.+..+. +..+....+... ++.+
T Consensus 230 ~~~~~~lg~s~~~~G-~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-------------~~~~ 294 (393)
T PRK11195 230 AWAPVALGITLNQPA-YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-------------HSLL 294 (393)
T ss_pred HHHHHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-------------hHHH
Confidence 4554 4688888877 8888999999999999999999988887766653 222222222211 2233
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHHH
Q 048207 343 LILVLICVYKAGFGFSWGPLGWLVPSEIFPLEI-RSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMT 421 (466)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (466)
.......+.+.+.+....+.. ....+..|++. +|++.++.+...+++..++..+.+.+ +..+-.....+.+++.+..
T Consensus 295 ~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 372 (393)
T PRK11195 295 PAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVA 372 (393)
T ss_pred HHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHH
Confidence 334444455555555555553 44467666554 79999999999999999999888854 6777555555555555554
Q ss_pred Hhh
Q 048207 422 TFV 424 (466)
Q Consensus 422 ~~~ 424 (466)
...
T Consensus 373 ~~~ 375 (393)
T PRK11195 373 LAM 375 (393)
T ss_pred HHH
Confidence 443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=241.33 Aligned_cols=328 Identities=14% Similarity=0.127 Sum_probs=228.2
Q ss_pred CCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 22 EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 22 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
..|.+.+++|.|..+.++..+.+.++..+++++.|+++||+|||+++..+..+..++.+++.++++++.+++.|+++|++
T Consensus 25 ~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~ 104 (392)
T PRK10473 25 GLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIG 104 (392)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 36888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhcccCC
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLFLPET 180 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es 180 (466)
.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+.+. .+||+.|++.++..++..+. .+++||+
T Consensus 105 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~---~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 181 (392)
T PRK10473 105 AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK---FPWQSLFYTMAAMGILVLLLSLFILKET 181 (392)
T ss_pred hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999998877654 46999999988776665443 4556776
Q ss_pred hhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHh
Q 048207 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISF 260 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
++. ++++.++. .+..++.++++..........+... .......
T Consensus 182 ~~~---~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 224 (392)
T PRK10473 182 RPA---RAPAASSK------------------------------PRENSESLLNRFFLSRLVITTLSVT----VILTFVN 224 (392)
T ss_pred CCc---ccCCccch------------------------------HHHHHHHHhCHHHHHHHHHHHHHHH----HHHHHHH
Confidence 421 00000000 0011122222211111111111111 1223334
Q ss_pred hHHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccch
Q 048207 261 YAPVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 261 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
+.|.+. ++.|++....+ ......+++.+++.++.+++.||++||+.+..+..+..++.+.+.... .
T Consensus 225 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------------~ 291 (392)
T PRK10473 225 TSPVLLMEQMGFSRGEYA-IIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP------------S 291 (392)
T ss_pred hCHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH------------H
Confidence 456555 45688877766 777888899999999999999999999988888777766666555432 1
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccce
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGV 409 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
.+.......+...+.+..... ....+..|.+.|+ |.......++..+++.+.+.+.+..++..
T Consensus 292 -~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 292 -HAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred -HHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 112222223333333333222 1223444544443 33444455666677777777777776543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=241.12 Aligned_cols=324 Identities=13% Similarity=0.095 Sum_probs=231.4
Q ss_pred cccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhh
Q 048207 25 KVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDF 104 (466)
Q Consensus 25 ~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~ 104 (466)
.+++++|+|..+.|++.+...+...+.+++.|+++||+|||+++..+..+.+++.+++.++++++.+++.|+++|++.+.
T Consensus 36 ~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~ 115 (400)
T PRK11646 36 RFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTL 115 (400)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHH-HhhcccCChhh
Q 048207 105 GNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTI-GSLFLPETPNS 183 (466)
Q Consensus 105 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~es~~~ 183 (466)
..+...+++.|++|+++|++++++......+|..+||.+++.+.+ ++||+.|++.++..++..+ ..++.||.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~- 190 (400)
T PRK11646 116 FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLAAAFNAWLLPAYKL- 190 (400)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhCCcccc-
Confidence 889999999999999999999999999999999999999998873 5799999998877665443 3344554210
Q ss_pred hhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHH
Q 048207 184 IIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAP 263 (466)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (466)
+++ .++ .+.++++.++++....... ..+...........+.|
T Consensus 191 ---~~~-~~~------------------------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p 232 (400)
T PRK11646 191 ---STV-RTP------------------------------VREGMTRVLRDKRFVTYVL----TLTGYYMLAVQVMLMLP 232 (400)
T ss_pred ---ccc-chh------------------------------hHHHHHHHHcCchHHHHHH----HHHHHHHHHHHHHHhhh
Confidence 000 000 0112233333322111111 11111111222345678
Q ss_pred HHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhh-hcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhH
Q 048207 264 VLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD-KLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAY 342 (466)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (466)
.+.++.+.++...+ .......+....+....+++.| |++.++.+..+..+..++..++... +..+
T Consensus 233 ~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~ 298 (400)
T PRK11646 233 IMVNDIAGSPSAVK-WMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-------------SNLQ 298 (400)
T ss_pred hhHHhhcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------------hhHH
Confidence 88887776666665 6666666666655555566555 4555555555655555555444332 1122
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048207 343 LILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK 406 (466)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
.......+++.+.+...++. ..+..+..|++.|++++|+.+....++..++|.+.|.+.++.+
T Consensus 299 ~~~~~~~l~~~g~~~~~p~~-~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 299 QLFTLICLFYIGSIIAEPAR-ETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHHHHHHHHHHccH-HHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 33333344444444333333 5666799999999999999999999999999999999998753
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=241.88 Aligned_cols=349 Identities=13% Similarity=0.042 Sum_probs=240.7
Q ss_pred CccccccccCCcch-----hHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Q 048207 23 DTKVSDYCKFDSQL-----LTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLL 97 (466)
Q Consensus 23 ~~~i~~~~~~s~~~-----~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 97 (466)
.|.+.+++|++..+ .|++.+++.++..++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|++
T Consensus 37 l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (408)
T PRK09874 37 LPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRAL 116 (408)
T ss_pred HHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566778888655 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhc
Q 048207 98 LGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLF 176 (466)
Q Consensus 98 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~ 176 (466)
.|++.+ ..+....++.|++|+++|++++++...+..+|..+++.+++.+.+. .+||+.|++.++..++..+. .++
T Consensus 117 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 192 (408)
T PRK09874 117 LGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS---YGLRPVFFITASVLFLCFLVTLFC 192 (408)
T ss_pred HHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999865 5677788899999999999999999999999999999999888764 45999999988776665443 344
Q ss_pred ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccch
Q 048207 177 LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVN 256 (466)
Q Consensus 177 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (466)
+||+++. .++ .++ . +.+ +..+.++++. .................
T Consensus 193 ~~~~~~~---~~~-~~~-~--------------~~~--------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 236 (408)
T PRK09874 193 IRENFQP---VSK-KEM-L--------------HMR--------------EVVTSLKNPK---LVLSLFVTTLIIQVATG 236 (408)
T ss_pred hccCccc---ccc-hhh-h--------------HHH--------------HHHHhCcCCc---hHHHHHHHHHHHHHHHH
Confidence 6664321 000 000 0 000 0011111211 11111111111111223
Q ss_pred hHHhhHHHHHhhhCCCcchh---hHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC
Q 048207 257 IISFYAPVLFRTIKLSENTS---LLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333 (466)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
....+.+.+.++.+.+.... .+......+++.+++.+..+++.||++||+.+..+.....+..+.....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------- 308 (408)
T PRK09874 237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------- 308 (408)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--------
Confidence 34445566665544333221 1144556677888889999999999999998887776665555443322
Q ss_pred CCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhh
Q 048207 334 GGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFF 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
+..+...+...+.+.+.+...+.. .....+..|++.+++.+++.+.+..++..++|.+.|.+.+..++...+..
T Consensus 309 -----~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~ 382 (408)
T PRK09874 309 -----QTPLQLGILRFLLGAADGALLPAV-QTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLV 382 (408)
T ss_pred -----ccHHHHHHHHHHHHhhhHhhHHHH-HHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHH
Confidence 223333344444455544443333 34446778889999999999999999999999999999998887666666
Q ss_pred HHHHHHHHHhhh
Q 048207 414 GGWLTVMTTFVH 425 (466)
Q Consensus 414 ~~~~~~~~~~~~ 425 (466)
.+.+.+++.+..
T Consensus 383 ~~~~~l~~~~~~ 394 (408)
T PRK09874 383 TAGVVLFNAVYS 394 (408)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=234.44 Aligned_cols=328 Identities=16% Similarity=0.111 Sum_probs=234.4
Q ss_pred cCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhh
Q 048207 21 REDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGV 100 (466)
Q Consensus 21 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 100 (466)
...|.+++++|+|.++.+++.+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ .+++.+.+++.|++.|+
T Consensus 21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 99 (355)
T TIGR00896 21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGV 99 (355)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999988888887 78999999999999999
Q ss_pred hhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCC
Q 048207 101 GIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180 (466)
Q Consensus 101 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 180 (466)
+.+...+....++.|++| ++|++++++.+.+.++|..+++.+++.+.+..+ .+||+.|...++..++... .++|+.
T Consensus 100 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~~~--~~~~~~ 175 (355)
T TIGR00896 100 GIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLALL--AWIPQV 175 (355)
T ss_pred HHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH--HHhhhh
Confidence 999988888889999986 689999999999999999999988877765432 2499998876655443322 233443
Q ss_pred hhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHh
Q 048207 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISF 260 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
++ +++ + +++..+...++.+|++.. +...+........+.....
T Consensus 176 ~~----~~~--~---------------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 218 (355)
T TIGR00896 176 RR----RVA--A---------------------------NQTTTRLTPVRIWRSPLA----WQVTVFFGLQSGLYYSLIG 218 (355)
T ss_pred cc----ccC--C---------------------------CCCCCCCCCchhhcCHhH----HHHHHHHHHHHHHHHHHHH
Confidence 21 000 0 000001122333333222 2222222223333456667
Q ss_pred hHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcC-CeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccch
Q 048207 261 YAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLG-RKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
|.|.++++.|++....+ ...+...++.++++++.|++.||++ ||+.+..+..+..++.+.+.+.. ..
T Consensus 219 ~lp~~~~~~g~~~~~~g-~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 286 (355)
T TIGR00896 219 WLPAILISHGASAATAG-SLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-----------MH 286 (355)
T ss_pred HHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-----------hh
Confidence 88999888888887777 8888899999999999999999995 55555566556665555444321 11
Q ss_pred hhHHHHHHHHHHHHhhhcccccccccccc-ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPS-EIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK 406 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
... . ...+++.+.+...+.. ..... +..+++.++...++.+.+++++..++|.+.|.+.|+.+
T Consensus 287 ~~~--~-~~~l~g~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 287 GLW--A-WALVLGLGQGGAFPLA-LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHH--H-HHHHHHHhhhhHhHHH-HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 1 2334444444433332 22323 33445677899999999999999999999999999887
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=226.18 Aligned_cols=336 Identities=17% Similarity=0.129 Sum_probs=258.3
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchh---HHHHHHHHhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIY---MLIFGRLLLG 99 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~---~l~~~r~l~G 99 (466)
.+.|++|+|+|+.|.+++.++..+..++..++.|.+.||+|.|++..++.++..+-++..+++.+++ ++++.+.+.|
T Consensus 37 ~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G 116 (417)
T COG2223 37 GVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLG 116 (417)
T ss_pred HhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999999999999986555 9999999999
Q ss_pred hhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHH-Hhhccc
Q 048207 100 VGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTI-GSLFLP 178 (466)
Q Consensus 100 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~ 178 (466)
++. ....+...++++|+||+++|.++|+.. ..++|..+...++..+....+...||....+..+..++..+ .++...
T Consensus 117 ~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 117 LAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred ccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 985 478889999999999999999999999 88889888888877766542211299888888877766544 444566
Q ss_pred CChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhH
Q 048207 179 ETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNII 258 (466)
Q Consensus 179 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (466)
|.|......++ ..+.+++.. .+++-.+.+.+.++..+.++..+
T Consensus 195 d~p~~r~~~~~---------------------------------~~~~~~~~v----~~~~~~W~lsllY~~tFG~Fvgf 237 (417)
T COG2223 195 DVPEHRASVKP---------------------------------QLPAQLKAV----FSNKDTWLLSLLYFATFGGFVGF 237 (417)
T ss_pred CChhhhccccc---------------------------------cchhHHHHH----hcCcchHHHHHHHHHHHHHHHHH
Confidence 65531000000 000122223 32344555666666777788889
Q ss_pred HhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCcc
Q 048207 259 SFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFS 337 (466)
Q Consensus 259 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
..+.|.|++ +++.+...++ .......+.+.+.++++|+++||+|.+|.+......+.++........... . .
T Consensus 238 s~~l~~~~~~~fg~~~~~Ag-~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~-----~-~ 310 (417)
T COG2223 238 SAYLPMYLVTQFGLSPVTAG-LIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF-----G-H 310 (417)
T ss_pred HHHHHHHHHHhcCCChhhHH-HHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc-----c-c
Confidence 999998885 6888988888 788888899999999999999999999999988888888877776543110 0 0
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048207 338 IGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK 406 (466)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
..................+.+.... +-.+...+|. +.|.+.|++...+.+|++..|..++...+..+
T Consensus 311 ~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg 377 (417)
T COG2223 311 GGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG 377 (417)
T ss_pred CcchHHHHHHHHHHHHHhccCcchh-eeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc
Confidence 1223334444444555555666665 5555677774 67999999999999999999999999999988
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=239.64 Aligned_cols=345 Identities=9% Similarity=0.034 Sum_probs=237.1
Q ss_pred CCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhh---hhccchhHHHHHHHHh
Q 048207 22 EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALG---GSAFNIYMLIFGRLLL 98 (466)
Q Consensus 22 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~ 98 (466)
..|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+..+++++.+++ .++++++.++++|+++
T Consensus 48 ~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~ 127 (438)
T PRK10133 48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFII 127 (438)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3688899999999999999999999999999999999999999999999999999999885 5689999999999999
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcc-cC-----------------CC-----cc
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQK-IK-----------------GG-----WG 155 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~-----------------~~-----~~ 155 (466)
|+|.|...+....++.|+.++++|.+.+++.+..+.+|..+++.++..+.. .. +. .+
T Consensus 128 G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~ 207 (438)
T PRK10133 128 AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLS 207 (438)
T ss_pred HHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHH
Confidence 999999999999999998777777778999999999999999998765431 10 00 24
Q ss_pred hHHHHHhhh-HHHHHHHHH-hhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhh
Q 048207 156 WKISLAMAA-APASILTIG-SLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQ 233 (466)
Q Consensus 156 wr~~f~~~~-~~~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (466)
||++|+... +..++..+. ....||.+. +++ .++ +..+...+.+++++
T Consensus 208 w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~-~~~--------------------------~~~~~~~~~~~ll~ 256 (438)
T PRK10133 208 VQTPYMIIVAIVLLVALLIMLTKFPALQS----DNH-SDA--------------------------KQGSFSASLSRLAR 256 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc-ccc--------------------------cccchhhhHHHHHh
Confidence 677776433 333333222 223454221 000 000 00000112334444
Q ss_pred hhhhhHHHHHHHHHHHHhcccchhHHhhHHHHH-h-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhh
Q 048207 234 RKYRPQLVMAILIPFFQQVTGVNIISFYAPVLF-R-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLG 311 (466)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 311 (466)
++..+...+.. ++..........|.+.++ + ..|.++...+ .......++.++++++.+++.||+++|+.+..+
T Consensus 257 ~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag-~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~ 331 (438)
T PRK10133 257 IRHWRWAVLAQ----FCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAY 331 (438)
T ss_pred CchHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhcCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 43322222222 222223344445666664 4 4688888888 888999999999999999999999999988877
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHH
Q 048207 312 GIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFT 391 (466)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~ 391 (466)
..+..+.+.+..+. + . . .......+.+.+.+..+++. .....+..|+ +.+++.++.. ...+++
T Consensus 332 ~~~~~~~~~~~~~~-----------~-~-~-~~~~~~~l~glg~~~i~P~~-~s~a~~~~~~-~~~~as~l~~-~~~~g~ 394 (438)
T PRK10133 332 ALIAMALCLISAFA-----------G-G-H-VGLIALTLCSAFMSIQYPTI-FSLGIKNLGQ-DTKYGSSFIV-MTIIGG 394 (438)
T ss_pred HHHHHHHHHHHHHc-----------C-C-h-HHHHHHHHHHHHHHHHHHHH-HHHHHcccch-hhccchhHHh-HHhccc
Confidence 66665544433322 1 1 1 22334455666666666655 5555677765 4677788776 455788
Q ss_pred HHHHHHHHHHHhhcc-cceehhhHHHHHH
Q 048207 392 SLVAQTFLAMLCHFK-AGVFFFFGGWLTV 419 (466)
Q Consensus 392 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 419 (466)
.++|++.|.+.+..| ....++....+.+
T Consensus 395 ~~~~~i~G~l~~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 395 GIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 999999999998876 3444444333333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=235.32 Aligned_cols=327 Identities=11% Similarity=0.054 Sum_probs=231.8
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhh---ccchhHHHHHHHHhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS---AFNIYMLIFGRLLLG 99 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G 99 (466)
.|.+++++|+|..+.|++.+.+.+++.+++++.|++.||+|||+++.++..+++++.+++.. .++++.+++.|++.|
T Consensus 26 ~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G 105 (410)
T TIGR00885 26 VPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILT 105 (410)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999988644 468999999999999
Q ss_pred hhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC-----------------------CCcch
Q 048207 100 VGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK-----------------------GGWGW 156 (466)
Q Consensus 100 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----------------------~~~~w 156 (466)
+|.|...+....++.+..|+++|++.+++.+...++|..+++.++..+.... +..+|
T Consensus 106 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 185 (410)
T TIGR00885 106 AGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASV 185 (410)
T ss_pred hhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987664221 11369
Q ss_pred HHHHHhhhHHHHHHHHHhhc--ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhh
Q 048207 157 KISLAMAAAPASILTIGSLF--LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQR 234 (466)
Q Consensus 157 r~~f~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (466)
|++|++.+++.++..+...+ .||.++ ++ ++ +++.+.+.++.+|+
T Consensus 186 ~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~--~~---------------------------~~~~~~~~~~~~~~ 231 (410)
T TIGR00885 186 QTPYMIIGAVVLAVALLIMLTKMPALNH-----SD--AK---------------------------QISFSASLSRLARI 231 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc--cc---------------------------cccchhhHHHHHhC
Confidence 99999888776665444333 343211 00 00 00001122233333
Q ss_pred hhhhHHHHHHHHHHHHhcccchhHHhhHHHHHhhhCCC--cchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhh
Q 048207 235 KYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLS--ENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGG 312 (466)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 312 (466)
+...... +..++..........+.+.|.++.+.. ...+. ........+..+|+++++++.||+++|+.+.+..
T Consensus 232 ~~~~~~~----l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~-~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~ 306 (410)
T TIGR00885 232 RHYREGV----IAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAA-NYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYA 306 (410)
T ss_pred hhHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 3222222 222223333444556777777654322 22233 3455556778899999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHH
Q 048207 313 IQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTS 392 (466)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~ 392 (466)
.+..+..++.... + + ........+.+.+.+..++.+ +....+..+++.+..+.++.... +|+.
T Consensus 307 ~~~~~~~ll~~~~-----------~-~--~~~~~~l~~~glf~s~~fp~i-~sl~~~~~g~~~~~~s~~l~~~~--~Gga 369 (410)
T TIGR00885 307 IIGMALCLGSIFA-----------G-G--HVGLYCLTLCSAFMSLMFPTI-YGIALKGLGQDTKYGAAGLVMAI--IGGG 369 (410)
T ss_pred HHHHHHHHHHHHc-----------C-C--hHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhhhHHHHHHHH--hccc
Confidence 7776666655543 1 1 122344444455555555444 66667888876655555555544 9999
Q ss_pred HHHHHHHHHHhhc
Q 048207 393 LVAQTFLAMLCHF 405 (466)
Q Consensus 393 ~~~~~~~~~~~~~ 405 (466)
+.|++.|.+.|..
T Consensus 370 ~~p~l~G~~~d~~ 382 (410)
T TIGR00885 370 IVPPLQGFIIDMK 382 (410)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999999964
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=235.49 Aligned_cols=341 Identities=11% Similarity=0.030 Sum_probs=237.2
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGID 103 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g 103 (466)
+.+++++|+|..+.|++.+.+.++..+++++.|+++||+|||+++.++.++..++.++.+++++++.+++.|++.|.+.+
T Consensus 32 ~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 111 (395)
T PRK10054 32 IYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYS 111 (395)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhcccCChh
Q 048207 104 FGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLFLPETPN 182 (466)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es~~ 182 (466)
...+...++..|..|+++|++++++.....++|.+++|.+++.+.+ .+||.+|++.++..++..+. .+++||+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 187 (395)
T PRK10054 112 VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFPLVFIQIWVQRSEK 187 (395)
T ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888899999999999999999999999999999999999998764 46999999888776665443 344555431
Q ss_pred hhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhH
Q 048207 183 SIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYA 262 (466)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (466)
. +++ +++ + ..+.++.++++..........+.... ......+.
T Consensus 188 ~---~~~-~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~ 229 (395)
T PRK10054 188 A---IAT-ETG--S----------------------------VWSPSVLLQDKALLWFTCSGFLASFV----SGAFASCI 229 (395)
T ss_pred c---ccc-chh--h----------------------------hhhhhhhccCceehHHHHHHHHHHHH----HHHhhhhH
Confidence 0 000 000 0 00012233333222222222221111 22222233
Q ss_pred HHHH---hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccch
Q 048207 263 PVLF---RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 263 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
+.+. ++.+.+....+ .......+.........+++.||.++|+.+..+..+..++...+.... +
T Consensus 230 ~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------~ 296 (395)
T PRK10054 230 SQYVMVVADSDFAEKVVA-VVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG------------N 296 (395)
T ss_pred HHHHHHhcccchHHHHHH-HHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc------------h
Confidence 4443 23344443444 556666666667777888999999999888777766666655444321 2
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHH
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTV 419 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (466)
..+...+...+++.+..... |.....+.+..|++.|++..+..+ ...+|..++|.+.|.+.|+.+....+...+.+..
T Consensus 297 ~~~~~~~~~~~~~~g~~~~~-p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~ 374 (395)
T PRK10054 297 SLLLWGMSAAVFTVGEIIYA-PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIV 374 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHH
Confidence 23333344445555543322 333556678899999999988655 6778999999999999999986655554443333
Q ss_pred HH
Q 048207 420 MT 421 (466)
Q Consensus 420 ~~ 421 (466)
.+
T Consensus 375 ~~ 376 (395)
T PRK10054 375 AA 376 (395)
T ss_pred HH
Confidence 33
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=230.64 Aligned_cols=347 Identities=12% Similarity=0.108 Sum_probs=226.2
Q ss_pred ccccccccCCcchhHHHHHhhhH-HHHHHHHhHHhhhhhhcchHHH-HHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYI-TGILASLIASSVTRALGGKVSI-LIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
+.+++++|+|.++.|++.+...+ +..++.++.++ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|..
T Consensus 40 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 118 (393)
T PRK15011 40 IFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSF 118 (393)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44688999999999999876655 55566655666 9999999875 556666678888888999999887666555555
Q ss_pred hhhhhhhhhHHHHhcCCCcccC--chhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhccc
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRG--AFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLFLP 178 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~ 178 (466)
.+...|...+++.|+.++++|. ...++.+.+.++|.+++|.+++.+.+. .|||..|++.++..++..+. .+++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~---~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 119 GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG---FSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5567888888888887766553 345788889999999999999998764 46999999988777665444 45578
Q ss_pred CChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhH
Q 048207 179 ETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNII 258 (466)
Q Consensus 179 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (466)
|.++. +++ ++ + + ....+ +++ +..+........ ....+...
T Consensus 196 ~~~~~---~~~--~~--~-----------------------~----~~~~~---~~~--~~~~~~~~~~~~-~~~~~~~~ 235 (393)
T PRK15011 196 SMRKE---LPL--AT--G-----------------------T----LEAPR---RNR--RDTLLLFVICTL-MWGTNSLY 235 (393)
T ss_pred ccCCC---Ccc--cc--c-----------------------c----ccccc---ccc--ccHHHHHHHHHH-HHHHHHHH
Confidence 76521 000 00 0 0 00000 000 001111111111 11223445
Q ss_pred HhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCcc
Q 048207 259 SFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFS 337 (466)
Q Consensus 259 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
..+.|.+++ +.+.+..+.+ .......++.+++.++.|+++||++||+.+..+.....+........
T Consensus 236 ~~~~p~~l~~~~~~~~~~~g-~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------ 302 (393)
T PRK15011 236 IINMPLFIINELHLPEKLAG-VMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA------------ 302 (393)
T ss_pred HHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH------------
Confidence 567787764 5688877766 66666667788899999999999999987765544444332222111
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHH
Q 048207 338 IGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417 (466)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (466)
+..+..+....+.....+...... ..+..|.+|+ .|++++++.+...++|..+++.+.|.+.+..++...+....++
T Consensus 303 -~~~~~~l~~~~l~~~~~g~~~~~~-~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~ 379 (393)
T PRK15011 303 -HSPAILLGLQLLNAIYIGILGGIG-MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVM 379 (393)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 112222222222222222222222 3444688885 5899999999999999999999999999988877666666666
Q ss_pred HHHHHhhheeccc
Q 048207 418 TVMTTFVHFFLPE 430 (466)
Q Consensus 418 ~~~~~~~~~~~~~ 430 (466)
.+++.+.++..||
T Consensus 380 ~~~~~~~~~~~~~ 392 (393)
T PRK15011 380 IIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHhhcC
Confidence 6666666665553
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=234.92 Aligned_cols=330 Identities=15% Similarity=0.111 Sum_probs=221.8
Q ss_pred Ccc-ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc-chhHHHHHHHHhhh
Q 048207 23 DTK-VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF-NIYMLIFGRLLLGV 100 (466)
Q Consensus 23 ~~~-i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~ 100 (466)
.|. +++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+.++.++..++.+++++++ +++.+++.|+++|+
T Consensus 24 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~ 103 (366)
T TIGR00886 24 AVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGI 103 (366)
T ss_pred hhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 463 8899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC-------CCcchHHHH-HhhhHHHH-HHH
Q 048207 101 GIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK-------GGWGWKISL-AMAAAPAS-ILT 171 (466)
Q Consensus 101 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-------~~~~wr~~f-~~~~~~~~-~~~ 171 (466)
+.+. .+....+++|++|+++|++++++.....++|..+++.+++.+.... ...+||+.| +..++... +..
T Consensus 104 ~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 182 (366)
T TIGR00886 104 AGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPAL 182 (366)
T ss_pred hchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHH
Confidence 9664 5667889999999999999999999877788777777765544311 124699998 44344433 334
Q ss_pred HHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHh
Q 048207 172 IGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQ 251 (466)
Q Consensus 172 ~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (466)
+...+.+|+|+.. ++ +++.+. + +.. .. .+++.....++.++++. .+...+.....
T Consensus 183 ~~~~~~~~~~~~~---~~-~~~~~~--~---~~~-~~-----------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 237 (366)
T TIGR00886 183 LIFFVGADTPPGK---PA-TGKLSF--K---GAR-WS-----------VGTGALGDQLKVFRDRH----TWILALLYSVT 237 (366)
T ss_pred HHHHhcccCCccc---cc-chhccc--c---ccc-cc-----------ccchhHHHHHHHHhccc----hhhHHHHHHHH
Confidence 4445566665310 00 000000 0 000 00 00000012233333322 12222222223
Q ss_pred cccchhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhc
Q 048207 252 VTGVNIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQL 330 (466)
Q Consensus 252 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (466)
.........+.|.++++ .+.+..+.+ .......+..++++++.+++.||+|+|+.+..+......+..++.....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--- 313 (366)
T TIGR00886 238 FGSFLGVSSIFAMFFKDQFGLSKVTAG-AYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV--- 313 (366)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC---
Confidence 33345566777878754 688887777 7778888899999999999999999998877766655555544443210
Q ss_pred CCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHH
Q 048207 331 GDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLF 390 (466)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 390 (466)
+....+.......+.....+...+.. +....+..| +++|+++|+.+.++++|
T Consensus 314 ------~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 314 ------SPLSLAVFIVLFVALFFFSGAGNGST-FALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred ------CcchHHHHHHHHHHHHHHhccccchh-hhcchhhch-hhcccHHHHHHHhccCC
Confidence 10023333333333444444444444 555578777 68999999999887764
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=233.90 Aligned_cols=359 Identities=13% Similarity=0.070 Sum_probs=243.7
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhh-----cchHH-HHHHHHHHHHHHhhhhhc---cchhHHHHH
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRAL-----GGKVS-ILIGGVAFLAGSALGGSA---FNIYMLIFG 94 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~~---~~~~~l~~~ 94 (466)
|...++.|.|..++|.+ +.....+ ++.+++|+++||+ |||+. +..+.+..+++..++++. ++++.+.+.
T Consensus 36 ~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~ 113 (491)
T PRK11010 36 QAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAAL 113 (491)
T ss_pred HHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 44456668899999987 3344444 6899999999999 99985 667777777887777775 478889999
Q ss_pred HHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh
Q 048207 95 RLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS 174 (466)
Q Consensus 95 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 174 (466)
|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+. ..|||..|++.++..++..+..
T Consensus 114 ~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~~GWr~~f~i~a~l~ll~~l~~ 191 (491)
T PRK11010 114 AVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--YLGWQGMYWLMAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887762 1469999999888777766666
Q ss_pred hcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhccc
Q 048207 175 LFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTG 254 (466)
Q Consensus 175 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (466)
+++||+++.. ++ +++.+ ++...++++.++++..+....... ... ..
T Consensus 192 ~~~~e~~~~~---~~-~~~~~--------------------------~~~~~~l~~~~~~~~~~~~ll~~~---l~~-~~ 237 (491)
T PRK11010 192 LLAPEPTDTI---PV-PKTLE--------------------------QAVVAPLRDFFGRNNAWLILLLIV---LYK-LG 237 (491)
T ss_pred HhcCCCcccc---cc-ccchh--------------------------hhHHHHHHHHHcCcCHHHHHHHHH---HHH-HH
Confidence 6678865310 00 00000 000112344443332222222111 111 12
Q ss_pred chhHHhhHHHHH-hhhCCCcchhhHHHH-HHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCC
Q 048207 255 VNIISFYAPVLF-RTIKLSENTSLLMSA-LVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGD 332 (466)
Q Consensus 255 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (466)
......+.+.++ ++.|++..+.+ ... ....++.+++.+++|+++||+++|+.+.++..+..+..+.+.....
T Consensus 238 ~~~~~~~~~~~l~~~~G~s~~~~g-~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~----- 311 (491)
T PRK11010 238 DAFAMSLTTTFLIRGVGFDAGEVG-LVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI----- 311 (491)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 223334445554 56899888887 555 4556789999999999999999988776655544444433322111
Q ss_pred CCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehh
Q 048207 333 HGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFF 412 (466)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (466)
..+..+......++...+.+...... +.+..+..+++.+++..|+.+....++..+++++.|.+.+..|+...+.
T Consensus 312 ----~~~~~~~l~~~~~l~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~ 386 (491)
T PRK11010 312 ----TDKNLYSMGAAVFFENLCGGMGTAAF-VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYL 386 (491)
T ss_pred ----ccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 00112222222232222222223333 4555688898999999999999999999999999999999999877777
Q ss_pred hHHHHHHHHHhhheecccC
Q 048207 413 FGGWLTVMTTFVHFFLPET 431 (466)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~ 431 (466)
+.+++.+.+++.....+++
T Consensus 387 ~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 387 FSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7777777776666555543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=229.37 Aligned_cols=328 Identities=13% Similarity=0.145 Sum_probs=230.2
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+++|+|+.+.+++.+.+.++..++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|++.|++.
T Consensus 31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (394)
T PRK11652 31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGT 110 (394)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHH-HHhhcccCCh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILT-IGSLFLPETP 181 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~es~ 181 (466)
+...+....+..|.+++++|+++.++...+..+|..++|.+++.+.+. .+||+.|++.++..++.. +..++.||++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 111 GVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL---FGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 988888888999999999999999999999999999999999887764 469999999887666543 3445577765
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
+. +++ +++. +.++++.++++..+...... +........+..+
T Consensus 188 ~~---~~~-~~~~------------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 229 (394)
T PRK11652 188 PA---DAR-RTRV------------------------------LASYRTLLSNRRFNCYLLML----IGTLAGIAVFEAC 229 (394)
T ss_pred cc---ccc-hhHH------------------------------HHHHHHHHcChHHHHHHHHH----HHHHHHHHHHHHh
Confidence 31 000 0000 11222333332222222211 1111223333445
Q ss_pred HHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 262 APVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 262 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
.+.++++ .|.+..+.+ .......++.+++.++.+++.||.+++... ......+..+.+...... ....
T Consensus 230 ~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~ 298 (394)
T PRK11652 230 SGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWF--------GVMN 298 (394)
T ss_pred ChHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh--------cccc
Confidence 5666655 788877766 677777788888889999999998733222 222222222221111100 1112
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCH 404 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
.+.......+.+.+.+...+.. ..+..|..| +.++++.++.+....+++.+++.+.+.+...
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 299 VWTLLVPAALFFFGAGMLFPLA-TSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3334444455555555544444 444467777 5789999999999999999999888877554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=223.89 Aligned_cols=342 Identities=13% Similarity=0.081 Sum_probs=244.1
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHH----HHHHHHHHHHHhhhhhccchhHHHHHHHHh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSI----LIGGVAFLAGSALGGSAFNIYMLIFGRLLL 98 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l----~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 98 (466)
.|.+.+++|+|..++|++.+++.++..++++++|+++||+|||+.. ..+..+..+ ..+.++++++.+++.|+++
T Consensus 27 l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~ 104 (382)
T TIGR00902 27 FPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLF 104 (382)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999985433 222222222 2445788999999999999
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhccc
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLP 178 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 178 (466)
|.+.+...|...++..|+ +++|++..+......++|.+++|.+++.+.+. +|||..|++.++..++..+.. .++
T Consensus 105 ~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~---~g~~~~f~~~~~~~~~~~~~~-~~~ 178 (382)
T TIGR00902 105 ALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM---FDEQNILAILTAGLAFMLIGF-LIK 178 (382)
T ss_pred HHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHH-HcC
Confidence 999888889988887765 47789999999999999999999999888875 469999988765533333333 333
Q ss_pred CChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhH
Q 048207 179 ETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNII 258 (466)
Q Consensus 179 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (466)
|+++. +++ .++ ++++...+.++.+|++.. +...+..+.........
T Consensus 179 ~~~~~---~~~-~~~--------------------------~~~~~~~~~~~~l~~~~~----~~~l~~~~l~~~~~~~~ 224 (382)
T TIGR00902 179 PTIPP---KDA-IPE--------------------------DESQGDSAFIALLKNPMN----LRFLAAVCLIQGAHAAY 224 (382)
T ss_pred CCCCC---Ccc-ccc--------------------------cccccchhHHHHHcChHH----HHHHHHHHHHHHHHHHH
Confidence 33210 000 000 000001123444444322 22222222233345566
Q ss_pred HhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccc
Q 048207 259 SFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSI 338 (466)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (466)
..+.|.++++.|.+....+ .......++.+++.++.+++.||+++|+.+.++.+...+....+...
T Consensus 225 ~~~~~~~l~~~g~s~~~~g-~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------------- 290 (382)
T TIGR00902 225 YGFSAIYWQAAGISASATG-LLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI------------- 290 (382)
T ss_pred HHHHHHHHHHCCCCHhHHH-HHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------------
Confidence 6778888888999988888 77778899999999999999999999999998888888887766543
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHH-HHHHHHHHHHHHHHHHHhhcccceehhhHHHH
Q 048207 339 GYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVA-VGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417 (466)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (466)
++.+..+....+.+..++...... ..++++. |++.|++++++.+. ...++..+++.+.|.+.|+.+...++..+++
T Consensus 291 ~~~~~~~~~q~l~g~~~~~~~~~~-~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~- 367 (382)
T TIGR00902 291 EAFPLIFLLQILHCGTFAVCHLAA-MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAII- 367 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-
Confidence 334555666677777777666665 5566677 88999999999874 5678899999999999999886444444443
Q ss_pred HHHHHh
Q 048207 418 TVMTTF 423 (466)
Q Consensus 418 ~~~~~~ 423 (466)
.+.+.+
T Consensus 368 ~~~~~~ 373 (382)
T TIGR00902 368 AAAAFF 373 (382)
T ss_pred HHHHHH
Confidence 333433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=225.16 Aligned_cols=355 Identities=11% Similarity=0.040 Sum_probs=231.9
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcc-hHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGG-KVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
+.+++++|+|..|.|++.+++.++..++++++|.++||+|| |+++.++.++..++..+..+.++++.+++.|++.|++.
T Consensus 27 ~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (418)
T TIGR00889 27 SYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAY 106 (418)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999965 77889899999899989999999999999999999987
Q ss_pred hhhhhhhhHHHH--------hcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh
Q 048207 103 DFGNQSVPLYLS--------EMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS 174 (466)
Q Consensus 103 g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 174 (466)
+...+...++.. |......|.|..+ .+|.++++.+++.+... ..|+ +|++.++..++..+..
T Consensus 107 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~---~~~~-~f~~~~~~~~~~~~~~ 176 (418)
T TIGR00889 107 MPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE---LSNI-QLYITAGSSALLGVFA 176 (418)
T ss_pred ccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc---chhH-HHHHHHHHHHHHHHHH
Confidence 777776655532 2233334555555 36777888887766321 2355 4555555555555556
Q ss_pred hcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhccc
Q 048207 175 LFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTG 254 (466)
Q Consensus 175 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (466)
+++||+|+. ++++..+.+ +..+.+.++.+|++..........+. ...
T Consensus 177 ~~~~e~~~~---~~~~~~~~~--------------------------~~~~~~~~~~~k~~~~~~~~~~~~~~----~~~ 223 (418)
T TIGR00889 177 LTLPDIPVA---KSTAKMSIK--------------------------VMLGLDAFILFKNKRMAIFFFFSMLL----GAP 223 (418)
T ss_pred hcCCCCCCC---ccccccCHH--------------------------HHhhhhHHHHhcCCCeeeHHHHHHHH----HhH
Confidence 678887631 100000000 00001122333333222222222221 112
Q ss_pred chhHHhhHHHHHhhhCCCc--------chhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHH
Q 048207 255 VNIISFYAPVLFRTIKLSE--------NTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIM 326 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 326 (466)
......+.+.+.++.+.++ ...+ .......+..+++.+..+++.||+|+|+.+..+.++..+...++....
T Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g-~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~ 302 (418)
T TIGR00889 224 LQITNIFGNGFLHEFGRNPEFADSFVVKNAS-IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD 302 (418)
T ss_pred HHHHHHhHHHHHHHhcccccccchhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 2334455677777766554 2334 777888888999999999999999999999888887777665554321
Q ss_pred HhhcCCCCCccch-hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHH-HHHHHHHHHHHHHHHHHHhh
Q 048207 327 AAQLGDHGGFSIG-YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITV-AVGLLFTSLVAQTFLAMLCH 404 (466)
Q Consensus 327 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 404 (466)
+.. ..+...+..++.+.+.+...... ..++.|.+|++.|++++|+.+ ....++..++|.+.|.+.++
T Consensus 303 ----------~~~~~~~~l~l~~~l~g~~~~~~~~~~-~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~ 371 (418)
T TIGR00889 303 ----------PEYFGYALLFLSMIVYGCAFDFFNISG-SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK 371 (418)
T ss_pred ----------cchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 101 12233344455555544333333 456689999999999999997 56788999999999999998
Q ss_pred cc------cceeh-hhHHHHHHHHHhhheecccCCC
Q 048207 405 FK------AGVFF-FFGGWLTVMTTFVHFFLPETKN 433 (466)
Q Consensus 405 ~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 433 (466)
.+ +...+ ..+++..+.+...+++.+|+++
T Consensus 372 ~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 372 MFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred hccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 54 34333 3444444555555666666543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=207.87 Aligned_cols=346 Identities=13% Similarity=0.059 Sum_probs=224.2
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhh
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGN 106 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 106 (466)
.++.+.+....|.+.|.+++.+.+.++.+|.++||+|||+++++|++..+++.++.+++.|+..++++|++.|+..| ..
T Consensus 60 ~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl 138 (451)
T KOG2615|consen 60 GEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NL 138 (451)
T ss_pred CCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-ch
Confidence 34444567788999999999999999999999999999999999999999999999999999778888999999988 66
Q ss_pred hhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhccc---CCCcchHHHHHhhhHHHHH-HHHHhhcccCChh
Q 048207 107 QSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKI---KGGWGWKISLAMAAAPASI-LTIGSLFLPETPN 182 (466)
Q Consensus 107 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~~~~wr~~f~~~~~~~~~-~~~~~~~~~es~~ 182 (466)
.+..++++|..++|+|++.++.....+++|.++||.+|+++... .+.+..-.+-++..+.... .....+++|||-+
T Consensus 139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~ 218 (451)
T KOG2615|consen 139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP 218 (451)
T ss_pred HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 78999999999999999999999999999999999999999872 2222233333444444444 4566778999843
Q ss_pred hhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhh-h--HHHHHHHHHHHHhcccchhHH
Q 048207 183 SIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYR-P--QLVMAILIPFFQQVTGVNIIS 259 (466)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~ 259 (466)
.+++ .++... .++..++ +.+........+ ...+|+... . ..+-.+.+..+.+...+....
T Consensus 219 ---~rk~-~~~~~~-~~~~~~~---~~~~~~~~~~~~---------v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~ 281 (451)
T KOG2615|consen 219 ---LRKR-NDEHST-LQEAADD---RLALLKFARIFK---------VAALRNPPLLDFISVLRIFGLHYFLYLELFSGLE 281 (451)
T ss_pred ---chhh-cccccc-hhhhhhh---hhhhcchhhhhh---------hhhhcCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111000 0000000 000000000000 000111100 0 111122222232222233344
Q ss_pred hhHHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcC--CeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCc
Q 048207 260 FYAPVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLG--RKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGF 336 (466)
Q Consensus 260 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
++.+.+. +.+|+++.+.+ .+....++.+.+.+....+..+|.+ .+-.+..+..++.-..+++..
T Consensus 282 ~t~~~l~~~rfg~ss~~~G-~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~------------ 348 (451)
T KOG2615|consen 282 NTVLFLTHGRFGYSSMQQG-KVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL------------ 348 (451)
T ss_pred hhHHHhhcCccCCChhhhe-eeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc------------
Confidence 4444332 56899998888 7777777777777776666666655 222222222222222222221
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048207 337 SIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF 405 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
...+........+..+..+...+.+ ..+.....|+++||+.+|+....+.++-+++|.+.|.+....
T Consensus 349 -~~~~~~l~~~s~l~sf~~A~~vt~L-t~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 349 -ARTPVVLYLGSTLKSFSTASVVTCL-TSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred -cccchhhhHHHHHHHHHHHHhhHHH-HHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 1233445555555655555555556 455578899999999999999999999999999998876544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=224.83 Aligned_cols=347 Identities=13% Similarity=0.036 Sum_probs=211.4
Q ss_pred cccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhh---hcc-----chhHHHHHHH
Q 048207 25 KVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGG---SAF-----NIYMLIFGRL 96 (466)
Q Consensus 25 ~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~-----~~~~l~~~r~ 96 (466)
.+++++|+|..+.|++.+++.++..++++++|+++||+|||++++++..+..++..... .++ .....++.++
T Consensus 36 ~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (420)
T PRK09528 36 WLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGI 115 (420)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677999999999999999999999999999999999999999887666554433211 111 1111223344
Q ss_pred HhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc
Q 048207 97 LLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF 176 (466)
Q Consensus 97 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 176 (466)
+.|.+.....+....+..+. ++++++.++......++|..+++.+++.+.+ .+|+.+|++.++.+++..+..++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 116 YLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred HhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHHHHHHHHHHHhc
Confidence 44433333333333333322 3457788899999999999999999998865 35999999988877766655555
Q ss_pred cc-CChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccc
Q 048207 177 LP-ETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGV 255 (466)
Q Consensus 177 ~~-es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (466)
.+ |.++ .++.++. + ..++++...+..++.+|++..+...+...... ..+
T Consensus 190 ~~~~~~~--------~~~~~~~--------------~----~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~----~~~ 239 (420)
T PRK09528 190 AKPDAPS--------TAKVANA--------------L----GANASAVSLKDALALLKLPKFWFLVLYVIGVA----CFY 239 (420)
T ss_pred ccccccc--------hhhhccc--------------h----hcccccccHHHHHHHccCCCeEeehHHHHHHH----HHH
Confidence 43 3221 0000000 0 00000000111223333332222222111111 112
Q ss_pred hhHHhhHHHHHhh----hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcC
Q 048207 256 NIISFYAPVLFRT----IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLG 331 (466)
Q Consensus 256 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (466)
.....+.|.++.+ .+.+....+ .......++..++.++.|++.||+++|+.+..+..+..+...++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------ 312 (420)
T PRK09528 240 DVFDQQFPNFFASFFATPEQGTRVFG-YLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------ 312 (420)
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc------
Confidence 2233344554433 234444444 67777788888999999999999999999888777777766655432
Q ss_pred CCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHhhccccee
Q 048207 332 DHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSI-TVAVGLLFTSLVAQTFLAMLCHFKAGVF 410 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (466)
++.+..+....+.+...+...... ..+..|.+|++.+++..+. .++...++..+++.+.|.+.|..|+...
T Consensus 313 -------~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~ 384 (420)
T PRK09528 313 -------TGPLEVSILKLLHAFEVPFLLVGV-FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGT 384 (420)
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence 223333333344443333322222 4555788899999988765 5677889999999999999999887666
Q ss_pred hhhHHHHHHHHH
Q 048207 411 FFFGGWLTVMTT 422 (466)
Q Consensus 411 ~~~~~~~~~~~~ 422 (466)
+...+.+.++..
T Consensus 385 f~~~~~~~~i~~ 396 (420)
T PRK09528 385 YLILGGIVLLFT 396 (420)
T ss_pred HHHHHHHHHHHH
Confidence 655444444333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=217.62 Aligned_cols=330 Identities=12% Similarity=0.034 Sum_probs=228.3
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcch----HHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGK----VSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLG 99 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 99 (466)
|...+|+|.|..+.|++.+++.++..++++++|+++||+||| +.+.++..+. .......++++|.+++.|++.|
T Consensus 28 ~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g 105 (382)
T PRK11128 28 SVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFN 105 (382)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHH
Confidence 455688999999999999999999999999999999999994 3333322222 2233445689999999999999
Q ss_pred hhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccC
Q 048207 100 VGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179 (466)
Q Consensus 100 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 179 (466)
++.+...+...+++.++ +++|++..+......++|..+||.+++.+.+. +|||..|++.++..++..+...+.||
T Consensus 106 ~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~ 180 (382)
T PRK11128 106 LFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---FGEQAILWILTAGVASMLLGQLLRPT 180 (382)
T ss_pred HHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHHHccCC
Confidence 99998999888888877 35688999999999999999999999998875 45999998877655544444444454
Q ss_pred ChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHH
Q 048207 180 TPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIIS 259 (466)
Q Consensus 180 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
.++ +++ +++ +.++...++++.+|++..........+. ...+....
T Consensus 181 ~~~----~~~-~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~----~~~~~~~~ 225 (382)
T PRK11128 181 IMP----QGE-SRQ--------------------------QESAGWPAWKALLKEPTVWRFLLCVSLL----QGSHAAYY 225 (382)
T ss_pred CCC----ccc-ccc--------------------------ccccccchHHHHHcChhHHHHHHHHHHH----HHHhHhHH
Confidence 321 000 000 0000122345555543322222222221 12234455
Q ss_pred hhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccch
Q 048207 260 FYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
.+.|.+.++.|.+....+ .......++.++..++.+++.||+++|+.+..+.....+..+.+... +
T Consensus 226 ~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------------~ 291 (382)
T PRK11128 226 GFSAIYWQAAGYSASTIG-YLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------------T 291 (382)
T ss_pred HHHHHHHHHCCCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------------h
Confidence 666777788888887777 77778888889999999999999999999888877777766554432 3
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHH-HHHHHHHHHHHHHHHHhhcccceeh
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAV-GLLFTSLVAQTFLAMLCHFKAGVFF 411 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (466)
+.+..+...++.+.+++...... ..+..+. +++++++..++.+.. ...+..++|.+.|.+.|..+...++
T Consensus 292 ~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~ 362 (382)
T PRK11128 292 ALPWLIVIQILHCGTFTVCHLAA-MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFW 362 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34455556666666665544444 4444565 556678888887644 4566689999999999998864333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=226.63 Aligned_cols=336 Identities=16% Similarity=0.132 Sum_probs=224.3
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh----hcchH-HHHHHHHHHHHHHhhhhhccc------hhHHH
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRA----LGGKV-SILIGGVAFLAGSALGGSAFN------IYMLI 92 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~~~------~~~l~ 92 (466)
+.+.+++|+++.++|++.++..+..++..++.|+++|| +|||| .++++....+++.+++.+.++ .+.++
T Consensus 24 ~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (437)
T TIGR00792 24 FFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAY 103 (437)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 44578899999999999999999999999999999997 68744 677888888888888877664 45677
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHhcCC-CcccCchhhHHHHHHHHHHHHHHHHhhhhccc----CCCcchHHHHHhhhHHH
Q 048207 93 FGRLLLGVGIDFGNQSVPLYLSEMAP-PKCRGAFNIGFQVCVATGILSANLLNYGTQKI----KGGWGWKISLAMAAAPA 167 (466)
Q Consensus 93 ~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~wr~~f~~~~~~~ 167 (466)
+.+++.+++.+...+...++..|..+ +++|++..++.+.+..+|..+++.+.+.+... .+..+||+.+.+.++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~ 183 (437)
T TIGR00792 104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIG 183 (437)
T ss_pred HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHH
Confidence 78899999988888888888899884 68899999999998888887776654444321 12357999999988877
Q ss_pred HHHHHH-hhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHH
Q 048207 168 SILTIG-SLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILI 246 (466)
Q Consensus 168 ~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (466)
++..+. .++.||+++. .+ .++ +++.+.++.+++.++++ .++...+
T Consensus 184 ~~~~~~~~~~~~e~~~~----~~-~~~-------------------------~~~~~~~~~~~~l~~~~----~~~~~~~ 229 (437)
T TIGR00792 184 VVSLIICFFGTKERYSE----IP-KNI-------------------------EKKLSLKQIFKALFKND----QLLILCL 229 (437)
T ss_pred HHHHHHHHcCCEecCCC----CC-ccc-------------------------ccCCCHHHHHHHHhCCH----HHHHHHH
Confidence 766544 4556765420 00 000 00000011223333332 2222222
Q ss_pred HHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHH
Q 048207 247 PFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIM 326 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 326 (466)
..+...........+.+.+.+....+..... .......++.+++.++.+++.||+|+|+.+..+..+..++.+.+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~- 307 (437)
T TIGR00792 230 AYLFYNLAFNIKNGVQVYYFTYVLGDPELFS-YMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA- 307 (437)
T ss_pred HHHHHHHHHHHHcchhheeEeeecCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-
Confidence 2222222233333344444443222334444 56667788999999999999999999999888877776665554432
Q ss_pred HhhcCCCCCccchhhHHHHHHHHHHHHhhhcccccccccccccccc-------ccchhhhhHHHHHHHHHHHHHHHHHHH
Q 048207 327 AAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFP-------LEIRSAGQSITVAVGLLFTSLVAQTFL 399 (466)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~ 399 (466)
+ +..+...+..++.+.+.+... +..+.+.+|..+ ++.+|...|+.+.+..++..+++.+.+
T Consensus 308 ----------~-~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 308 ----------G-SNLPLILVLIILAGFGQNFVT-GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred ----------c-hhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122333334444444444433 333555566654 556799999999999999999999999
Q ss_pred HHHhhccc
Q 048207 400 AMLCHFKA 407 (466)
Q Consensus 400 ~~~~~~~~ 407 (466)
.+.+..|+
T Consensus 376 ~ll~~~G~ 383 (437)
T TIGR00792 376 LILGIIGY 383 (437)
T ss_pred HHHHHcCC
Confidence 99987664
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=216.90 Aligned_cols=329 Identities=12% Similarity=0.079 Sum_probs=222.3
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhh-----cchHH-HHHHHHHHHHHHhhhhhc---cchhHHHH
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRAL-----GGKVS-ILIGGVAFLAGSALGGSA---FNIYMLIF 93 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~~---~~~~~l~~ 93 (466)
.|.+.+|+|+|.++.|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++....++. .+.+.+..
T Consensus 11 ~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 88 (356)
T TIGR00901 11 LPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAG 88 (356)
T ss_pred HHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 466788999999999999755 455555 99999999998 89897 567788888887777777 46667778
Q ss_pred HHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCC-----CcchHHHHHhhhHHHH
Q 048207 94 GRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKG-----GWGWKISLAMAAAPAS 168 (466)
Q Consensus 94 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~~~wr~~f~~~~~~~~ 168 (466)
..++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+....+ .++||..|++.++..+
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l 168 (356)
T TIGR00901 89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLIL 168 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHH
Confidence 88888999998999999999999999999999999999999999999999887765433 2349999999998777
Q ss_pred HHHHHhhc-ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHH
Q 048207 169 ILTIGSLF-LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIP 247 (466)
Q Consensus 169 ~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (466)
+..+..++ .||+++. +++ .++.+ ++ .+.++++.++++..++.......
T Consensus 169 ~~~~~~~~~~~e~~~~---~~~-~~~~~----------------~~----------~~~~~~~~~~~~~~~~~~~~~~~- 217 (356)
T TIGR00901 169 PGLLVTLFLAKEPQED---ASV-PKPLT----------------QA----------VLKPIREFFQRKNMIQALLLLLL- 217 (356)
T ss_pred HHHHHHHHhccCCCcc---ccc-chhHH----------------HH----------HHHHHHHHHHhcCchHHHHHHHH-
Confidence 76655544 5664320 000 00000 00 01123344433322222222222
Q ss_pred HHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHH-HHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHH
Q 048207 248 FFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTG-GIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIM 326 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 326 (466)
.+.....++....+.|.+.++.|++..+.+ ......+ ++.+++.++++++.||+|+|+.+..+.++..+...++.+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~ 296 (356)
T TIGR00901 218 IVLYKLGDSAATVLTTLFLLDMGFSKEEIA-LVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLA 296 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233445666778888877888888776 5554444 67789999999999999999988877777666555444331
Q ss_pred HhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHH
Q 048207 327 AAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGL 388 (466)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 388 (466)
... ..++.+.+..+......++.+.+.+....+. ..+..|.+|+++||+.+|+.+...+
T Consensus 297 ~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 297 SNG--HHDGITFPHLLMLFLTITLEAVTGGLGTVAF-VAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred hcC--cccccccchHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhcCCCccHHHHHHHHHHHh
Confidence 100 0000000122334444444455555555555 5666899999999999999887654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=250.07 Aligned_cols=333 Identities=12% Similarity=-0.032 Sum_probs=226.3
Q ss_pred ccccccCC--cchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhh---hhccchhHHHHHHHHhhh
Q 048207 26 VSDYCKFD--SQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALG---GSAFNIYMLIFGRLLLGV 100 (466)
Q Consensus 26 i~~~~~~s--~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~ 100 (466)
+..+++.+ ....+++.+++.+++.++++++|+++||+|||++++++.++..++.++. ..+++++.++++|+++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 115 (1146)
T PRK08633 36 LIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGA 115 (1146)
T ss_pred HHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 33444444 3457999999999999999999999999999999999887766555544 345789999999999999
Q ss_pred hhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCC------CcchHHHHHhhh-HHHHHHHHH
Q 048207 101 GIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKG------GWGWKISLAMAA-APASILTIG 173 (466)
Q Consensus 101 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~------~~~wr~~f~~~~-~~~~~~~~~ 173 (466)
+.+...+...+++.|++|+++|++++++...+..+|.++|+.+++++..... ..+|++.+.+.. ...++.++.
T Consensus 116 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1146)
T PRK08633 116 QSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIF 195 (1146)
T ss_pred HHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876410 012444444433 333344455
Q ss_pred hhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcc
Q 048207 174 SLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVT 253 (466)
Q Consensus 174 ~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (466)
.+.+||+|.....+++ ++... ..+. ....++.+++++..+..+ +..+....
T Consensus 196 ~~~~~~~~~~~~~~~~--~~~~~-------------~~~~----------~~~~~~~l~~~~~~~~~~----~~~~~~~~ 246 (1146)
T PRK08633 196 AYRLPKVPAAAPEVFD--KKKYL-------------FPKL----------LWRNLKLLRSDRVLWLAI----IGLSYFWF 246 (1146)
T ss_pred HhcCcCCCCCCccccc--ccccc-------------cHHH----------HHHHHHHHhcCcHHHHHH----HHHHHHHH
Confidence 5667887643111100 00000 0000 011223333332222222 22222222
Q ss_pred cchhHHhhHHHHH-hhhCCCcc-hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcC
Q 048207 254 GVNIISFYAPVLF-RTIKLSEN-TSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLG 331 (466)
Q Consensus 254 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (466)
.......+.|.++ +..+.+.. ..+ ++.....++.+++.++.+++.||+++++.+.++.++.+++.+++.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~g~s~~~~~g-~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------ 319 (1146)
T PRK08633 247 ISQLAQANFPAYAKEVLGLDNTFQVQ-YLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA------ 319 (1146)
T ss_pred HHHHHHHhhHHHHHHHhCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh------
Confidence 2334455566665 45788877 666 88888899999999999999999999888887777766666555443
Q ss_pred CCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048207 332 DHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAML 402 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 402 (466)
...+..++..++++.+.+....+. ..+..+..|++.||+++|+.+++..++..+++.+.+.+.
T Consensus 320 -------~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 320 -------PSLASVLVLFFLFGFSAGLFIVPL-NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred -------hhHHHHHHHHHHHHHHHHHhhHHH-HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344444555555555544444 556678999999999999999999988877665555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=216.12 Aligned_cols=351 Identities=13% Similarity=0.057 Sum_probs=229.0
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhh-----cchH-HHHHHHHHHHHHHhhhhhc---cchhHHHHH
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRAL-----GGKV-SILIGGVAFLAGSALGGSA---FNIYMLIFG 94 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~i~~~~~~~~---~~~~~l~~~ 94 (466)
|..-++.|+|.+++|++..+... .+..+++|+++||+ |||| .+.++..+.+++..+.++. ++++.+++.
T Consensus 23 ~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~ 100 (402)
T PRK11902 23 QAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGL 100 (402)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 33345669999999999777776 68999999999999 8876 7888888888888887776 357778888
Q ss_pred HHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh
Q 048207 95 RLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS 174 (466)
Q Consensus 95 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 174 (466)
.++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+.. .|||..|++.++..++..+..
T Consensus 101 ~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~--~gw~~~f~i~a~~~l~~~l~~ 178 (402)
T PRK11902 101 AVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV--LGWGNTYLLMAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999999999888776532 369999999888776665555
Q ss_pred hcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhccc
Q 048207 175 LFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTG 254 (466)
Q Consensus 175 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (466)
++.||+++. +++ .++.++ + .+.++++.+|++..+.......+......
T Consensus 179 ~~~~e~~~~---~~~-~~~~~~----------------~----------~~~~~~~l~~~~~~~~~l~~~~l~~~~~~-- 226 (402)
T PRK11902 179 LWAPEPEVP---ARP-PRSLGE----------------A----------VVGPLRDFFSRRGAWALLLLIVLYKLGDA-- 226 (402)
T ss_pred HhcCCCccc---ccc-cchhHH----------------H----------HHHHHHHHHhCcCHHHHHHHHHHHHhHHH--
Confidence 667776531 000 000000 0 01123445544433333332222221111
Q ss_pred chhHHhhHHHHHhhhCCCcchhhHHHHHHH-HHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC
Q 048207 255 VNIISFYAPVLFRTIKLSENTSLLMSALVT-GGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
.......+.+.++.|+++.+.+ ...... .++.+++.++.+++.||+++|+.+..+..+..+..+.+.....
T Consensus 227 -~~~~~~~~~l~~~~G~~~~~~g-~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~------ 298 (402)
T PRK11902 227 -FAGSLSTTFLIRGAGFSAGEVG-IVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV------ 298 (402)
T ss_pred -HHHHHHHHHHHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 1112233445566788887777 555443 4568899999999999999998876666555544433322211
Q ss_pred CCccchhhHHHHHHHH----HHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccce
Q 048207 334 GGFSIGYAYLILVLIC----VYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGV 409 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
..+..+....... ..+...+.. .+....++.+.+|.+. .++.+....++...++++.|.+.|..|+..
T Consensus 299 ---~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~ 370 (402)
T PRK11902 299 ---TPKHLWTMALAIGIENLCGGMGTAAF-VALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPG 370 (402)
T ss_pred ---cCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 1112232222222 222222222 2233455566666544 455555666777767788999999999877
Q ss_pred ehhhHHHHHHHHHhhhe
Q 048207 410 FFFFGGWLTVMTTFVHF 426 (466)
Q Consensus 410 ~~~~~~~~~~~~~~~~~ 426 (466)
.+...+++.+.+++...
T Consensus 371 ~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 371 FYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77766666666555543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=216.34 Aligned_cols=343 Identities=13% Similarity=0.038 Sum_probs=220.8
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhh---hhcc-----chhHHHHHHHH
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALG---GSAF-----NIYMLIFGRLL 97 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~-----~~~~l~~~r~l 97 (466)
+++++|+|+.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++.... .+.+ ....+++.|++
T Consensus 29 ~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (396)
T TIGR00882 29 LHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLY 108 (396)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999999999999999988776665544322 1221 23445677899
Q ss_pred hhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc-
Q 048207 98 LGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF- 176 (466)
Q Consensus 98 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~- 176 (466)
.|++.+...+....+..|..+ ++++..+......++|.++++.+++.+.+ .+||.+|++.++..++..+..++
T Consensus 109 ~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~ 182 (396)
T TIGR00882 109 LGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLGSGFALILMLLLMFA 182 (396)
T ss_pred HHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHHHHHHHHHHHHHHHh
Confidence 999888888888888777543 34567778888889999999999988765 46999999988877776554444
Q ss_pred ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccch
Q 048207 177 LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVN 256 (466)
Q Consensus 177 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (466)
.||+|+. ++.++. . +.++++++..+.++.+|++...... +..+.....+.
T Consensus 183 ~~~~~~~--------~~~~~~----~--------------~~~~~~~~~~~~~~~l~~~~~~~~~----l~~~~~~~~~~ 232 (396)
T TIGR00882 183 KPKAPSS--------ATVANA----L--------------GANASAFSLKLALELFRQRKFWMFV----LYVVGVACVYD 232 (396)
T ss_pred CCCCchh--------hhhhcc----c--------------ccccCCCCHHHHHHHHcCCcHHHHH----HHHHHHHHHHH
Confidence 3443320 000000 0 0000111112344444443222111 11111112233
Q ss_pred hHHhhHHHHHhhh----CCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCC
Q 048207 257 IISFYAPVLFRTI----KLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGD 332 (466)
Q Consensus 257 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (466)
....+.+.++++. +.+....+ .......+...++.+..+++.||+++|+.+.++..+.++...+....
T Consensus 233 ~~~~~~~~y~~~~~~~~~~~~~~~g-~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------- 304 (396)
T TIGR00882 233 VFDQQFANFFTSFFATPQQGTRVFG-YVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------- 304 (396)
T ss_pred HHHHHHHHHHHHhccccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-------
Confidence 3334456565443 33333444 66777778888899999999999999999888777666655543322
Q ss_pred CCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHhhcccceeh
Q 048207 333 HGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSI-TVAVGLLFTSLVAQTFLAMLCHFKAGVFF 411 (466)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (466)
.+.+......++.+.+...... ....+..+..|++.++++.+. .+....+++.+++.+.|.+.|..|+...+
T Consensus 305 ------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f 377 (396)
T TIGR00882 305 ------TTALEVVILKMLHAFEVPFLLV-GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAY 377 (396)
T ss_pred ------CChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHH
Confidence 2233333344444443322211 223444566788888887776 56788999999999999999988865555
Q ss_pred hhHHHHHH
Q 048207 412 FFGGWLTV 419 (466)
Q Consensus 412 ~~~~~~~~ 419 (466)
...+++.+
T Consensus 378 ~~~~~~~~ 385 (396)
T TIGR00882 378 LVLGCIVL 385 (396)
T ss_pred HHHHHHHH
Confidence 54444433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=241.66 Aligned_cols=343 Identities=13% Similarity=0.028 Sum_probs=231.9
Q ss_pred ccccccCCc-chhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHH---HHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 26 VSDYCKFDS-QLLTSLTSSLYITGILASLIASSVTRALGGKVSILI---GGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 26 i~~~~~~s~-~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
+.++.+.+. ...++..+++.+.+.++++++|+++||+|||+++.. +.++..+..+.+...+++++++++|+++|++
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~ 121 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIH 121 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444433 457888999999999999999999999999997633 3233333333344458999999999999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCCh
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETP 181 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 181 (466)
.+...|...+++.|++++++|++++++.+++.++|.++||.+++++... .+|++.|+..++..++.++..+++|+++
T Consensus 122 ~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 122 SALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS---GNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred HHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999999999999999999999999999998875 4599999666666666666666777654
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
.. .++.+.+. . ..++ ....++...+++ .++...+..+........+..+
T Consensus 199 ~~--~~~~~~~~--~-------------~~~~----------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 247 (1140)
T PRK06814 199 NA--APDLKIDR--N-------------IIRS----------TITLLKYAKADK----RIWLAILGISWFWLVGAVVLSQ 247 (1140)
T ss_pred CC--CCCCeecc--c-------------hHHH----------HHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHH
Confidence 21 00000000 0 0000 001223333332 2222222222222233455667
Q ss_pred HHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHh-hcCCCC-----
Q 048207 262 APVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAA-QLGDHG----- 334 (466)
Q Consensus 262 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----- 334 (466)
.|.|+++ +|.+....+ .+.+..+++.+++.++.+++.|+..+++.+..+.++..++.+.+.+.... ......
T Consensus 248 ~p~~~~~~~g~~~~~~g-~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 248 LPLLAKETLGGDENVAT-LFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred hHHHHHHHcCCchHHHH-HHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 8888765 688877777 88899999999999999999998887777666655555544433321000 000000
Q ss_pred -CccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 048207 335 -GFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCH 404 (466)
Q Consensus 335 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
-......+...+..++++.+.+....+. ..+..+..|++.||+++|+.+++..++..+++.+.+.+.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGLYIVPL-FAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhHHHH-HHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000223444445555555555555555 56668999999999999999999999999999998888753
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=214.60 Aligned_cols=366 Identities=10% Similarity=0.125 Sum_probs=243.7
Q ss_pred HHHHhhcccccccccCCccccccccCCcch-hHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc
Q 048207 7 PFLKKFFPEVNRKMREDTKVSDYCKFDSQL-LTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA 85 (466)
Q Consensus 7 ~f~~~f~~~~~~~~~~~~~i~~~~~~s~~~-~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~ 85 (466)
+|+.++ +.+.+.. .|.+.+|+|+|+.| .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.+++
T Consensus 36 GF~~e~--R~n~s~a-~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa 112 (511)
T TIGR00806 36 GFMAQF--RPGESFI-TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG 112 (511)
T ss_pred HHHHHh--hchHHHH-HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 445555 4444544 57788999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHH---h
Q 048207 86 FNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLA---M 162 (466)
Q Consensus 86 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~---~ 162 (466)
++++.+.+.|++.|++.|... ....++..|+|+++|+++.++..++..+|.+++++++..+.. +|||+.+. +
T Consensus 113 ~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s----~gWr~y~~Ln~I 187 (511)
T TIGR00806 113 TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT----LGWISYSTLNII 187 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchhHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999988443 56887554 3
Q ss_pred hhHHHHHHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCc---chHHhhhhhhhhH
Q 048207 163 AAAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINH---PFKKIIQRKYRPQ 239 (466)
Q Consensus 163 ~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 239 (466)
......+.+++.+++|..++.+.-++++..+ .....+.....+.+. .+ .....+..... .+..-++..++++
T Consensus 188 sl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~-~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~~~y~n~ 262 (511)
T TIGR00806 188 SLVFMTFSVFLALFLKRPKRSLFFNRLEDVR-GALPCELDQMVPGPG--GK--LEDYLGTCRDSFLVRMLSELVTIYRNP 262 (511)
T ss_pred HHHHHHHHHHHHHhCCCCchhhhhccccccc-cccccccccCCCCCc--cc--cchhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 3334445566777888665544433221110 000000000000000 00 00000000001 1122223444555
Q ss_pred HHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCc-chhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHH
Q 048207 240 LVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSE-NTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVS 318 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 318 (466)
.++...++.....++++.+..|...+.++..-+. ...+ ..-.+..+.+.+.++..|++-.+..+-..+.++.....-+
T Consensus 263 ~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG-~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~ 341 (511)
T TIGR00806 263 QLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNG-AVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQA 341 (511)
T ss_pred chhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCC-HHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH
Confidence 6666666667777778888888888877664432 2344 5666667777788888888855553322233222222222
Q ss_pred HHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 048207 319 QVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTF 398 (466)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 398 (466)
.+++... ..++.|...+..+++...+.+........+ +.....+.-|..+|+++++.-+...+...+.
T Consensus 342 gll~~m~-----------~t~~Iw~~Y~~yvlf~~~y~flitia~~~i-A~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 342 GLVFWMS-----------QSHDIWVLYVTYVLFRGIYQFLVPIATFQI-ASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred HHhhhhh-----------cccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 2222111 225577777777787777766555443444 4556666778999998887777665555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-27 Score=222.12 Aligned_cols=386 Identities=16% Similarity=0.182 Sum_probs=272.8
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHH-HHHhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFG-RLLLGVG 101 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~-r~l~G~~ 101 (466)
.++++++++.+.++.+|+.++......+..++.+.+.||+|.|++.+.|.++..++.++.+|++++|++++. -++.|+|
T Consensus 69 ~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G 148 (509)
T KOG2504|consen 69 FEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLG 148 (509)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcc
Confidence 567789999999999999999999999999999999999999999999999999999999999999988884 5899999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc-cCC
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL-PET 180 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~es 180 (466)
.|..+....+.+..+|+ ++|+.+.|+...+.++|.++-|.+...+.+. +|||..+++.+.+.+-..+....+ |.+
T Consensus 149 ~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~---~G~r~~~l~~~~~~l~~~~~~~~~rp~~ 224 (509)
T KOG2504|consen 149 LGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSK---YGWRGALLIFGGISLNVLVAGALLRPLS 224 (509)
T ss_pred chhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999998886 6699999999999999988888877666664 569999998887776655554444 323
Q ss_pred hhhhhhcCCcHHHHHHHHH-------HHhCc-c--chH---HHHHHHHHHhhccccCCcchHHhh----hhhhhhHHHHH
Q 048207 181 PNSIIQRTNDHQKAEKMLQ-------RVHGT-A--DVQ---AELEDLIRASSDSKNINHPFKKII----QRKYRPQLVMA 243 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~-------~~~~~-~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 243 (466)
++....+.++.+...+..+ +.... + ..+ .+.+..++...+.+ ..+.+..+ .+..+.+.++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~ll~~~~fl~ 302 (509)
T KOG2504|consen 225 PPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWR--NSPLQAFLSMLDLSLLKDPKFLL 302 (509)
T ss_pred cCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccc--ccchhhhhhhhhHHHHcCchHHH
Confidence 2210000000000000000 00000 0 000 00000000000000 00111111 12333456666
Q ss_pred HHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeee--ehhhhHHHHHHHHH
Q 048207 244 ILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVL--FLLGGIQMLVSQVM 321 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~--~~~~~~~~~~~~~~ 321 (466)
+.+...+...++.....++|.+.+..+++..+.. ...+..++..++++++.|++.|+...++. ..++.+..+++...
T Consensus 303 ~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa-~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~ 381 (509)
T KOG2504|consen 303 LALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAA-FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLF 381 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhH-HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence 6677777777788888999999999999999999 99999999999999999999999874443 33344444444322
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 048207 322 IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAM 401 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (466)
.... ...+..+....+++.+.+. +..+...++.|+.+.+.-..+.|+...+..++..++|++.|.+
T Consensus 382 ~p~~-------------~~~~~l~~~~~~fG~~~g~-~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~ 447 (509)
T KOG2504|consen 382 LPFA-------------TTYVGLIVFSILFGFCVGS-FSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLL 447 (509)
T ss_pred HHHh-------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceee
Confidence 2222 2223444444444444443 3344445667999999999999999999999999999999999
Q ss_pred Hhhcc-cceehhhHHHHHHHHHhhheecc
Q 048207 402 LCHFK-AGVFFFFGGWLTVMTTFVHFFLP 429 (466)
Q Consensus 402 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 429 (466)
.|..+ +...+.+..++.+.+...++..+
T Consensus 448 ~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 448 YDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99888 77788888888888777776666
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=201.69 Aligned_cols=334 Identities=15% Similarity=0.040 Sum_probs=235.8
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhh
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGN 106 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 106 (466)
.++.+-+++++|++.+++.+.+.+.+++.|.+.||+|+|..+++|+.++..+++++++.++++.++++|.+||+|.++..
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhcCCCcc-cCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChhhhh
Q 048207 107 QSVPLYLSEMAPPKC-RGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPNSII 185 (466)
Q Consensus 107 ~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~ 185 (466)
+...++++|.+|+++ |++++|+...+.++|.++||.+|+.+.+..+ .+.+|++.++++++...+.+++-|..+
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G---k~aPFlVL~~v~Lld~~L~l~vi~p~~--- 251 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG---KSAPFLVLAIVLLLDGALQLLVIEPTE--- 251 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC---CcCcHHHHHHHHHHHHHHHHheeCccc---
Confidence 999999999999655 7999999999999999999999999999765 999999999999987777666433211
Q ss_pred hcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHH
Q 048207 186 QRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVL 265 (466)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (466)
.+ +++..+..+++++++++... .......++ ........--.+.+
T Consensus 252 --~~-----------------------------~~~~~~~~~~~~Ll~dP~I~---~~agai~~~-n~~lafLePtlslw 296 (464)
T KOG3764|consen 252 --MD-----------------------------PDSTEQGTPMWSLLMDPYIL---LIAGAITFS-NSSLAFLEPTLSLW 296 (464)
T ss_pred --cC-----------------------------ccccccCccHHHHHhCchHh---hhhcchhhc-cchHHHhCcccHHH
Confidence 00 00111234566666554322 212222221 11222222333343
Q ss_pred H-hhhCCCcc-hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeeh--hhhHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 048207 266 F-RTIKLSEN-TSLLMSALVTGGIGTVSAILPMILADKLGRKVLFL--LGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYA 341 (466)
Q Consensus 266 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (466)
+ ++.. ++. +.+ ..+....+...++..+.|.+.||++..+.+. .+.+..+.+.....+.. .....
T Consensus 297 m~e~m~-~p~w~~G-~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~----------~~~~L 364 (464)
T KOG3764|consen 297 MLETMF-TPGWEVG-LAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT----------SIAQL 364 (464)
T ss_pred HHHhcc-CCCccee-eeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh----------hHHHH
Confidence 3 4444 444 444 7778888999999999999999999544333 22222232222222221 11223
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccc---chhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhH
Q 048207 342 YLILVLICVYKAGFGFSWGPLGWLVPSEIFPLE---IRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFG 414 (466)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (466)
+......++.+........|....+ .|....+ ..|...++......++.+++|.+.|.+.+..|+.+.....
T Consensus 365 ~vp~~~l~~~i~~~dasl~P~l~~l-vd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii 439 (464)
T KOG3764|consen 365 WVPNFGLGFGIGLADASLIPTLGYL-VDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII 439 (464)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhHHh-cchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence 3333344444444444444442222 3444434 6688899999999999999999999999999965544333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-25 Score=209.49 Aligned_cols=345 Identities=13% Similarity=0.103 Sum_probs=245.8
Q ss_pred ccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc-----cchhHHHHHHHHhhhhhhh
Q 048207 30 CKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA-----FNIYMLIFGRLLLGVGIDF 104 (466)
Q Consensus 30 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~ 104 (466)
..-|+...+++..+..+...+.++++|.++||++||++++.+..+.++..+..++. .+.+.+++.-++.|++.+.
T Consensus 40 lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~ 119 (524)
T PF05977_consen 40 LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAF 119 (524)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence 34478899999999999999999999999999999999999988776655544432 4788999999999999999
Q ss_pred hhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChhhh
Q 048207 105 GNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPNSI 184 (466)
Q Consensus 105 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~ 184 (466)
..|...+++.|..|+++...+.++.+...++..++||.+++.+.... |-.+.|.+.++..++.+.....++..++
T Consensus 120 ~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~---G~~~~f~inalsfl~~i~~l~~~~~~~~-- 194 (524)
T PF05977_consen 120 FNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF---GAAAAFLINALSFLISILALLRWKPPPP-- 194 (524)
T ss_pred HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcccccc--
Confidence 99999999999999999999999999999999999999999887653 3667888777655554443333332211
Q ss_pred hhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHH
Q 048207 185 IQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPV 264 (466)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (466)
+++..+| +.. ++. +..++-..+++..+..+....+. ..........+|.
T Consensus 195 --~~~~~~e--~~~-------------~~l----------~~G~ryv~~~~~l~~~l~~~~~~----~l~~~a~~aLlPl 243 (524)
T PF05977_consen 195 --PSSLPRE--RFF-------------SAL----------REGLRYVRSSPPLRSVLLRSFLF----NLFASAVWALLPL 243 (524)
T ss_pred --ccccchh--hhh-------------hhH----------HHHHHHHhcchHHHHHHHHHHHH----HHhhhHHHHhhhH
Confidence 0000000 000 000 11111121122212222111111 1122333445677
Q ss_pred HHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHH
Q 048207 265 LFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYL 343 (466)
Q Consensus 265 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (466)
+.+ .++.++...+ ++....+++.++|+++.+++.+|+++++.+..+.++.+++++.+++. ++.+.
T Consensus 244 ~a~~~l~~~a~~yG-ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------------~~~~~ 309 (524)
T PF05977_consen 244 FARDVLGGGASGYG-LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------------PSFWL 309 (524)
T ss_pred HHHHHhCCcHHHHH-HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------------hHHHH
Confidence 764 5677777777 89999999999999999999999999888888887777776666554 33455
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHHHHh
Q 048207 344 ILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMTTF 423 (466)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (466)
.....++.+.+........ .+...+..|++.||+++++.++....+..++..+.|.+.+..|....+..++++.+++.+
T Consensus 310 ~~~~l~l~G~~~~~~~~~~-~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 310 ALIALFLAGAAWIIANSSL-NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 5555566666655544444 455589999999999999999999999999999999999999866555555555444444
Q ss_pred hh
Q 048207 424 VH 425 (466)
Q Consensus 424 ~~ 425 (466)
+.
T Consensus 389 ~~ 390 (524)
T PF05977_consen 389 IA 390 (524)
T ss_pred HH
Confidence 33
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=187.36 Aligned_cols=336 Identities=17% Similarity=0.093 Sum_probs=255.7
Q ss_pred CCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 22 EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 22 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
..++|++|+|+|.+..|++.++..+...+.+++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|.|
T Consensus 34 LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~g 112 (395)
T COG2807 34 LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAG 112 (395)
T ss_pred hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhh
Confidence 3577899999999999999999999999999999999999999999999999999999999887 888999999999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCCh
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETP 181 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 181 (466)
.+......+.++.+.|| |+-+..++++....++|..+++.++..+.+.. .+||....+-++++++.++.++.-. .
T Consensus 113 Iav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~WlPq~--~ 187 (395)
T COG2807 113 IAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIWLPQA--L 187 (395)
T ss_pred HHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHHhhhc--c
Confidence 99999999999999998 55899999999999999999999988887765 3699999998888888777665421 1
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
|.. . . ..+....+..+++|+ +..+...+++..+...+|....|
T Consensus 188 r~~----~-~----------------------------~~~~~~~~~~~vw~~----~~aW~vtLfmGlqS~~~Y~~~~W 230 (395)
T COG2807 188 REQ----A-A----------------------------SIATKLVSVRKVWRS----PLAWQVTLFMGLQSLLYYIVIGW 230 (395)
T ss_pred ccc----c-c----------------------------ccccccccccccccC----chhHHHHHHHHhhHHHHHHHHHH
Confidence 100 0 0 000001112223333 44455556666666678999999
Q ss_pred HHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcC-CeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 262 APVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLG-RKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
+|.++.+.|++.++++ .+.+...+.+++.++....+.+|.+ +|+.......++.++...+.+. |.+.
T Consensus 231 LP~ili~~G~sa~~aG-~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~-----------P~~~ 298 (395)
T COG2807 231 LPAILIDRGLSAAEAG-SLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA-----------PGQL 298 (395)
T ss_pred HHHHHHHcCCCHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-----------hhhH
Confidence 9999999999999999 8999999999999999999999755 4455555555556666555544 2233
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cceehhhHH
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK-AGVFFFFGG 415 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 415 (466)
.+.. .++.+.+.+..++-....+....-.++..+.-.|+.+.++++..+.+|.++|.+.|..| +...+...+
T Consensus 299 ~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~ 371 (395)
T COG2807 299 PILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLA 371 (395)
T ss_pred HHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHH
Confidence 3322 34444444443333222332334445666777999999999999999999999999988 443333333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=192.88 Aligned_cols=348 Identities=12% Similarity=0.070 Sum_probs=256.1
Q ss_pred cccCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhh---hccchhHHHHHH
Q 048207 19 KMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGG---SAFNIYMLIFGR 95 (466)
Q Consensus 19 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r 95 (466)
.+...|++++.|++|..|.+++..+++.|+.+.+++.|++.+|+|+|+.+++|+.++++++.+.. -..+|..++.+-
T Consensus 32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~l 111 (422)
T COG0738 32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVAL 111 (422)
T ss_pred chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 34457999999999999999999999999999999999999999999999999999999999984 567899999999
Q ss_pred HHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC----------------CCcchHHH
Q 048207 96 LLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK----------------GGWGWKIS 159 (466)
Q Consensus 96 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----------------~~~~wr~~ 159 (466)
++.|.|.+...+.+..+++...++++..+.+.+.+..+++|.+++|++++.+.... ....||++
T Consensus 112 Fila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~p 191 (422)
T COG0738 112 FILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFP 191 (422)
T ss_pred HHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999988899999999999999999999988765520 00237888
Q ss_pred HHhhhHHHHHHHHHhhc--ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhh
Q 048207 160 LAMAAAPASILTIGSLF--LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYR 237 (466)
Q Consensus 160 f~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (466)
|...+...+++.+.... .|+.+.- +. ++.+..+....+.++.+..
T Consensus 192 Yl~~~~~lvll~v~~~~~k~p~~~~~---------~~------------------------~~~~~~~~~~~~l~~~~~~ 238 (422)
T COG0738 192 YLILAGLLVLLAVLILLSKLPDLQVA---------AP------------------------SLGASGSAGLSSLFQNKHL 238 (422)
T ss_pred HHHHHHHHHHHHHHHHhccCCcCCcc---------cc------------------------cccccccchHHHHHhChHH
Confidence 88877666555544433 3443210 00 0000001133445544433
Q ss_pred hHHHHHHHHHHHHhcccchhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHH
Q 048207 238 PQLVMAILIPFFQQVTGVNIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQML 316 (466)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 316 (466)
+ ...+..+++.........|.+.|+.+ .|.+..++. ...+....+.++|++++.++..|+...|.+.+..++..
T Consensus 239 ~----~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa-~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~i 313 (422)
T COG0738 239 R----LGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAA-YYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAI 313 (422)
T ss_pred H----HHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3 34444444555566777888888877 777887877 88999999999999999999999999998887766665
Q ss_pred HHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHH
Q 048207 317 VSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQ 396 (466)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~ 396 (466)
+.++...+.. ....+....+.+...+..++.+ +....+..| ++ ....|.......+|+++.|+
T Consensus 314 ll~~~~~l~~--------------g~v~~~~l~~ig~F~simfPTI-fslal~~l~-~~-ts~~s~~l~maivGGAiiP~ 376 (422)
T COG0738 314 LLLLAVALIG--------------GVVALYALFLIGLFNSIMFPTI-FSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPP 376 (422)
T ss_pred HHHHHHHHhc--------------ChHHHHHHHHHHHHhHHHHHHH-HHHHHhccC-cc-ccccceeeeeheecchHHHH
Confidence 5555554441 1334444455555555555555 666667788 33 33444445567788999999
Q ss_pred HHHHHHhhcccceehh-hHHHHHHHH
Q 048207 397 TFLAMLCHFKAGVFFF-FGGWLTVMT 421 (466)
Q Consensus 397 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 421 (466)
+.|++.|+.+...... ....|.+..
T Consensus 377 l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 377 LQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999998544333 344444433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=206.88 Aligned_cols=359 Identities=12% Similarity=0.026 Sum_probs=222.2
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh-hcchHHHHHHHHHHHHHHhhhhhccchhH-HHHHHHHhhhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRA-LGGKVSILIGGVAFLAGSALGGSAFNIYM-LIFGRLLLGVGID 103 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~-l~~~r~l~G~~~g 103 (466)
+++++|++.++.+++.+.+.....+..+++|+++|| +||||++.++.+++.++.++++++++... ++++|+++|+|.|
T Consensus 41 l~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g 120 (489)
T PRK10207 41 FVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNG 120 (489)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccc
Confidence 467899999999999999999999999999999999 99999999999999999999999877554 5589999999999
Q ss_pred hhhhhhhHHHHhcCCCcc--cCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCCh
Q 048207 104 FGNQSVPLYLSEMAPPKC--RGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETP 181 (466)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 181 (466)
...+...+++.|.+|+++ |++++++++.+.++|..+||.+++++.+.. |||+.|++.++..++.++...+.++..
T Consensus 121 ~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~---gw~~~F~i~~i~~~~~~~~~~~~~~~~ 197 (489)
T PRK10207 121 LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF---GYSVTYNLCGAGLIIALLVYFACRGMV 197 (489)
T ss_pred cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 999999999999998774 577999999999999999999999998764 599999987654333333333333221
Q ss_pred hhhh--hcCCcHHHHHHHH------------HHHhCccchHHHHHHH----HH--HhhccccCCcchHHhhhhhhhhHHH
Q 048207 182 NSII--QRTNDHQKAEKML------------QRVHGTADVQAELEDL----IR--ASSDSKNINHPFKKIIQRKYRPQLV 241 (466)
Q Consensus 182 ~~~~--~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (466)
+... .++++.|.....+ .......+........ .. -..++.+. .+.+|+ +.+
T Consensus 198 ~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~----~~~~r~----r~~ 269 (489)
T PRK10207 198 KDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL----DKTGRN----KMF 269 (489)
T ss_pred cccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHH----HHH
Confidence 1000 0000011100000 0000000000000000 00 00000000 022222 221
Q ss_pred HHHH--HHHHHhcccchhHHhhHHHHHhh-hC-----CCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeee------
Q 048207 242 MAIL--IPFFQQVTGVNIISFYAPVLFRT-IK-----LSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVL------ 307 (466)
Q Consensus 242 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~------ 307 (466)
.... +.....+..+.......+.+.++ .+ +... .. .+.....+..++.+++.+++.||+++|+.
T Consensus 270 ~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~-~~-~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~ 347 (489)
T PRK10207 270 VAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSIN-PV-SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPM 347 (489)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEEC-HH-HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHH
Confidence 1111 11222222233333444444442 22 2211 12 34445556676788888999999998874
Q ss_pred -ehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHH
Q 048207 308 -FLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAV 386 (466)
Q Consensus 308 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 386 (466)
+.++.++.+++++.+........... ...+.++.+....+.+.+.....++. ...+.+..|++.++.++|+.+..
T Consensus 348 k~~~G~~l~~~~~~~~~~~~~~~~~~~---~~~s~~~~i~~~~l~g~Ge~~~~~~g-~~~~~~~aP~~~~g~~~g~~~l~ 423 (489)
T PRK10207 348 KFTLGMFLCSLGFLTAAAAGMWFADAQ---GLTSPWFIVLVYLFQSLGELFISALG-LAMIAALVPQHLMGFILGMWFLT 423 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC---CccCHHHHHHHHHHHHHHHHHHhHHH-HHHHHHhChHHHHHHHHHHHHHH
Confidence 66666666666554432211110000 11234445556666666666555554 55556889999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 048207 387 GLLFTSLVAQTFLAM 401 (466)
Q Consensus 387 ~~~~~~~~~~~~~~~ 401 (466)
..+|+.++..+....
T Consensus 424 ~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 424 QAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888777544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=206.37 Aligned_cols=358 Identities=12% Similarity=0.067 Sum_probs=223.0
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc------cchhHHHHHHH
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA------FNIYMLIFGRL 96 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~------~~~~~l~~~r~ 96 (466)
.|.+++++|+|..+.+++.++. ....+++++.|+++||+|||+++.++.+++.++.++++++ ++++.+++.|+
T Consensus 50 s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~ 128 (591)
T PTZ00207 50 SGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNG 128 (591)
T ss_pred HHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 5678999999999999998874 4456778889999999999999999999999999999997 68999999999
Q ss_pred HhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHH-HHHHhhhhcccCCCcchHHHHHhhhHHHHHHH-HHh
Q 048207 97 LLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILS-ANLLNYGTQKIKGGWGWKISLAMAAAPASILT-IGS 174 (466)
Q Consensus 97 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~ 174 (466)
+.|+|.+...+.....+.+|+| ++||++.++...+.++|.++ +++...++. .+|+..|++.+++.++.. +..
T Consensus 129 l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 129 LMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALVVGILAI 202 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 77999999999999999875 555555543 248888888777666544 333
Q ss_pred hcc--cCChhhhhhcCCcHHHHHHHHHHHhCc--------------------------------------cchH-HHHHH
Q 048207 175 LFL--PETPNSIIQRTNDHQKAEKMLQRVHGT--------------------------------------ADVQ-AELED 213 (466)
Q Consensus 175 ~~~--~es~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~-~~~~~ 213 (466)
.++ |+.|++..++++ .++.++..++..+. ++.. .....
T Consensus 203 ~~vr~p~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~ 281 (591)
T PTZ00207 203 VFMRLPPFHLTGYQEKH-LDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAV 281 (591)
T ss_pred hheeCCcchhhcccccC-CCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 444 444554433322 22222221111000 0000 00000
Q ss_pred --H------H--------------H-H---------h-----hcccc-------C-C-cchHHhhhhhhhhHHHHHHHHH
Q 048207 214 --L------I--------------R-A---------S-----SDSKN-------I-N-HPFKKIIQRKYRPQLVMAILIP 247 (466)
Q Consensus 214 --~------~--------------~-~---------~-----~~~~~-------~-~-~~~~~~~~~~~~~~~~~~~~~~ 247 (466)
. . + + + .+++. + . ....+.+.....+.-+|++++.
T Consensus 282 v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~ 361 (591)
T PTZ00207 282 TVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWS 361 (591)
T ss_pred HHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHH
Confidence 0 0 0 0 0 00000 0 0 0000112122223334445555
Q ss_pred HHHhcccchhHHhhHHHHHhhh-CCCcch--hhHHHHHHHHHHHHHhhhhhhhhhhhcCCee----e----ehhhhHHHH
Q 048207 248 FFQQVTGVNIISFYAPVLFRTI-KLSENT--SLLMSALVTGGIGTVSAILPMILADKLGRKV----L----FLLGGIQML 316 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~----~----~~~~~~~~~ 316 (466)
.++..+....+...+.++.+.+ |.+.+. .. .+.++.++++.+|++..|++.....+|+ . .+....++.
T Consensus 362 ~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~-~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~ 440 (591)
T PTZ00207 362 IFCCVGAHFVIIFNARFIYTALAGEAPDDALNT-LLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCI 440 (591)
T ss_pred HHHhhCchheeeecHHHHHHHhcCCCCCcccee-eehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHH
Confidence 5555555566667777888887 663433 33 3678889999999999998873322222 1 111111133
Q ss_pred HHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHH-H
Q 048207 317 VSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLV-A 395 (466)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~-~ 395 (466)
++.+++.+.. + .....+..++.+.+++..+... ...++|+|. ++-|+-.-+.....-+|+.+. .
T Consensus 441 ~~~lll~~~~----------p---~~~L~~~~~lvg~~~G~~~~~~-~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~ 505 (591)
T PTZ00207 441 ITMLTLFLTL----------P---KAALPLPYFIAAFANGFMAATI-ALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNR 505 (591)
T ss_pred HHHHHHHHHC----------C---ccHhHHHHHHHHHHhhHhHHHH-HHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHH
Confidence 3333333221 1 1345555666666766666655 555589999 777777666666666666555 4
Q ss_pred HHHHHHHhh
Q 048207 396 QTFLAMLCH 404 (466)
Q Consensus 396 ~~~~~~~~~ 404 (466)
.+.|.++|+
T Consensus 506 ~l~G~~Yd~ 514 (591)
T PTZ00207 506 LLYGEWYTQ 514 (591)
T ss_pred HHHHHHHHH
Confidence 566777764
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=200.18 Aligned_cols=382 Identities=9% Similarity=-0.002 Sum_probs=233.9
Q ss_pred ccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh-hcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhh
Q 048207 30 CKFDSQLLTSLTSSLYITGILASLIASSVTRA-LGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQS 108 (466)
Q Consensus 30 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 108 (466)
+|+|..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.++++|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCcc---cCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhccc----CCh
Q 048207 109 VPLYLSEMAPPKC---RGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLP----ETP 181 (466)
Q Consensus 109 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~----es~ 181 (466)
..++++|++|+++ |++++++.+.+.++|.++||.+++.+.+. .+||+.|.+.++..++..+..++.+ +.|
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIG 199 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHHcccccccCC
Confidence 9999999998764 88899999999999999999999988764 4699999988765554444433332 222
Q ss_pred hhhhhcCCcHHHHHHHHHHH---------------hCccchHHHHHH------HHHHhhccccCCcchHHhhhhhhhhHH
Q 048207 182 NSIIQRTNDHQKAEKMLQRV---------------HGTADVQAELED------LIRASSDSKNINHPFKKIIQRKYRPQL 240 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (466)
+. .++.+.++.+...... ...+........ .........+.+ ..+.-++ +...
T Consensus 200 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~ 273 (475)
T TIGR00924 200 SV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPR--LDAVARN--KMYA 273 (475)
T ss_pred CC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHh--HHHH
Confidence 10 0000011100000000 000000000000 000000000000 0000011 1111
Q ss_pred HHHHHHHHHHhcccchhHHhhHHHHHhh-hCCCc----chhhHHHHHHHHHHHHHhhhhhhhhhhhcCC-----eeee--
Q 048207 241 VMAILIPFFQQVTGVNIISFYAPVLFRT-IKLSE----NTSLLMSALVTGGIGTVSAILPMILADKLGR-----KVLF-- 308 (466)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-----~~~~-- 308 (466)
.+...+.....+..+.......+.+.++ .+.+. -... ++.++..+..++.+++..++..|++| +...
T Consensus 274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~-~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVI-WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHH-HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 2222222222223333444444544433 22221 1133 56677777777777665544344433 2323
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHH
Q 048207 309 LLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGL 388 (466)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 388 (466)
.++.++.++++..+.+..... + .....+.++.+....+.+.+.....+.. ..+..+..|++.||+.+|+......
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~--~--~~~~~s~~~~i~~~~~~~~ge~~~~p~~-~~~~~~~aP~~~~g~~~g~~~l~~~ 427 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFA--D--AGGLTSPWFMVLIYLFQTLGELMISPLG-LSWWTKIAPQRLMGQMLGMWFLAQA 427 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--C--CCCccCHHHHHHHHHHHHHHHHHHhHHH-HHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 556666666666655432111 0 0012345556666666666665544444 6677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccceehh-hHHHHHHHHHhhhe
Q 048207 389 LFTSLVAQTFLAMLCHFKAGVFFF-FGGWLTVMTTFVHF 426 (466)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 426 (466)
+|..+++.+.....+..++...+. ....+.+.+++.++
T Consensus 428 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 428 MGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 999999888877666555433333 33333333333333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=218.65 Aligned_cols=287 Identities=17% Similarity=0.138 Sum_probs=203.4
Q ss_pred CCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc---------------
Q 048207 22 EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF--------------- 86 (466)
Q Consensus 22 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--------------- 86 (466)
..+.++++|+++..+.|++.+.+.++++++.++.++++||+|||+++.++.++++++++++++.+
T Consensus 55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~ 134 (633)
T TIGR00805 55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSST 134 (633)
T ss_pred hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccc
Confidence 36889999999999999999999999999999999999999999999999999999999988763
Q ss_pred ------------------------------------chhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHH
Q 048207 87 ------------------------------------NIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQ 130 (466)
Q Consensus 87 ------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 130 (466)
.+..++++|+++|+|.+..++...+++.|++|+++|+++++++.
T Consensus 135 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~ 214 (633)
T TIGR00805 135 GNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILE 214 (633)
T ss_pred ccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHH
Confidence 24567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCc-------------------chHHHHHhhhHHHHHHHHHhhcccCChhhhhhcCCcH
Q 048207 131 VCVATGILSANLLNYGTQKIKGGW-------------------GWKISLAMAAAPASILTIGSLFLPETPNSIIQRTNDH 191 (466)
Q Consensus 131 ~~~~~G~~~~~~~~~~~~~~~~~~-------------------~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~ 191 (466)
.+..+|.++|+++++.+.+...++ +||..|++.+++.++..+.++++|++.+....+.+ .
T Consensus 215 ~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~-~ 293 (633)
T TIGR00805 215 SIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVN-V 293 (633)
T ss_pred HHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccc-h
Confidence 999999999999998877542111 37888888888777766656666654311000000 0
Q ss_pred HHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHHHh-hhC
Q 048207 192 QKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFR-TIK 270 (466)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 270 (466)
++.++. ......+. .. .+.........+.++...+++.++...+..+.....++.+..|.|.|++ +++
T Consensus 294 ~~~~~~--~~~~~~~~--~~-------~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g 362 (633)
T TIGR00805 294 DVHETE--KLEKSEDK--SR-------KKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYG 362 (633)
T ss_pred hhhhhh--cccccccc--cc-------hhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000000 00000000 00 0000000111122223333445555555555555667788889999986 578
Q ss_pred CCcchhhHHHHHHHHH-HHHHhhhhhhhhhhhcCC--eeeehhhhHHHHHHHHH
Q 048207 271 LSENTSLLMSALVTGG-IGTVSAILPMILADKLGR--KVLFLLGGIQMLVSQVM 321 (466)
Q Consensus 271 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~ 321 (466)
+++.+++ .+.....+ +.+++.+++|+++||++. |+.+.++.++..++.++
T Consensus 363 ~s~~~ag-~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 363 ISSAEAN-FLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred CcHHHHH-HHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 8888887 66655554 568899999999999884 45666665555555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-23 Score=193.97 Aligned_cols=356 Identities=13% Similarity=0.107 Sum_probs=218.1
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.+.|..|+|-+ ....|+.+...++.+++.++.|+++|.||||++++.+.++..+|+++++.++|...++++..+.|+|.
T Consensus 67 l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvga 145 (599)
T PF06609_consen 67 LPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGA 145 (599)
T ss_pred HHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhh
Confidence 35677788754 66789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh-hc-ccCC
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS-LF-LPET 180 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~-~~es 180 (466)
|... .....++|..|.|.|....++...........++.++..+... .+|||.|++.++...+.++.. ++ .|++
T Consensus 146 G~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~---~~WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 146 GVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH---SGWRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred HHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC---CCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 7665 4566689999999998777766665555555666666555433 469999999888766544332 22 3333
Q ss_pred hhhhhhcCCcHHHHHHHHHHHh---------------------Ccc----chHHHHHHHHH--------H-hhccc--cC
Q 048207 181 PNSIIQRTNDHQKAEKMLQRVH---------------------GTA----DVQAELEDLIR--------A-SSDSK--NI 224 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~----~~~~~~~~~~~--------~-~~~~~--~~ 224 (466)
.+ ..++++. ..++.++++. +.. +..+....+.- . -|... +.
T Consensus 222 ~~--~~~~~~~-s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~ 298 (599)
T PF06609_consen 222 RA--QLHGRKL-SKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKD 298 (599)
T ss_pred hh--hhccccC-cHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCC
Confidence 21 1111111 1111122221 000 00000000000 0 01101 11
Q ss_pred CcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHHH-hhhCCCcc---hhhHHHHHHHHHHHHHhhhhhhhhhh
Q 048207 225 NHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLF-RTIKLSEN---TSLLMSALVTGGIGTVSAILPMILAD 300 (466)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d 300 (466)
+.-..+++|+. +.+....+..+.....++....+.|... ..++.+.. ..+ +.....+.+..++.++.+.+..
T Consensus 299 Pl~P~~Lf~~~---r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~-~~s~~~~fg~~~g~~i~g~l~~ 374 (599)
T PF06609_consen 299 PLFPHRLFKDR---RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIG-WISSPVGFGSCAGAVILGLLFS 374 (599)
T ss_pred CcCCHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceee-hhhhhHHHHHHHHHHHHHHHHH
Confidence 11123444432 2233333333333223444444445443 33444432 334 6677788888889999999999
Q ss_pred hcCCeeee-hhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhh
Q 048207 301 KLGRKVLF-LLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAG 379 (466)
Q Consensus 301 ~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~ 379 (466)
+++|-|.. +++..++.++..++.... + ++....+...++.+.+.+....+. ...+.-..|++.-+++
T Consensus 375 ~ir~~Kw~li~~~~~~ta~~Gama~~~----------~-~n~~~~i~~~~l~g~giG~~~~~~-~~~~ql~~p~~~ig~a 442 (599)
T PF06609_consen 375 KIRHIKWQLIFGSVLMTAFCGAMAAVR----------P-DNKNAAIAFLVLAGFGIGGILVPA-IVIAQLIVPDEDIGTA 442 (599)
T ss_pred HccchhHHHHHHHHHHHHHHHHHHHcc----------C-CCcchHHHHHHHHHHhHHHHHHHH-HHeeEeeeCchHHHHH
Confidence 88876554 455444444333333221 1 111122333334444444433333 4444567888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 048207 380 QSITVAVGLLFTSLVAQTFLAML 402 (466)
Q Consensus 380 ~g~~~~~~~~~~~~~~~~~~~~~ 402 (466)
.|+..+++.+|+.++..++..+.
T Consensus 443 ~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 443 TGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999988887655
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=198.13 Aligned_cols=339 Identities=17% Similarity=0.091 Sum_probs=211.6
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhh----hhcc-hHHHHHHHHHHHHHHhhhhhccc------hhHHHHHH
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTR----ALGG-KVSILIGGVAFLAGSALGGSAFN------IYMLIFGR 95 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~~~l~~~r 95 (466)
.+.+|++..++|.+..+..+..++..|+.|+++| |+|| |+.++++....+++..++...++ ++.+++..
T Consensus 34 t~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~ 113 (473)
T PRK10429 34 TDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTY 113 (473)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 5667999999999999999999999999999999 6698 56667788887887666644332 34566677
Q ss_pred HHhhhhhhhhhhhhhHHHHhcC-CCcccCchhhHHHHHHHHHHHHHHHHhhhhccc----CCCcchHHHHHhhhHHHHHH
Q 048207 96 LLLGVGIDFGNQSVPLYLSEMA-PPKCRGAFNIGFQVCVATGILSANLLNYGTQKI----KGGWGWKISLAMAAAPASIL 170 (466)
Q Consensus 96 ~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~wr~~f~~~~~~~~~~ 170 (466)
++.+++.....+...++..|.. ++++|.+..++...+.++|..+.+.+...+... ....+|+....+.++..++.
T Consensus 114 ~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~ 193 (473)
T PRK10429 114 ILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVS 193 (473)
T ss_pred HHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 7778888888888899999999 588999999987777777755555443322111 11135887777777666554
Q ss_pred HHH-hhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHH
Q 048207 171 TIG-SLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFF 249 (466)
Q Consensus 171 ~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (466)
.+. .+..+|.+.. ++ ++ .+++++.+.++.++...+++.+.......+
T Consensus 194 ~~~~~~~~~e~~~~----~~--~~--------------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~ 241 (473)
T PRK10429 194 TIITLRNVHEVYSS----DN--QV--------------------------SAEGSHLTLKDIVALIYKNDQLSCLLGMAL 241 (473)
T ss_pred HHHHHcCceecCCc----cc--cc--------------------------cccccCCCHHHHHHHHhcCHHHHHHHHHHH
Confidence 433 3446664310 00 00 000012233333332222222222222222
Q ss_pred HhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhh
Q 048207 250 QQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQ 329 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (466)
...........+.+++.+....+..... .......++.+++.++.+++.||+|+|+.+.++..+..++.+.+......
T Consensus 242 ~~~~~~~~~~~~~~y~~~y~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~- 319 (473)
T PRK10429 242 AYNIASNIINGFAIYYFTYVIGDADLFP-YYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA- 319 (473)
T ss_pred HHHHHHHHHhhheeeEEEEECCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 2222334444444545444333333333 55566668889999999999999999999887776655554444322100
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHhhhcccccccccccccccc-------ccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048207 330 LGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFP-------LEIRSAGQSITVAVGLLFTSLVAQTFLAML 402 (466)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 402 (466)
+....+..++...+.+.+.+.... ..+.+.+|..+ .+..|..+|....+..++..+++.+.|.+.
T Consensus 320 -------~~~~~~~~~i~~~l~g~~~~~~~~-~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 320 -------APHNALLIVIAGILLNIGTALFWV-LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred -------CchhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233344444444444444433 33555577755 334566789999999999999999999998
Q ss_pred hhccc
Q 048207 403 CHFKA 407 (466)
Q Consensus 403 ~~~~~ 407 (466)
+..|+
T Consensus 392 ~~~Gy 396 (473)
T PRK10429 392 GLIGY 396 (473)
T ss_pred HHcCC
Confidence 86664
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=190.25 Aligned_cols=352 Identities=9% Similarity=-0.088 Sum_probs=221.5
Q ss_pred CccccccccCCcchhHHH--HHhhhHHHHHHHHhH-HhhhhhhcchHHHHHHHHHH-HHHHhhhh---hccc-hhHHHHH
Q 048207 23 DTKVSDYCKFDSQLLTSL--TSSLYITGILASLIA-SSVTRALGGKVSILIGGVAF-LAGSALGG---SAFN-IYMLIFG 94 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~--~s~~~l~~~i~~~~~-g~l~dr~Grr~~l~~~~~~~-~i~~~~~~---~~~~-~~~l~~~ 94 (466)
.|..-+|.|.|.+++|++ .+.+.+...+.++++ ++..||+||||..++.+.+. .......+ ...+ ..+++..
T Consensus 24 lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (390)
T TIGR02718 24 LPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGL 103 (390)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 355567889999999997 467788888888888 45799999999875555332 21122222 2222 3344555
Q ss_pred HHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh
Q 048207 95 RLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS 174 (466)
Q Consensus 95 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 174 (466)
-++.++..+...+...++..|..++++++...+....+..+|.++|+...+.+.+. .+||..|++.++..++..+..
T Consensus 104 ~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~---~gw~~~f~~~a~l~~~~~~~~ 180 (390)
T TIGR02718 104 LACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK---FGQRPAFLLVACVPLASLVCV 180 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHH
Confidence 66667777888888888999999888888888888888899999999887777664 459999999998877665555
Q ss_pred hcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhccc
Q 048207 175 LFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTG 254 (466)
Q Consensus 175 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (466)
++++|+++. +++ .++ +...+.++.+|++..+.......+. ...
T Consensus 181 ~~~~~~~~~---~~~-~~~-----------------------------~~~~~~~~~l~~~~~~~~~~~~~l~----~~~ 223 (390)
T TIGR02718 181 LWLKDRAVA---SPE-APL-----------------------------ARRASLFRFFRRPLAWSLLALALLS----AMT 223 (390)
T ss_pred HHcCCCCcC---ccc-cch-----------------------------hhHHHHHHHHcCcCHHHHHHHHHHH----HHH
Confidence 555443210 000 000 0011234444443322222222222 222
Q ss_pred chhHHhhHHHHHhhhCCCcchhhHHHHHHHH-HHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC
Q 048207 255 VNIISFYAPVLFRTIKLSENTSLLMSALVTG-GIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
......+.+.++++.|+++++.+ ......+ ...+++.++.|++.||+|+|+.+..+..+..+..+...... .. .
T Consensus 224 ~~~~~~~~~~~l~~~G~s~~~ig-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~-~~-~-- 298 (390)
T TIGR02718 224 AVSGFGLSKLYLVDAGWPLEWIG-RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQA-AF-W-- 298 (390)
T ss_pred HHHHHHHhhHHHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-Hc-c--
Confidence 33444566777788899998888 6655554 46677889999999999999988776655433322221111 00 0
Q ss_pred CCccchhhHHHHHHHHHHHHhhhccccccccccccccccc-cchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehh
Q 048207 334 GGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPL-EIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFF 412 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (466)
.............+.....+...... .....+..++ +.+++.+++.+...+++..++|.+.|.+.+..|+...+.
T Consensus 299 ---~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~ 374 (390)
T TIGR02718 299 ---LAPGIAVAWSCSAFGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFL 374 (390)
T ss_pred ---cCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 00111122222222222333333333 2332355554 889999999999999999999999999999888766555
Q ss_pred hHHHHHHHHHh
Q 048207 413 FGGWLTVMTTF 423 (466)
Q Consensus 413 ~~~~~~~~~~~ 423 (466)
.++.+.+.+.+
T Consensus 375 ~~~~~~l~a~~ 385 (390)
T TIGR02718 375 SGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=191.62 Aligned_cols=332 Identities=12% Similarity=0.062 Sum_probs=208.4
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh----hcch-HHHHHHHHHHHHHHhhhhhccc------hhHHHHH
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRA----LGGK-VSILIGGVAFLAGSALGGSAFN------IYMLIFG 94 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~------~~~l~~~ 94 (466)
..+++|+|..++|.+.++..+..++..|+.|+++|| +||| +.++.+.+..+++.++....++ .+++++.
T Consensus 36 ~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~ 115 (444)
T PRK09669 36 YTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVT 115 (444)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence 467789999999999999999999999999999998 7874 5566777777777766555543 4566667
Q ss_pred HHHhhhhhhhhhhhhhHHHHhcC-CCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC----CCcchHHHHHhhhHHHHH
Q 048207 95 RLLLGVGIDFGNQSVPLYLSEMA-PPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK----GGWGWKISLAMAAAPASI 169 (466)
Q Consensus 95 r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~wr~~f~~~~~~~~~ 169 (466)
.++.+.+.......-.++.+|+. ++++|.+..++...+..+|..+++.+...+.... ...+|+..+.+.++++++
T Consensus 116 ~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v 195 (444)
T PRK09669 116 YILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVV 195 (444)
T ss_pred HHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHH
Confidence 77777777777777788999998 4578998888888888888777776543332221 125799888888877666
Q ss_pred HHHHh-hcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHH
Q 048207 170 LTIGS-LFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPF 248 (466)
Q Consensus 170 ~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (466)
..+.. +..+|.++. .+ + ++.+.+...++.++++..+.......+..
T Consensus 196 ~~~~~~~~~~e~~~~--~~-~------------------------------~~~~~~~~~~~~~~n~~~~~l~~~~~~~~ 242 (444)
T PRK09669 196 LFFCCFFMTKERYTP--EV-D------------------------------NSSSVWKDLKLLLGNSQWRIMFIFNVVLL 242 (444)
T ss_pred HHHHHhCCeEEecCC--CC-c------------------------------CCCCHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 54443 334543210 00 0 00000122344444443333322222221
Q ss_pred HHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHh
Q 048207 249 FQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAA 328 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (466)
.. ........+++.+.. .+..+..........+..+++.++.+++.||+|+|+.+..+..+..+....+...
T Consensus 243 ~~----~~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~--- 314 (444)
T PRK09669 243 TA----VVTRGGATLYYVNYV-LLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI--- 314 (444)
T ss_pred HH----HHHHhhhhheeeeee-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---
Confidence 11 122222222232222 2222222244555567778888999999999999998887765554433322222
Q ss_pred hcCCCCCccchhhHHHHHHHHHHHHhhhcccccccccccccccc-------ccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 048207 329 QLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFP-------LEIRSAGQSITVAVGLLFTSLVAQTFLAM 401 (466)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (466)
+.++.+...+..++.+.+.+... +..+.+.+|..+ .+..|...|..+.+..++..+++.+.+.+
T Consensus 315 --------~~~~~~~~~~~~~i~g~~~~~~~-~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 315 --------PPSNVWLIFALNILFNFIQNLTT-PLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred --------CcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444444455555555443 444666677765 23456678899999999999999999999
Q ss_pred Hhhccc
Q 048207 402 LCHFKA 407 (466)
Q Consensus 402 ~~~~~~ 407 (466)
.+..|+
T Consensus 386 l~~~Gy 391 (444)
T PRK09669 386 LAWVDY 391 (444)
T ss_pred HHHcCC
Confidence 987764
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=179.51 Aligned_cols=332 Identities=15% Similarity=0.064 Sum_probs=228.8
Q ss_pred ccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhc-chHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhh
Q 048207 28 DYCKFDSQLLTSLTSSLYITGILASLIASSVTRALG-GKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGN 106 (466)
Q Consensus 28 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 106 (466)
++.|+|..|+|.+.++..+...++++++|.++||++ +|+++.+..++.++........++++.+++.-++..+......
T Consensus 30 ~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~ 109 (400)
T PF03825_consen 30 ESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTM 109 (400)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHH
Confidence 456789999999999999999999999999999986 6778888888888877788888999999999888888888888
Q ss_pred hhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHH-hhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChhhhh
Q 048207 107 QSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLL-NYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPNSII 185 (466)
Q Consensus 107 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~ 185 (466)
|...++..+... ++++-.+-.....++|.+++... +..+....+..+....+++.+...++.....+.+|+.|+.
T Consensus 110 pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~-- 185 (400)
T PF03825_consen 110 PLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPK-- 185 (400)
T ss_pred HHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccc--
Confidence 999998888875 34455566666667776666433 2222222221223345666666555555556667877621
Q ss_pred hcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHH
Q 048207 186 QRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVL 265 (466)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (466)
++. ++. .++....+..+++|++.... ..+..+...........|.+.|
T Consensus 186 -~~~--~~~-------------------------~~~~~~~~~~~llk~~~~~~----Fll~~~l~~~~~~~~~~f~~~y 233 (400)
T PF03825_consen 186 -RSA--KES-------------------------VKKLLGLDALKLLKNPRFLV----FLLAAFLIGISHAAYYTFFSIY 233 (400)
T ss_pred -ccc--CCC-------------------------cccccchHHHHHhcCccHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 00000112234444433222 2222223333456677788888
Q ss_pred HhhhC-CCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 048207 266 FRTIK-LSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLI 344 (466)
Q Consensus 266 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (466)
+++.| .+....+ ....+..++.++.-...+++.+|+|.|+++.++.+..++=..++.... ++.....
T Consensus 234 l~~~gg~~~~~~g-~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-----------~~~~~~~ 301 (400)
T PF03825_consen 234 LQELGGYSGSTIG-ILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-----------DPWPFIV 301 (400)
T ss_pred HHHcccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-----------CCcHHHH
Confidence 99888 5555555 667788889999999999999999999999999888888877776542 1111111
Q ss_pred ---HHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHH-HHHHHHHHHHHHHHHHhhcccc
Q 048207 345 ---LVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAV-GLLFTSLVAQTFLAMLCHFKAG 408 (466)
Q Consensus 345 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
.....+.+..++..+... ..++.+..|++.|++++++.+.. ..+|..++..+.|++.|+.+..
T Consensus 302 ~~~~l~q~lhG~tf~~~~~a~-~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 302 ALQLLGQLLHGLTFGLFHAAS-VRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred HHHHHHHhhhhHHHHHHHHHH-HHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 111234666666555554 56778999999999999998875 5789999999999999988743
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=190.26 Aligned_cols=383 Identities=13% Similarity=-0.003 Sum_probs=239.2
Q ss_pred cCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhc-----chHHHHHHHHHH-HHHHhhhhhccchhHHH-H
Q 048207 21 REDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALG-----GKVSILIGGVAF-LAGSALGGSAFNIYMLI-F 93 (466)
Q Consensus 21 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~-~i~~~~~~~~~~~~~l~-~ 93 (466)
...|.+++++|+|.++++...+...+...+-.+ +|+++||++ ||+.++++.++. .++....+..++..... +
T Consensus 47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~ 125 (468)
T TIGR00788 47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAA 125 (468)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 446778889999999999999999999999666 999999998 788888887776 34444444445544444 4
Q ss_pred HHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHH---HHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHH
Q 048207 94 GRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQ---VCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASIL 170 (466)
Q Consensus 94 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~---~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 170 (466)
.+++.+++.+...+...++..|..+ +++....+... ...++|.++++.+++.+.+. .+||..|++.+...++.
T Consensus 126 ~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~---~~~~~~f~~~a~l~ll~ 201 (468)
T TIGR00788 126 FIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK---TLTRILFLITAALLLLQ 201 (468)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHH
Confidence 8899999999999999999999998 55554433333 33458999999999988765 35999999988877777
Q ss_pred HHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHH
Q 048207 171 TIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQ 250 (466)
Q Consensus 171 ~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (466)
.+...+++|++.....+.+ ++... ........... ..++.....++.++++...+......+.+.
T Consensus 202 ~~~~~~~~E~~~~~~~~~~--~~~~~--------~~~~~~~~~~~----~~~~~~~~l~~~l~~~~i~~~l~fifl~~~- 266 (468)
T TIGR00788 202 LFVSNLSKERRAFVRPRIG--TYLEM--------NMALLTLGVLA----NVKVQILGLRGAIQLLEIAKPLIFIFLSYA- 266 (468)
T ss_pred HHHHHhccccccccccccc--ccchh--------hhhhhhhhHHH----HHHHHHHHHHHHHhcHHHHHHHHHHHHHHh-
Confidence 6666778886411000000 00000 00000000000 000000112222322222221221111011
Q ss_pred hcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhc
Q 048207 251 QVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQL 330 (466)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (466)
... ......+. ...+..|+++...+ ......+++.+++....+++.+|++.|+.+.++.++..++.......... .
T Consensus 267 ~~~-~~~~~~f~-~~~~~lG~s~~~~G-~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~-~ 342 (468)
T TIGR00788 267 NLP-GASGSVFC-ATTQCLPGGPSFSG-MSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKR-W 342 (468)
T ss_pred hcC-CCCceeEE-EEcccCCCCcchhh-hHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeec-c
Confidence 111 11111111 11246799999988 88888899999999999999999999998888777777665443211100 0
Q ss_pred CCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc----
Q 048207 331 GDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK---- 406 (466)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---- 406 (466)
+... .....+.......+...+.+..+.+. ..++.+..|++.+|+.+++.+.+.+++..+++.+.+.+.+..|
T Consensus 343 ~~~~--gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~ 419 (468)
T TIGR00788 343 NLAF--GISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCD 419 (468)
T ss_pred cccc--CCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 0000 00112233344455555666666676 5666899999999999999999999999999988888888877
Q ss_pred -cceehhhHHHHHHHHHh---hheeccc
Q 048207 407 -AGVFFFFGGWLTVMTTF---VHFFLPE 430 (466)
Q Consensus 407 -~~~~~~~~~~~~~~~~~---~~~~~~~ 430 (466)
+...+....++.+..++ ...++|+
T Consensus 420 ~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 420 NSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444444444433333 3335564
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=182.54 Aligned_cols=333 Identities=15% Similarity=0.184 Sum_probs=236.5
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhh----hhcchHHH-HHHHHHHHHHHhhhhhc-c-------chhHHH
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR----ALGGKVSI-LIGGVAFLAGSALGGSA-F-------NIYMLI 92 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~l-~~~~~~~~i~~~~~~~~-~-------~~~~l~ 92 (466)
..+.+|+++...|++..+..+..++..|+.|.++| |+||||.. ++|....+++.+++... | ...++.
T Consensus 28 ~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~ 107 (428)
T PF13347_consen 28 YTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLF 107 (428)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHH
Confidence 35677999999999999999999999999999999 89976654 56888888888877766 4 234567
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHhcCC-CcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCC----cchHHHHHhhhHHH
Q 048207 93 FGRLLLGVGIDFGNQSVPLYLSEMAP-PKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGG----WGWKISLAMAAAPA 167 (466)
Q Consensus 93 ~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~----~~wr~~f~~~~~~~ 167 (466)
+..++..++.........++..|..+ +++|.+..+....+..+|.++...+...+.+..+. .+|++..++.+++.
T Consensus 108 ~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~ 187 (428)
T PF13347_consen 108 VFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVG 187 (428)
T ss_pred HHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHH
Confidence 77777799999899999999999998 57899999999999999987666666655543331 27999998888877
Q ss_pred HHHHHHh-hcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHH
Q 048207 168 SILTIGS-LFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILI 246 (466)
Q Consensus 168 ~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (466)
++..+.. +..+|.++ + .++ ++++.+.++.+++.++++...... +
T Consensus 188 ~v~~~i~~~~~ke~~~------~-~~~------------------------~~~~~~~~~~~~~~~~nr~~~~l~----~ 232 (428)
T PF13347_consen 188 LVFFLITFFFVKERSV------E-VTE------------------------QEKKISLRDSLRSLFRNRPFRILL----L 232 (428)
T ss_pred HHHhhhhhheeeeccc------c-ccc------------------------cccccccccchhhhcccchHHHHH----H
Confidence 7765444 44666211 0 000 001111133344454443333332 3
Q ss_pred HHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHH
Q 048207 247 PFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIM 326 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 326 (466)
..+.............+++.+..-.++.... .......++.+++.++.++++||+|+|+.+..+..+.+++.+.+.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~-~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 233 AFFLQWLAFALMNTFLPYYFTYVLGNEGLIS-IFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHhcCchhhH-HHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence 3333333344444455556554333334444 666778888999999999999999999999999999988888776652
Q ss_pred HhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccc-------cchhhhhHHHHHHHHHHHHHHHHHHH
Q 048207 327 AAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPL-------EIRSAGQSITVAVGLLFTSLVAQTFL 399 (466)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~~~~~~~~~~~~ 399 (466)
.++.+...+...+.+.+.+..+. ..+.+.+|..+. +..|..+|+.+....++..+++.+.+
T Consensus 312 -----------~~~~~~~~i~~~l~gi~~~~~~~-~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 312 -----------PGSPWLVLILFILAGIGYGAFFV-IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred -----------hhhHHHHHHHHHHhHhhhccccc-ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 13456666666777777666554 446666788763 34588899999999999999999999
Q ss_pred HHHhhcc
Q 048207 400 AMLCHFK 406 (466)
Q Consensus 400 ~~~~~~~ 406 (466)
.+.+..|
T Consensus 380 ~~l~~~G 386 (428)
T PF13347_consen 380 LLLALVG 386 (428)
T ss_pred HHHHHhC
Confidence 9887765
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=182.85 Aligned_cols=355 Identities=10% Similarity=0.041 Sum_probs=207.2
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh-hcchHHHHHHHHHHHHHHhhhhhcc-chhHHHHHHHHhhhh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRA-LGGKVSILIGGVAFLAGSALGGSAF-NIYMLIFGRLLLGVG 101 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~ 101 (466)
..+++++|+|..+.+++.+.+........+++|+++|| +|||+++.++.++.+++.+++++++ +.+.+.++|+++|++
T Consensus 46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig 125 (500)
T PRK09584 46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVG 125 (500)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34567899999999999988877777777899999999 5999999999999999999998874 566777899999999
Q ss_pred hhhhhhhhhHHHHhcCCCcc--cCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh----h
Q 048207 102 IDFGNQSVPLYLSEMAPPKC--RGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS----L 175 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~----~ 175 (466)
.|...+...+++.|++|+++ |..++++++.+.++|..+||.+++++.+. .|||+.|++.++..++..+.. .
T Consensus 126 ~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~---~g~~~~F~i~~i~~~i~~i~~~~~~~ 202 (500)
T PRK09584 126 NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK---YGWSVAFALSVVGMLITVVNFAFCQR 202 (500)
T ss_pred hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999998654 45688999999999999999999998775 469999998876444433222 2
Q ss_pred cccCChhhhhhcCCcHHHHHHHH-----------HH-HhCccchHHHHHHH---H--HHhhccccCCcchHHhhhhhhhh
Q 048207 176 FLPETPNSIIQRTNDHQKAEKML-----------QR-VHGTADVQAELEDL---I--RASSDSKNINHPFKKIIQRKYRP 238 (466)
Q Consensus 176 ~~~es~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~ 238 (466)
.++|.++. .++++.+...... .. .....+........ . ........ . .++..++
T Consensus 203 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~ 273 (500)
T PRK09584 203 WVKQYGSK--PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAF---A----MKGAARR 273 (500)
T ss_pred HhccCCCC--CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh---h----cCHHHHH
Confidence 23332110 0000011100000 00 00000000000000 0 00000000 0 0011112
Q ss_pred HHHHHHHHHHHHhcccchhHHhhHHHHHhh-----h-----CCCcchhhHHHHHHHHHHHHHhhhhh----hhhhhhcCC
Q 048207 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRT-----I-----KLSENTSLLMSALVTGGIGTVSAILP----MILADKLGR 304 (466)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----g~l~d~~g~ 304 (466)
+.+..+.+.. ....++......+..+.. . |+. .... +...+..+..++..++. +++.+|++.
T Consensus 274 ~~~~~~~~~~--~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~-~~~s~n~i~iil~~p~~~~~~~~l~~r~~~ 349 (500)
T PRK09584 274 KMIVAFILML--EAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPE-QYQALNPFWIMIGSPILAAIYNKMGDRLPM 349 (500)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHH-HHHHHhHHHHHHHHHHHHHHHHHhCcCCCc
Confidence 2222211111 111122222233333221 1 111 1122 45556666666666665 444445545
Q ss_pred eeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHH
Q 048207 305 KVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITV 384 (466)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 384 (466)
.+.+.++.++.+++++.+....... +. ...-+.++.+....+.+.+... ..|....++.+..|++.||..+|+..
T Consensus 350 ~~~~~~G~~l~~l~f~~l~~~~~~~--~~--~~~vs~~~~~~~~~l~~~ge~~-~~p~g~s~~~~~aP~~~rg~~~g~~~ 424 (500)
T PRK09584 350 PHKFAIGMVLCSGAFLVLPLGAKFA--ND--AGIVSVNWLIASYGLQSIGELM-ISGLGLAMVAQLVPQRLMGFIMGSWF 424 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CC--CCccCHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5667777777777777765543211 00 0112233445555555555443 34444666789999999999999887
Q ss_pred HHHHHHHHHHHHHHH
Q 048207 385 AVGLLFTSLVAQTFL 399 (466)
Q Consensus 385 ~~~~~~~~~~~~~~~ 399 (466)
....+++.+++.+.+
T Consensus 425 l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 425 LTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHHHH
Confidence 766677766666664
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=174.89 Aligned_cols=383 Identities=12% Similarity=0.064 Sum_probs=239.6
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhh----hhcchHHHHHH-HHHHHHHHhhhhhccchh-----------
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR----ALGGKVSILIG-GVAFLAGSALGGSAFNIY----------- 89 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~l~~~-~~~~~i~~~~~~~~~~~~----------- 89 (466)
+.+++|+++.+.+++..+..+...+.+++.|+++| |+||||.++++ .....++.++.+++++.+
T Consensus 30 yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~ 109 (477)
T TIGR01301 30 YVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKT 109 (477)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccc
Confidence 45678999999999999999999999999999999 59999998774 666667777777776653
Q ss_pred ------HHHHHHHHhhhhhhhhhhhhhHHHHhcCCCccc--CchhhHHHHHHHHHHHHHHHHhhhhc--ccC--------
Q 048207 90 ------MLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCR--GAFNIGFQVCVATGILSANLLNYGTQ--KIK-------- 151 (466)
Q Consensus 90 ------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~~~--~~~-------- 151 (466)
.++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.++|+.++++.. +..
T Consensus 110 ~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 110 KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 223333344457788888899999999998865 57999999999999999999988652 111
Q ss_pred C--CcchHHHHHhhhHHHHHHHH-HhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcch
Q 048207 152 G--GWGWKISLAMAAAPASILTI-GSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPF 228 (466)
Q Consensus 152 ~--~~~wr~~f~~~~~~~~~~~~-~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (466)
+ ..+.|..|++.++..++..+ ..++.+|.|... .++ .++ + +.++ .++.+....+
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~-~~~--~---~~~~---------------~~~~~~~~~~ 246 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDD-FIN--S---EAAP---------------PSKHGEEAFF 246 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--ccc-chh--h---hccc---------------ccccchhhhH
Confidence 0 02578999998877666554 445578876310 000 000 0 0000 0000011223
Q ss_pred HHhhhhh-hhhHHHHHHHHHHHHhcccchhHHhhHHHHHhh--hCCCcc------hh---hHHHHHHHHHHHHHhhhhhh
Q 048207 229 KKIIQRK-YRPQLVMAILIPFFQQVTGVNIISFYAPVLFRT--IKLSEN------TS---LLMSALVTGGIGTVSAILPM 296 (466)
Q Consensus 229 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~---~~~~~~~~~~~~~~~~~~~g 296 (466)
+++++.. ..++.+...++..++.+.++..+..|...+..+ ++.++. +. +.+......+...+.+++..
T Consensus 247 ~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~ 326 (477)
T TIGR01301 247 GELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGME 326 (477)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443321 123333334444444444455555666555532 232221 11 22445566666667777888
Q ss_pred hhhhhcCC-eeeehhhhHHHHHHHHHHHHHHHhhcC--CC----CC--ccchhhHHHHHHHHHHHHhhhccccccccccc
Q 048207 297 ILADKLGR-KVLFLLGGIQMLVSQVMIGSIMAAQLG--DH----GG--FSIGYAYLILVLICVYKAGFGFSWGPLGWLVP 367 (466)
Q Consensus 297 ~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (466)
++.+|+|+ |+...++.++.++++....+......+ .. .. .+....+..+..+...+..++.. ..+++.++
T Consensus 327 ~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~-~siPfal~ 405 (477)
T TIGR01301 327 KLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT-YSIPFALA 405 (477)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH-HHHhHHHH
Confidence 89999985 566677777777777776655421110 00 00 00111345555556666665543 44567888
Q ss_pred ccccccc--chhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc--cceehhhHHHHHHH-HHhhheecccCC
Q 048207 368 SEIFPLE--IRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK--AGVFFFFGGWLTVM-TTFVHFFLPETK 432 (466)
Q Consensus 368 ~~~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (466)
++..|++ ..|..+|+.|.+..+...+.....|.+.+..+ ....+.++++..++ ++...+.+|+.+
T Consensus 406 s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 406 SIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8888854 45889999999999999888888888666665 33344455554444 444556666654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-20 Score=177.75 Aligned_cols=330 Identities=12% Similarity=0.043 Sum_probs=199.3
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh----hcchH-HHHHHHHHHHHHHhhhhhccc------hhHHHHHH
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRA----LGGKV-SILIGGVAFLAGSALGGSAFN------IYMLIFGR 95 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~~~------~~~l~~~r 95 (466)
.+.+|+++..+|.+..+.-+--++..|+.|.++|| +|||| .++++.+..+++.+++-..|+ ...+.+.-
T Consensus 37 t~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~ 116 (460)
T PRK11462 37 TDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITY 116 (460)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 46779999999999999999999999999999995 79865 455677788887776655543 34566677
Q ss_pred HHhhhhhhhhhhhhhHHHHhcCC-CcccCchhhHHHHHHHHHHHHHHHHhhhhcccCC----CcchHHHHHhhhHHHHHH
Q 048207 96 LLLGVGIDFGNQSVPLYLSEMAP-PKCRGAFNIGFQVCVATGILSANLLNYGTQKIKG----GWGWKISLAMAAAPASIL 170 (466)
Q Consensus 96 ~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~~wr~~f~~~~~~~~~~ 170 (466)
++..++.......-.++..|..+ ++||++..++...+..+|..+++.+...+....+ ..+|+....+.++++++.
T Consensus 117 ~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~ 196 (460)
T PRK11462 117 TLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMM 196 (460)
T ss_pred HHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 77788888888888999999997 7889999999999999988887766544333221 136888777777666555
Q ss_pred HHHhh-cccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHH
Q 048207 171 TIGSL-FLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFF 249 (466)
Q Consensus 171 ~~~~~-~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (466)
....+ ..+|.++. ++ + +.+.++.++..++++.++.......+...
T Consensus 197 ~~i~~~~~kE~~~~----~~--~----------------------------~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~ 242 (460)
T PRK11462 197 LAFCFFTTKERVEA----PP--T----------------------------TTSMREDLRDIWQNDQWRIVGLLTIFNIL 242 (460)
T ss_pred HHHHHhcceeccCC----Cc--c----------------------------CCCHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 44333 34543210 00 0 00001122333333332222222222222
Q ss_pred HhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhh
Q 048207 250 QQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQ 329 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (466)
.... ......|...| ...+..... .......++.+++.++++++.||+++|+.+..+.....+..+++.+.
T Consensus 243 ~~~~-~~~~~~y~~~y---~~g~~~~~~-~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~---- 313 (460)
T PRK11462 243 AVCV-RGGAMMYYVTW---ILGTPEVFV-AFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV---- 313 (460)
T ss_pred HHHH-HHhHhhhhhhh---hcCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh----
Confidence 1111 11222222222 222222233 45667778889999999999999999987664444333322222221
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHhhhcccccccccccccccc-------ccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048207 330 LGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFP-------LEIRSAGQSITVAVGLLFTSLVAQTFLAML 402 (466)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 402 (466)
+....+......++.+.+.+ ...++.+.+.+|..+ .+..|...+.......++..+++.+.+.++
T Consensus 314 -------~~~~~~~~~~~~~l~g~~~~-~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL 385 (460)
T PRK11462 314 -------PMQASITMFVFIFVIGVLHQ-LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML 385 (460)
T ss_pred -------chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222223333333332 223333445566655 233345556777889999999999999888
Q ss_pred hhccc
Q 048207 403 CHFKA 407 (466)
Q Consensus 403 ~~~~~ 407 (466)
+..|+
T Consensus 386 ~~~Gy 390 (460)
T PRK11462 386 AYGGY 390 (460)
T ss_pred HHcCC
Confidence 76553
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-20 Score=169.05 Aligned_cols=335 Identities=18% Similarity=0.167 Sum_probs=234.3
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh----hcchH-HHHHHHHHHHHHHhhhhhccc------hhHHHHHH
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRA----LGGKV-SILIGGVAFLAGSALGGSAFN------IYMLIFGR 95 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~~~------~~~l~~~r 95 (466)
.+.+|+++..+|.+..+.-+--++..|+.|.+.|| +||+| .++.+.+..++.+.++-.+++ ....++..
T Consensus 40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY 119 (467)
T COG2211 40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY 119 (467)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence 56779999999999999999999999999999995 88755 567788889998888887774 45677788
Q ss_pred HHhhhhhhhhhhhhhHHHHhcCC-CcccCchhhHHHHHHHHHHHHHHHHhhhhcccCC----CcchHHHHHhhhHHHHHH
Q 048207 96 LLLGVGIDFGNQSVPLYLSEMAP-PKCRGAFNIGFQVCVATGILSANLLNYGTQKIKG----GWGWKISLAMAAAPASIL 170 (466)
Q Consensus 96 ~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~~wr~~f~~~~~~~~~~ 170 (466)
.+.+++.......-.++..|+.+ ++||.+..++.+.+.++|.++...+...+....+ ..||+..-.+.++++.+.
T Consensus 120 ~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~ 199 (467)
T COG2211 120 MLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL 199 (467)
T ss_pred HHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence 89999999998889999999996 7889999999999999997776665544443322 247888888888777776
Q ss_pred HHHhhc-ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHH
Q 048207 171 TIGSLF-LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFF 249 (466)
Q Consensus 171 ~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (466)
.+..++ .+|.+. ++++ .++..+.++++.+....+++.+...++..+
T Consensus 200 ~l~~~~~v~ER~~---~~~~------------------------------~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l 246 (467)
T COG2211 200 LLFCFFNVKERVV---ETQP------------------------------TKTGVKLKLKDSFLLIFKNRPLLLLLLMNL 246 (467)
T ss_pred HHHHHHHhhcccC---cccc------------------------------CcccccccHHHHHHHHHccchHHHHHHHHH
Confidence 655544 566542 0000 000112233322221222222222333333
Q ss_pred HhcccchhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHh
Q 048207 250 QQVTGVNIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAA 328 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (466)
+.+...........+|.+ ..+.+..... ........+.+++.++..++.+|+|+|+.+.++.++..++.+++.+.
T Consensus 247 ~~~~~~~i~~s~~~yy~~y~lg~~~l~~~-~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~--- 322 (467)
T COG2211 247 LLFIAFNIRGSIMVYYVTYVLGDPELFAY-LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT--- 322 (467)
T ss_pred HHHHHHHHHhhhhheeEEEEcCChHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh---
Confidence 333344444444444443 2455555554 56666677777779999999999999999999988888888887776
Q ss_pred hcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccc-------cchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 048207 329 QLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPL-------EIRSAGQSITVAVGLLFTSLVAQTFLAM 401 (466)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (466)
+.++.+..++..++.+.+.+.. .++++.+.+|..+- +..|...|...++.-++.+++..+.++.
T Consensus 323 --------~~~~~~l~~~~~~i~~~g~~~~-~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 323 --------PAGSVVLIVVALIIAGVGTGIA-NPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred --------cCcchHHHHHHHHHHHHHhhcc-ccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666665543 45567777787542 3457778899999999999999999999
Q ss_pred Hhhccc
Q 048207 402 LCHFKA 407 (466)
Q Consensus 402 ~~~~~~ 407 (466)
++..|+
T Consensus 394 L~~~Gy 399 (467)
T COG2211 394 LGAIGY 399 (467)
T ss_pred HHHcCC
Confidence 987763
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-20 Score=177.93 Aligned_cols=331 Identities=12% Similarity=0.070 Sum_probs=195.8
Q ss_pred cccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhh----cchHHH-HHHHHHHHHHHhhh-hh----ccc--hhHHH
Q 048207 25 KVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRAL----GGKVSI-LIGGVAFLAGSALG-GS----AFN--IYMLI 92 (466)
Q Consensus 25 ~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~i~~~~~-~~----~~~--~~~l~ 92 (466)
.+++.+|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+..++. .. +++ .+.++
T Consensus 34 y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (448)
T PRK09848 34 YYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAY 113 (448)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHH
Confidence 35677899999999999999999999999999999996 777754 55555444444433 11 111 23345
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHhcCCC-cccCchhhHHHHHHH-----HHHHHHHHHhhhhcccCCCcchHHHHHhhhHH
Q 048207 93 FGRLLLGVGIDFGNQSVPLYLSEMAPP-KCRGAFNIGFQVCVA-----TGILSANLLNYGTQKIKGGWGWKISLAMAAAP 166 (466)
Q Consensus 93 ~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~-----~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~ 166 (466)
+..++.+++.+...+...++..|..++ ++|.+..++...+.+ +|..++|.++........ .+|.....+.+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~-~~~~~~~~~~~v~ 192 (448)
T PRK09848 114 LTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMV-SVYHFWTIVLAIA 192 (448)
T ss_pred HHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-hhHHHHHHHHHHH
Confidence 566778888888888777887877754 678877666654433 455556665543221100 1122222222333
Q ss_pred HHHHH-HHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHH
Q 048207 167 ASILT-IGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAIL 245 (466)
Q Consensus 167 ~~~~~-~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (466)
+++.. +.....||++.. +.+ +...+..++.+++++.. ....
T Consensus 193 ~~~~~~~~~~~~~e~~~~---~~~-------------------------------~~~~~~~~~~l~~n~~f----~~~~ 234 (448)
T PRK09848 193 GMVLYFICFKSTRENVVR---IVA-------------------------------QPSLKISLQTLKRNRPL----FMLC 234 (448)
T ss_pred HHHHHHHHHcCcEeccCC---Ccc-------------------------------CCCHHHHHHHHhCCchH----HHHH
Confidence 33322 223335554310 000 00001123344444332 2222
Q ss_pred HHHHHhcccchhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHH
Q 048207 246 IPFFQQVTGVNIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGS 324 (466)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 324 (466)
+..+.....+.......|.+.++ .+.+..... .......++.+++.++.+++.||+++|+.+.++..+..++.+.+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~ 313 (448)
T PRK09848 235 IGALCVLISTFAVSASSLFYVRYVLNDTGLFTV-LVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW 313 (448)
T ss_pred HHHHHHHHHHHHHhhhheeeEeeecCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 22222223334444455666554 454443333 4344445667889999999999999999999888777776655543
Q ss_pred HHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcccccccccccccccccc-------chhhhhHHHHHHHHHHHHHHHHH
Q 048207 325 IMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLE-------IRSAGQSITVAVGLLFTSLVAQT 397 (466)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~r~~~~g~~~~~~~~~~~~~~~~ 397 (466)
. +....+.......+.+.+.+...... ....+|..|.+ .+|..+|+.+....++..+++.+
T Consensus 314 ~-----------~~~~~~~~~~~~~l~g~G~~~~~~~~-~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i 381 (448)
T PRK09848 314 V-----------SVWSLPVALVALAIASIGQGVTMTVM-WALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSI 381 (448)
T ss_pred c-----------CchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 2 11223333444444555555444433 45556776643 45888999999999999999999
Q ss_pred HHHHHhhccc
Q 048207 398 FLAMLCHFKA 407 (466)
Q Consensus 398 ~~~~~~~~~~ 407 (466)
.+.+.+..|+
T Consensus 382 ~g~~l~~~G~ 391 (448)
T PRK09848 382 PAFILGLSGY 391 (448)
T ss_pred HHHHHHHcCC
Confidence 9998876653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-19 Score=166.89 Aligned_cols=365 Identities=17% Similarity=0.109 Sum_probs=241.8
Q ss_pred chhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHH-HHHHHHHHHHHhhhhhc-c-chhHHHHHHHHhhhhhhhhhhhhhH
Q 048207 35 QLLTSLTSSLYITGILASLIASSVTRALGGKVSI-LIGGVAFLAGSALGGSA-F-NIYMLIFGRLLLGVGIDFGNQSVPL 111 (466)
Q Consensus 35 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~i~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~~~~ 111 (466)
+..++..++..+..++..|+.|.++|+-|+||.+ .+...+..+++.+..+. + +++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888999999999999999999999877755 44555555666666663 3 3444444555555788888888999
Q ss_pred HHHhcCCCccc--------------------------CchhhHHHHHHHHHHHHHHHHhhhhcccCC-----CcchHHHH
Q 048207 112 YLSEMAPPKCR--------------------------GAFNIGFQVCVATGILSANLLNYGTQKIKG-----GWGWKISL 160 (466)
Q Consensus 112 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~~~wr~~f 160 (466)
++.|..+++++ ++..+.-.....+|.++...+...+....+ ..+-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999988 899998888888888887776555432221 13468888
Q ss_pred HhhhHHHHH-HHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhH
Q 048207 161 AMAAAPASI-LTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQ 239 (466)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (466)
.+.++.-++ .+...+++||.|+....++. ..-.... .+ ..++.+|+..+.+
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~-~~~~~~g-------------~~--------------~l~~t~k~~~~~~ 281 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSG-SSYLRFG-------------FK--------------RLWRTFKEIRKLR 281 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcc-hhHHHHH-------------HH--------------HHHHHHHHHHhCh
Confidence 887776554 45556668887642000000 0000010 01 1122223322333
Q ss_pred HHHHHHHHHHHhcccchhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCe--eeehhhhHHHH
Q 048207 240 LVMAILIPFFQQVTGVNIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRK--VLFLLGGIQML 316 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~ 316 (466)
-...+++..+...-+...+......|.+ ++|++..+.. .......+..++|+++.+++.||+|.| +.+.++.....
T Consensus 282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~-~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLI-VFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 4444555555555556667777777765 7899999888 888889999999999999999999998 66666555543
Q ss_pred HHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHH
Q 048207 317 VSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQ 396 (466)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~ 396 (466)
+..+...+-.... .......+...+...+.+...+.... ....+.+|+.|+++.+..+|+....+...+.++|.
T Consensus 361 ~i~~~g~~G~~~~-----~~g~~~~~~f~~~a~~~G~~~G~~qs-~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl 434 (477)
T PF11700_consen 361 IIPLYGLFGFWPS-----FFGLKSPWEFWVLAVLIGLFMGGIQS-ASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL 434 (477)
T ss_pred HHHHHHHHHhhhc-----ccCcccHHHHHHHHHHHHHHhhhHHH-HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 3222222100000 00123344455555555555554443 44666689999999999999999999999999999
Q ss_pred HHHHHHhhcc-cceehhhHHHHHHHHHhhheecccCCCC
Q 048207 397 TFLAMLCHFK-AGVFFFFGGWLTVMTTFVHFFLPETKNV 434 (466)
Q Consensus 397 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (466)
+++.+.+..+ ....+....+.+++++++...++.+|++
T Consensus 435 l~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 435 LFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence 9999999887 4555566666666666666666654443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=162.19 Aligned_cols=340 Identities=12% Similarity=0.082 Sum_probs=215.2
Q ss_pred cccccCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh-hcchHHHHHHHHHHHHHHhhhh---hccchhHHH
Q 048207 17 NRKMREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRA-LGGKVSILIGGVAFLAGSALGG---SAFNIYMLI 92 (466)
Q Consensus 17 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~ 92 (466)
+.+.+.+.+.+.|.+++.++..++.+.|+.-..+-++++|++.|| +|-|..-++-+....++.++.+ ..+.+|.+.
T Consensus 61 d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~ 140 (459)
T KOG4686|consen 61 DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTML 140 (459)
T ss_pred CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 445566677788889999999999999999999999999999996 7888877666666677777654 468999999
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCC----CcchH-----HHHH-h
Q 048207 93 FGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKG----GWGWK-----ISLA-M 162 (466)
Q Consensus 93 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~~wr-----~~f~-~ 162 (466)
++||+.|+|.....+.-.++..-|+..|+.+.++|+.....-+|..+-..+..++.+..+ .-+-. ..+- .
T Consensus 141 ~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~ 220 (459)
T KOG4686|consen 141 AGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVK 220 (459)
T ss_pred hhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 999999999988888899999999999999999999999888887765555444443211 00100 0000 0
Q ss_pred hhHHHHHHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHH
Q 048207 163 AAAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVM 242 (466)
Q Consensus 163 ~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (466)
.....++.....-+. .+++++.+.+-++ ...+..+ ..+ .+...++.+.
T Consensus 221 tc~~slical~lg~~-------------D~rAerilh~e~g---------------~~Ge~pk--Ltd--v~~f~ppfw~ 268 (459)
T KOG4686|consen 221 TCKQSLICALSLGLS-------------DDRAERILHLEEG---------------FLGEEPK--LTD--VNTFYPPFWV 268 (459)
T ss_pred HHHHHHHHHHHhhhh-------------hhHHHHHHhhhcC---------------cccCCcc--ccc--ccccCccHHH
Confidence 011111111111110 1112111110000 0000001 111 1122233333
Q ss_pred HHHHHHHHhcccchhHHhhHHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHH-H
Q 048207 243 AILIPFFQQVTGVNIISFYAPVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQ-V 320 (466)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~-~ 320 (466)
...++.. ......-+....|.++ +++|+++..++ .+.+.......+.+++.|.++||+|++..++.+..+..+.. .
T Consensus 269 ~~iicv~-yyva~fPFi~lg~~fF~~rfGlS~~~a~-~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~ 346 (459)
T KOG4686|consen 269 LVIICVL-YYVAWFPFITLGPMFFQKRFGLSAVSAG-NILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHS 346 (459)
T ss_pred HHHHHHH-HHHHHHHHhhhhHHHHHHhhCCChhhcc-chhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhh
Confidence 3333322 2222233344456555 56899998888 66666667788899999999999999987776554443332 2
Q ss_pred HHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 048207 321 MIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLA 400 (466)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 400 (466)
.+.+.. .+++. .+++.+..+.....+. |..++.+.|.++-|++.|+++.+.++|-++.|.+.|.
T Consensus 347 ~l~Ft~------------lsPy~---~m~~lGLsysllAcsl-WP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~ 410 (459)
T KOG4686|consen 347 GLFFTF------------LSPYT---SMTFLGLSYSLLACSL-WPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGF 410 (459)
T ss_pred hHHhhh------------ccHHH---HHHHHhhhHHHHHHHH-hhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhe
Confidence 222221 22332 3333333333222222 4444677899999999999999999999999999999
Q ss_pred HHhhcc
Q 048207 401 MLCHFK 406 (466)
Q Consensus 401 ~~~~~~ 406 (466)
+.|+-+
T Consensus 411 i~d~~g 416 (459)
T KOG4686|consen 411 IADGDG 416 (459)
T ss_pred eecCCC
Confidence 998776
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-20 Score=167.84 Aligned_cols=356 Identities=15% Similarity=0.119 Sum_probs=221.7
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHH--HHHH-hhhhhc----cchh-HHHHHHHHh
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAF--LAGS-ALGGSA----FNIY-MLIFGRLLL 98 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~--~i~~-~~~~~~----~~~~-~l~~~r~l~ 98 (466)
+++-|+|.++.|.+.++..+...+.+++.|.++||+|.||-++..+.+. ..+. +...+. .|.+ ..+++-+..
T Consensus 35 ~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l 114 (412)
T PF01306_consen 35 TQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYL 114 (412)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTT
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999766554433222 1122 222222 3332 334445556
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc-
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL- 177 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~- 177 (466)
|+......|+..+++.++. ++.+.-.|-.....++|.+++..++|.+.+. +-+..||+....+++..++..+.
T Consensus 115 ~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i----~p~~~fwi~s~~~~il~lll~~~~ 188 (412)
T PF01306_consen 115 GLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI----NPNIIFWIASAAAIILLLLLLLLK 188 (412)
T ss_dssp TTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----CccHHHHHHHHHHHHHHHHHHHcC
Confidence 6666677788888877765 3456667777888899999999998887763 34577887776666555444443
Q ss_pred cCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchh
Q 048207 178 PETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNI 257 (466)
Q Consensus 178 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (466)
|+.++.....+. +..++++.+.++..+.. +.+.++.+.+......+.+..
T Consensus 189 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~l~-k~~~fw~~~l~v~g~~~~Y~v 238 (412)
T PF01306_consen 189 PDVPPQAEVADA-----------------------------LGAKKDKVSLKDVLSLF-KMRNFWFFVLFVIGVAAIYDV 238 (412)
T ss_dssp --SSSSS-SSTT-----------------------------SSS------HHHHHHHT-TSHHHHHHHHHHHHHHHHHHH
T ss_pred CcCchhhhhhcc-----------------------------cccCCCCCcHHHHHHHh-cchhHHHHHHHHHHHHHHHHH
Confidence 333321111100 00011112233332211 122222233322222233444
Q ss_pred HHhhHHHHHhh----hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC
Q 048207 258 ISFYAPVLFRT----IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333 (466)
Q Consensus 258 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
+....+.|+.. .+.+....+ .+.+...+..++.-.+..++.+|+|.|+.++++..++.+=.+..++.
T Consensus 239 fdqqf~~y~~~~f~~~~~g~~~~G-~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-------- 309 (412)
T PF01306_consen 239 FDQQFPIYFASFFQSAGQGNQMYG-YLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-------- 309 (412)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHhcccccChhHHh-HHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--------
Confidence 44444555543 333334445 77888888999999999999999999999999999988888877765
Q ss_pred CCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHH-HHHHHHHHHHHHHHHHHHHhhcccc-eeh
Q 048207 334 GGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSIT-VAVGLLFTSLVAQTFLAMLCHFKAG-VFF 411 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 411 (466)
++++.....-.+.+..+.....+. .-|+++.+|++..++...+. +...+++..+.+++.|.+.|+.|.. +++
T Consensus 310 -----~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyl 383 (412)
T PF01306_consen 310 -----TNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYL 383 (412)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHH
Confidence 345566666666666666655555 56778999999999998885 5678899999999999999999955 555
Q ss_pred hhHHHHHHHHHhhheecccCCC
Q 048207 412 FFGGWLTVMTTFVHFFLPETKN 433 (466)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ 433 (466)
+.+.+.....++..+.+++.++
T Consensus 384 img~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 384 IMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHHheeeecCCCc
Confidence 6666555556666666655443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-18 Score=160.63 Aligned_cols=357 Identities=11% Similarity=0.040 Sum_probs=203.5
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhh-cchHHHHHHHHHHHHHHhhhhhcc-chhHHHHHHHHhhhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRAL-GGKVSILIGGVAFLAGSALGGSAF-NIYMLIFGRLLLGVGID 103 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g 103 (466)
+++++|+++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.+++++.+ +...+.++..+.++|.|
T Consensus 36 L~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G 115 (493)
T PRK15462 36 LTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYG 115 (493)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence 4567899999999999999999999999999999999 999999999999999988776543 22334444445556667
Q ss_pred hhhhhhhHHHHhcCCCc--ccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCCh
Q 048207 104 FGNQSVPLYLSEMAPPK--CRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETP 181 (466)
Q Consensus 104 ~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 181 (466)
...+...++++|.+|++ +|.+.+++.+.+.++|..++|.+.+.+.+. .|||+.|.+.++..++..+..++..+..
T Consensus 116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~---~Gw~~~F~iaaigm~l~li~~~~~~~~l 192 (493)
T PRK15462 116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE---YSWAMGFGLAAVGMIAGLVIFLCGNRHF 192 (493)
T ss_pred cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh---hChHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 77787889999999875 689999999999999999999999998764 4699999987764444333332221110
Q ss_pred hhh-hhcCCcHHHHHHHHHHHhC-------------ccchHHHH-HHHHHH----------hhccccCCcchHHhhhhhh
Q 048207 182 NSI-IQRTNDHQKAEKMLQRVHG-------------TADVQAEL-EDLIRA----------SSDSKNINHPFKKIIQRKY 236 (466)
Q Consensus 182 ~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~ 236 (466)
... ..++++.++ ++....... ......+. ....-. .-..+ + .++..
T Consensus 193 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~e 263 (493)
T PRK15462 193 THTRGVNKKVLRA-TNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRK-------A-ENQKQ 263 (493)
T ss_pred ccCCCCCCCCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------c-CCHHH
Confidence 000 000010100 000000000 00000000 000000 00000 0 00111
Q ss_pred hhHHHHH--HHHHHHHhcccchhHHhhHHHHHhh------hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCC--ee
Q 048207 237 RPQLVMA--ILIPFFQQVTGVNIISFYAPVLFRT------IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGR--KV 306 (466)
Q Consensus 237 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~ 306 (466)
+++.... +.+.....+..+.....-...+.++ .|++-. .. +..++..+..++.+++..++-.|..| |.
T Consensus 264 r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip-~~-~~qslNp~~ii~l~P~~a~lw~~l~~~~~~ 341 (493)
T PRK15462 264 RKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVP-TA-MFQSINAFAVMLCGVFLAWVVKESVAGNRT 341 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeC-HH-HHHhHhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 1222111 1111111111122222222222222 132222 23 55677777777777777776556532 21
Q ss_pred -----eehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhH
Q 048207 307 -----LFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQS 381 (466)
Q Consensus 307 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g 381 (466)
-..++.++++++.+.+.+..... +.+ ...+.++.+....+...+ .....|+....++++.|++.+|..+|
T Consensus 342 ~s~~~Kfa~g~~~~g~~f~~l~~~~~~~--~~~--~~~s~~wl~~~~~~~t~g-El~~sPvgls~~~~laP~~~~g~~mg 416 (493)
T PRK15462 342 VRIWGKFALGLGLMSAGFCILTLSARWS--AMY--GHSSLPLMVLGLAVMGFA-ELFIDPVAMSQITRIEIPGVTGVLTG 416 (493)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhc--CCC--CCcCHHHHHHHHHHHHHH-HHHHChHHHHHHHHhChHHHHHHHHH
Confidence 14566666777766665433221 111 112344444444444444 45567777888899999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHH
Q 048207 382 ITVAVG-LLFTSLVAQTFLAM 401 (466)
Q Consensus 382 ~~~~~~-~~~~~~~~~~~~~~ 401 (466)
+..... .+++.+++.+.+..
T Consensus 417 ~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 417 IYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 986533 56666666555544
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=161.41 Aligned_cols=277 Identities=12% Similarity=0.079 Sum_probs=188.5
Q ss_pred hhccchhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCC----------
Q 048207 83 GSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKG---------- 152 (466)
Q Consensus 83 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~---------- 152 (466)
+...+|+.++++-++.|.|.+...+....++++..+++++.+.+++.+..+++|..++|.+++.+.....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3457899999999999999999999999999999999999999999999999999999999887663210
Q ss_pred ---CcchHHHHHhhhHHHHHHHHHhhc--ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcc
Q 048207 153 ---GWGWKISLAMAAAPASILTIGSLF--LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHP 227 (466)
Q Consensus 153 ---~~~wr~~f~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (466)
...||++|++.+...++..+.+.+ +||.++ + +++ +. .+++ ...
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~-~~~-~~----------------------~~~~--~~~ 132 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------A-DVA-RV----------------------SSGD--TTQ 132 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------c-ccc-cc----------------------cccc--ccc
Confidence 136999999766554444444333 354321 0 000 00 0000 000
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHHHhh---hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCC
Q 048207 228 FKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRT---IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGR 304 (466)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 304 (466)
.++.++ ++..+...+..+++.........|.+.|+++ .+.++.+.+ ........+.++|+++.+++.||+++
T Consensus 133 ~~~~~~----~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~-~~~s~~~~~~~iGr~~~~~l~~r~g~ 207 (310)
T TIGR01272 133 KTSAFQ----FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAA-HFTAYTWGGAMVGRFIGSAVMPMISQ 207 (310)
T ss_pred hhhHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 111222 2333334555555555667788899999864 478888877 88899999999999999999999999
Q ss_pred eeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHH
Q 048207 305 KVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITV 384 (466)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 384 (466)
|+.+.++..+..+..++.... + . ........+.+.+.+..++.. .....+..|+ ..+++.++.
T Consensus 208 ~~~l~~~~~l~~~~~~l~~~~-----------~-~--~~~~~~~~l~g~~~s~i~P~~-~s~a~~~~~~-~~~~asai~- 270 (310)
T TIGR01272 208 GRYLAFNAFLAVLLSIGAALT-----------H-G--YVAMWFVLALGLFNSIMFPTI-FSLALNALGR-HTSQGSGIL- 270 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-----------C-C--HHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhh-hhhhhHHHH-
Confidence 998877766666555333321 1 1 112223344555555555554 4444566664 356667764
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccceehhh
Q 048207 385 AVGLLFTSLVAQTFLAMLCHFKAGVFFFF 413 (466)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
..+.+|+.+.|++.|.+.|..+....+..
T Consensus 271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 67889999999999999998875444443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-17 Score=145.12 Aligned_cols=357 Identities=13% Similarity=0.048 Sum_probs=236.8
Q ss_pred CcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchH-HHHHHHHHHHHHHhhhhhccc--h-hHHHHHHHHhhhhhhhhhhh
Q 048207 33 DSQLLTSLTSSLYITGILASLIASSVTRALGGKV-SILIGGVAFLAGSALGGSAFN--I-YMLIFGRLLLGVGIDFGNQS 108 (466)
Q Consensus 33 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~i~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~~~ 108 (466)
+.+..+...++..+..++-+|+.|.++|+.|+|| .+-+...+..++..+..++++ + +..++.-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 4567788899999999999999999999999655 555666667777777777765 4 44555778888999989999
Q ss_pred hhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhccc---------------CCCcchHHHHHhhhHHHHHHH-H
Q 048207 109 VPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKI---------------KGGWGWKISLAMAAAPASILT-I 172 (466)
Q Consensus 109 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~---------------~~~~~wr~~f~~~~~~~~~~~-~ 172 (466)
-.+++.+..++++-++..+.-.....+|..+.-+........ .+...=|..+.+.++.-++.. .
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999998888887777666666666555442111100 011346777777777655544 4
Q ss_pred HhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhc
Q 048207 173 GSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQV 252 (466)
Q Consensus 173 ~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (466)
+++..|+.++- +.. +.++. ....+++ +.++++..++ +.+..+.+..+...
T Consensus 216 m~~~v~~~~~~---~~~-~~~~l------------~~g~k~L----------~~t~k~i~~~----~~i~~FLiA~~~~~ 265 (438)
T COG2270 216 MILNVHDAEKI---SSP-PPTAL------------RNGFKEL----------KSTFKEIRGR----KNLVLFLIARFFYI 265 (438)
T ss_pred HHhcccccccc---ccc-chHHH------------HHHHHHH----------HHHHHHHhcc----cchHHHHHHHHHHH
Confidence 44556655430 000 10000 0011111 1223333322 23333333344444
Q ss_pred ccchhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcC
Q 048207 253 TGVNIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLG 331 (466)
Q Consensus 253 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (466)
-+.+........|-. ++|++..+.. .......+..++|+++.|++.||+|.|+++..+.++..+..+...+..
T Consensus 266 DGv~til~~~~~fg~~~~gls~~~ll-l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~----- 339 (438)
T COG2270 266 DGVNTILAMGGVFGAADLGLSSTELL-LIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE----- 339 (438)
T ss_pred hhHHHHHHHHHHHHHHHcCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-----
Confidence 455666666666665 7899988888 888888999999999999999999999998888777666555544331
Q ss_pred CCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc-cee
Q 048207 332 DHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKA-GVF 410 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 410 (466)
...-..+...+.+...+... .....+..+..|+++.++.+|+++..++..+.++|...+.+.+..+. ..-
T Consensus 340 --------~~~~f~i~gll~g~s~G~~q-A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g 410 (438)
T COG2270 340 --------GELDFWILGLLVGTSLGGAQ-ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG 410 (438)
T ss_pred --------ccHHHHHHHHHHHHhcchHH-HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence 12222333333333433333 33467778999999999999999999999999999999999988873 334
Q ss_pred hhhHHHHHHHHHhhheecccCCCC
Q 048207 411 FFFGGWLTVMTTFVHFFLPETKNV 434 (466)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~ 434 (466)
+....+...++.+.+...|..+++
T Consensus 411 ~~~i~vll~iGl~~L~~v~~~~~~ 434 (438)
T COG2270 411 VLSIIVLLLIGLLLLLRVKVPGRR 434 (438)
T ss_pred HHHHHHHHHhhHhhEEeecCCCCc
Confidence 445555566666666777665433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-18 Score=149.66 Aligned_cols=364 Identities=13% Similarity=0.076 Sum_probs=236.2
Q ss_pred ccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc------cchh--HHHHHHHHhh
Q 048207 28 DYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA------FNIY--MLIFGRLLLG 99 (466)
Q Consensus 28 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~------~~~~--~l~~~r~l~G 99 (466)
..++ +.+..-|+.-+|++.+....+++-|+.|++|-|..++++.++..++..+-..+ +.++ ....+..+.+
T Consensus 73 ~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa 151 (480)
T KOG2563|consen 73 SFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAA 151 (480)
T ss_pred HHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHH
Confidence 3445 67778899999999999999999999999999999999999999999987766 3345 6667888888
Q ss_pred hhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC---CCcchHH--HHHhhhHHHHHHHH-H
Q 048207 100 VGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK---GGWGWKI--SLAMAAAPASILTI-G 173 (466)
Q Consensus 100 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~wr~--~f~~~~~~~~~~~~-~ 173 (466)
.++-........+..-|++++||..+..+-..+..+|.+++.++...+.... +...|.. .|+.....+.+.+. .
T Consensus 152 ~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~ 231 (480)
T KOG2563|consen 152 AAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALV 231 (480)
T ss_pred HhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777788899999999999999999999999999999888777654 2345665 35544433333322 2
Q ss_pred hhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcc
Q 048207 174 SLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVT 253 (466)
Q Consensus 174 ~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (466)
.+..++.|+.- ++.+.... .+.+-..+.++.+++ +.+....+.+.....
T Consensus 232 ~~~~~~~P~tP------ps~s~~~~---------------------~~~~f~~si~~~~~n----~~F~il~~~ygi~~g 280 (480)
T KOG2563|consen 232 LFVFTKKPPTP------PSASQAAL---------------------QDASFPKSIKSCFKN----RQFIILAICYGIGLG 280 (480)
T ss_pred HHhcCCCCCCC------CchhHhhh---------------------hcCcHHHHHHHHHcC----ccHHHHHHHHhhhHH
Confidence 23333333210 11110000 000112234444443 333334444444444
Q ss_pred cchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCee-eehhhhHHHHHHHHHHHHHHHhhcCC
Q 048207 254 GVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKV-LFLLGGIQMLVSQVMIGSIMAAQLGD 332 (466)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (466)
.++.....+...+...|++...++ +......+++++++.+.|.+.||.++-+ ...+......++...+.....
T Consensus 281 ~F~~l~~~l~~~l~~sgY~~~~aG-~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~----- 354 (480)
T KOG2563|consen 281 LFNSLSTLLNLALCPSGYEGVFAG-YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTL----- 354 (480)
T ss_pred HHHHHHHHhhhccccccCCccccc-hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-----
Confidence 445544444434444566666666 8888999999999999999999987644 344443443333222221110
Q ss_pred CCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc----cc
Q 048207 333 HGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK----AG 408 (466)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 408 (466)
.....++.. ..+.....+..+..|+..-+..|..-|..-++..|+.+.++++.+.+...+.+...+..+ +.
T Consensus 355 ----~~~~~viv~-~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~ 429 (480)
T KOG2563|consen 355 ----FLGDSVIVF-TTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTF 429 (480)
T ss_pred ----cCCceEehh-hhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCc
Confidence 111122222 223333344556667777777787666777899999999999999999999999988877 44
Q ss_pred eehhhHHHHHHHHHhhheecccCCCC
Q 048207 409 VFFFFGGWLTVMTTFVHFFLPETKNV 434 (466)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (466)
...++.....++.+.+..+.++..+|
T Consensus 430 ~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 430 PANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred cchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 45555555555555555555544433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-17 Score=156.54 Aligned_cols=176 Identities=15% Similarity=0.076 Sum_probs=135.0
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhh---hhhccchhHHHHHHHHhhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSAL---GGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~---~~~~~~~~~l~~~r~l~G~~~ 102 (466)
+++++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...++++|++.|++.
T Consensus 277 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 356 (490)
T PRK10642 277 LSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVIL 356 (490)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45667888888888888899999999999999999999999988877654433322 223456778888999999888
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPN 182 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~ 182 (466)
+........++.|.+|++.|++.+++......++..++|.+.+.+.+.. .+|+.+++...+++++..+..+++||+|+
T Consensus 357 ~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~~~~~~~~pes~~ 434 (490)
T PRK10642 357 NCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIGLITGVTMKETAN 434 (490)
T ss_pred HHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHhccccC
Confidence 8777778888999999999999999744444455567777776665432 24787777777777777777777899999
Q ss_pred hhhhc----CCcHHHHHHHHHHHhC
Q 048207 183 SIIQR----TNDHQKAEKMLQRVHG 203 (466)
Q Consensus 183 ~~~~~----~~~~~~~~~~~~~~~~ 203 (466)
|+.++ +++.+|+++.+++++.
T Consensus 435 ~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 435 RPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred CCCCCccccccchhhHHHHhhcccc
Confidence 98764 2338899999988873
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.4e-19 Score=167.81 Aligned_cols=376 Identities=15% Similarity=0.109 Sum_probs=3.0
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc----------------
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF---------------- 86 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---------------- 86 (466)
.+.|++.|++++++.|++.+.+-++..+..++..++++|..|-|.+-.|.++++++++++++-+
T Consensus 26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~ 105 (539)
T PF03137_consen 26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG 105 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence 6789999999999999999999999999999999999999888899999999999999876520
Q ss_pred ----------------------------------chhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHH
Q 048207 87 ----------------------------------NIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVC 132 (466)
Q Consensus 87 ----------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 132 (466)
-++.++++.++.|+|....++...+|+-|..++++-+..+|+..+.
T Consensus 106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~ 185 (539)
T PF03137_consen 106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM 185 (539)
T ss_dssp ----------------------------------------------SSS-------------------------------
T ss_pred ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence 0367888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccCC---------------Cc----chHHHHHhhhHHHHHHHHHhhcccCChhhhhhcCCcHHH
Q 048207 133 VATGILSANLLNYGTQKIKG---------------GW----GWKISLAMAAAPASILTIGSLFLPETPNSIIQRTNDHQK 193 (466)
Q Consensus 133 ~~~G~~~~~~~~~~~~~~~~---------------~~----~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~ 193 (466)
..+|.++|.++++.+.+... +. .|..-|++.++..++..+..+++|+..+. +.+..++
T Consensus 186 ~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~---~~~~~~~ 262 (539)
T PF03137_consen 186 SILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPG---TSERQEE 262 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC---cccccch
Confidence 99999999999987654311 01 25555666666666655555666654221 1000000
Q ss_pred HHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHHHh-hhCCC
Q 048207 194 AEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFR-TIKLS 272 (466)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 272 (466)
.+...++. ++..+++.++.+ ..+...+.-+.+...+++..+++.++...+...........+..|.|.|+| +++.+
T Consensus 263 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~s 339 (539)
T PF03137_consen 263 KESSERKE--EDSDKDSFKDPK-SKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLS 339 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhcch--hhhhhhcccccc-cccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 00000000 000000000000 000000111223333445566677777777777777778889999999996 58888
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhhhcC--CeeeehhhhHHHHHHHHHHHHHHHh------------hcC------C
Q 048207 273 ENTSLLMSALVTGGIGTVSAILPMILADKLG--RKVLFLLGGIQMLVSQVMIGSIMAA------------QLG------D 332 (466)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~------~ 332 (466)
+..+..+...+...+..+|.+++|++.+|++ .|+.+....+...++.+.+...... .++ .
T Consensus 340 as~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~ 419 (539)
T PF03137_consen 340 ASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSP 419 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCC
Confidence 8877733334444467789999999999975 3455544444444444331111100 000 0
Q ss_pred --------------------CCCccch---hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHH
Q 048207 333 --------------------HGGFSIG---YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLL 389 (466)
Q Consensus 333 --------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 389 (466)
.+..+.+ .....++..++..+..+....|..... -..+|+++|+.+.|+...+.++
T Consensus 420 ~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~-LR~V~~~~rs~AlGv~~~~~rl 498 (539)
T PF03137_consen 420 SCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLIT-LRCVPPEQRSFALGVQWLIIRL 498 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheee-eccCChhhcchhhhHHHHHHHh
Confidence 0000111 122233333333344444555553444 4889999999999999877665
Q ss_pred -HHHHHHHHHHHHHhhc
Q 048207 390 -FTSLVAQTFLAMLCHF 405 (466)
Q Consensus 390 -~~~~~~~~~~~~~~~~ 405 (466)
|..-+|.++|.++|+.
T Consensus 499 lg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 499 LGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -----------------
T ss_pred hcCcchHHHHhHHHhhh
Confidence 5567888889998875
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-15 Score=137.23 Aligned_cols=365 Identities=16% Similarity=0.092 Sum_probs=215.6
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh-hcchHHHHHHHHHHHHHHhhhhhcc--chhHHHHHHHHhhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRA-LGGKVSILIGGVAFLAGSALGGSAF--NIYMLIFGRLLLGVGI 102 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~ 102 (466)
..+.+|+|+++..-+.+.|..-.-+..+++|+++|| +|+|+.+.+|.+++.+|.++.+.+. +...+.++-.+.++|.
T Consensus 52 ~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~ 131 (498)
T COG3104 52 LGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGT 131 (498)
T ss_pred ccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcc
Confidence 345578999999999999999999999999999999 5999999999999999999999984 7889999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcc--cCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCC
Q 048207 103 DFGNQSVPLYLSEMAPPKC--RGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 180 (466)
|..-+...+++.|.+|+++ |-..++++..+.++|.+++|.+.+++.+. .||+..|...++-..+.++..+..+..
T Consensus 132 Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~---~g~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 132 GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN---YGWHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred ccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHccch
Confidence 9999999999999998654 66789999999999999999999998875 459999999887766665555443321
Q ss_pred hhhhh----hcCCcHHHHHHHHHHH-----hCc--c-chHHHHHHHHH------Hh---hccccCCcchHHhhhhhhhhH
Q 048207 181 PNSII----QRTNDHQKAEKMLQRV-----HGT--A-DVQAELEDLIR------AS---SDSKNINHPFKKIIQRKYRPQ 239 (466)
Q Consensus 181 ~~~~~----~~~~~~~~~~~~~~~~-----~~~--~-~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~ 239 (466)
-.... .+.++..+.......+ ... . ...+....... .. .+....+....+.-|....-+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~ 288 (498)
T COG3104 209 VKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIP 288 (498)
T ss_pred hcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 10000 0000011111100000 000 0 00000000000 00 000000000001000000111
Q ss_pred HHHHHHHHHHHhcccchhHHhhHHHHHhh--hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCe--ee-----ehh
Q 048207 240 LVMAILIPFFQQVTGVNIISFYAPVLFRT--IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRK--VL-----FLL 310 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~-----~~~ 310 (466)
.++...+.+..+--.......|.....++ +|++-. .. +..++..+.-++.+++..++..|.+++ +. +-+
T Consensus 289 Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp-~~-~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFal 366 (498)
T COG3104 289 LFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVP-PA-WFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFAL 366 (498)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhcccccceecC-HH-HHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHH
Confidence 22222222222222233344444433332 222222 22 566777777777787777777774333 21 234
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHH
Q 048207 311 GGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLF 390 (466)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 390 (466)
+..++..+.+++....... .++ .+..+.++.+....+..++ ....+|+...++....|++..+..+++.......+
T Consensus 367 Gl~l~g~~fl~l~~~~~~~-~~~--~~~~s~~~lil~y~l~s~g-EL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~ 442 (498)
T COG3104 367 GLILAGLGFLILLLAGIWF-GGP--SGLVSVWWLVLSYVLQSFG-ELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAG 442 (498)
T ss_pred HHHHHHHHHHHHHHHHHhh-cCC--CCCcCHHHHHHHHHHHHHH-HHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4444444444444432111 111 1223334444333443333 45566777777789999999888888877777776
Q ss_pred HHHHHHHHH
Q 048207 391 TSLVAQTFL 399 (466)
Q Consensus 391 ~~~~~~~~~ 399 (466)
..++..+.+
T Consensus 443 ~~l~g~va~ 451 (498)
T COG3104 443 QTLGGQVAG 451 (498)
T ss_pred HHhhceecc
Confidence 666666655
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=129.69 Aligned_cols=334 Identities=14% Similarity=0.052 Sum_probs=216.6
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhc-----chHHHHH-HHHHHHHHHhhhhhc-----c-------c
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALG-----GKVSILI-GGVAFLAGSALGGSA-----F-------N 87 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~l~~-~~~~~~i~~~~~~~~-----~-------~ 87 (466)
|..|++++....+.+.+...+... ..+.+|+.+|+.+ ||..+++ |..+...+..+..++ . +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 456889999999999988887766 5899999999998 7776654 555555555554432 2 2
Q ss_pred h----hHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhh
Q 048207 88 I----YMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMA 163 (466)
Q Consensus 88 ~----~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~ 163 (466)
. ....+...+.|+|.+...+...++++|..|+++|+++.++......+|.+++..+.+.+.+......-...+...
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 2 244557788999999999999999999999999999999999999999999998877665533211122223333
Q ss_pred hHHHHHHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHH
Q 048207 164 AAPASILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMA 243 (466)
Q Consensus 164 ~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (466)
++..+...++..+=.|.++....+. ..+++...+..+++...++..++++..
T Consensus 165 a~i~~~l~~ia~wg~E~r~~~~~~~----------------------------~~~~~~~f~~a~~~~~~~~~a~~f~~f 216 (403)
T PF03209_consen 165 ALIALLLNLIALWGQEPRRSRRAAA----------------------------AERPRPPFREAWRQVWASPQARRFFVF 216 (403)
T ss_pred HHHHHHHHHHHHHhcccCCcccccC----------------------------CCCCCccHHHHHHHHHhCCChhHHHHH
Confidence 3333333333333233221000000 000111112334445545555555544
Q ss_pred HHHHHHHhcccchhHHhhH-HHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhh-hcCCeeeehhhhHHHHHHHHH
Q 048207 244 ILIPFFQQVTGVNIISFYA-PVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD-KLGRKVLFLLGGIQMLVSQVM 321 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~ 321 (466)
..+..+.. +.-...+ |+=-+.+|++..++. -++...+.+.+++....+++.. |.++++...+++....+++.+
T Consensus 217 l~l~t~a~----~~QD~iLEPygg~Vfgmsv~eTT-~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l 291 (403)
T PF03209_consen 217 LFLGTLAF----FMQDVILEPYGGEVFGMSVGETT-RLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL 291 (403)
T ss_pred HHHHHHHH----HhhHHHcCCchhHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 44333321 1111111 222245789999888 8889999999999999888776 577777777788877777776
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 048207 322 IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAM 401 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (466)
+.... ...+.+.+.....+++.+.+.......... -+..+++..|+.+|.-...+.+...++....|.+
T Consensus 292 ii~a~----------~~~~~~~~~~~~~l~G~g~G~f~vgals~m-M~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 292 IILAG----------PLGSPWLFRPGVFLLGLGNGLFTVGALSLM-MDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHHHH----------hcccchHHHHHHHHHHHhhhHHHHHHHHHH-HhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 223455666666666666555444332333 4888888899999999998888888888888887
Q ss_pred Hhh
Q 048207 402 LCH 404 (466)
Q Consensus 402 ~~~ 404 (466)
.|.
T Consensus 361 ~D~ 363 (403)
T PF03209_consen 361 RDL 363 (403)
T ss_pred HHH
Confidence 774
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-16 Score=149.22 Aligned_cols=366 Identities=15% Similarity=0.099 Sum_probs=250.7
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc----------------
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF---------------- 86 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---------------- 86 (466)
...|++.|+++.++.|++.+.+=++..+...+..+.+-|.-|-+.+-+|+++++++++++++-+
T Consensus 120 IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~ 199 (735)
T KOG3626|consen 120 ITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQS 199 (735)
T ss_pred hhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcc
Confidence 5788999999999999999999999999999999999999999999999999999999987731
Q ss_pred ---c--------------------------------h-hHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHH
Q 048207 87 ---N--------------------------------I-YMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQ 130 (466)
Q Consensus 87 ---~--------------------------------~-~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 130 (466)
+ + ..++++.++.|+|....++...+|+-|...+++-...+++..
T Consensus 200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~ 279 (735)
T KOG3626|consen 200 VENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY 279 (735)
T ss_pred ccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHH
Confidence 0 2 267779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCc----------------chHHHHHhhhHHHHHHHHHhhcccCChhhhhhcCCcHHHH
Q 048207 131 VCVATGILSANLLNYGTQKIKGGW----------------GWKISLAMAAAPASILTIGSLFLPETPNSIIQRTNDHQKA 194 (466)
Q Consensus 131 ~~~~~G~~~~~~~~~~~~~~~~~~----------------~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~ 194 (466)
+...+|.++|.++++++.....++ .|..-|++.+.+.++..+.++++|...+. .++ ..++
T Consensus 280 ~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~---~~~-~~~~ 355 (735)
T KOG3626|consen 280 SMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK---SQK-RKRA 355 (735)
T ss_pred HHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc---ccc-cchh
Confidence 999999999999998876532211 26667777787777777777777765421 111 0000
Q ss_pred HHHHHHHhCccchHHHHHHHHHHhhccccCCc---chHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHHHh-hhC
Q 048207 195 EKMLQRVHGTADVQAELEDLIRASSDSKNINH---PFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFR-TIK 270 (466)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 270 (466)
++ .+..++.+. ..++...... .+...+++...+++++...+........+..+..|+|.|++ +++
T Consensus 356 ~~----~~~~k~~~~-------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg 424 (735)
T KOG3626|consen 356 RD----LHVLKTESG-------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFG 424 (735)
T ss_pred hh----hcccccccc-------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcC
Confidence 00 000000000 0001111111 23333455566677888888888888888999999999996 689
Q ss_pred CCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCC--eeeehhhhHHHHHHHHHHHHHHHhh-------------------
Q 048207 271 LSENTSLLMSALVTGGIGTVSAILPMILADKLGR--KVLFLLGGIQMLVSQVMIGSIMAAQ------------------- 329 (466)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 329 (466)
.+...+..+...+..-+..+|.+++|++++|++. |....+..+...++++.........
T Consensus 425 ~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~ 504 (735)
T KOG3626|consen 425 ISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAF 504 (735)
T ss_pred CCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCcc
Confidence 9888887333344455567888999999998754 4444444444444444422221110
Q ss_pred -c-C------C----------------------------------CC----------Ccc------------------ch
Q 048207 330 -L-G------D----------------------------------HG----------GFS------------------IG 339 (466)
Q Consensus 330 -~-~------~----------------------------------~~----------~~~------------------~~ 339 (466)
. . + .+ -.+ ..
T Consensus 505 ~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~ 584 (735)
T KOG3626|consen 505 TSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCR 584 (735)
T ss_pred ccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcch
Confidence 0 0 0 00 000 11
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHH-HHHHHHHHHHHHHhh
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLL-FTSLVAQTFLAMLCH 404 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~ 404 (466)
....+++.+++..+..+.+..|. +.++-..+|++.|..++|+..++.++ |..-+|.++|+++|.
T Consensus 585 ~~~~Fl~~~~~~sf~~~~~~~p~-~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 585 QFLIFLALFAIGSFIGALGAVPG-MLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred hhHHHHHHHHHHHHHHHhccCcc-eEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 12333444444444444555555 44446899999999999999887665 455678888999985
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-16 Score=143.34 Aligned_cols=371 Identities=15% Similarity=0.128 Sum_probs=221.1
Q ss_pred ccccc-cccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcc-hHHHHHHHHHHHHHHhhh-hhc---c-chhHHHHHHH
Q 048207 24 TKVSD-YCKFDSQLLTSLTSSLYITGILASLIASSVTRALGG-KVSILIGGVAFLAGSALG-GSA---F-NIYMLIFGRL 96 (466)
Q Consensus 24 ~~i~~-~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~~-~~~---~-~~~~l~~~r~ 96 (466)
|.+++ |.+.+.+..|++.++..++.+++++.+|+...|.+. |+.++.|.++..+++++. ++. + ..+.++++|+
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~ 138 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARI 138 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 44444 678889999999999999999999999999999997 888999999999999988 333 3 5789999999
Q ss_pred HhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCC-------cc---hHHHHHhhhHH
Q 048207 97 LLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGG-------WG---WKISLAMAAAP 166 (466)
Q Consensus 97 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-------~~---wr~~f~~~~~~ 166 (466)
+.|+|.| ......+|+++....++|.|+++....+..+|.++||.++..+...... .. +-.+-|+.++.
T Consensus 139 l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~ 217 (488)
T KOG2325|consen 139 LTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAIL 217 (488)
T ss_pred HcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHH
Confidence 9999987 5577899999999999999999999999999999999888776654321 11 23466777777
Q ss_pred HHHHHHH-hhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHH
Q 048207 167 ASILTIG-SLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAIL 245 (466)
Q Consensus 167 ~~~~~~~-~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (466)
.++..+. .++++|.++...+++.+.+ ++ .+.+.++.+. .+.-+...+.+.
T Consensus 218 ~i~~~v~i~~~f~E~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~-------~~~d~~~~~vc~ 268 (488)
T KOG2325|consen 218 WIIYIVIILFFFKEVYRGIIDKKKRSV-------------------EE---EKSDIEKVKK-------PKLDWVAVLVCI 268 (488)
T ss_pred HHHHHHHHHhheeecccCccccccccc-------------------hh---hccchhhhcc-------CChhHHHHHHHH
Confidence 7765444 4556776642211111000 00 0000000000 111112222222
Q ss_pred HHHHHhcccchh-HHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhh---hhhh-hhcCCeeeehhhhHHHHHHHH
Q 048207 246 IPFFQQVTGVNI-ISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILP---MILA-DKLGRKVLFLLGGIQMLVSQV 320 (466)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~l~-d~~g~~~~~~~~~~~~~~~~~ 320 (466)
+..+.....+.. -....+.....+++..+++.........+.+++...+. .+.. .++.+|+.+..+++....+..
T Consensus 269 ~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~ 348 (488)
T KOG2325|consen 269 FLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYY 348 (488)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhh
Confidence 222222222233 33344555566777766665344444444444443332 2222 233445555555343333333
Q ss_pred HHHHHHHhhc-C----C---CCCccch----------hhHHHH-HHHHHHHHhhhccccccccccccccccccchhhhhH
Q 048207 321 MIGSIMAAQL-G----D---HGGFSIG----------YAYLIL-VLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQS 381 (466)
Q Consensus 321 ~~~~~~~~~~-~----~---~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g 381 (466)
+......... + + ....... ..+..+ ....+++..+-....+....+ +|...++.+++..|
T Consensus 349 i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tly-SkiLgp~~q~~~qg 427 (488)
T KOG2325|consen 349 IFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLY-SKILGPRDQGTMQG 427 (488)
T ss_pred eeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHH-HHHhCCccccceeE
Confidence 3222111110 0 0 0000011 111111 112222333322233343444 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHHHHhhh
Q 048207 382 ITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMTTFVH 425 (466)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (466)
+....+..+..++|.+........|....+.......++....+
T Consensus 428 ~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 428 VFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW 471 (488)
T ss_pred EEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888887766666555554444433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=119.42 Aligned_cols=137 Identities=25% Similarity=0.320 Sum_probs=120.7
Q ss_pred HHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCC
Q 048207 40 LTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPP 119 (466)
Q Consensus 40 ~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 119 (466)
+.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhh-cccC
Q 048207 120 KCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSL-FLPE 179 (466)
Q Consensus 120 ~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e 179 (466)
++|++..++.+....+|..+++.+++.+.+. .+|++.+++.++..++..+... +.||
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQF---LGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc---cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999888764 4599999988877666554443 3454
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=128.91 Aligned_cols=318 Identities=15% Similarity=0.145 Sum_probs=202.0
Q ss_pred hhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh--hhhhhhhhhHHHHhcCCCcc
Q 048207 44 LYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG--IDFGNQSVPLYLSEMAPPKC 121 (466)
Q Consensus 44 ~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~--~g~~~~~~~~~i~~~~~~~~ 121 (466)
..+...+.++..|.++||+|||..+.+......+..++..+.. |++++ +.|+. .+.......++++|....++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhH
Confidence 3677788999999999999999999999999888888887766 33333 44432 33456678889999999999
Q ss_pred cCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHH-HhhcccCChhhhhhcCCcHHHHHHHHHH
Q 048207 122 RGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTI-GSLFLPETPNSIIQRTNDHQKAEKMLQR 200 (466)
Q Consensus 122 r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~es~~~~~~~~~~~~~~~~~~~~ 200 (466)
|....++.......+..++|.+++...+.. +.-.+|.+..+..++..+ ...++||+-.. +++ .+ ...++
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~---~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~-~~---~~~~~ 215 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFL---GIALVFLIAAASGILSLLYMLLFLPESLQE---KER-SD---ATLRE 215 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHhhccccccCc---ccc-cc---ccccc
Confidence 999999999999999999999999888753 366788888877777654 45668887531 111 00 00000
Q ss_pred HhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHHH-hhhCCCcchhhHH
Q 048207 201 VHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLF-RTIKLSENTSLLM 279 (466)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (466)
..... .........++...+....+..+............-.....-..+.++ ..++++..+.+ .
T Consensus 216 ~~~~~-------------~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s-~ 281 (463)
T KOG2816|consen 216 LTPGS-------------LDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFS-D 281 (463)
T ss_pred cCCCc-------------ccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHH-H
Confidence 00000 000000111111111111111222122222211111111110112233 35788888888 6
Q ss_pred HHHHHHHHHHHhhhhhh-hhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcc
Q 048207 280 SALVTGGIGTVSAILPM-ILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFS 358 (466)
Q Consensus 280 ~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (466)
+.+.......++.++.. .+...++.|+....+...-.+....+.+.. ..|.......+ .. ++..
T Consensus 282 ~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~-------------~~w~~~~~~v~-~~-~~~~ 346 (463)
T KOG2816|consen 282 LLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT-------------ETWMMFAAGVV-VA-LAGI 346 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-------------cchhhhHHHHH-HH-hhcc
Confidence 77777777888877766 777788988877777777777777777652 22222222222 12 2223
Q ss_pred ccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048207 359 WGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF 405 (466)
Q Consensus 359 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
..+......+...+++.+|.++++...+..+.+.++|.+.+.+....
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33444566678888999999999999999999999999999887544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.6e-14 Score=138.81 Aligned_cols=141 Identities=11% Similarity=-0.038 Sum_probs=124.3
Q ss_pred hHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHHHHhc
Q 048207 37 LTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEM 116 (466)
Q Consensus 37 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 116 (466)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677899999999999999999999999999999999999999999988889999999998888999999999999
Q ss_pred CCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCCh
Q 048207 117 APPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETP 181 (466)
Q Consensus 117 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 181 (466)
+|.++|++++++......+|.+++|.+++.+... +...+|++.++..++..++..++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999998876652 256778888777777777777789875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-14 Score=132.95 Aligned_cols=354 Identities=13% Similarity=0.080 Sum_probs=203.0
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhh-----cchHHHHHHHHHHHHHHhhhhhc----cchhHHHH
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRAL-----GGKVSILIGGVAFLAGSALGGSA----FNIYMLIF 93 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~ 93 (466)
.|.+++++|+++++.....+...+...+ -+++|.++|.+ .||+-++++.++..++.+..+.. .+.....+
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~ 91 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV 91 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence 4567899999999999999988888877 67789999976 35556677777776666655543 35667777
Q ss_pred HHHHhhhhhhhhhhhhhHHHHhcCC--CcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHH
Q 048207 94 GRLLLGVGIDFGNQSVPLYLSEMAP--PKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILT 171 (466)
Q Consensus 94 ~r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 171 (466)
.-++..+|.......+.+++.|... ++.|+...+.......+|.+++..+++.+.+.. ++|..|.+.+++..+..
T Consensus 92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~---~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF---GPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC---CCeEEehHHHHHHHHHH
Confidence 7788899999999999999999984 334677788888888999999999998887754 48888888877666655
Q ss_pred HHhhc-ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHH-HHHHHHH
Q 048207 172 IGSLF-LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVM-AILIPFF 249 (466)
Q Consensus 172 ~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 249 (466)
+..++ .+|.+. +. .++.... .++ ..+..... .++.....++.++.+....... ...+...
T Consensus 169 ~~~~~~~~e~~~----~~--~~~~~~~----~~~-~~~~~~~~-------~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 230 (433)
T PF03092_consen 169 IVALFLLEERKV----RP--ADEVFSF----GKE-EVPCLFGS-------FREQLSELWRALQQRAIWQPILFFIFFFNL 230 (433)
T ss_pred HHHHHhhhhccc----cc--cchhhcc----ccc-ccchhhHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 44444 444110 00 0000000 000 00000000 0000112223332221111111 1111111
Q ss_pred HhcccchhHHhhHHHHHhhhC---CCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHH
Q 048207 250 QQVTGVNIISFYAPVLFRTIK---LSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIM 326 (466)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 326 (466)
... ......+|.. .+..+ +++...+ ....+..++.++|..+..+...+..-|+++....++..+..+.-....
T Consensus 231 ~~~-~~~a~~fy~~--~~~~~gp~fs~~f~~-~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv 306 (433)
T PF03092_consen 231 PPS-ISSASSFYFQ--TDALGGPHFSPSFYG-TLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLV 306 (433)
T ss_pred ccC-CCCccEEEEE--eccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEE
Confidence 111 0111011111 12233 5665555 455666666777777766665566666665544443332222111100
Q ss_pred HhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048207 327 AAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK 406 (466)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
...+..-+.++. +..+.-..+........+.|. ..+.+|+.|+...|+.+++..++.+++..++..+...+.+..+
T Consensus 307 -~~~n~~~Gi~d~--~f~lgd~~l~~~~~~i~~mP~-lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 307 -TRWNLDLGIPDQ--WFALGDTILEEVIGMIAFMPS-LVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred -EEEeeeeCcCCe--EEEEEhHHHHHHHHHHHHHHH-HHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000000011111 222223333334444455565 3444799999999999999999999999999999888887665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=130.76 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=126.2
Q ss_pred CcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc----chhHHHHHHHHhhhhhhhhhhh
Q 048207 33 DSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF----NIYMLIFGRLLLGVGIDFGNQS 108 (466)
Q Consensus 33 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~ 108 (466)
+.++.+...++..++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346779999999999999999999999999999999999999988877666642 2466778999999999988899
Q ss_pred hhHHHHhcCCCcccCchhhHHH-HHHHHHHHHHHHHhhhhcccCCC---cchHHHHHhhhHHHHHHH-HHhhcccCCh
Q 048207 109 VPLYLSEMAPPKCRGAFNIGFQ-VCVATGILSANLLNYGTQKIKGG---WGWKISLAMAAAPASILT-IGSLFLPETP 181 (466)
Q Consensus 109 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~---~~wr~~f~~~~~~~~~~~-~~~~~~~es~ 181 (466)
...++.|++|+++|++++++.+ ...++|.++||.+++.+.+..+. +|||..|.+.+++.++.. +..++++|+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999997 67889999999999998886543 579999998887766654 4445577764
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=119.17 Aligned_cols=355 Identities=11% Similarity=0.089 Sum_probs=222.9
Q ss_pred cccccc-ccCCcchhH-HHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 24 TKVSDY-CKFDSQLLT-SLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 24 ~~i~~~-~~~s~~~~g-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
|.+.+. .|+|..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++.+.+-+..++-|++
T Consensus 28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~ 107 (412)
T PF01770_consen 28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA 107 (412)
T ss_pred HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 334443 788888875 556666677888899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCCh
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETP 181 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 181 (466)
.+. ..+-.+++-...|+++-.++.+...++..+|..++..+|-.+....+ .+.+....+......+..+..+++|..+
T Consensus 108 ~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~-~sy~~L~~isl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 108 TAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG-VSYFQLNYISLASVSLALLIALFLPMPK 185 (412)
T ss_pred HHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 875 57778888888899998999999999999999999999887776443 4577777777766666777777888766
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhcc-ccCCcchH---HhhhhhhhhHHHHHHHHHHHHhcccchh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDS-KNINHPFK---KIIQRKYRPQLVMAILIPFFQQVTGVNI 257 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (466)
+-..-++++.++......+.+..++.+++.++..+..+.. ...+..++ .-++....++.++...++.....+++..
T Consensus 186 ~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~q 265 (412)
T PF01770_consen 186 RSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQ 265 (412)
T ss_pred cccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHH
Confidence 5433333211111100000000000000000000000000 00011111 2223444566677777777777788888
Q ss_pred HHhhHHHHHhhh---CCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCC
Q 048207 258 ISFYAPVLFRTI---KLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG 334 (466)
Q Consensus 258 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
+..|...+.++. +....-.+ ..-....+.+.++.+..|++-.+..+...+.++......+..++...
T Consensus 266 v~nYvQ~LW~~v~~~~~~~vYNG-~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~--------- 335 (412)
T PF01770_consen 266 VINYVQSLWDTVPPSDNESVYNG-AVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMS--------- 335 (412)
T ss_pred HHHHHHHHHHhcCCCCCCcccch-HHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 888888888776 22333344 66666677777788888888555555433333332222222222211
Q ss_pred CccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHH
Q 048207 335 GFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSL 393 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~ 393 (466)
..++.|......+++...+.........-+ +.....+.-|..+|+.+++..+...+
T Consensus 336 --~t~~Iwv~Y~~yIif~~~y~fliTiA~~qI-A~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 336 --FTGNIWVCYAGYIIFRSLYMFLITIASFQI-AKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred --HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccccceeeeeeeHHHHHHHHHHh
Confidence 124566666666666666555443333333 34445566677777777665554433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-13 Score=127.06 Aligned_cols=151 Identities=17% Similarity=0.104 Sum_probs=127.8
Q ss_pred cccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhh
Q 048207 25 KVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDF 104 (466)
Q Consensus 25 ~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~ 104 (466)
.+++++|+++.+.+++.+...++..++.+++|+++||+|||+.+..+.....+......++++.+.+++.|++.+++.+.
T Consensus 242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI 321 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34677899999999998888888889999999999999999988877766666655556678888888899999988888
Q ss_pred hhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccC
Q 048207 105 GNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179 (466)
Q Consensus 105 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 179 (466)
..+....+..|.+|+ +|++++++++....+|..+++.+++.+.+. ++|+..|++.+++.++..+..+++||
T Consensus 322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI---WNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 778888888999885 599999999999999999999999998875 45999999988888887777777665
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=114.71 Aligned_cols=236 Identities=12% Similarity=0.081 Sum_probs=152.4
Q ss_pred ccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhh
Q 048207 28 DYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQ 107 (466)
Q Consensus 28 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 107 (466)
+++|.+..|++.+....+....+..++.|.++||+|||+..++.+++.+++++.- ..++++.++++|++.|++.+....
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999654 568999999999999999999999
Q ss_pred hhhHH-HHhcCCCccc----CchhhHHH-HHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh-hcccCC
Q 048207 108 SVPLY-LSEMAPPKCR----GAFNIGFQ-VCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS-LFLPET 180 (466)
Q Consensus 108 ~~~~~-i~~~~~~~~r----~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es 180 (466)
.-.++ +.|.-..+.+ +..++... ...++-.+.+..++..+.+..+ .|-..+|....+..++..++. ...+|.
T Consensus 141 ~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 141 AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPEN 219 (354)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhccccc
Confidence 88886 4554221111 11122111 1122223344444444444332 334678888877666655443 334554
Q ss_pred hhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHh
Q 048207 181 PNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISF 260 (466)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
+.. ..++.+..++ .+..++.+.++ ++.+....+..+.....+.....
T Consensus 220 yg~---~~~~~~~~~~---------------------------~~~a~~~i~~d---~ril~LG~~qslFE~smy~FVfl 266 (354)
T PF05631_consen 220 YGD---TSSSSSLSGS---------------------------FREAWRAILSD---PRILLLGLIQSLFEGSMYLFVFL 266 (354)
T ss_pred CCC---cccccchHHH---------------------------HHHHHHHHHcC---chhHHHHHHHHHHHHHHHHheee
Confidence 320 0000000000 01112222222 45666666777777777777778
Q ss_pred hHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 048207 261 YAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADK 301 (466)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 301 (466)
|.|.+-.+ -.....+ .++..+.++.++|+.+..++..+
T Consensus 267 WtPaL~~~--~~~~P~G-lIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 267 WTPALDPD--DEELPLG-LIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred eeceecCC--CCCCCch-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 88877511 1122344 78888889999999888665544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=128.16 Aligned_cols=173 Identities=17% Similarity=0.102 Sum_probs=125.8
Q ss_pred HHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHH
Q 048207 244 ILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIG 323 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 323 (466)
..+..+...........+.|.+.++.|.+..+.+ +......++.+++.++.|+++||+|||+.+..+..+..++.++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 100 (398)
T TIGR00895 22 SFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLG-FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCA 100 (398)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHH-HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333345566677888888999888877 888888899999999999999999999999888877777666655
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 048207 324 SIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLC 403 (466)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
.. ++.+...+...+.+.+.+...... ..+..|.+|++.|++++++.+....++..+++.+.+.+.+
T Consensus 101 ~~-------------~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (398)
T TIGR00895 101 LA-------------TNVTQLLILRFLAGLGLGGLMPNL-NALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP 166 (398)
T ss_pred Hc-------------cchHHHHHHHHHHhcccccchhhH-HHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence 43 223344444555555555444444 5666899999999999999999999999999999999998
Q ss_pred hcccceehhhH-HHHHHHHHhhheecccC
Q 048207 404 HFKAGVFFFFG-GWLTVMTTFVHFFLPET 431 (466)
Q Consensus 404 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 431 (466)
..++...+.+. .+..+...+...+.|++
T Consensus 167 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 167 VFGWRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred cccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 88876665555 34444444455556654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-13 Score=118.85 Aligned_cols=179 Identities=17% Similarity=0.154 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHH
Q 048207 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVS 318 (466)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 318 (466)
+.+....+.+......--.++.-.|.+.++.+++..+.+ .+.+.+.+..-++.++.|.++||.+.|+.+..++++++++
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG-~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ 107 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLG-ILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIV 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHH
Confidence 344444444443333334466677888889899999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 048207 319 QVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTF 398 (466)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 398 (466)
.+++++. +..+...++..+-+.+.+.+++|....+ +.-+|++.||+..++-++..++|+.+.|++.
T Consensus 108 nil~Gfs-------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i-~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 108 NILFGFS-------------PSLFLFAVLWVLNGWFQGMGWPPCARTI-THWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHHhhh-------------hHHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 9999876 3466677777888889999999986666 6999999999999999999999999999999
Q ss_pred --HHHHhhcccceehhhH-HHHHHHHHhhheecccCC
Q 048207 399 --LAMLCHFKAGVFFFFG-GWLTVMTTFVHFFLPETK 432 (466)
Q Consensus 399 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 432 (466)
+.+.++.++...+++. +++++++++.++..+++.
T Consensus 174 ~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 174 LLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8888887766655554 444555555666665543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.4e-13 Score=127.07 Aligned_cols=147 Identities=16% Similarity=0.131 Sum_probs=125.7
Q ss_pred cCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhh
Q 048207 31 KFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVP 110 (466)
Q Consensus 31 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 110 (466)
+.+..+.|++.++..++..++.+++|+++||+|||+.+..+..+.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHhcCCCcccCchhhH-HHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh-hcccCC
Q 048207 111 LYLSEMAPPKCRGAFNIG-FQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS-LFLPET 180 (466)
Q Consensus 111 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es 180 (466)
.++.|.+|++.|+...+. ++....+|.++++.+.+.+.+.. |||..|.+.++..++..++. ..+++.
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~---G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI---GFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999989887655 67778899999999999988753 59999998877766554443 344443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=124.04 Aligned_cols=173 Identities=13% Similarity=0.106 Sum_probs=124.9
Q ss_pred HHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHH
Q 048207 244 ILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIG 323 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 323 (466)
..+..+...........+.|.+.++.|.+..+.+ ...+...++..+++++.|++.||+|||+.+.++.++..++.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 106 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIG-LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFG 106 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHH
Confidence 3333333333334566778889999999988888 888899999999999999999999999999988888888777665
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 048207 324 SIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLC 403 (466)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
.. ++.+...+...+.+.+.+..+.+. ..+..|.+|+++|++++|+.+....++..+++.+.+.+.+
T Consensus 107 ~~-------------~~~~~l~~~~~l~g~~~g~~~~~~-~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 107 FS-------------SSLWAFALLWVLNAFFQGWGWPVC-AKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred HH-------------hHHHHHHHHHHHHHHHHHccchHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 223333333344455555444444 5566899999999999999999999999999999999998
Q ss_pred hcccceehhhHHHH-HHHHHhhheecccC
Q 048207 404 HFKAGVFFFFGGWL-TVMTTFVHFFLPET 431 (466)
Q Consensus 404 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 431 (466)
..++...+...++. .+...+..+.++|+
T Consensus 173 ~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 173 HYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88877665554433 33333334444543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-12 Score=121.18 Aligned_cols=147 Identities=25% Similarity=0.265 Sum_probs=134.9
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchH-HHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhh
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKV-SILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFG 105 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 105 (466)
++.+|.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.++..+.++.+.+.+..++.|++.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 282 (352)
T cd06174 203 QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFA 282 (352)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcc
Confidence 3345889999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc
Q 048207 106 NQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF 176 (466)
Q Consensus 106 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 176 (466)
.+...+++.|..|+++|++.+++.+....+|..+++.+.+.+.+. .+|+..+++.+++.++..+..++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 283 FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---GGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcchHHHHHHHHHHHHHHHhee
Confidence 999999999999999999999999999999999999999988764 45999999999888877665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=122.22 Aligned_cols=178 Identities=11% Similarity=0.119 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHH
Q 048207 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVS 318 (466)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 318 (466)
+.+....+..+.............|.+.++.+.+..+.+ +..+...++..++.++.|++.||+|||+.+..+.++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 90 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAA-SLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG 90 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444554444556666777888889999998888 8888999999999999999999999999999888777777
Q ss_pred HHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 048207 319 QVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTF 398 (466)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 398 (466)
.++..+. ++.+..+....+.+.+.+...... ..+..|.+|+++|+.+.++.+....+|..+++.+.
T Consensus 91 ~~~~~~~-------------~~~~~l~~~~~l~G~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 156 (405)
T TIGR00891 91 TLACGFA-------------PGYITMFIARLVIGIGMGGEYGSS-AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVY 156 (405)
T ss_pred HHHHHHh-------------ccHHHHHHHHHHHHhhhhhhhHHH-HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6665543 223444445555555555444433 55567999999999999999999999999999999
Q ss_pred HHHHhhcc--cceehhhHHHHHHHHHhhheecccC
Q 048207 399 LAMLCHFK--AGVFFFFGGWLTVMTTFVHFFLPET 431 (466)
Q Consensus 399 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
+.+.+..+ +...+...++..++..+.....||+
T Consensus 157 ~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 157 SLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88887665 5544544444444444444445554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=122.07 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=128.3
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGID 103 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g 103 (466)
|...++.|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.....++.++..+.++.+.+.+..++.|++.+
T Consensus 244 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 323 (406)
T PRK11551 244 PSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVV 323 (406)
T ss_pred HHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 44456678999999999999999999999999999999999999988877777777777778888888888899999888
Q ss_pred hhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc
Q 048207 104 FGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL 177 (466)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 177 (466)
...+...+++.|.+|+++|++..++.+....+|..++|.+++.+.+.. .+|...++......++..+..+++
T Consensus 324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--CchHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999887643 246677776666665555554444
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=122.07 Aligned_cols=162 Identities=19% Similarity=0.093 Sum_probs=122.5
Q ss_pred hhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 048207 256 NIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG 335 (466)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
.......|.+.++.|.+..+.+ +......++..++.++.|+++||+|||+.+..+.++..++..++...
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---------- 79 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYG-YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---------- 79 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHH-HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH----------
Confidence 4455566777788999988888 88999999999999999999999999999999888877777766554
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHH
Q 048207 336 FSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGG 415 (466)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (466)
.+.+...+..++.+.+.+...... ..+..|.+|+++|++++++.+....++..+++.+.+.+.+..++...+...+
T Consensus 80 ---~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (399)
T TIGR00893 80 ---GAYVSLYILRVLLGAAEAPFFPGI-ILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEG 155 (399)
T ss_pred ---cCHHHHHHHHHHHHHHHHhhhhHH-HHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 234455555566666655544444 5666899999999999999999999999999999999888888766555544
Q ss_pred HHHH-HHHhhheecccCC
Q 048207 416 WLTV-MTTFVHFFLPETK 432 (466)
Q Consensus 416 ~~~~-~~~~~~~~~~~~~ 432 (466)
+..+ ...+..+..++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 156 VLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHhhheecCCC
Confidence 4333 3333444455543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-12 Score=119.93 Aligned_cols=150 Identities=15% Similarity=0.120 Sum_probs=127.2
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFG 105 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 105 (466)
+++++|.++.+.+++.+.......++.++.|++.||+|||+++.++..+..+..+...+.++.+.+.+.+++.|++.+..
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 305 (375)
T TIGR00899 226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGIL 305 (375)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999988888888889999999999999999998888777766666667788888888999999999988
Q ss_pred hhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccC
Q 048207 106 NQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179 (466)
Q Consensus 106 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 179 (466)
.+....++.|..|+ +++++.++.+....+|..++|.+++.+.+. .||+..|++.++..++..+...+++|
T Consensus 306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER---WSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHheecC
Confidence 88888899999875 567999999999999999999999988775 35999999988887777766665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-12 Score=119.15 Aligned_cols=169 Identities=11% Similarity=0.107 Sum_probs=116.1
Q ss_pred HHHHhcccchhHHhhHHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHH
Q 048207 247 PFFQQVTGVNIISFYAPVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSI 325 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 325 (466)
..++...+.+....+.|.++ +++|++..+.+ +..+...++.++++++.|+++||+|||+.+..+.+...++.+.+.+.
T Consensus 15 ~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~ 93 (395)
T PRK10054 15 SSLLLTIGRGATLPFMTIYLSRQYSLSVDLIG-YAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence 33334444566666777766 56899998888 88888889999999999999999999999888887777766655543
Q ss_pred HHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048207 326 MAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF 405 (466)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
++.+..+....+.+...+. ..+....+..|..|++.|+++.|+.+...++|..++|++.+.+.+ .
T Consensus 94 -------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~ 158 (395)
T PRK10054 94 -------------NNVTLVVLFFALINCAYSV-FSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q 158 (395)
T ss_pred -------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 2223333333333333332 233335666799999999999999999999999999999888775 5
Q ss_pred ccceehhhHHHHHHHHHh-hheecccC
Q 048207 406 KAGVFFFFGGWLTVMTTF-VHFFLPET 431 (466)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~-~~~~~~~~ 431 (466)
++...+...+++.++..+ ..+..++.
T Consensus 159 g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 159 SINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 655555544444444433 33334443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=121.85 Aligned_cols=142 Identities=12% Similarity=-0.041 Sum_probs=123.0
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccch--hHHHHHHHHhhhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNI--YMLIFGRLLLGVGID 103 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g 103 (466)
..++++.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++..+..++.++..+.++. ..++...++.|++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 310 (377)
T TIGR00890 231 YGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWG 310 (377)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc
Confidence 346678888899999999999999999999999999999999999999999988888777643 335567788898888
Q ss_pred hhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHH
Q 048207 104 FGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASIL 170 (466)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 170 (466)
...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+. .||++.|.+.++..++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 311 GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE---IGFEYTFIVTGAFALTS 374 (377)
T ss_pred cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh---hchhhHHHHHHHHHHHh
Confidence 88888888999999999999999999999999999999999988765 45999998887766654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-12 Score=119.99 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=122.3
Q ss_pred hhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHHHHh
Q 048207 36 LLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSE 115 (466)
Q Consensus 36 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 115 (466)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45667788889999999999999999999999999999999988888888898888899999999999888888888889
Q ss_pred cCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccC
Q 048207 116 MAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179 (466)
Q Consensus 116 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 179 (466)
..|+++|+++.++++....+|..+++.+.+.+.+. .||+..|++.++..++..+..+++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW---FGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999988888887765 45999999988877776666555544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.4e-12 Score=118.64 Aligned_cols=180 Identities=13% Similarity=0.042 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHH
Q 048207 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVS 318 (466)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 318 (466)
+......+.+..............|.+.++++.+..+.+ +..+...++..+++++.|++.||+|||+.+..+.++..++
T Consensus 8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 8 RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFG-LAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 344444444444444455566667777788999998888 8889999999999999999999999999998888888877
Q ss_pred HHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 048207 319 QVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTF 398 (466)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 398 (466)
.++..+. ++.+.....-.+.+.+.+... +....+..|.+|+++|++++++.+....+|..+++.+.
T Consensus 87 ~~~~~~~-------------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 152 (412)
T TIGR02332 87 STATMFA-------------TGPESLYLLRILVGIAEAGFL-PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILS 152 (412)
T ss_pred HHHHHHh-------------cCHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776654 223344444555555555443 33355668999999999999999999999999999998
Q ss_pred HHHHhh------cccceehhhHH-HHHHHHHhhheecccCCC
Q 048207 399 LAMLCH------FKAGVFFFFGG-WLTVMTTFVHFFLPETKN 433 (466)
Q Consensus 399 ~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 433 (466)
+.+.+. .+|...+...+ ...+...+.++++||+++
T Consensus 153 ~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 153 GYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 888642 46665555543 333444455566677653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.5e-12 Score=118.01 Aligned_cols=164 Identities=20% Similarity=0.132 Sum_probs=119.9
Q ss_pred cchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC
Q 048207 254 GVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333 (466)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
.........|.+.++.|.+..+.+ +..+...++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------- 90 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQ-MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-------- 90 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--------
Confidence 344455566778889999988888 88899999999999999999999999999998887777777666543
Q ss_pred CCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhh
Q 048207 334 GGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFF 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
++.+...+..++.+.+.+...... ..+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++...+..
T Consensus 91 -----~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 91 -----NNIETLLVLRFVQAFGASAGSVIS-QALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred -----ccHHHHHHHHHHHHcchhHHHHHH-HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 223344444455555544443333 55668999999999999999999999999999999998888776655444
Q ss_pred HH-HHHHHHHhhheecccCC
Q 048207 414 GG-WLTVMTTFVHFFLPETK 432 (466)
Q Consensus 414 ~~-~~~~~~~~~~~~~~~~~ 432 (466)
.+ ...+......+..||++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 33 33333344444555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-12 Score=119.52 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=118.7
Q ss_pred chhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCC
Q 048207 255 VNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG 334 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
...+....|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 80 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLG-LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--------- 80 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHH-HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh---------
Confidence 34556667878888899998888 88899999999999999999999999999999988888877776654
Q ss_pred CccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHH-HHHHHHhhcccceehhh
Q 048207 335 GFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQ-TFLAMLCHFKAGVFFFF 413 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 413 (466)
.+.+..++...+.+.+.+...+.. ..+..|.+|+++|+.+.++.+....++..++++ +.+.+.+..++...+..
T Consensus 81 ----~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 81 ----TSLWVMAALWALNGIFQGMGWPPC-GRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred ----hhHHHHHHHHHHHHhhccccCCch-HHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 223444455555555555444443 566689999999999999999999999999995 44555555565554444
Q ss_pred HH-HHHHHHHhhheecccCC
Q 048207 414 GG-WLTVMTTFVHFFLPETK 432 (466)
Q Consensus 414 ~~-~~~~~~~~~~~~~~~~~ 432 (466)
.+ +..+..++..+..++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 156 PGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHHheeeCCCc
Confidence 33 33444445555555543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=119.75 Aligned_cols=152 Identities=14% Similarity=-0.037 Sum_probs=114.7
Q ss_pred cccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHh--hhhhccchhHHHHHHHHhhhhh
Q 048207 25 KVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSA--LGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 25 ~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~--~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.+++++|+|..+.++..+...++..++.+++|+++||+|||+.+..+..+..++.. .....++.+.+.+.+++.|++.
T Consensus 284 yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 363 (467)
T PRK09556 284 YAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLV 363 (467)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999887665544443332 2233456667778888888654
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHH-HHHHHHHHhhhhccc---------CCCcchHHHHHhhhHHHHHHHH
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVAT-GILSANLLNYGTQKI---------KGGWGWKISLAMAAAPASILTI 172 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~~~~~---------~~~~~wr~~f~~~~~~~~~~~~ 172 (466)
............|.+|+++|+++.++.+....+ |..++|.+.+.+.+. ....+|+..|++..+..++..+
T Consensus 364 ~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~ 443 (467)
T PRK09556 364 FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCIC 443 (467)
T ss_pred hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHH
Confidence 444434446677999999999999999988886 778899888888771 0124699999888776666555
Q ss_pred Hhhc
Q 048207 173 GSLF 176 (466)
Q Consensus 173 ~~~~ 176 (466)
..++
T Consensus 444 ~~~~ 447 (467)
T PRK09556 444 LMAI 447 (467)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=116.90 Aligned_cols=168 Identities=16% Similarity=0.042 Sum_probs=119.2
Q ss_pred cchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC
Q 048207 254 GVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333 (466)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
.........|.+.++.+.+..+.+ .......++.++++++.|+++||+|||+.+..+..+..++...+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~----- 105 (417)
T PRK10489 32 GLGLLGVAVPVQIQMMTGSTLQVG-LSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL----- 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc-----
Confidence 345566677888888888887777 88999999999999999999999999999998877777666554432110
Q ss_pred CCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhh
Q 048207 334 GGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFF 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
..+..+......++.+.+.+....+. ..+..|..|+++|+++.++.+....++..+++.+.+.+.+..++...+..
T Consensus 106 ---~~~~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~ 181 (417)
T PRK10489 106 ---PEPSLLAIYLLGLWDGFFGSLGVTAL-LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL 181 (417)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 11222333334444444444333343 44557999999999999999999999999999999999887776655555
Q ss_pred HHHHHHHHHhhheecccC
Q 048207 414 GGWLTVMTTFVHFFLPET 431 (466)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~ 431 (466)
.++..+...+..+.+|+.
T Consensus 182 ~~~~~~~~~~~~~~l~~~ 199 (417)
T PRK10489 182 AAAGTFITLLPLLRLPAL 199 (417)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 555555555555555554
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-12 Score=121.06 Aligned_cols=144 Identities=10% Similarity=-0.048 Sum_probs=119.6
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhh--cchHHHHH--HHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRAL--GGKVSILI--GGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~l~~--~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.+++|.+..+.+++.++..++..++.++.|+++||. ++|+...+ +..+.+++.+++.+.++++.+++.+++.|++.
T Consensus 268 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~ 347 (455)
T TIGR00892 268 AKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSF 347 (455)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999983 34443333 34444555666677889999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHH
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTI 172 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 172 (466)
+...+...+++.|.+|++++++.+++++....+|.++||.+++.+.+..+ +|++.|++.++..++..+
T Consensus 348 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 348 GSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred chHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876532 499999988876665544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=116.34 Aligned_cols=137 Identities=12% Similarity=0.018 Sum_probs=120.9
Q ss_pred hHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHHHHhc
Q 048207 37 LTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEM 116 (466)
Q Consensus 37 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 116 (466)
.+.+.+++.++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 46667777888889999999999999999999999998888888888888899999999999999999999999999999
Q ss_pred CCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc
Q 048207 117 APPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF 176 (466)
Q Consensus 117 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 176 (466)
.|+++|++.+++......+|..+||.+++.+.+. .+|++.|++.++..++..+..++
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN---YGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988775 45999999998887776655443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=117.21 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=118.1
Q ss_pred HHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHH
Q 048207 243 AILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMI 322 (466)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 322 (466)
...+................|.+.++.+.++.+.+ ...+...++..++.++.|+++||+|||+.+..+.+...++.+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 100 (426)
T PRK12307 22 SAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGA-FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLS 100 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 33333443334445556666777788999988888 88889999999999999999999999999999988888887766
Q ss_pred HHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048207 323 GSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAML 402 (466)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 402 (466)
.+. ++.+...+.-.+.+.+.+...... ..+..|.+|++.|+++.++......+|..+++.+.+.+.
T Consensus 101 ~~~-------------~~~~~l~~~r~l~G~g~g~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 101 GLA-------------SGVIMLTLSRFIVGMGMAGEYACA-STYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred HHH-------------hHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 654 223444445555555544433333 555679999999999999999999999999998888888
Q ss_pred hhcccceehhhHHH
Q 048207 403 CHFKAGVFFFFGGW 416 (466)
Q Consensus 403 ~~~~~~~~~~~~~~ 416 (466)
+..++...+.+...
T Consensus 167 ~~~~w~~~f~i~~~ 180 (426)
T PRK12307 167 EAYGWRAAFFVGLL 180 (426)
T ss_pred ccCCHHHHHHHHHH
Confidence 87777665555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=115.03 Aligned_cols=160 Identities=11% Similarity=0.032 Sum_probs=116.2
Q ss_pred hHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCc
Q 048207 257 IISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGF 336 (466)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
......|.+.+++|.+..+.+ +..+...++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 94 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVG-LMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA----------- 94 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 344456888889999999888 88888888889999999999999999999999888888877766554
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHH
Q 048207 337 SIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGW 416 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (466)
++.+..++.-++.+.+.+... +....+..|.+|+++|+.++|+......++..++|++.+.+.+..++...+...++
T Consensus 95 --~~~~~l~~~r~~~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 171 (390)
T PRK03545 95 --WNFTVLLISRIGIAFAHAIFW-SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG 171 (390)
T ss_pred --ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence 223334444444444433322 33345567999999999999999999999999999999998888887665555444
Q ss_pred HHHHH-HhhheecccC
Q 048207 417 LTVMT-TFVHFFLPET 431 (466)
Q Consensus 417 ~~~~~-~~~~~~~~~~ 431 (466)
..+.. .......|+.
T Consensus 172 ~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 172 GALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 33333 3333344543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=115.61 Aligned_cols=137 Identities=14% Similarity=0.086 Sum_probs=120.5
Q ss_pred hhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHHHHh
Q 048207 36 LLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSE 115 (466)
Q Consensus 36 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 115 (466)
+.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+...+.+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 329 (392)
T PRK12382 250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK 329 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34666777888889999999999999999999999999999998888888898888899999999999888888888999
Q ss_pred cCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhh
Q 048207 116 MAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSL 175 (466)
Q Consensus 116 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 175 (466)
.+|+++|+++.++.+....+|..++|.+.+.+.+.. ||+..|.+.++..++..+..+
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 330 RVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF---GYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888754 599999998877776655443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.6e-12 Score=116.32 Aligned_cols=159 Identities=14% Similarity=0.048 Sum_probs=117.9
Q ss_pred chhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCC
Q 048207 255 VNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG 334 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
........|.+..+.+.+..+.+ ...+...++.+++.++.|+++||+|||+.+..+..+..++..+.......
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------ 87 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLS-LAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL------ 87 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc------
Confidence 44555666778888888888888 88899999999999999999999999999998887777766665544210
Q ss_pred CccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhH
Q 048207 335 GFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFG 414 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (466)
+..+.+...+...+.+.+.+...++. ..+..|.+|+++|+.++++.+....++..+++.+.+.+.+..++...+...
T Consensus 88 --~~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 88 --GGLNIWQVYVLAGILAIAQAFFTPAY-QAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 01134444555555555555444333 566689999999999999999999999999999999998888876655555
Q ss_pred HHHHHHHHh
Q 048207 415 GWLTVMTTF 423 (466)
Q Consensus 415 ~~~~~~~~~ 423 (466)
++..++..+
T Consensus 165 ~~~~~~~~~ 173 (365)
T TIGR00900 165 AVGFAISAL 173 (365)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=114.83 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=116.7
Q ss_pred HHHHhcccchhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhc-CCeeeehhhhHHHHHHHHHHHH
Q 048207 247 PFFQQVTGVNIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKL-GRKVLFLLGGIQMLVSQVMIGS 324 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~ 324 (466)
........++.+..++|.|++ +.|++..++. .....+.....++.+++|+++||+ |||+.+.++.++..++.+++..
T Consensus 17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~-~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~ 95 (493)
T PRK15462 17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAY-ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA 95 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH
Confidence 333344456778888888875 4689988888 778888888899999999999998 9999999888888877665542
Q ss_pred HHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcccccccccccccccccc--chhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048207 325 IMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLE--IRSAGQSITVAVGLLFTSLVAQTFLAML 402 (466)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 402 (466)
.. ...........+...+.+...+.. ..+.+|.+|++ .|.++.++.++..++|+.++|.+.+.+.
T Consensus 96 ~~------------~~~~~~~l~l~li~iG~G~~~~~~-~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 96 SE------------IHPSFLYLSLAIIVCGYGLFKSNV-SCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred hh------------cchhHHHHHHHHHHHhcccccccH-HHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 10 111112222222323333333333 55668999976 6999999999999999999999999999
Q ss_pred hhcccceehhhHHHHHHHHHhhh
Q 048207 403 CHFKAGVFFFFGGWLTVMTTFVH 425 (466)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~ 425 (466)
+..|+...+..+++..+++++.+
T Consensus 163 ~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 163 EEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred hhhChHHHHHHHHHHHHHHHHHH
Confidence 88887666555554444444443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-11 Score=114.31 Aligned_cols=155 Identities=12% Similarity=0.017 Sum_probs=115.2
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhh---c-cchhHHHHHHHHhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS---A-FNIYMLIFGRLLLGVG 101 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~-~~~~~l~~~r~l~G~~ 101 (466)
+++++|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.|++
T Consensus 277 ~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 356 (438)
T PRK09952 277 STQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIA 356 (438)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 35667777776666666667777888999999999999999998887766555443322 2 2344555566777888
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHH-HHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCC
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQ-VCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 180 (466)
.+...+...+++.|.+|.+.|+...++.. .+..+|..++|.+.+.+.+..+ .+|+..+...++.+++..+..+.++|+
T Consensus 357 ~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 357 HDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 88888888999999999999988888854 4455888899999888766432 348888888777777776666666664
Q ss_pred h
Q 048207 181 P 181 (466)
Q Consensus 181 ~ 181 (466)
.
T Consensus 436 ~ 436 (438)
T PRK09952 436 Q 436 (438)
T ss_pred c
Confidence 3
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-11 Score=112.79 Aligned_cols=141 Identities=10% Similarity=0.016 Sum_probs=125.2
Q ss_pred ccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhh
Q 048207 28 DYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQ 107 (466)
Q Consensus 28 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 107 (466)
+|+|.++.+.|.+.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.++++|++.+...+
T Consensus 233 ~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~ 312 (382)
T TIGR00902 233 QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHL 312 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcCCCcccCchhhHHH-HHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH
Q 048207 108 SVPLYLSEMAPPKCRGAFNIGFQ-VCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG 173 (466)
Q Consensus 108 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 173 (466)
....++.+. |+++|++..++++ ...++|..+++.+++.+.+.. |+ ..|++.++++++..++
T Consensus 313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---GA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHHH
Confidence 999999998 9889999999986 577899999999999998864 45 5566666665554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=114.87 Aligned_cols=174 Identities=14% Similarity=0.153 Sum_probs=120.9
Q ss_pred HHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHH
Q 048207 244 ILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIG 323 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 323 (466)
..........+........|.+.++.+.+..+.+ ...+...++..++.++.|+++||+|||+.+..+.....++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGLPRIAADLNASEAQLH-IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 3333344444455566778888899999988887 888888999999999999999999999999888877777766655
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 048207 324 SIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLC 403 (466)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
.. ++.+.......+.+.+.+.... ....+..|.+|+++|+++.++.+....++..++|.+.+.+.+
T Consensus 87 ~~-------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~ 152 (392)
T PRK10473 87 LA-------------ETSSLFLAGRFLQGIGAGCCYV-VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML 152 (392)
T ss_pred Hh-------------CcHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 1223333333444444333333 335566899999999999999999999999899988888777
Q ss_pred hcccceehhh-HHHHHHHHHhhheecccCC
Q 048207 404 HFKAGVFFFF-GGWLTVMTTFVHFFLPETK 432 (466)
Q Consensus 404 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 432 (466)
..++...+.. +.+..+...+.....+|++
T Consensus 153 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 153 KFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 7776554433 3333444444445556554
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-11 Score=113.51 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=107.2
Q ss_pred HHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCcc
Q 048207 258 ISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFS 337 (466)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
+....|.+.++ +.+..+.+ ...+...++..+++++.|+++||+|||+.+..+.++..++.+.+.+... .
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g-~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---------~ 116 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---------A 116 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---------c
Confidence 44566766666 88888888 8889999999999999999999999999999888888777776654310 0
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH-HHHhhcccceehhhH-H
Q 048207 338 IGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFL-AMLCHFKAGVFFFFG-G 415 (466)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~ 415 (466)
....+..+....+.+.+.+...++.. ....|.+|++.|++++|+.+....+++.+.+++.+ .+....+|...+.+. .
T Consensus 117 ~~~~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~ 195 (452)
T PRK11273 117 TSSIAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAF 195 (452)
T ss_pred cccHHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11233334444455555555544443 34468899999999999999888888765555543 332233554444433 3
Q ss_pred HHHHHHHhhheecccC
Q 048207 416 WLTVMTTFVHFFLPET 431 (466)
Q Consensus 416 ~~~~~~~~~~~~~~~~ 431 (466)
+..+..++..++++|+
T Consensus 196 ~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 196 AAILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHHccCC
Confidence 3334344445555554
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-11 Score=112.78 Aligned_cols=166 Identities=10% Similarity=-0.001 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHH
Q 048207 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVS 318 (466)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 318 (466)
+..+...+..+.............|.+.++++.+..+.+ ...+...++..++.++.|++.||+|||+.+..+..+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~ 85 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMS-NTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILA 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444444444333345566677888889999988888 8888889999999999999999999999988887777776
Q ss_pred HHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 048207 319 QVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTF 398 (466)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 398 (466)
.++.... ++.+...+...+.+.+.+...... ..++.|.+|++.|+.+.+..+....+++.++|.+.
T Consensus 86 ~~l~~~~-------------~~~~~~~~~~~l~G~~~g~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 151 (394)
T PRK03699 86 VAGLMFS-------------HSLALFSIAMFVLGVVSGITMSIG-TFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA 151 (394)
T ss_pred HHHHHHc-------------chHHHHHHHHHHHHHhhHhhccch-hHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665543 223344444455555555444433 45557999999999999998888888889999888
Q ss_pred HHHHhh-cccceehhhHHHHHH
Q 048207 399 LAMLCH-FKAGVFFFFGGWLTV 419 (466)
Q Consensus 399 ~~~~~~-~~~~~~~~~~~~~~~ 419 (466)
+.+.+. .+|...+...++..+
T Consensus 152 ~~l~~~~~gw~~~f~~~~~~~~ 173 (394)
T PRK03699 152 AYLLARSIEWYWVYACIGLVYV 173 (394)
T ss_pred HHHHhccccHHHHHHHHHHHHH
Confidence 887654 466655554443333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-11 Score=117.67 Aligned_cols=166 Identities=12% Similarity=0.120 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHH
Q 048207 240 LVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQ 319 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 319 (466)
.+....+..+.............|.+.++++.+..+.+ .......++..++.++.|++.||+|||+.+..+.++..++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 99 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAA-SLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGT 99 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 33334444444444455566667888888999988888 78888889999999999999999999999988888777777
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 048207 320 VMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFL 399 (466)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 399 (466)
+++.+. .+.+...+...+.+.+.+...... ..+..|.+|++.|+.+.++......++..+++.+.+
T Consensus 100 ~~~~~~-------------~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 100 LACGFA-------------PGYWTLFIARLVIGMGMAGEYGSS-ATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHH-------------hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666653 223344444445554444333333 455679999999999999999999999999999999
Q ss_pred HHHhhcccceehhhHHHHHHH
Q 048207 400 AMLCHFKAGVFFFFGGWLTVM 420 (466)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~ 420 (466)
.+.+..++...+...++..+.
T Consensus 166 ~l~~~~~w~~~f~~~~~~~~~ 186 (496)
T PRK03893 166 LVVPVWGWRALFFIGILPIIF 186 (496)
T ss_pred HHhccCCHHHHHHHHHHHHHH
Confidence 998888877655554433333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-11 Score=112.01 Aligned_cols=147 Identities=11% Similarity=0.059 Sum_probs=113.8
Q ss_pred hHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCc
Q 048207 257 IISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGF 336 (466)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
......|.+.++.|.++.+.+ ...+...++..+++++.|++.||+|||+.+..+.++..++.++....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------- 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAG-QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA----------- 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 334456778889999998888 88888899999999999999999999999999998888877665543
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHH
Q 048207 337 SIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGW 416 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (466)
++.+..++.-.+.+.+.+... +....++.|.+|+++|+.+.++......++..++|++.+.+.+..++...+...+.
T Consensus 106 --~~~~~l~~~r~l~G~~~g~~~-~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 182 (394)
T PRK10213 106 --NSFSLLLIGRACLGLALGGFW-AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAV 182 (394)
T ss_pred --ChHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 234444555555555555433 34456668999999999999999999999999999999999988887665555443
Q ss_pred HH
Q 048207 417 LT 418 (466)
Q Consensus 417 ~~ 418 (466)
..
T Consensus 183 l~ 184 (394)
T PRK10213 183 MG 184 (394)
T ss_pred HH
Confidence 33
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-11 Score=113.63 Aligned_cols=181 Identities=13% Similarity=0.086 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHH
Q 048207 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVS 318 (466)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 318 (466)
+.++...+...........+....|.+.+ .|.+..+.+ +......++..++.++.|+++||+|||+.+..+.++..++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 104 (438)
T TIGR00712 27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELG-FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV 104 (438)
T ss_pred HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhH-HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence 33343434333333323334455565554 588888888 8888999999999999999999999999988887777777
Q ss_pred HHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 048207 319 QVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTF 398 (466)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 398 (466)
.+.+..... .....+.......+.+.+.+..+.+. .....|.+|+++|++++|+.+....+++.+++++.
T Consensus 105 ~~~~~~~~~---------~~~~~~~l~~~~~l~g~~~g~~~~~~-~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~ 174 (438)
T TIGR00712 105 MLLMGFVPW---------ATSSIAIMFVLLFLNGWFQGMGWPPC-GRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV 174 (438)
T ss_pred HHHHhcccc---------ccchHHHHHHHHHHHHHHhhcchHHH-HHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence 665543210 00112223333444455555544444 34447899999999999999999999999999888
Q ss_pred HHHHhh-cccceehhhH-HHHHHHHHhhheecccC
Q 048207 399 LAMLCH-FKAGVFFFFG-GWLTVMTTFVHFFLPET 431 (466)
Q Consensus 399 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 431 (466)
+...+. .+|...+... .+..+..++.+++.+|+
T Consensus 175 ~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 175 LLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 765543 4565555443 33344344445555554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-11 Score=112.24 Aligned_cols=147 Identities=12% Similarity=-0.011 Sum_probs=119.4
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGID 103 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g 103 (466)
|...++.|.+.++.+++.+...++..+++++.|++.||+|||+++..+..+..++.+... + .......+++.|++..
T Consensus 224 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~ 300 (381)
T PRK03633 224 PLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGF 300 (381)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHH
Confidence 333455688999999999999999999999999999999999999988888877665443 2 2344557788888877
Q ss_pred hhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc
Q 048207 104 FGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF 176 (466)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 176 (466)
...|...+++.|..|+++++...+......++|.++||.+++.+.+.. +|++.|.+.+...++..+..+.
T Consensus 301 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~---g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 301 TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY---SDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHh
Confidence 788999999999999888888888888899999999999999988754 4999999887777665554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-11 Score=114.89 Aligned_cols=170 Identities=12% Similarity=0.086 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhcccchhHHhhHHHHHhh---hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCeeeehhhhHHHH
Q 048207 241 VMAILIPFFQQVTGVNIISFYAPVLFRT---IKLSENTSLLMSALVTGGIGTVSAILPMILADK-LGRKVLFLLGGIQML 316 (466)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~ 316 (466)
++.+....+....+++.+..++|.|+++ +|++..+++ .......++..++.+++|+++|| +|||+.+.++..+..
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag-~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~ 90 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAF-IIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence 3344444455455677788888888765 688888888 88899999999999999999999 899999999998888
Q ss_pred HHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccc---hhhhhHHHHHHHHHHHHH
Q 048207 317 VSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEI---RSAGQSITVAVGLLFTSL 393 (466)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~~~~~~~~~~~ 393 (466)
++.+++.+. ++.+...+...+.+.+.+...+.. ..+.+|.+|++. |+++.++.+...++|..+
T Consensus 91 ~g~~~~~~~-------------~~~~~~~~~~~l~g~g~g~~~~~~-~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i 156 (475)
T TIGR00924 91 LGHFMLAMS-------------IYPDLIFYGLGTIAVGSGLFKANP-SSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI 156 (475)
T ss_pred HHHHHHHhc-------------ccHhHHHHHHHHHHhccccccCCH-HHHHHHhcCCCCcccccceehhHHHHHHHHHHH
Confidence 887766643 112233334444444444433333 555578888654 888999999999999999
Q ss_pred HHHHHHHHHhhcccceehhhHHHHHHHHHhhh
Q 048207 394 VAQTFLAMLCHFKAGVFFFFGGWLTVMTTFVH 425 (466)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (466)
+|.+.+.+.++.++...+...++..+.+.+.+
T Consensus 157 g~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 157 SPLLAGVIAENYGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 99999999988887666555554444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-09 Score=100.54 Aligned_cols=324 Identities=15% Similarity=0.123 Sum_probs=187.3
Q ss_pred HHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCc
Q 048207 41 TSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPK 120 (466)
Q Consensus 41 ~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 120 (466)
.++.+....+++++.+.+.|+.|.|+.+.++...+....+..-+ +|-+.++++-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77888889999999999999999999999999999888877755 56777888999999999999999999999999999
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHhhhhcccCCC-----cchH--------------HHHHhhhHHHHHHHHHhhcccCCh
Q 048207 121 CRGAFNIGFQVCVATGILSANLLNYGTQKIKGG-----WGWK--------------ISLAMAAAPASILTIGSLFLPETP 181 (466)
Q Consensus 121 ~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----~~wr--------------~~f~~~~~~~~~~~~~~~~~~es~ 181 (466)
.+.+..++.-+....+.++|..+-..+...... .+-+ ..+.+...+..+..+...+.|...
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999999888888888887665444332210 1111 111111111111122222222211
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
. ..+.++ .+.......+..++....++.+............ .......
T Consensus 215 -~-------~~~~~~-----------------------~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~-~Sf~~~i 262 (461)
T KOG3098|consen 215 -V-------VNCKSS-----------------------SETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLE-TSFWISI 262 (461)
T ss_pred -h-------hhhhhh-----------------------ccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH-HHHHHhc
Confidence 0 000000 0000111223333322223333322222221111 1111122
Q ss_pred HHHHH--h-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhh---cCCeeeehhhhHHHHHHHHHHHHHHHhhcC--CC
Q 048207 262 APVLF--R-TIKLSENTSLLMSALVTGGIGTVSAILPMILADK---LGRKVLFLLGGIQMLVSQVMIGSIMAAQLG--DH 333 (466)
Q Consensus 262 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 333 (466)
.|..+ . +.+.+............+++.+++....+.+.+| +|+++.+.++..+..+..++.........+ ..
T Consensus 263 ypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t 342 (461)
T KOG3098|consen 263 YPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT 342 (461)
T ss_pred cchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCC
Confidence 22221 2 3444444444356666777888888888888766 677777777766666665555443322221 11
Q ss_pred CCc---cchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 048207 334 GGF---SIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFL 399 (466)
Q Consensus 334 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 399 (466)
+.. ..+......++..+.+.+-+...... +.++...+ ++.|..+.++...-..+.+.++-...+
T Consensus 343 ~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~-~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 343 DSPPLLFTPSYYLALIIGFLLGFGDACFNTQR-YVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred cccccccccchhHHHHHHHHHhhHHHHHHHHH-HHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 111 11223344555555555555444444 66667778 477888888888777776665554443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6e-11 Score=114.96 Aligned_cols=159 Identities=16% Similarity=0.072 Sum_probs=117.8
Q ss_pred HHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHH
Q 048207 243 AILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMI 322 (466)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 322 (466)
...+..+......+....+.|.+.++.|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 92 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMH-MVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFC 92 (471)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 33344444444556677789999999999988877 77788888889999999999999999999888777776666554
Q ss_pred HHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048207 323 GSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAML 402 (466)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 402 (466)
... ++.+..++...+.+.+.+...+ ....+..|.+|++.|+++.|+.+....++..++|.+.+.+.
T Consensus 93 ~~~-------------~~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 93 ALS-------------GTLNELLLARVLQGVGGAMMVP-VGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHh-------------CCHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 432 2233444445555555544333 33556679999999999999999999999999999999999
Q ss_pred hhcccceehhhHHH
Q 048207 403 CHFKAGVFFFFGGW 416 (466)
Q Consensus 403 ~~~~~~~~~~~~~~ 416 (466)
+..++...+.....
T Consensus 159 ~~~gw~~~f~~~~~ 172 (471)
T PRK10504 159 EYASWHWIFLINIP 172 (471)
T ss_pred hhccHHHHHHHHHH
Confidence 98886655544433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.4e-11 Score=114.29 Aligned_cols=158 Identities=14% Similarity=0.064 Sum_probs=116.0
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc--cch-h-HHHHHHHHhh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA--FNI-Y-MLIFGRLLLG 99 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~-~-~l~~~r~l~G 99 (466)
|.+.++.|.+....++......+...++.++.|+++||+|||++++.+..+.+++.++.+.. ++. + ....+-++.+
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 374 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 55667788888877888888888999999999999999999999999999998888776543 121 1 2223444444
Q ss_pred hhhhh-hhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcc---cCCCcchHHHHHhhhHHHHHHHHHh-
Q 048207 100 VGIDF-GNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQK---IKGGWGWKISLAMAAAPASILTIGS- 174 (466)
Q Consensus 100 ~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~---~~~~~~wr~~f~~~~~~~~~~~~~~- 174 (466)
.+.+. ..+....+++|.+|+++|++++++......+|.++++.+...+.+ ..+..+|++.|++.++.+++..+..
T Consensus 375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
T PRK10077 375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 454 (479)
T ss_pred HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence 44443 236678999999999999999999999999999888766554431 1123568888888877766655444
Q ss_pred hcccCCh
Q 048207 175 LFLPETP 181 (466)
Q Consensus 175 ~~~~es~ 181 (466)
++.||++
T Consensus 455 ~~~~e~~ 461 (479)
T PRK10077 455 KFVPETK 461 (479)
T ss_pred hccccCC
Confidence 4567764
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-11 Score=118.48 Aligned_cols=162 Identities=16% Similarity=0.085 Sum_probs=113.5
Q ss_pred HHhhHHHHHhhhCCC--------cchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhh
Q 048207 258 ISFYAPVLFRTIKLS--------ENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQ 329 (466)
Q Consensus 258 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (466)
.....+....+.+.+ ..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--- 122 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWG-LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA--- 122 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHH-HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---
Confidence 333344444555555 56666 888999999999999999999999999999988888777776665432
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH---HHHHhhcc
Q 048207 330 LGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTF---LAMLCHFK 406 (466)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~ 406 (466)
.....+..++...+.+.+.+..... ...+..|.+|+++|+.+.++.+....+|..+++.+. ....+..+
T Consensus 123 -------~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 194 (481)
T TIGR00879 123 -------FALSVEMLIVGRVLLGIGVGIASAL-VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG 194 (481)
T ss_pred -------cccchHHHHHHHHHHHhhhhHHHhH-HHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 1122234555555566655544443 366678999999999999999999999999999887 44445556
Q ss_pred cceehhhHHHHHHHHHhhheecccC
Q 048207 407 AGVFFFFGGWLTVMTTFVHFFLPET 431 (466)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
+...+...++..+...+..++++|+
T Consensus 195 w~~~f~~~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 195 WRIPLGLQLIPAGLLFLGLFFLPES 219 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 6655555555555555555666664
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=105.76 Aligned_cols=175 Identities=15% Similarity=0.074 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHH
Q 048207 240 LVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQ 319 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 319 (466)
.++.+.+..+...+..+...-.+|.+-++++.+...++ ...+.++.+..+++++...+.||+.||+.++....++.++.
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG-~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n 92 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAG-QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN 92 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 44445555565566677788888999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 048207 320 VMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFL 399 (466)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 399 (466)
++..+. ++.+...+.=.+.+...+..+. +...+..++.|+++|+++.+++.....+...++.++..
T Consensus 93 ~l~alA-------------p~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt 158 (394)
T COG2814 93 LLSALA-------------PSFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT 158 (394)
T ss_pred HHHHHh-------------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH
Confidence 888876 3344455555555555554444 44677789999999999999999999999999999999
Q ss_pred HHHhhcccceehhhH-HHHHHHHHhhheecc
Q 048207 400 AMLCHFKAGVFFFFG-GWLTVMTTFVHFFLP 429 (466)
Q Consensus 400 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 429 (466)
++-+.+||+..+... ++..+..+..+..+|
T Consensus 159 ~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 159 FLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999987665554 444444555666777
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=113.13 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=115.8
Q ss_pred chhHHhhHH-HHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC
Q 048207 255 VNIISFYAP-VLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333 (466)
Q Consensus 255 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
........| .+.++.|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+.++..++.++..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------- 82 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIG-LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-------- 82 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHH-HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--------
Confidence 344555666 56678899999888 88899999999999999999999999999888888888884444422
Q ss_pred CCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhh
Q 048207 334 GGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFF 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
++.+..++..++.+.+.+...... ..+..|.+|+++|+.++++.+....++..+++.+.+.+.+..++...+..
T Consensus 83 -----~~~~~~~~~~~l~g~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~ 156 (352)
T PF07690_consen 83 -----SNFWLLLIARFLLGIGSGFFSPAS-NALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI 156 (352)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred -----hhHHHHhhhccccccccccccccc-cccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence 123345555556666554444444 56668999999999999999999999999999999999888887666555
Q ss_pred HHHHHHHHHh
Q 048207 414 GGWLTVMTTF 423 (466)
Q Consensus 414 ~~~~~~~~~~ 423 (466)
.++..+...+
T Consensus 157 ~~~~~~~~~i 166 (352)
T PF07690_consen 157 SAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHH
T ss_pred ccchhhhhhh
Confidence 5555444443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.7e-11 Score=110.76 Aligned_cols=163 Identities=13% Similarity=0.018 Sum_probs=119.5
Q ss_pred chhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCC
Q 048207 255 VNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG 334 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
........|.+.++.|.+..+.+ +..+...++..+++++.|++.||+|||+.+..+..+..++.++....
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--------- 88 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAG-HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--------- 88 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHh-HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh---------
Confidence 44556677888889999988888 88999999999999999999999999999999988888877766554
Q ss_pred CccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhH
Q 048207 335 GFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFG 414 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (466)
++.+...+...+.+.+.+.... ....+..|.+|+++|+.++++......++..+++++.+.+.+..++...+...
T Consensus 89 ----~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 89 ----SSYLMLAIGRLVSGFPHGAFFG-VGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred ----CcHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 2344444444555554444333 32455578899989999999999889999999999998888877776555544
Q ss_pred HHH-HHHHHhhheecccCC
Q 048207 415 GWL-TVMTTFVHFFLPETK 432 (466)
Q Consensus 415 ~~~-~~~~~~~~~~~~~~~ 432 (466)
+.. .+.........||.+
T Consensus 164 ~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 164 AVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 433 333333344556543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=109.38 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=115.3
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHH-HHHHHHHHHHhhhhh-----ccchhHHHHHHHH
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSIL-IGGVAFLAGSALGGS-----AFNIYMLIFGRLL 97 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l 97 (466)
|...+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+....+++.+...+ .++.+.+.+..++
T Consensus 246 p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 325 (402)
T TIGR00897 246 PMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIA 325 (402)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence 3344668899999999999999999999999999999999988764 333334443333322 3467777788999
Q ss_pred hhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc
Q 048207 98 LGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL 177 (466)
Q Consensus 98 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 177 (466)
.|++.+...+ ....+.|..| ++|+++.++.+....+|..++|.+++.+.+. .||+..+++.++..++..+...|+
T Consensus 326 ~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~---~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 326 LGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF---FGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHHHHHHHHHHh
Confidence 9998887655 4456677655 6899999999999999999999999988875 459999999888777766665554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=113.42 Aligned_cols=178 Identities=16% Similarity=0.131 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHH
Q 048207 240 LVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQ 319 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 319 (466)
.+....+..+....-......-.|.+.++++.+..+.. +....+.++...+.++.|+++||+|||+.+..+..+..++.
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~-~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~ 85 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELL-WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLAS 85 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 33444444444444455667778999999999888888 88888999999999999999999999999999998888888
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 048207 320 VMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFL 399 (466)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 399 (466)
++.... ++.+..++.-.+.+.+.+...+.....+..+..|+++|++++|+......++..++|.+.+
T Consensus 86 ~~~~~a-------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg 152 (495)
T PRK14995 86 LAAAFS-------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG 152 (495)
T ss_pred HHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776654 2344445444555555544333332233233447789999999999999999999999999
Q ss_pred HHHhhcccceehhhHHHH-HHHHHhhheecccC
Q 048207 400 AMLCHFKAGVFFFFGGWL-TVMTTFVHFFLPET 431 (466)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 431 (466)
.+.++.+|...+...... .+...+..+.+|+.
T Consensus 153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999988877655544333 33333344455554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=109.18 Aligned_cols=163 Identities=14% Similarity=0.098 Sum_probs=113.7
Q ss_pred chhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCC
Q 048207 255 VNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG 334 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
........|.+.++.+.++.+.+ .......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 24 ~~~~~p~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--------- 93 (394)
T PRK11652 24 QTIYVPAIADMARDLNVREGAVQ-AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA--------- 93 (394)
T ss_pred HHHHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 33444456778889999998888 88889999999999999999999999999988877777766655432
Q ss_pred CccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhH
Q 048207 335 GFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFG 414 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (466)
++.+..++...+.+.+.+.. .+....+..|.++.+.++.+.+..+....++..++|.+.+.+.+..++...+...
T Consensus 94 ----~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 94 ----HSLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred ----ccHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 22333333444444433322 2333455578888889999999998888888899999999888877766555544
Q ss_pred HH-HHHHHHhhheecccCC
Q 048207 415 GW-LTVMTTFVHFFLPETK 432 (466)
Q Consensus 415 ~~-~~~~~~~~~~~~~~~~ 432 (466)
++ ..+...+..++.||++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 169 LLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHHHhCCccC
Confidence 33 3333333444556643
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-11 Score=114.42 Aligned_cols=145 Identities=14% Similarity=-0.070 Sum_probs=107.0
Q ss_pred hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHH
Q 048207 268 TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVL 347 (466)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
+++++..+.+ .....+.++.+++.++.|++.||+|+|+.+..+.++..++.++..... ....+..++.
T Consensus 70 ~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~ 137 (465)
T TIGR00894 70 NFKWSGALQG-LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-----------GGGIALVVFC 137 (465)
T ss_pred CCCCCHHHhh-HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-----------HcCchHHHHH
Confidence 4567777777 888899999999999999999999999999888877777665554321 0112334444
Q ss_pred HHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccceehhhHHHHHHHHHhhh
Q 048207 348 ICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF-KAGVFFFFGGWLTVMTTFVH 425 (466)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 425 (466)
-++.+.+.+...+.. ..+..|.+|++.|++++|+.+....+|..+++++.+.+.+.. ++...+.+.++..++..+.+
T Consensus 138 r~~~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~ 215 (465)
T TIGR00894 138 RVIQGLAQGSVSPAT-HKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLW 215 (465)
T ss_pred HHHHHHhcccchhhH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHH
Confidence 555555555444444 566689999999999999999999999999999999998884 77766665554444443333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-11 Score=115.39 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=123.8
Q ss_pred HHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHH
Q 048207 247 PFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIM 326 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 326 (466)
..+.............|.+.++.|.+..+.+ +......++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~- 87 (485)
T TIGR00711 10 GTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQ-WVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA- 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-
Confidence 3333333445666778888899999988888 88899999999999999999999999999998888887777666533
Q ss_pred HhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048207 327 AAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK 406 (466)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
++.+..+...++.+.+.+.. .+....+..|.+|++.|+.+.++......++..++|.+.+.+.++.+
T Consensus 88 ------------~~~~~l~~~~~~~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 88 ------------PNLELMIIFRVIQGFGGGPL-IPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred ------------CCHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 22344444445555444433 33445666899999999999999999999999999999999998888
Q ss_pred cceehhhHHHHHH-HHHhhheecccC
Q 048207 407 AGVFFFFGGWLTV-MTTFVHFFLPET 431 (466)
Q Consensus 407 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 431 (466)
+...+.......+ ...+..+..|++
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 7665554433333 333333444543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=110.81 Aligned_cols=149 Identities=19% Similarity=0.130 Sum_probs=105.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHh
Q 048207 275 TSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAG 354 (466)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (466)
..+ .......++.+++.++.|++.||+|||+.+..+.++..++.++....... .+....+..++.-++.+.+
T Consensus 57 ~~~-~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~~~r~l~G~~ 128 (502)
T TIGR00887 57 VSA-AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS-------SPKSVMATLCFWRFWLGVG 128 (502)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc-------ccchHHHHHHHHHHHHHHH
Confidence 444 78888899999999999999999999999988888777776665543100 0001123455555566666
Q ss_pred hhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHh-----------------------hcccceeh
Q 048207 355 FGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLC-----------------------HFKAGVFF 411 (466)
Q Consensus 355 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~ 411 (466)
.+...++. ..+..|.+|++.|+++.++.+....+|..+++.+...+.. ..+|...+
T Consensus 129 ~g~~~~~~-~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~ 207 (502)
T TIGR00887 129 IGGDYPLS-AIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILI 207 (502)
T ss_pred HhhhhHHH-HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHH
Confidence 66555544 6777899999999999999999999988888877665432 12455566
Q ss_pred hhHHHHHHHHHhhheecccCC
Q 048207 412 FFGGWLTVMTTFVHFFLPETK 432 (466)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~ 432 (466)
.+.++..++..+..+++||+.
T Consensus 208 ~~~~ip~~i~~~~~~~lpESp 228 (502)
T TIGR00887 208 GFGAVPALLALYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHHHHHHHhCCCCH
Confidence 666555555556667788863
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=110.08 Aligned_cols=141 Identities=13% Similarity=0.027 Sum_probs=111.5
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHH--hhhhh--ccchhHHHHHHHHhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGS--ALGGS--AFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~--~~~~~--~~~~~~l~~~r~l~G~~ 101 (466)
+++++|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+.+..++.|++
T Consensus 246 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 325 (394)
T TIGR00883 246 LTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALI 325 (394)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 346788899999999999999999999999999999999998876554444333 22222 25677777888999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhH-HHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHH
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIG-FQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPAS 168 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~ 168 (466)
.+...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+.+..+ .|+..++...+.++
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~~~~~~~~~~l 391 (394)
T TIGR00883 326 GGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG--DWYAIGYYLAALAL 391 (394)
T ss_pred HHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC--cchhHHHHHHHHHH
Confidence 988999999999999999999999998 456667899999999998877543 27777666555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-10 Score=109.54 Aligned_cols=131 Identities=9% Similarity=-0.010 Sum_probs=93.6
Q ss_pred chhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCC
Q 048207 255 VNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG 334 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
......+.|.+.+++|.+..+.+ ...+...++..++.++.|+++||+|||+.+..+.++..++.++..+.
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--------- 121 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIG-NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--------- 121 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh---------
Confidence 34455666778889999988887 77788888899999999999999999998888777777666555443
Q ss_pred CccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 048207 335 GFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAM 401 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (466)
.+.+...+..++.+.+.+. ..+. ..+++|.+|++.|+.++|+.+....+++.+++.+.+.+
T Consensus 122 ----~s~~~l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 122 ----SSATGFIAVRFFIGFSLAT-FVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred ----cCHHHHHHHHHHHHHHHHh-hHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333333344444332 2232 34557999999999999999988888887776666544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.2e-10 Score=106.54 Aligned_cols=154 Identities=14% Similarity=0.045 Sum_probs=120.3
Q ss_pred ccccccccCCcchhHHHHH-hhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhh---hhc-cchhHHHHHHHHh
Q 048207 24 TKVSDYCKFDSQLLTSLTS-SLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALG---GSA-FNIYMLIFGRLLL 98 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s-~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~l~~~r~l~ 98 (466)
|.+.+++|.|..+.+++.+ ...++..++.+++|+++||+|||+.+.++.++.+++.++. +.. ++.+.+.+.-+++
T Consensus 247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~ 326 (491)
T PRK11010 247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFE 326 (491)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4456678999999999974 6668999999999999999999998877666555544322 233 4555555666776
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhccc
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLP 178 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 178 (466)
.++.|...+...++..+..+++.+++..++.+...++|..+++.+++.+.+. .||+..|.+.++.+++..+...+++
T Consensus 327 ~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~---~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 327 NLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA---HGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777788999999999999999999999999988888888888775 4599999998888888776666665
Q ss_pred CC
Q 048207 179 ET 180 (466)
Q Consensus 179 es 180 (466)
++
T Consensus 404 ~~ 405 (491)
T PRK11010 404 QT 405 (491)
T ss_pred hc
Confidence 43
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-10 Score=96.59 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=121.8
Q ss_pred CCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc-------cchhHHHHH
Q 048207 22 EDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA-------FNIYMLIFG 94 (466)
Q Consensus 22 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-------~~~~~l~~~ 94 (466)
..|++++.+|+|.+|...+.+...+|..+ .++.|.+.|++|++.++.+|.+...+|..+...+ +++|.+.+.
T Consensus 24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~ 102 (250)
T PF06813_consen 24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLF 102 (250)
T ss_pred hhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHH
Confidence 47899999999999999999999999987 5889999999999999999999999999887654 467888888
Q ss_pred HHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh
Q 048207 95 RLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS 174 (466)
Q Consensus 95 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 174 (466)
.++.|.+.+.....+.....+.|| ++||++.++.-...+++..+-..+...+.+. ..-+..+.....+.++.++..
T Consensus 103 ~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~---~~~~fll~la~~~~~v~l~~~ 178 (250)
T PF06813_consen 103 LFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD---DPSSFLLFLAVLPAVVCLVAM 178 (250)
T ss_pred HHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHh
Confidence 899988887777777777778887 5799999999999999866655554333332 224455555555666666666
Q ss_pred hcccCCh
Q 048207 175 LFLPETP 181 (466)
Q Consensus 175 ~~~~es~ 181 (466)
+++++.|
T Consensus 179 ~~vr~~~ 185 (250)
T PF06813_consen 179 FFVRPVP 185 (250)
T ss_pred hheeccC
Confidence 6665444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-10 Score=108.05 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=132.9
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcch--HHHHHHHHHHHHHHhhhhh--------ccchhHHHHHHH
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGK--VSILIGGVAFLAGSALGGS--------AFNIYMLIFGRL 96 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~i~~~~~~~--------~~~~~~l~~~r~ 96 (466)
++++|++..+...+.-+..+...+|++++|++.||+|.| +++..++.++.+..+...+ .++-+.+.+.-+
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 568999999999999999999999999999999999999 8998888888666666555 678889999999
Q ss_pred HhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc
Q 048207 97 LLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF 176 (466)
Q Consensus 97 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 176 (466)
+.|+..|..++...++.+|..|+++.+..+|++....-....+||++-+.+.+..+ +-|+.+....++.++.+++.++
T Consensus 389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998888764 3677777777777777766666
Q ss_pred ccC
Q 048207 177 LPE 179 (466)
Q Consensus 177 ~~e 179 (466)
+++
T Consensus 467 v~~ 469 (477)
T PF11700_consen 467 VDV 469 (477)
T ss_pred ccc
Confidence 654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=108.99 Aligned_cols=163 Identities=17% Similarity=0.081 Sum_probs=113.8
Q ss_pred chhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCC
Q 048207 255 VNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG 334 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
...+....|.+.++++.+..+.+ .......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------- 98 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVP-TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA--------- 98 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 34444556777788999988887 77888999999999999999999999999988887777776665443
Q ss_pred CccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhH
Q 048207 335 GFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFG 414 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (466)
++.+..+....+.+.+.+... +.......|.+|++.|..+.++......++..++|.+.+.+.+..++...+.+.
T Consensus 99 ----~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 99 ----QSIEQFTLLRFLQGIGLCFIG-AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred ----ccHHHHHHHHHHHHhHhhhHH-HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 223333333344444433322 333555679999999999999988888888899999999888877766555544
Q ss_pred HHHHHHH-HhhheecccCC
Q 048207 415 GWLTVMT-TFVHFFLPETK 432 (466)
Q Consensus 415 ~~~~~~~-~~~~~~~~~~~ 432 (466)
+++.++. ...+...||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 174 AALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 4333333 33334455543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-10 Score=108.72 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=114.3
Q ss_pred HHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCcc
Q 048207 258 ISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFS 337 (466)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
...-.|.+.++++.+..... ...+.+.++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 35 ~~p~l~~i~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------------ 101 (413)
T PRK15403 35 IQPGIINVVRDFNADVSLAP-ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------------ 101 (413)
T ss_pred hccCHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc------------
Confidence 33344566678898888887 88888899999999999999999999999998887777776665543
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHH
Q 048207 338 IGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417 (466)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (466)
++.+..++.-++.+.+.+. ..+....+..|.+|++.+++++++.+....++..++|.+.+.+.+..+|...+...++.
T Consensus 102 -~~~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~ 179 (413)
T PRK15403 102 -TSMTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVM 179 (413)
T ss_pred -CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2233444444444444332 23334566678999999999999999999999999998888888877776655554444
Q ss_pred HHHHHh-hheecccCC
Q 048207 418 TVMTTF-VHFFLPETK 432 (466)
Q Consensus 418 ~~~~~~-~~~~~~~~~ 432 (466)
.+++.+ ..+.+||++
T Consensus 180 ~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 180 GLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 444333 344566654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-10 Score=107.59 Aligned_cols=155 Identities=16% Similarity=0.042 Sum_probs=108.2
Q ss_pred hHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 261 YAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
..|.+.++.+.+..+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.+..... ++
T Consensus 28 ~~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------------~~ 93 (401)
T PRK11043 28 AFKAIQADLQTSASAVS-ASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-------------ES 93 (401)
T ss_pred hHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-------------cC
Confidence 33455678899988888 88889999999999999999999999999988877777666655443 12
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHH
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVM 420 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (466)
.+...+...+.+.+.+.... ....+..|.+|++.++...+..+....++..++|.+.+.+.+..++...+.......+.
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~ 172 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSAAV-IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL 172 (401)
T ss_pred HHHHHHHHHHHHhhhHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 23333333444333332222 22345578899988888899888888999999999999999888876555444444444
Q ss_pred HHhhheeccc
Q 048207 421 TTFVHFFLPE 430 (466)
Q Consensus 421 ~~~~~~~~~~ 430 (466)
..+..+..++
T Consensus 173 ~~~~~~~~~~ 182 (401)
T PRK11043 173 LILPTLRLKP 182 (401)
T ss_pred HHHHHHHcCC
Confidence 4333333443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=106.60 Aligned_cols=141 Identities=18% Similarity=0.121 Sum_probs=103.3
Q ss_pred HHHhcccchhHHhhHHH-HHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHH
Q 048207 248 FFQQVTGVNIISFYAPV-LFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIM 326 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 326 (466)
.+..+........+.|. +.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+.++..++.+++....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~ 88 (366)
T TIGR00886 10 FFLSFSVWFAFSPLAVQMIKDDLGLSTAQLG-NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV 88 (366)
T ss_pred HHHHHHHHHHhHHhhhHHHHHHhCCCHHHhh-HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh
Confidence 33334445666777785 5678999998888 888999999999999999999999999999998888888877665541
Q ss_pred HhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 048207 327 AAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLC 403 (466)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
.+.+...+..++.+.+.+ ...+ ...+..|.+|+++|+.+.++......+|..+++.+.+.+..
T Consensus 89 ------------~~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 89 ------------QSYSVLLLLRLFIGIAGG-SFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred ------------hhHHHHHHHHHHHHHhch-hhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 023334444444444422 3333 34566899999999999999988888877777777666554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=107.79 Aligned_cols=160 Identities=13% Similarity=0.058 Sum_probs=112.7
Q ss_pred chhHHhhHHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC
Q 048207 255 VNIISFYAPVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333 (466)
Q Consensus 255 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
.+....+.+.++ ++.|.+....+ +......+...+..++.|+++||+|||+.+..+.....++.+.+...
T Consensus 26 ~~~~~~~~~~~~~~~~g~s~~~~g-l~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-------- 96 (400)
T PRK11646 26 FFVVFPLISIRFVDQLGWAAVMVG-IALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-------- 96 (400)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHH-HHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--------
Confidence 344455555554 67899988888 88888888888889999999999999999999888888877776543
Q ss_pred CCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhh
Q 048207 334 GGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFF 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
++.+.......+.+.+.+...++. ..+..|.+|++.|++++|+.+....++..++|.+.+.+. ..++...+..
T Consensus 97 -----~~~~~l~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~ 169 (400)
T PRK11646 97 -----HEPWLLWLSCILSGLGGTLFDPPR-TALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT 169 (400)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 223344444444444443333333 455579999999999999999999999999999999988 5666554444
Q ss_pred HHHH-HHHHHhhheeccc
Q 048207 414 GGWL-TVMTTFVHFFLPE 430 (466)
Q Consensus 414 ~~~~-~~~~~~~~~~~~~ 430 (466)
.++. .+..++..+..|+
T Consensus 170 ~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 170 GAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 3333 3333333334444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.7e-11 Score=110.08 Aligned_cols=160 Identities=18% Similarity=0.102 Sum_probs=116.9
Q ss_pred hHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCc
Q 048207 257 IISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGF 336 (466)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
......|.+.++.|.+..+.+ ...+...++..++.++.|++.||+|||+.+..+..+..++...+...
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~----------- 76 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQ-MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA----------- 76 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 344566777888999988888 88889999999999999999999999999998888888777776543
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhH-H
Q 048207 337 SIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFG-G 415 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 415 (466)
++.+.......+.+.+.+...... ..+..|.+|+++|++++++.+....++..++|.+.+.+.+..++...+... .
T Consensus 77 --~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 153 (377)
T PRK11102 77 --QTIDQLIYMRFLHGLAAAAASVVI-NALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLAL 153 (377)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 223334444444454444333333 556689999999999999999999999999999999998887765554443 3
Q ss_pred HHHHHHHhhheecccC
Q 048207 416 WLTVMTTFVHFFLPET 431 (466)
Q Consensus 416 ~~~~~~~~~~~~~~~~ 431 (466)
++.+......+..+|+
T Consensus 154 ~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 154 AAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 3333334444455554
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=107.33 Aligned_cols=152 Identities=16% Similarity=0.019 Sum_probs=118.6
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc-chhHHHHHHHHhhhhhhhh
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF-NIYMLIFGRLLLGVGIDFG 105 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~ 105 (466)
-+++|.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+ .-++.|++.+..
T Consensus 232 l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~ 309 (393)
T PRK09705 232 YIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGA 309 (393)
T ss_pred HHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccch
Confidence 345799999999999999999999999999999999999999988888777776554333 32222 234668888888
Q ss_pred hhhhhHHHHhcCC-CcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH-hhcccCChh
Q 048207 106 NQSVPLYLSEMAP-PKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG-SLFLPETPN 182 (466)
Q Consensus 106 ~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~es~~ 182 (466)
.+.......+..+ +++|++..++.+....++..++|.+.+++.+..+ +|+..|.+.++.+++.... ..+.||++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 310 FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 8877777777775 5779999999999999999999999999888654 3778888877666665443 455677653
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=106.53 Aligned_cols=161 Identities=11% Similarity=-0.075 Sum_probs=112.5
Q ss_pred hhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 048207 256 NIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG 335 (466)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
..+....|.+.++++.+..+.+ +..+.+.++..++++..|+++||+|||+.+.........+.. ....
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~---------- 75 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELG-LLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD---------- 75 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH----------
Confidence 4455667888889999998888 888888999999999999999999988865544333333221 1111
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhh-H
Q 048207 336 FSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFF-G 414 (466)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 414 (466)
. ++....++.-++.+.+.+. ..+. ....+|.+|+++|++++++.+....+|..+++.+.+.+.++.+|...+.. +
T Consensus 76 -~-~~~~~l~~~R~l~G~g~~~-~~~~-~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~ 151 (368)
T TIGR00903 76 -P-FNYEWLLACQLLAALGQPF-LLNA-FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIA 151 (368)
T ss_pred -h-ccHHHHHHHHHHHHhHhHH-HHHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 0 1233444445555555443 2222 33347999999999999999999999999999999999888888866655 4
Q ss_pred HHHHHHHHhhheecccCC
Q 048207 415 GWLTVMTTFVHFFLPETK 432 (466)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~ 432 (466)
++..+...+.++.+||.+
T Consensus 152 ~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 152 AVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 444444555556667654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.6e-10 Score=105.16 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=108.6
Q ss_pred HHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCcc
Q 048207 258 ISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFS 337 (466)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
.....+.+.++.+.+....+ +....+.+...+..++.|++.||+|||+++..+..+..++.+.+....
T Consensus 22 ~~~~~~~~~~~~~~s~~~~~-~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~----------- 89 (393)
T PRK11195 22 LLFAAIALLKELHYPDWSQP-LLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI----------- 89 (393)
T ss_pred HHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH-----------
Confidence 33444555677787777766 888899999999999999999999999999999888877666544321
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHH
Q 048207 338 IGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWL 417 (466)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (466)
+ . ++..++.+.+.+. ..|....+..|.+|+++|++++|+.+....++..++|.+.|.+.+.. +...+...+.+
T Consensus 90 -~-~---~~~r~l~G~~~a~-~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~ 162 (393)
T PRK11195 90 -H-P---LLAYGLVGIGAAA-YSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALI 162 (393)
T ss_pred -H-H---HHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 1 1 2223344444443 33444666789999999999999999999999999999999988854 33233333333
Q ss_pred HHHHHhhheecccC
Q 048207 418 TVMTTFVHFFLPET 431 (466)
Q Consensus 418 ~~~~~~~~~~~~~~ 431 (466)
.+.+.+....+||.
T Consensus 163 ~~~~~~~~~~l~~~ 176 (393)
T PRK11195 163 YLLAALFNLFIPRL 176 (393)
T ss_pred HHHHHHHHhcCCCC
Confidence 33334444556654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.2e-10 Score=104.65 Aligned_cols=140 Identities=13% Similarity=0.044 Sum_probs=118.4
Q ss_pred ccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhh
Q 048207 28 DYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQ 107 (466)
Q Consensus 28 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 107 (466)
+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+..+.+++.++.+++++.+.+++..++.|++.+...+
T Consensus 233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 312 (382)
T PRK11128 233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL 312 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999888888899999999999999999999889
Q ss_pred hhhHHHHhcCCCcccCchhhHHH-HHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHH
Q 048207 108 SVPLYLSEMAPPKCRGAFNIGFQ-VCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTI 172 (466)
Q Consensus 108 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 172 (466)
....++.+. +++++++..+... ...++|..+||.+++.+.+..+ + ..++..+..+++.++
T Consensus 313 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g---~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 313 AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG---A-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---H-HHHHHHHHHHHHHHH
Confidence 888888886 5666788888876 5567888999999999988643 5 355555555554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.1e-10 Score=107.80 Aligned_cols=168 Identities=14% Similarity=0.110 Sum_probs=118.1
Q ss_pred HHHHHHHhcccchhHHhhHHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCeeeehhhhHHHHHHHHH
Q 048207 244 ILIPFFQQVTGVNIISFYAPVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADK-LGRKVLFLLGGIQMLVSQVM 321 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~ 321 (466)
.....+..-..++.+..+++.|+ +++|.+..++. +....+.....+..+++|+++|| +|||+.+..+.++..++.+.
T Consensus 19 ~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~-~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~ 97 (489)
T PRK10207 19 IFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAF-ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFM 97 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 33333444455677777777776 45888888777 67677777777778899999999 99999999999999988877
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcccccccccccccccccc--chhhhhHHHHHHHHHHHHHHHHHHH
Q 048207 322 IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLE--IRSAGQSITVAVGLLFTSLVAQTFL 399 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~ 399 (466)
+.+.. .......+...+.+.+.+...+.. ..+..|.+|++ .|+.+.++.+...++|..++|.+.+
T Consensus 98 ~~~~~------------~~~~ll~~~~~l~~ig~g~~~~~~-~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g 164 (489)
T PRK10207 98 TGMSL------------LKPDLIFIALGTIAVGNGLFKANP-ASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP 164 (489)
T ss_pred HHHhc------------cchhHHHHHHHHHHhccccccCCH-HHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 76542 112222233444444544444444 56668999887 4577899999999999999999999
Q ss_pred HHHhhcccceehhhHHHHHHHHHhhh
Q 048207 400 AMLCHFKAGVFFFFGGWLTVMTTFVH 425 (466)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (466)
.+.++.||...+....+..+.+++.+
T Consensus 165 ~l~~~~gw~~~F~i~~i~~~~~~~~~ 190 (489)
T PRK10207 165 VIADKFGYSVTYNLCGAGLIIALLVY 190 (489)
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHH
Confidence 99999887666555544444444433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-10 Score=107.96 Aligned_cols=147 Identities=17% Similarity=0.156 Sum_probs=131.2
Q ss_pred Cccc-cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhh
Q 048207 23 DTKV-SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 23 ~~~i-~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 101 (466)
.|.+ ++++|.++...|++.+++.+|..+|+++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.|++
T Consensus 241 lPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~ 320 (524)
T PF05977_consen 241 LPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAA 320 (524)
T ss_pred hhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3444 457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHH
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTI 172 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 172 (466)
.....+...+.+.+..|++.|||+++++......+..+|..+.|.+.+.. |-+..+.+.++..++..+
T Consensus 321 ~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~---g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 321 WIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF---GVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHH
Confidence 99999899999999999999999999999999999999999999988864 477888777765444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-10 Score=100.66 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=135.8
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhh
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGN 106 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 106 (466)
++++|++..+..++.-...+..++|++++|+|.||+|.|+++..++++..+.++..-+...-..+.++-.+.|...|+.+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 45899999999999999999999999999999999999999999999999999988888888888888899999999999
Q ss_pred hhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCC
Q 048207 107 QSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPET 180 (466)
Q Consensus 107 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es 180 (466)
..+.++..+..|+++-++.+|+++...-.+..+||.+-+.+.+..+ +-|.-+....++..+.++..+.+|+.
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999999999999999999999998888765 36776666666666666666666654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=100.46 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=110.8
Q ss_pred chhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCC
Q 048207 255 VNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG 334 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
...+.+++--.+++.+..+..-+ ......-.+.++.-++.+++++|+|+-+++..++.+..+-++.+...
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfG-v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--------- 456 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFG-VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--------- 456 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeee-ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh---------
Confidence 33444444445677775555555 66667777888888999999999999999999988888877777655
Q ss_pred CccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHH-HHHHHHHHHHHHHHHHHhhcccceehhh
Q 048207 335 GFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVA-VGLLFTSLVAQTFLAMLCHFKAGVFFFF 413 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
.++|..+..-++-+...+..|..+ ..|++...||+.|+++.++... ...+|-.+|+.+.|.+.+.++..+.+-.
T Consensus 457 ----~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~ 531 (618)
T KOG3762|consen 457 ----QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI 531 (618)
T ss_pred ----cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence 567777777788888888888777 6777899999999999998875 4566777888888888888885544443
Q ss_pred HH
Q 048207 414 GG 415 (466)
Q Consensus 414 ~~ 415 (466)
.+
T Consensus 532 ~g 533 (618)
T KOG3762|consen 532 FG 533 (618)
T ss_pred HH
Confidence 33
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-10 Score=105.47 Aligned_cols=183 Identities=13% Similarity=0.005 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHH
Q 048207 240 LVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQ 319 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 319 (466)
......+....+..--+.+....+..-+.++.++...+ ++.....+...+++++.|++.||++|++++.++..+..++.
T Consensus 34 ~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~G-ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 34 TLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELG-LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhcc-chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence 33334444444444444555555555566788888888 89999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 048207 320 VMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFL 399 (466)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 399 (466)
+..++. ...|.+.++-.+.+.+-+. +.++...+++|.+|.+.|++++++.+....+|+.++-....
T Consensus 113 ~~~~fs-------------~~Fwq~~l~R~~vGiGeAs-~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs 178 (493)
T KOG1330|consen 113 FASGFS-------------NHFWQVLLCRGFVGIGEAS-YSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS 178 (493)
T ss_pred HHHHHH-------------HHHHHHHHHHHHhccchhh-hcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence 887765 3456666666677777654 45555677799999999999999999999998888877777
Q ss_pred HHHhhcc-cceehhh-HHHHHHHHHhhheecccCCCCCHH
Q 048207 400 AMLCHFK-AGVFFFF-GGWLTVMTTFVHFFLPETKNVPIE 437 (466)
Q Consensus 400 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 437 (466)
.+.+..+ |...+.. +++..+++++..++.+|..++..+
T Consensus 179 ~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 179 VVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred eeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccc
Confidence 7766666 5555444 444455555556666666554333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.8e-10 Score=103.46 Aligned_cols=151 Identities=10% Similarity=0.067 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhcccchhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHH
Q 048207 239 QLVMAILIPFFQQVTGVNIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLV 317 (466)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 317 (466)
+.+....+.+...+..........+.+.+ +++++..+.+ ++.++..+...++++..|++.||+|.|+.+.++.++..+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g-~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLF-LLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 34444444444444444444444455544 6899998888 888888999999999999999999999999988888877
Q ss_pred HHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Q 048207 318 SQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQT 397 (466)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 397 (466)
..+...+.... ..++.+..++...+.+.+ +..+.+. ...+++.+|+++||++.|+....+++|..+.+.+
T Consensus 113 ~~~~~~~a~~~--------~~~s~~~lli~r~l~Gig-g~~f~~~-~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 113 PCVWLGIAVQN--------PNTPFGIFIVIALLCGFA-GANFASS-MGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHHHcc--------cCCCHHHHHHHHHHHHHH-HHhHHHH-HHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence 77666543100 012233444444444444 3344443 5556899999999999999977777777666555
Q ss_pred HHH
Q 048207 398 FLA 400 (466)
Q Consensus 398 ~~~ 400 (466)
.+.
T Consensus 183 ~p~ 185 (462)
T PRK15034 183 APL 185 (462)
T ss_pred HHH
Confidence 544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.11 E-value=8e-10 Score=104.42 Aligned_cols=137 Identities=16% Similarity=0.082 Sum_probs=106.5
Q ss_pred chhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCC
Q 048207 255 VNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG 334 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
........|.+.++++.+..+.+ +..+...++..++++..+++.||+|||+.+..+..+..++..++....
T Consensus 19 ~~~~~~l~~~~~~~~~~s~~~~g-~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~-------- 89 (410)
T TIGR00885 19 NDITNPMVPQFQQAFTLTAFQAA-LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA-------- 89 (410)
T ss_pred HHhHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--------
Confidence 34455677888888999998888 899999999999999999999999999999999998888877654332
Q ss_pred CccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 048207 335 GFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLC 403 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
..++.+..+...++.+.+.+....+. ..+..+..|++.|++..++.+.+..+|..+++.+.+.+..
T Consensus 90 --~~~~~~~~l~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 90 --EIMNYTLFLVGLFILTAGLGFLETAA-NPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred --hhccHHHHHHHHHHHHhhHHHHHhhh-hHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11233445555566666666555544 3444678898999999999999999999999999887753
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-09 Score=102.92 Aligned_cols=151 Identities=13% Similarity=0.001 Sum_probs=98.5
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhh--h--ccchhHHHHHHHHhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGG--S--AFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~--~~~~~~l~~~r~l~G~~ 101 (466)
+++++|.+..+.+...++..++..+++++.|+++||+|||+.+.++..+.++...... . .++....+..-.+.+.+
T Consensus 270 l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (432)
T PRK10406 270 LVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLI 349 (432)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4566888999999999998888899999999999999999988776655433332111 1 22333222222223333
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHH-HHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccC
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVAT-GILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 179 (466)
.+...+....+++|++|++.|+++.++.+....+ .....|.+.+.+... + .|...++..++..++..+..+++++
T Consensus 350 ~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~-g--~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 350 VSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI-G--METAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh-C--CCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444455677899999999999999998765443 233467766655432 1 2556666666666665555555443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=101.55 Aligned_cols=140 Identities=12% Similarity=0.112 Sum_probs=118.8
Q ss_pred cCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhh
Q 048207 31 KFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVP 110 (466)
Q Consensus 31 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 110 (466)
+.+..+.|.+.+...+...++.+..|++.||+|||+.+.++..+.+++..+..+++|.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788999999999999999999999999999999999999999888878889999999999999999877766777
Q ss_pred HHHHhcCCCcccCchhhH-HHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH
Q 048207 111 LYLSEMAPPKCRGAFNIG-FQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG 173 (466)
Q Consensus 111 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 173 (466)
.+..+..+++.++...+. .+....+|..+++.+++.+.+.. ||+..|.+.++..++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~---G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI---GFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc---ccHHHHHHHHHHHHHHHHH
Confidence 788888888878777766 67889999999999999998854 5999999988776665443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-09 Score=101.58 Aligned_cols=118 Identities=18% Similarity=0.180 Sum_probs=101.7
Q ss_pred CcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc-cchhHHHHHHHHhhhhhhhhhhhhhH
Q 048207 33 DSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA-FNIYMLIFGRLLLGVGIDFGNQSVPL 111 (466)
Q Consensus 33 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~ 111 (466)
+..+.+++.+...++..++.+++++++||+|||+++.++..+..++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999999999998888888777665 46677788889999999999999999
Q ss_pred HHHhcCC-------CcccCchhhHHHHHHHHHHHHHHHHhhhhccc
Q 048207 112 YLSEMAP-------PKCRGAFNIGFQVCVATGILSANLLNYGTQKI 150 (466)
Q Consensus 112 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 150 (466)
+++|..+ ++++|...++.+....+|..+++.+.+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45578999999999999999999998887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=106.47 Aligned_cols=135 Identities=21% Similarity=0.094 Sum_probs=110.9
Q ss_pred HhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccch--hHHHHHHHHhhhhhhhhhhhhhHHHHhcCCC
Q 048207 42 SSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNI--YMLIFGRLLLGVGIDFGNQSVPLYLSEMAPP 119 (466)
Q Consensus 42 s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 119 (466)
....+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+....+..|.+|+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 34456667788999999999999999999999999998888777654 5555666777777788888889999999999
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCCh
Q 048207 120 KCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETP 181 (466)
Q Consensus 120 ~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~ 181 (466)
+.|++++++.+....+|.+++|.+.+ +.+ .++..++++.+...++..+..+++||+.
T Consensus 442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 442 VVRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999887 433 3466778887777777777777888875
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=99.22 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=124.6
Q ss_pred hhHHhhHHHHHhhhCCCcch-hhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCC
Q 048207 256 NIISFYAPVLFRTIKLSENT-SLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHG 334 (466)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (466)
....+..|.+.+++|++..+ .+ .+...+..+..+..+++|+++||+|.|+.+..+.+...+..++.++.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G-~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--------- 112 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTN-EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--------- 112 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---------
Confidence 34555677777899999998 66 89999999999999999999999999999999988888888887765
Q ss_pred CccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccee---h
Q 048207 335 GFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVF---F 411 (466)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 411 (466)
.......+.-++++.+-+..+ .. +.++...+|+++|+++.|+.+....+|.++++++.+. ....++..+ .
T Consensus 113 ----~Sl~~L~i~R~llGvaEA~~~-A~-~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln 185 (511)
T TIGR00806 113 ----TSVWHMQLMEVFYSVTMAARI-AY-SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLN 185 (511)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHH
Confidence 234556666677777777666 44 5666899999999999999999999999999999998 555665433 2
Q ss_pred hhHHHHHHHHHhhheecccC
Q 048207 412 FFGGWLTVMTTFVHFFLPET 431 (466)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~ 431 (466)
.+......++++..+++|..
T Consensus 186 ~Isl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 186 IISLVFMTFSVFLALFLKRP 205 (511)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 33444455555666777743
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-09 Score=104.42 Aligned_cols=160 Identities=13% Similarity=0.033 Sum_probs=107.9
Q ss_pred HHHHHHHHhcccchhHHhhHHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCeeeehhhhHHHHHHHH
Q 048207 243 AILIPFFQQVTGVNIISFYAPVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADK-LGRKVLFLLGGIQMLVSQV 320 (466)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~ 320 (466)
......+.....++.+..+.+.|+ +++|.+..++. ..............+++|++.|| +|||+.+..+..+..++..
T Consensus 25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~-~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~ 103 (500)
T PRK09584 25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSI-TLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYA 103 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 333444444455677777888887 67888887776 55555554445555789999999 5999999999888887766
Q ss_pred HHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccc--hhhhhHHHHHHHHHHHHHHHHHH
Q 048207 321 MIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEI--RSAGQSITVAVGLLFTSLVAQTF 398 (466)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~ 398 (466)
++.+.. +..+...+...+.+.+.+...+ ....+..|.+|++. |..+.++.+...++|+.++|.+.
T Consensus 104 l~~~~~------------~~~~~l~~~~~l~gig~g~~~~-~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~ 170 (500)
T PRK09584 104 LVAWSG------------HDAGIVYMGMATIAVGNGLFKA-NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT 170 (500)
T ss_pred HHHHhc------------ccHHHHHHHHHHHHHhhhcccC-CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 665431 1122233333444444444333 33455689887643 45678888999999999999999
Q ss_pred HHHHhhcccceehhhHHH
Q 048207 399 LAMLCHFKAGVFFFFGGW 416 (466)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~ 416 (466)
+.+.++.++...+...++
T Consensus 171 g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 171 PWLAAKYGWSVAFALSVV 188 (500)
T ss_pred HHHHHhhCHHHHHHHHHH
Confidence 999998887765555443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.8e-08 Score=96.33 Aligned_cols=149 Identities=16% Similarity=0.152 Sum_probs=121.0
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh-hcchHHHHHHHHHHHHHHhhhhhccc--------hhHHHHHHHH
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRA-LGGKVSILIGGVAFLAGSALGGSAFN--------IYMLIFGRLL 97 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~--------~~~l~~~r~l 97 (466)
.+.+|++.+....+...+....-+..+++|+++|+ +||++.+.++.++..++.++.+++.. ....+++-.+
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaL 94 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLAL 94 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHH
Confidence 44578889999999999999999999999999995 79999999999999999988877521 2336677888
Q ss_pred hhhhhhhhhhhhhHHHHhcCCCcc---cCchhhHHHHHHHHHHHHHHHHhhhhcccC----CCcchHHHHHhhhHHHHHH
Q 048207 98 LGVGIDFGNQSVPLYLSEMAPPKC---RGAFNIGFQVCVATGILSANLLNYGTQKIK----GGWGWKISLAMAAAPASIL 170 (466)
Q Consensus 98 ~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~wr~~f~~~~~~~~~~ 170 (466)
..+|.|+.-+...+...|.+++++ |...+.++..+.++|.++++.+...+.+.. ...+|...|.+.++..++.
T Consensus 95 ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia 174 (654)
T TIGR00926 95 IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILA 174 (654)
T ss_pred HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHH
Confidence 889999999999999999997543 566788888999999999988887776432 1246999999988877776
Q ss_pred HHHhh
Q 048207 171 TIGSL 175 (466)
Q Consensus 171 ~~~~~ 175 (466)
++...
T Consensus 175 ~lvf~ 179 (654)
T TIGR00926 175 LIVFM 179 (654)
T ss_pred HHHHH
Confidence 55543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=99.66 Aligned_cols=144 Identities=12% Similarity=-0.076 Sum_probs=110.7
Q ss_pred cccccCCcchhHHHHHhhh-HHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhh------ccchhHHHHHHHHhh
Q 048207 27 SDYCKFDSQLLTSLTSSLY-ITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS------AFNIYMLIFGRLLLG 99 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~-l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~------~~~~~~l~~~r~l~G 99 (466)
-+|.|+++++.|++.+... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.....+.+
T Consensus 235 l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (390)
T TIGR02718 235 LVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGS 314 (390)
T ss_pred HHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHH
Confidence 3457999999999988876 466778999999999999999998877665333332221 233444455566667
Q ss_pred hhhhhhhhhhhHHHHhcCCC-cccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH
Q 048207 100 VGIDFGNQSVPLYLSEMAPP-KCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG 173 (466)
Q Consensus 100 ~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 173 (466)
++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+.+.. ||+..|++.+++.++..+.
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~---G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 315 LITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF---GYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHH
Confidence 77787878888887777776 78999999999999999999999999988754 5889998887766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-09 Score=102.20 Aligned_cols=170 Identities=16% Similarity=0.061 Sum_probs=114.7
Q ss_pred HHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhc-----CCee-eehhhhHHHHHHHHH
Q 048207 248 FFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKL-----GRKV-LFLLGGIQMLVSQVM 321 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~~ 321 (466)
++.+...+.....-.|.++++.|++.++.+ .+...... .+..++.|+++||+ |||| .+..+..+.+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig-~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQTIG-FFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 444555567777888999999999999988 55444443 58889999999999 7776 566666666666665
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 048207 322 IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAM 401 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (466)
+.+.. +....+......++.+.. .....+....+..|..|+++|+.+.++......++..+++.+.+.+
T Consensus 85 l~~~~----------~~~~~~~l~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l 153 (402)
T PRK11902 85 MAFCP----------PHAALWPLAGLAVLVAFL-SASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL 153 (402)
T ss_pred HHhcC----------ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 54431 112233333333333333 3334444466778999999999999999988899999999998888
Q ss_pred Hhhc-ccceehhhHHHHHHHHHhhheecccC
Q 048207 402 LCHF-KAGVFFFFGGWLTVMTTFVHFFLPET 431 (466)
Q Consensus 402 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
.+.. +|...+.+.++..+...+..+..+|+
T Consensus 154 ~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~ 184 (402)
T PRK11902 154 ADRVLGWGNTYLLMAGLMLAGALTTLWAPEP 184 (402)
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8754 66666555444444444444455554
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.6e-09 Score=99.43 Aligned_cols=127 Identities=12% Similarity=-0.034 Sum_probs=94.0
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhh-h---hhccchhHHHHHHHHhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSAL-G---GSAFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~-~---~~~~~~~~l~~~r~l~G~~ 101 (466)
+++.+|++..+.++....+.++..++.++.|+++||+|||+++..+..+..+.... . ...+++..+.+..++.|++
T Consensus 265 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (434)
T PRK15075 265 GKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFL 344 (434)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 34557889999999999999999999999999999999999987765544332211 1 1223444455556667777
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHH-HHHHHHHHHHHHhhhhcccCC
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQV-CVATGILSANLLNYGTQKIKG 152 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~ 152 (466)
.+...+....++.|.+|+++|++..++... +..++..++|.+.+.+.+..+
T Consensus 345 ~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 345 YGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 777777777889999999999999998644 444456778888888877654
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.8e-10 Score=97.34 Aligned_cols=143 Identities=20% Similarity=0.056 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhh
Q 048207 276 SLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGF 355 (466)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (466)
.++++.+.+++.+++.++..|.++||+|||.++.++.+..++...+.+... ....++..=+.++.+
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--------------~F~afv~aR~l~Gi~ 134 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--------------NFAAFVLARFLGGIF 134 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhc
Confidence 334888999999999999999999999999999999888888766665432 222233322333333
Q ss_pred hccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHh---hcccceehh---hHHHHHHH-HHhhheec
Q 048207 356 GFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLC---HFKAGVFFF---FGGWLTVM-TTFVHFFL 428 (466)
Q Consensus 356 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~-~~~~~~~~ 428 (466)
.... .+..++++|++++++|+.+++.++....+|-.+||.+.|++.. ..+..++.. +..+.... ..+..+++
T Consensus 135 kgnl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~l 213 (451)
T KOG2615|consen 135 KGNL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFL 213 (451)
T ss_pred cCch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333 3447788999999999999999999999999999999998877 344333322 12222222 33455677
Q ss_pred ccCCC
Q 048207 429 PETKN 433 (466)
Q Consensus 429 ~~~~~ 433 (466)
|||-.
T Consensus 214 pETL~ 218 (451)
T KOG2615|consen 214 PETLP 218 (451)
T ss_pred Ccccc
Confidence 88743
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=96.26 Aligned_cols=170 Identities=14% Similarity=0.084 Sum_probs=118.6
Q ss_pred HHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHH
Q 048207 246 IPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSI 325 (466)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 325 (466)
+.+...++....+....+.+-+++++++.+.. ++..+..+.+.+.+++.|.+.||+|.|+....+.++..+-.+...+.
T Consensus 21 ~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~-ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a 99 (417)
T COG2223 21 LAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKG-LLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFA 99 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCHHHHH-HHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444445555588999999999 99999999999999999999999999999999888888887777766
Q ss_pred HHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048207 326 MAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF 405 (466)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
. ..++.+..+.+..+.+.+-+ ........+++.+|++.+|.++|+.. .+++|..+...+.+.+....
T Consensus 100 ~----------~~~~~~~ll~~gll~G~~Ga--sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~ 166 (417)
T COG2223 100 V----------TYPSTWQLLVIGLLLGLAGA--SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF 166 (417)
T ss_pred c----------cCCchHHHHHHHHHHhcccc--eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence 4 22222344444444433322 22333566689999999999999999 99999999998888888877
Q ss_pred c---cceeh-hhHHHHHHHHHhhheecc
Q 048207 406 K---AGVFF-FFGGWLTVMTTFVHFFLP 429 (466)
Q Consensus 406 ~---~~~~~-~~~~~~~~~~~~~~~~~~ 429 (466)
+ +.... ++.....+..+..++...
T Consensus 167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 167 GFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7 44333 333333333444444443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=102.53 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcc
Q 048207 279 MSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFS 358 (466)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (466)
...+.+.+++++|++..+++.||+|||..+.+..++..++.+++..... .+.....++.-++.+...+..
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~----------~~~~e~li~GR~i~Gl~~gl~ 133 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS----------APSFEMLILGRLIVGLACGLS 133 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHhHHH
Confidence 5667888999999999999999999999999888888888777776642 244555666666666666665
Q ss_pred ccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH-HHHHhhcc-cceehhhHHHHHHHHHhhheecccCCC
Q 048207 359 WGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTF-LAMLCHFK-AGVFFFFGGWLTVMTTFVHFFLPETKN 433 (466)
Q Consensus 359 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (466)
.... ..+..|+.|++.||....+......+|..++..+. ..+..+.. |...+.+..+..++..+...++||..+
T Consensus 134 ~~~~-pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 134 TGLV-PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HHHH-HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 5555 56668999999999998888888888777774443 33333322 444555555566666777788888754
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-09 Score=105.64 Aligned_cols=156 Identities=13% Similarity=-0.031 Sum_probs=111.9
Q ss_pred HHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHH
Q 048207 247 PFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIM 326 (466)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 326 (466)
..+.+.........-.+.+-++++++..+.+ ++.+.+.++..++.++.+++.||.+||+.+.++.++.+++.+++.+..
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G-~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSG-LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcce-eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence 3443333334445555667778999999888 889999999999999999999999999999999999999988887654
Q ss_pred HhhcCCC---------------------C------------Ccc--c--h-hhHHHHHHHHHHHHhhhcccccccccccc
Q 048207 327 AAQLGDH---------------------G------------GFS--I--G-YAYLILVLICVYKAGFGFSWGPLGWLVPS 368 (466)
Q Consensus 327 ~~~~~~~---------------------~------------~~~--~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (466)
+..-... . ... . . ....+++.-++.+.+.+.. .+....++.
T Consensus 120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~-~~~~~~~i~ 198 (633)
T TIGR00805 120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI-FPLGISYID 198 (633)
T ss_pred HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc-hhcCchhhh
Confidence 2210000 0 000 0 1 1223334445555554433 345567889
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 048207 369 EIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCH 404 (466)
Q Consensus 369 ~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
|.+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999998887754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.7e-09 Score=99.68 Aligned_cols=165 Identities=14% Similarity=0.109 Sum_probs=106.7
Q ss_pred cchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC
Q 048207 254 GVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333 (466)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
..+.+..+.+.+.+++|++..+.+ ....... ......++.|++.||+|+|+++.++.++..++.++.++.....
T Consensus 42 ~~y~fsv~s~~L~~~lgls~~~l~-~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~---- 115 (591)
T PTZ00207 42 FMYAFNLISGAMQARYNLTQRDLS-TITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV---- 115 (591)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHH-HHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 345667788888889999988877 5554432 3334566789999999999999999999999988877652100
Q ss_pred CCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhh
Q 048207 334 GGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFF 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
-..+.+...+..++.+.+.+...... ...+.+.+| +.||.+.|+......+|+++.+++...+........+++.
T Consensus 116 ---i~~s~~~l~l~r~l~G~G~~~~~~~~-~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l 190 (591)
T PTZ00207 116 ---IEGSVVRLSVYNGLMTLGCMLFDLGA-VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFL 190 (591)
T ss_pred ---ccCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 00223444444444444443333333 334467887 7899999999999999998777777666543222334444
Q ss_pred HHHHHHHHHhhheecc
Q 048207 414 GGWLTVMTTFVHFFLP 429 (466)
Q Consensus 414 ~~~~~~~~~~~~~~~~ 429 (466)
+.+..+.+++...+++
T Consensus 191 ~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 191 MSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHhhee
Confidence 4444444444444444
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-09 Score=84.24 Aligned_cols=134 Identities=19% Similarity=0.160 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccc
Q 048207 282 LVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGP 361 (466)
Q Consensus 282 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (466)
....++.+++.++.+++.||++||+.+..+.....++.+..... .+.+.......+.+.+.+... +
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~-~ 70 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAFAL-V 70 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHHH-H
Confidence 34567788899999999999999999888777777666655432 223334444445554444333 3
Q ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhH-HHHHHHHHhhheecc
Q 048207 362 LGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFG-GWLTVMTTFVHFFLP 429 (466)
Q Consensus 362 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 429 (466)
....+..|.+|++.|+++.++.+....++..+++.+.+.+.+..++...+... ....+.....+...|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 34566689999999999999999999999999999999998877764444433 333333333433333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=97.45 Aligned_cols=138 Identities=13% Similarity=0.009 Sum_probs=104.3
Q ss_pred ccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCC
Q 048207 253 TGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGD 332 (466)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (466)
..........|.+.++++.+..+.+ +....+.++..++.++.|++.||+|||+.+..+..+..++.+++....
T Consensus 40 ~~~~~~~~~~p~i~~~~~~s~~~~g-l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~------ 112 (438)
T PRK10133 40 VANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA------ 112 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3346667778888888999998888 888999999999999999999999999999999998888887653221
Q ss_pred CCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048207 333 HGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAML 402 (466)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 402 (466)
..++.+..+....+.+.+.+...... ..+..|..|++.|...+++.+....+|..+++.+.+.+.
T Consensus 113 ----~a~~~~~ll~~r~l~G~g~g~~~~~~-~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 113 ----EIMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred ----hcCCHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11334455556666666666555555 344457777666666789999999999988888776554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.3e-09 Score=112.35 Aligned_cols=141 Identities=14% Similarity=0.029 Sum_probs=121.8
Q ss_pred cccccccCCcc-hhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhh
Q 048207 25 KVSDYCKFDSQ-LLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGID 103 (466)
Q Consensus 25 ~i~~~~~~s~~-~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g 103 (466)
.+++++|++.. +.+++.+...++..++++++|+++||+++|+.+.++.++.+++.++..+.++.+.+++..++.|++.+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34567889998 99999999999999999999999999999999999999999988888888899999999999999999
Q ss_pred hhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHH
Q 048207 104 FGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPA 167 (466)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~ 167 (466)
...+...+++.+..|+++|++++++.+....+|.++++.+++.+... + .++...+++.+.+.
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~ 399 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL-G-LSPAGLFYLIALVT 399 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh-c-cCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888887766542 1 34666666555443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.1e-09 Score=90.39 Aligned_cols=344 Identities=11% Similarity=0.078 Sum_probs=210.8
Q ss_pred cccCCcchhH-HHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhh
Q 048207 29 YCKFDSQLLT-SLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQ 107 (466)
Q Consensus 29 ~~~~s~~~~g-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 107 (466)
+-|++..|+. -+.-...-.+.+.-++.=.+.|-.-.|+++++-.+.......+..+.++.+.+=+.-++.|...+ ...
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEI 113 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEI 113 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHH
Confidence 4456665543 22333344566667777789999999999999888888888899999999999999999999876 456
Q ss_pred hhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccCChhhhhhc
Q 048207 108 SVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPETPNSIIQR 187 (466)
Q Consensus 108 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~es~~~~~~~ 187 (466)
.-++++-+..+|+++.++.+...+..-.|...|..++-.+..... .++...-.+......+.....+++|..+|.+.-+
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~-~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET-LSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc-cchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 788899999999999999999999999999999888887766432 3455555555555556667777888776544444
Q ss_pred CCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhhHHHHHh
Q 048207 188 TNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFYAPVLFR 267 (466)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (466)
+++.+.. ..+....++ +.+..+..+ .....+.+-++.-.+++.++-..++.....++++-...|...+.+
T Consensus 193 ~~~~~~~---v~~~e~~~~-~~~~~~~l~------~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~ 262 (433)
T KOG3810|consen 193 RLEDKIS---VGDLEEMNP-QASYMSYLR------GAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWK 262 (433)
T ss_pred cccccce---eccchhcCc-cchhhHHHH------HHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHH
Confidence 3311111 000000000 000000000 000111212223344455555666667777778888888888877
Q ss_pred hhC-CCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 048207 268 TIK-LSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILV 346 (466)
Q Consensus 268 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
+.. -+.....+..=.+..+.++++.+..|++--++.|..-+.++..-...+.+++... ..++.|...+
T Consensus 263 ~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-----------~t~~Iw~~Ya 331 (433)
T KOG3810|consen 263 EVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-----------QTQHIWVCYA 331 (433)
T ss_pred hhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-----------cccceehhhh
Confidence 653 1112222234455556677778888888766666533333322222222222221 2345677777
Q ss_pred HHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHH
Q 048207 347 LICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQ 396 (466)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~ 396 (466)
...++...+..........+ ++....+.-|..+|+..++.-+...+...
T Consensus 332 ~yvlfr~~y~l~itiA~~~i-A~nL~~e~~gLvFGiNTFvAl~lQsilT~ 380 (433)
T KOG3810|consen 332 GYVLFRVIYQLTITIATFQI-ARNLSSELFGLVFGINTFVALILQSILTL 380 (433)
T ss_pred hHHHHHhhHhhhhhHHHHHH-HHhhhhhhheeeeehHHHHHHHHHHhheE
Confidence 77777666665544443344 45566677788888888766655544443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-08 Score=96.67 Aligned_cols=124 Identities=10% Similarity=-0.008 Sum_probs=101.2
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc--chhHHHHHHHHhhhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF--NIYMLIFGRLLLGVGID 103 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g 103 (466)
.++.+|.++...++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +++.+++..++.|+|.+
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~ 334 (448)
T PRK09848 255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG 334 (448)
T ss_pred EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 3455676666555555555678888999999999999999999999999888888777654 66777778889999999
Q ss_pred hhhhhhhHHHHhcCCCc-------ccCchhhHHHHHHHHHHHHHHHHhhhhcc
Q 048207 104 FGNQSVPLYLSEMAPPK-------CRGAFNIGFQVCVATGILSANLLNYGTQK 149 (466)
Q Consensus 104 ~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~ 149 (466)
...+...++.+|..|++ ++|...+..+....+|..+|+.+.+.+.+
T Consensus 335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988754 35888999999999999999988776654
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=84.42 Aligned_cols=311 Identities=14% Similarity=0.099 Sum_probs=178.6
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFG 105 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 105 (466)
+-+.++....++|.+.-..+-...+...+.|-++|+-|||+.-+.-++.+.++++ .-.+++|-.++++|.+-|++.+..
T Consensus 63 LYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLL 141 (454)
T KOG4332|consen 63 LYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLL 141 (454)
T ss_pred eehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHH
Confidence 3456788889999988888888889999999999999999977666666666553 345789999999999999999998
Q ss_pred hhhhhHH-HHhcCCCcccCchhhHHHHHHH----HH----HHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHH-HHHhh
Q 048207 106 NQSVPLY-LSEMAPPKCRGAFNIGFQVCVA----TG----ILSANLLNYGTQKIKGGWGWKISLAMAAAPASIL-TIGSL 175 (466)
Q Consensus 106 ~~~~~~~-i~~~~~~~~r~~~~~~~~~~~~----~G----~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~ 175 (466)
+..-.++ +.|.- ++|+.-.-+...... +| .+++.+.+..+.+..+ .|--.+|-..+.+..+. .++.-
T Consensus 142 FSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~s-lGPVAPFdAAacfLaigmAvil~ 218 (454)
T KOG4332|consen 142 FSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS-LGPVAPFDAAACFLAIGMAVILS 218 (454)
T ss_pred HHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHh
Confidence 8888775 56654 345443333222221 23 3333344444444222 23345555544333332 22221
Q ss_pred cccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccc
Q 048207 176 FLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGV 255 (466)
Q Consensus 176 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (466)
-..|. -++ +.|.++..++.+ ...+.+..+ ++..+...+...+....+
T Consensus 219 ~W~EN------ygd-ps~~kdlltqf~-----------------------gaa~aiaSD---~ki~LLG~iqsLFE~smy 265 (454)
T KOG4332|consen 219 SWSEN------YGD-PSENKDLLTQFK-----------------------GAARAIASD---EKIALLGAIQSLFEGSMY 265 (454)
T ss_pred hhhhc------cCC-hhhhHHHHHHhh-----------------------HhHHHHhcc---hHHHHHHHHHHHHhhhhh
Confidence 11111 111 222222211111 111111111 234444455555555555
Q ss_pred hhHHhhHHHHHh-hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCe--eeehhhhHHHHHHHHHHHHHHHhhcCC
Q 048207 256 NIISFYAPVLFR-TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRK--VLFLLGGIQMLVSQVMIGSIMAAQLGD 332 (466)
Q Consensus 256 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (466)
.....|.|.+-. +.+ ...+ .++..+.++.++|+-+..++..|-..| ..+.+......+.+.+..........
T Consensus 266 tFVFLWTPaLspn~e~---iPhG-fiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~- 340 (454)
T KOG4332|consen 266 TFVFLWTPALSPNDEE---IPHG-FIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPS- 340 (454)
T ss_pred eeeeeecccCCCCccc---CCch-hHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCC-
Confidence 566667776531 112 2233 667777788888888887777664433 34445555555544444433322111
Q ss_pred CCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHH
Q 048207 333 HGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITV 384 (466)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 384 (466)
...+...++..+.+-.+.+..++.+.. +-++..|.+.|++.+-+..
T Consensus 341 -----kes~~~s~i~F~~~E~cvGlfwPSimk-mRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 341 -----KESPSESLIGFCLFEACVGLFWPSIMK-MRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred -----cCCchHHHHHHHHHHHHHhhcchHHHH-HHHhhCCHHHHhhhhhhee
Confidence 133344477778888888888888744 4478899999888765544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.3e-09 Score=94.15 Aligned_cols=142 Identities=26% Similarity=0.275 Sum_probs=117.3
Q ss_pred cccccCCc--chhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccc--hhHHHHHHHHhhhhh
Q 048207 27 SDYCKFDS--QLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFN--IYMLIFGRLLLGVGI 102 (466)
Q Consensus 27 ~~~~~~s~--~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~--~~~l~~~r~l~G~~~ 102 (466)
.++++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++.++ .+.+++.|+++|++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 108 (338)
T COG0477 29 LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGG 108 (338)
T ss_pred HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhh
Confidence 34444444 57899999999999999999999999999999888888776777777777776 899999999999999
Q ss_pred hhhhhhhhHHHHhcCCC-cccCchhhHHHH-HHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHH
Q 048207 103 DFGNQSVPLYLSEMAPP-KCRGAFNIGFQV-CVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASI 169 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 169 (466)
+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+... ...+||..|.........
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 109 GGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 99999999999999987 678888888888 5888889998887776655 446799977666655543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=109.56 Aligned_cols=142 Identities=11% Similarity=0.008 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcc
Q 048207 279 MSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFS 358 (466)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (466)
+......+..++.+++.|+++||++||+++........+......... ...+.+..+++.++.+.+.+..
T Consensus 56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~----------~~~s~~~l~~~~~l~gi~~a~~ 125 (1140)
T PRK06814 56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGF----------HLNSVPLLFAALFLMGIHSALF 125 (1140)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH----------HHhhHHHHHHHHHHHHHHHHhh
Confidence 666778888899999999999999999976432222222222111111 0023445555555555555444
Q ss_pred ccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHHHHhhheecccC
Q 048207 359 WGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMTTFVHFFLPET 431 (466)
Q Consensus 359 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
.|....++.+.+|++.++.++|+.++...++..++|.+.+.+.+..++...++..++..+.+.++.+.++++
T Consensus 126 -~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 126 -GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred -chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 444466668999999999999999999999999999999999998887666655555555555555555554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-08 Score=93.90 Aligned_cols=159 Identities=11% Similarity=0.002 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhh----hcCCeeeehhh-hHH
Q 048207 240 LVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD----KLGRKVLFLLG-GIQ 314 (466)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~ 314 (466)
.+.........++. +.....+.+.|+++.|.+....+ .......+.+++..++.|+++| |+|||+.++.. ...
T Consensus 6 li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~-~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 6 LLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWAS-IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 34444444444443 45566667778899999888888 8888999999999999999999 59999998765 444
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccch----hhHHHHHHHHHHHHhhhccccccccccccccccccch--hhhhHHHHHHHH
Q 048207 315 MLVSQVMIGSIMAAQLGDHGGFSIG----YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIR--SAGQSITVAVGL 388 (466)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~ 388 (466)
..+++.++.+.........+..+.. ..+..+....+..........|. .++++|..|+++| +.+.++.+....
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~ 162 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMA 162 (477)
T ss_pred HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHH
Confidence 4444444443221100000000000 01222333334444555455555 5667899998865 578998888999
Q ss_pred HHHHHHHHHHHHH
Q 048207 389 LFTSLVAQTFLAM 401 (466)
Q Consensus 389 ~~~~~~~~~~~~~ 401 (466)
+|+.+++.+.+..
T Consensus 163 lG~ilg~~~g~~~ 175 (477)
T TIGR01301 163 IGNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHHH
Confidence 9888888776653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.1e-07 Score=82.78 Aligned_cols=336 Identities=13% Similarity=0.016 Sum_probs=171.0
Q ss_pred hhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhh------c--c----chhHHHHHH---HHhhh-hhhhhh
Q 048207 43 SLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS------A--F----NIYMLIFGR---LLLGV-GIDFGN 106 (466)
Q Consensus 43 ~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~------~--~----~~~~l~~~r---~l~G~-~~g~~~ 106 (466)
.-.+...+.++..|.+.||..|.++...+.+..-++..+++. . + +-+....+. .+.|. ..=...
T Consensus 46 ~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~ 125 (432)
T PF06963_consen 46 VRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASI 125 (432)
T ss_pred HHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 344566778888999999999999987776654333333221 1 1 112222111 12221 111111
Q ss_pred hhhhHHHHhcC------CCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh-hcc--
Q 048207 107 QSVPLYLSEMA------PPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS-LFL-- 177 (466)
Q Consensus 107 ~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~-- 177 (466)
....+.=.||. +++.+.+.++...-.-.+..+++|++.+.+....+ .+....+.+...++.+..= +++
T Consensus 126 ~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s---~~~~~~~i~~~N~~S~~vEy~~l~~ 202 (432)
T PF06963_consen 126 ANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFAS---PVIAAIFIAGWNLASVFVEYFLLAR 202 (432)
T ss_pred hhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223443 33445667777777778889999999988877533 6666555555554443321 111
Q ss_pred --cCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccc
Q 048207 178 --PETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGV 255 (466)
Q Consensus 178 --~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (466)
...|. +..++++.++......+ ..++.+.+.+..++..+.-++....++..++.+ .+...+...+.+++..
T Consensus 203 VY~~~P~-L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~----vflas~alalLY~TVL 275 (432)
T PF06963_consen 203 VYNSVPA-LAVKKRSSESESSSDEE--SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQP----VFLASFALALLYFTVL 275 (432)
T ss_pred HHHhChH-hcCCCCCcccccccccc--ccccccchhhHHHHHHHHHHHHhccHHHHHhCH----HHHHHHHHHHHHHHHh
Confidence 22332 22222111110000000 000000000000000011111123444444443 3332222222222211
Q ss_pred hhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 048207 256 NIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG 335 (466)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
.+......|....|+++...+ ..-....+.++.++++..++.+|+|..+.-.++......++.+...........
T Consensus 276 -sf~~lmt~yl~~~G~s~~~ig-i~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~--- 350 (432)
T PF06963_consen 276 -SFGGLMTAYLKSQGYSPSVIG-IFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP--- 350 (432)
T ss_pred -cCcHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC---
Confidence 223344556667799998888 888888999999999999999999998887777776665555444333221000
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHH
Q 048207 336 FSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLV 394 (466)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~ 394 (466)
.+.......+....+--.+.-. +.....-+..|..|+++||+..|+-+...++...+.
T Consensus 351 ~~~~s~~~l~~gi~~SR~GLW~-fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 351 FSSISAYLLLGGIALSRIGLWS-FDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred chhhHHHHHHHHHHHHHHHHHh-hhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 0111222233333333333222 222224445899999999999999998888865443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-07 Score=83.21 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=98.2
Q ss_pred HHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHHHHhcC
Q 048207 38 TSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMA 117 (466)
Q Consensus 38 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 117 (466)
+.+.-+-.+...+.-+.+.+..+|+..+.=...+..+..++.++.++++|.+.=+++-.+.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44455555666666777788889987666666777788999999999999999999999999999988887777644 55
Q ss_pred CCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc-ccC
Q 048207 118 PPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF-LPE 179 (466)
Q Consensus 118 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 179 (466)
++ ...+-+.++.+.+.++|+..-..+.. .+ .+-|..+++..++.++..+..++ +|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g-~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LG-LSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hC-cCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 53 35788888888888888877655655 33 44677777777665555444444 443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.1e-09 Score=96.15 Aligned_cols=127 Identities=13% Similarity=-0.033 Sum_probs=102.3
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhh-cchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRAL-GGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDF 104 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~ 104 (466)
..++.|.+..+.+.+.+...++..++.++.|++.||+ +||+.+..+..+.+++.++..+.++..... .-++.|++.+.
T Consensus 223 ~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~ 301 (355)
T TIGR00896 223 ILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGG 301 (355)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhh
Confidence 3456788999999999999999999999999999999 567777788888888877777765543332 45788999998
Q ss_pred hhhhhhHHHHhcCC-CcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCC
Q 048207 105 GNQSVPLYLSEMAP-PKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGG 153 (466)
Q Consensus 105 ~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 153 (466)
..+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.+..++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 302 AFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88887777766555 45678888998888889999999999988876553
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-08 Score=96.20 Aligned_cols=153 Identities=7% Similarity=-0.034 Sum_probs=123.8
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc----------cchhHHHHHHH
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA----------FNIYMLIFGRL 96 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----------~~~~~l~~~r~ 96 (466)
.+++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+...+. ++.+.++..-+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 35789999999999999999999999999999999999999999999999988664311 44456666788
Q ss_pred HhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCC----CcchHHHHH-hhhHHHHHHH
Q 048207 97 LLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKG----GWGWKISLA-MAAAPASILT 171 (466)
Q Consensus 97 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~~wr~~f~-~~~~~~~~~~ 171 (466)
+.+++.+........++++..|+++++...++..+..++|..+++.+++.+.+..+ +++.++... +..+..++.+
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l 439 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL 439 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877544 123333332 3334444445
Q ss_pred HHhhcccC
Q 048207 172 IGSLFLPE 179 (466)
Q Consensus 172 ~~~~~~~e 179 (466)
....++|+
T Consensus 440 ~~~~llP~ 447 (468)
T TIGR00788 440 PLLHLLPR 447 (468)
T ss_pred HHHHhCCC
Confidence 55557786
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.1e-06 Score=79.13 Aligned_cols=123 Identities=10% Similarity=-0.018 Sum_probs=94.2
Q ss_pred ccccccC-----CcchhHHHHHhhhHHHHHH-HHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc----c---------
Q 048207 26 VSDYCKF-----DSQLLTSLTSSLYITGILA-SLIASSVTRALGGKVSILIGGVAFLAGSALGGSA----F--------- 86 (466)
Q Consensus 26 i~~~~~~-----s~~~~g~~~s~~~l~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----~--------- 86 (466)
++|.+.+ +.+.+.++-+...+..++. .++.+++++|++|++++-.....+....+++++. +
T Consensus 29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~ 108 (472)
T TIGR00769 29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALA 108 (472)
T ss_pred hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHH
Confidence 4555544 3467889988888877776 8999999999999999988777777766666554 1
Q ss_pred ------------------chhHHHHHHHHhhhhhhhhhh-hhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhh
Q 048207 87 ------------------NIYMLIFGRLLLGVGIDFGNQ-SVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGT 147 (466)
Q Consensus 87 ------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 147 (466)
+.|...+..+...+-...... .-..+..|.++.+|-.|..+++..+.++|.++++.+...+
T Consensus 109 ~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 109 DKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133444445555555555555 6778899999999999999999999999999999887776
Q ss_pred c
Q 048207 148 Q 148 (466)
Q Consensus 148 ~ 148 (466)
.
T Consensus 189 ~ 189 (472)
T TIGR00769 189 S 189 (472)
T ss_pred H
Confidence 6
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=94.87 Aligned_cols=162 Identities=18% Similarity=0.094 Sum_probs=103.7
Q ss_pred hhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhc-----CCeeee-hhhhHHHHHHHHHHHHHHHhh
Q 048207 256 NIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKL-----GRKVLF-LLGGIQMLVSQVMIGSIMAAQ 329 (466)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 329 (466)
.....-.|.+.++.|++..+.+ ..... .+...+ .++.|+++||+ ||||.+ ..+.+...++...+.+..
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g-~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~--- 78 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIG-FFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV--- 78 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHH-HHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---
Confidence 3455567888899999998877 55433 333333 88999999997 788875 445555555544443321
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc---
Q 048207 330 LGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK--- 406 (466)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--- 406 (466)
+....+.......+.+.+.+ ...+....++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+
T Consensus 79 -------~~~~l~~l~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~ 150 (356)
T TIGR00901 79 -------PSTDLPLLAGLAFLIAFFSA-TQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT 150 (356)
T ss_pred -------cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 11222223333233333332 2334335666899999999999999999999999999999988887777
Q ss_pred -----cceehhhHHHHHHHHHhhhe-ecccC
Q 048207 407 -----AGVFFFFGGWLTVMTTFVHF-FLPET 431 (466)
Q Consensus 407 -----~~~~~~~~~~~~~~~~~~~~-~~~~~ 431 (466)
|...+...+++.+...+..+ ..+|+
T Consensus 151 ~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 151 GLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 66666655555555444433 34553
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-09 Score=99.35 Aligned_cols=154 Identities=14% Similarity=0.037 Sum_probs=138.3
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhc--chHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALG--GKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGV 100 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 100 (466)
.|...++.+.+..+...+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+.+.+.++++.++..-.+.|+
T Consensus 321 l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~ 400 (509)
T KOG2504|consen 321 LPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGF 400 (509)
T ss_pred HHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34446688999999999999999999999999999999988 5567788899999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhccc
Q 048207 101 GIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLP 178 (466)
Q Consensus 101 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 178 (466)
+.|.........+.|..+.++-..+.|+.....+++.++||++++.+.+..+ +|...|+..++..++....++..|
T Consensus 401 ~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 401 CVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--CeeeehhhcChHHHHHHHHHHHhH
Confidence 9999998888899999999999999999999999999999999998887655 388999999988888777776665
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-08 Score=89.24 Aligned_cols=131 Identities=10% Similarity=-0.005 Sum_probs=105.3
Q ss_pred cccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhh
Q 048207 29 YCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQS 108 (466)
Q Consensus 29 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 108 (466)
.+|+++.+.++..+.+..+..+|.+..+++.||+|+|+.+.++..+..++.++....++... ...-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999998888888887776666555433 34566899999999999
Q ss_pred hhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhH
Q 048207 109 VPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAA 165 (466)
Q Consensus 109 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~ 165 (466)
..+...+..|++ .+++.++. ....+|.++.|.+.+.+.+.. |.+..|++..+
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~---g~~~a~~v~~~ 302 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL---GIQLAFALPVP 302 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc---cchHHHHHHHH
Confidence 999998888754 45666765 556689999999888887753 47777764443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.9e-09 Score=92.52 Aligned_cols=147 Identities=12% Similarity=0.056 Sum_probs=114.5
Q ss_pred CCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHH
Q 048207 271 LSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICV 350 (466)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (466)
-...+.+ +++....+.+++.+++.|.+.||+|+|..++++..++..+.+++++. +..+..++.=.+
T Consensus 103 ~e~~~iG-~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------------~sy~~l~vAR~L 168 (464)
T KOG3764|consen 103 RENTQIG-LLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------------NSYPMLFVARSL 168 (464)
T ss_pred ccccchh-HHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------------chhHHHHHHHHH
Confidence 3444555 89999999999999999999999999999999999999999998875 334455666666
Q ss_pred HHHhhhccccccccccccccccccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHHH-Hhhheec
Q 048207 351 YKAGFGFSWGPLGWLVPSEIFPLEI-RSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMT-TFVHFFL 428 (466)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (466)
-+.+.+.....- ..+.++.+|.+. |++++|+.-.+..+|-.++|++.|.+++..|....++..++..+.- .+..+.+
T Consensus 169 QgvgsA~~~tsg-lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 169 QGVGSAFADTSG-LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred hhhhHHHHHhhh-HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence 666666655554 455579998875 6999999999999999999999999999999777666655555544 4444444
Q ss_pred ccCC
Q 048207 429 PETK 432 (466)
Q Consensus 429 ~~~~ 432 (466)
+.++
T Consensus 248 ~p~~ 251 (464)
T KOG3764|consen 248 EPTE 251 (464)
T ss_pred Cccc
Confidence 4333
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-08 Score=85.09 Aligned_cols=173 Identities=17% Similarity=0.195 Sum_probs=114.4
Q ss_pred HHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHH
Q 048207 246 IPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSI 325 (466)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 325 (466)
+.........+.+..|.|.+-+++|++..+.. .+.....++.-+ .++.|.+.|++|++..+.++.....++..++...
T Consensus 9 ~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~-~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~ 86 (250)
T PF06813_consen 9 IWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLN-TLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA 86 (250)
T ss_pred HHHHHhcCcccchhhhhHHHHHHhCCCHHHHH-HHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445678889999999999999999888 777777777765 5888999999999999999999999998888766
Q ss_pred HHhhcCCCCCccchhhHHHHHHHHHHHHhhhccc-cccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 048207 326 MAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSW-GPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCH 404 (466)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
..... +....|...+..++ .+.+..+ .........+.+| ++||++.|+.-.+..+++++-..+...+.+.
T Consensus 87 ~~~~i------~~~~~~~~~~~~~l--~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 87 VSGRI------PSLPVWLMCLFLFL--GGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HhCcc------CccchHHHHHHHHH--HcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 52210 11122222222222 2222222 2222233347788 5899999999999999999999888887766
Q ss_pred cccceehhhHHHHHHHHHhhheecc
Q 048207 405 FKAGVFFFFGGWLTVMTTFVHFFLP 429 (466)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (466)
.......+.+....+++++...+++
T Consensus 158 ~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 158 DPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhee
Confidence 4333333334333444444444443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-08 Score=95.15 Aligned_cols=149 Identities=18% Similarity=0.095 Sum_probs=117.4
Q ss_pred hhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHH
Q 048207 268 TIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVL 347 (466)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
++.++..+.+ ++.+....+.+++.+.++++.||+|.|+++..+.++..+..++..+... ...+..++.
T Consensus 67 ~~~ws~~~k~-~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----------~~~~~~~~~ 134 (466)
T KOG2532|consen 67 EYDWSSTEKG-LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----------IGFYLLLVL 134 (466)
T ss_pred eecCCHHHHH-HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----------hcchhhHHH
Confidence 4567777777 8899999999999999999999999999999999999998888887652 223355666
Q ss_pred HHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhh-cccceehh-hHHHHHHHHHhhh
Q 048207 348 ICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCH-FKAGVFFF-FGGWLTVMTTFVH 425 (466)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 425 (466)
-++.+.+.+..++.+ ..+.+.-.|+++|++..++.....++|..+.-++.|.+.+. .||...+. .+++.++..++.+
T Consensus 135 R~lqGl~~g~~~pa~-~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~ 213 (466)
T KOG2532|consen 135 RFLQGLGQGVLFPAI-GSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWF 213 (466)
T ss_pred HHHhHHHHhHHHhhh-hceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 677777777777777 45557999999999999999999999999999999999998 78665444 4444444444433
Q ss_pred eecc
Q 048207 426 FFLP 429 (466)
Q Consensus 426 ~~~~ 429 (466)
++..
T Consensus 214 ~~~~ 217 (466)
T KOG2532|consen 214 LFYS 217 (466)
T ss_pred HHhc
Confidence 3333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.3e-08 Score=83.58 Aligned_cols=150 Identities=11% Similarity=-0.001 Sum_probs=114.4
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHH-HHHHHhhhhhccchhHHHHHHHHhhhhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVA-FLAGSALGGSAFNIYMLIFGRLLLGVGIDF 104 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~ 104 (466)
-++.||+|+...+.+.+....-.++.+++.|.++||+|++...+.+..+ +.++..+..| +++.=..+..+.|++.+.
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysl 368 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSL 368 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHH
Confidence 3688999999999999999999999999999999999999887775544 4444444433 333344566778888776
Q ss_pred hhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHh-hhHHHHHHHHHhhcc
Q 048207 105 GNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAM-AAAPASILTIGSLFL 177 (466)
Q Consensus 105 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~-~~~~~~~~~~~~~~~ 177 (466)
........++-..|+++.|++.+..+...++|..+.|++++.+.+..+.+.|--.|.+ .+.+++....+.+.+
T Consensus 369 lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 369 LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 6555666778888999999999999999999999999999999987665666555544 445555555444444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=88.61 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=119.6
Q ss_pred CCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc-cchhHHH----HHHHHhhhhhhhhh
Q 048207 32 FDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA-FNIYMLI----FGRLLLGVGIDFGN 106 (466)
Q Consensus 32 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~----~~r~l~G~~~g~~~ 106 (466)
.+....+.+.+...++-...-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+... +...++|+..+..+
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 567777888888888888999999999999999999999999999998888887 5544433 34567999999999
Q ss_pred hhhhHHHHhcCCCcccCchhhHHHHH-HHHHHHHHHHHhhhhcccCCC---cchHHHHHhhhHHHHHHHHHhh-cccC
Q 048207 107 QSVPLYLSEMAPPKCRGAFNIGFQVC-VATGILSANLLNYGTQKIKGG---WGWKISLAMAAAPASILTIGSL-FLPE 179 (466)
Q Consensus 107 ~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~---~~wr~~f~~~~~~~~~~~~~~~-~~~e 179 (466)
.....++.+..|++.|+++.+++... .++|..+|..++|.+.+..+. +.|...+.+.++..++..+++. +.+|
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999998764 689999999999999876542 3466677777766665544433 3444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=97.33 Aligned_cols=138 Identities=20% Similarity=0.191 Sum_probs=95.2
Q ss_pred hHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 261 YAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
-.+.+.++.|-++... ++.....++..++.++.|+++|.+|||..++.+.++..++.++.+.. ++
T Consensus 66 ~l~~I~~diG~~~~~~--w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------------~~ 130 (599)
T PF06609_consen 66 ILPYINADIGGSDNWS--WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------------QN 130 (599)
T ss_pred HHHHHHHhcCCCccch--HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------------Cc
Confidence 3455667777765443 56677888999999999999999999999999999999998887743 44
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHH
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGG 415 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (466)
....+....+.+.+.+.. .+....++|..|.+.|..+.++.....-.....++.+...+..+.+|++.+.+..
T Consensus 131 ~~~~iag~~l~GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~ 203 (599)
T PF06609_consen 131 MNTFIAGMVLYGVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFI 203 (599)
T ss_pred HHHHHHHHHHHHHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHH
Confidence 555666666666654433 2334556899999999888776665444434455555555554445555444333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.4e-08 Score=96.20 Aligned_cols=145 Identities=12% Similarity=0.072 Sum_probs=105.5
Q ss_pred hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHH
Q 048207 269 IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLI 348 (466)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (466)
...+..... ...+++.++.++|.++.|.++||+|||+++.++.++..++.+..++. ++.+..++.-
T Consensus 113 ~c~~~~~~~-~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~~~~~~R 178 (521)
T KOG0255|consen 113 VCDSSTLVA-LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYWMFLIFR 178 (521)
T ss_pred eeCcHhHHH-HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHHHHHHHH
Confidence 344444445 77888899999999999999999999999999999998888766654 3344555555
Q ss_pred HHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHHHHhhheec
Q 048207 349 CVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMTTFVHFFL 428 (466)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (466)
++.+++.+.... ..+.+..|.++++.|+.+..+ ..+...++.++++..+++.. +|........+..+..++.+++.
T Consensus 179 fl~G~~~~~~~~-~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 179 FLSGFFGSGPLT-VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLP 254 (521)
T ss_pred HHHHhhccchhH-HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHcc
Confidence 555555544443 446777899999999999999 88888889999999998887 44444444444444444445555
Q ss_pred ccC
Q 048207 429 PET 431 (466)
Q Consensus 429 ~~~ 431 (466)
+|.
T Consensus 255 ~Es 257 (521)
T KOG0255|consen 255 PES 257 (521)
T ss_pred CcC
Confidence 454
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-10 Score=109.60 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcc
Q 048207 279 MSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFS 358 (466)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (466)
.......++.++|+++.|++.||+|||+.+..+..+..++.++..+.. ...+.+...+.-++.+.+.+..
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP----------SYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccccccc
Confidence 677888899999999999999999999999999999888888777642 0013455555556666666555
Q ss_pred ccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHh---hcccceehhhHHHHHHHHHhhheecccC
Q 048207 359 WGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLC---HFKAGVFFFFGGWLTVMTTFVHFFLPET 431 (466)
Q Consensus 359 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
.... ..+..|..|++.|+...++.+....+|..++..+.-...+ ...|.....+..+..+...+...++||.
T Consensus 120 ~~~~-~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 120 YVVS-PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5444 6777899999999999888887777766555544332222 1235666666666665556666777876
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-07 Score=91.12 Aligned_cols=138 Identities=20% Similarity=0.123 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcc
Q 048207 279 MSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFS 358 (466)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (466)
++.+...++..+++++.|+++|++|||+.+.++.+...++.++.... .+.....+.-++.+.+.+..
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------------~~~~~l~~GR~l~G~g~G~~ 159 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------------PSWYQLIVGRILTGLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHhccchhhh
Confidence 88899999999999999999999999999999999999999888876 34566677777777777666
Q ss_pred ccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc--ccceehhhHHHHHHHHHhhheecccC
Q 048207 359 WGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF--KAGVFFFFGGWLTVMTTFVHFFLPET 431 (466)
Q Consensus 359 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
.... ..+.+|..|++.||...+..+....+|..++ .+.+...++. +|...+....+..+...+..++.||+
T Consensus 160 ~~~~-piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes 232 (513)
T KOG0254|consen 160 SVLA-PVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES 232 (513)
T ss_pred hhcc-hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5554 6777999999999999999888888655555 6666666553 56655555555555544456677765
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=87.26 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=121.5
Q ss_pred CcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHH
Q 048207 33 DSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLY 112 (466)
Q Consensus 33 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 112 (466)
+....|.+.+...+.-++...+..++.+|+|.|+.++++..++.+=.+++++++|.+.+.+.+.+.|+-.+........|
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY 336 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY 336 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcccCchhhH-HHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc-ccC
Q 048207 113 LSEMAPPKCRGAFNIG-FQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF-LPE 179 (466)
Q Consensus 113 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 179 (466)
+++.+|++-.++...+ .+.+.++|..+.+.++|.+.+. .|.+..|++.+.+.++..+...+ +++
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~---~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR---IGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh---cCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 9999998877666666 4678889999999999988885 45888998888777766555544 443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.3e-07 Score=87.26 Aligned_cols=117 Identities=10% Similarity=0.088 Sum_probs=93.1
Q ss_pred CcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhh-----ccchhHHHHHHHHhhhhhhhhhh
Q 048207 33 DSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS-----AFNIYMLIFGRLLLGVGIDFGNQ 107 (466)
Q Consensus 33 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~ 107 (466)
+....+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777899999999999999999999999888877766655432 34567777788899999999999
Q ss_pred hhhHHHHhcCCC-------cccCchhhHHHHHHHHHHHHHHHHhhhhcc
Q 048207 108 SVPLYLSEMAPP-------KCRGAFNIGFQVCVATGILSANLLNYGTQK 149 (466)
Q Consensus 108 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~ 149 (466)
...++++|..+. ++.|..++......-+|..+++.+.+.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999762 223447888888888999999888877654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=84.37 Aligned_cols=116 Identities=14% Similarity=0.050 Sum_probs=90.0
Q ss_pred hhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhh--ccchhHHHHHHHHhhhhhhhhhhhhhHHH
Q 048207 36 LLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS--AFNIYMLIFGRLLLGVGIDFGNQSVPLYL 113 (466)
Q Consensus 36 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 113 (466)
..+.+.....+...++.+++++++||+|+|+.+..+..+..+..+...+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677888889999999999999999998888766654433222 35777788888999999999999999999
Q ss_pred HhcCCCc-------ccCchhhHHHHHHHHHHHHHHHHhhhhcccC
Q 048207 114 SEMAPPK-------CRGAFNIGFQVCVATGILSANLLNYGTQKIK 151 (466)
Q Consensus 114 ~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 151 (466)
+|..+.+ +.|...+.......+|..+|+.+++.+.+..
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9988622 2345678888888899999998888776543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.5e-08 Score=87.67 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=98.4
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhh----hhcchHHHHH-HHHHHHHHHhhhhhccch---------
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR----ALGGKVSILI-GGVAFLAGSALGGSAFNI--------- 88 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~l~~-~~~~~~i~~~~~~~~~~~--------- 88 (466)
.|+...++|++....+.+--...+...+.+++.|..+| ||||||.++. +.....++.++..++.++
T Consensus 55 ~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~ 134 (498)
T KOG0637|consen 55 LTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNER 134 (498)
T ss_pred ccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc
Confidence 35556778889998898888888999999999999999 4898886655 556667777777776543
Q ss_pred --------hHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCc-hhhHHHHHHHHHHHHHHHHhhhh
Q 048207 89 --------YMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGA-FNIGFQVCVATGILSANLLNYGT 147 (466)
Q Consensus 89 --------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~~~~~~ 147 (466)
..++++--+.=++.-.....+.+++.|.+.++++.+ +++++....++|..+|..++.+.
T Consensus 135 ~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 135 KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 344445555556666788889999999998777766 99999999999999999887643
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=87.17 Aligned_cols=169 Identities=12% Similarity=0.084 Sum_probs=121.9
Q ss_pred HHHhcccchhHHhhHHHHH-hhhC----CCcchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCeeeehhhhHHHHHHHHH
Q 048207 248 FFQQVTGVNIISFYAPVLF-RTIK----LSENTSLLMSALVTGGIGTVSAILPMILADK-LGRKVLFLLGGIQMLVSQVM 321 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~ 321 (466)
-+..-..+|.+..-+..|+ .+.+ ++++++. .+...+....-+..+++||++|| +|+|+.+..+.++..++.++
T Consensus 30 E~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~-~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~ 108 (498)
T COG3104 30 ELWERFSYYGMRAILILYLYYQLGDGLGFDETHAT-GLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLV 108 (498)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 3333334555555555554 3445 8888888 56666666666788899999999 79999999999999999998
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcccccccccccccccccc--chhhhhHHHHHHHHHHHHHHHHHHH
Q 048207 322 IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLE--IRSAGQSITVAVGLLFTSLVAQTFL 399 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~ 399 (466)
+.... ........+.+.+...+.+..= +....+..|.+|++ +|..++++..+..++|+.+.|.+.+
T Consensus 109 L~~~~-----------~~~~~gl~i~L~~I~iG~Gl~K-~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~ 176 (498)
T COG3104 109 LAISS-----------VSGPGGLYIGLALIIVGTGLFK-PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITG 176 (498)
T ss_pred Hhccc-----------cccccHHHHHHHHHHhcccccc-ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHH
Confidence 87641 0123334444444445554443 44466668998864 4777888888899999999999999
Q ss_pred HHHhhcccceehhhHHHHHHHHHhhheecc
Q 048207 400 AMLCHFKAGVFFFFGGWLTVMTTFVHFFLP 429 (466)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (466)
++.++.++...+..+++....+++.+...+
T Consensus 177 ~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 177 LLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999988888888877777777666554
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-07 Score=83.01 Aligned_cols=127 Identities=16% Similarity=0.114 Sum_probs=96.9
Q ss_pred hhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchh----HHHHHHHHhhhhhhhhhhhhhHHHHhcCCC
Q 048207 44 LYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIY----MLIFGRLLLGVGIDFGNQSVPLYLSEMAPP 119 (466)
Q Consensus 44 ~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~----~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 119 (466)
..+.-.-|.++.+++.||+|||+.+.++.+++++..++.....+-. +++.+|++ .++.+.+.++|..|.+|.
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPT 465 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPT 465 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccch
Confidence 3566677899999999999999999999999999999887764433 34445554 444566788899999999
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccC
Q 048207 120 KCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179 (466)
Q Consensus 120 ~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 179 (466)
+-|+...|......-+|.++.|+++ ...+.. --.+..+.+..+++..+...++|-
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA-~~~e~s----~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIA-MRAELS----TSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHH-HHhccc----eeehHHHHHHHHHHHHHHheeeee
Confidence 9999999999999999999999998 332221 224555556666666666666663
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-07 Score=86.10 Aligned_cols=152 Identities=14% Similarity=0.037 Sum_probs=108.6
Q ss_pred hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 048207 267 RTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILV 346 (466)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
++.+...++.+ ...+.+.++.+++.++++.+.||++..+.+... .++..++.+... ..++.+..++
T Consensus 74 edl~~~~~~l~-~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~----~~~w~~~~~~~~---------~~~s~~~~ia 139 (495)
T KOG2533|consen 74 EDLKLVGNQLG-VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVS----GILWGLFGFLTA---------AVHSFPGLIA 139 (495)
T ss_pred cccchhhhhhh-hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHH----HHHHHHHHHHHH---------HHhhhHHHHH
Confidence 44556666677 888999999999999999999999944444433 333333332211 0144566677
Q ss_pred HHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHh------hcccceehh-hHHHHHH
Q 048207 347 LICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLC------HFKAGVFFF-FGGWLTV 419 (466)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~ 419 (466)
.-++.+..-+.++++. ..+++..+.++.|+..+|+.+....+|+.+++.+...+.+ ..||...++ -+++.++
T Consensus 140 lr~llGl~es~~wP~~-~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~ 218 (495)
T KOG2533|consen 140 LRFLLGLFESGGWPGV-VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLV 218 (495)
T ss_pred HHHHHHHHhcccchHH-HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHH
Confidence 7778888888888877 4555899999999999999999999999999999888653 234655554 4555566
Q ss_pred HHHhhheecccCCC
Q 048207 420 MTTFVHFFLPETKN 433 (466)
Q Consensus 420 ~~~~~~~~~~~~~~ 433 (466)
.++++++++|+...
T Consensus 219 ~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 219 LGIVVFFFLPDNPS 232 (495)
T ss_pred HHheEEEEecCChh
Confidence 66677788886554
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.9e-07 Score=78.55 Aligned_cols=153 Identities=14% Similarity=0.033 Sum_probs=122.8
Q ss_pred ccCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhh-cchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHh
Q 048207 20 MREDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRAL-GGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLL 98 (466)
Q Consensus 20 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 98 (466)
....|.|-.|-|+|..+.|++.+...+.....++....+++|. .+|+..+....++.++...+.+.+.-..+.- -++.
T Consensus 228 ~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~ll 306 (395)
T COG2807 228 IGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLL 306 (395)
T ss_pred HHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHH
Confidence 3456888899999999999999999999999999999999964 6788888888888888888888776544444 5999
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcc-cCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhh
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKC-RGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSL 175 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 175 (466)
|+|.|..++.+..++.+..++.+ -++..++.+....+=...||.+.+++.|..+ +|+......+...+...+.-+
T Consensus 307 G~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 307 GLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred hCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998886444 4556666666666667778999999988765 699888877776666555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.3e-07 Score=85.25 Aligned_cols=116 Identities=14% Similarity=0.077 Sum_probs=102.9
Q ss_pred chhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc--chhHHHHHHHHhhhhhhhhhhhhhHH
Q 048207 35 QLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF--NIYMLIFGRLLLGVGIDFGNQSVPLY 112 (466)
Q Consensus 35 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~ 112 (466)
...+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5678888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred HHhcCCC-------cccCchhhHHHHHHHHHHHHHHHHhhhhccc
Q 048207 113 LSEMAPP-------KCRGAFNIGFQVCVATGILSANLLNYGTQKI 150 (466)
Q Consensus 113 i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 150 (466)
++|..+. ++.|...+.......+|..+++.+.+.+.+.
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999873 2347788888888888988888887766543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-06 Score=77.18 Aligned_cols=137 Identities=15% Similarity=0.042 Sum_probs=105.3
Q ss_pred hhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 048207 256 NIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG 335 (466)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
.......|.+.+.++.+..+++ ........+..+.++..+++.+|+|+|+-++.+..+++++..++.-..
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~-liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa--------- 99 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEAS-LIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA--------- 99 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHH-HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh---------
Confidence 3444566777788899999998 888889999999999999999999999999999999999998886443
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 048207 336 FSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCH 404 (466)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
........+...++.+.+.+..-... ..+++.+.|++..+.-+.+.+.+..+|..++|.+.+.+..+
T Consensus 100 -~~~~y~~FL~~lFila~Gi~~Letaa-Np~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 100 -SSKSYGFFLVALFILASGIGLLETAA-NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred -hhhhHHHHHHHHHHHHhhhHHHHhcc-chHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 11223334444444444444433333 45557888887778889999999999999999999998873
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.9e-07 Score=62.89 Aligned_cols=70 Identities=13% Similarity=0.080 Sum_probs=66.2
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHH
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLI 92 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~ 92 (466)
.|.|++|.++|.++.|++.+..++||.+|++...++.++..+++.+..+++...+..+.+++.++.+.+.
T Consensus 15 LP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 15 LPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 5899999999999999999999999999999999999999999999999999999999999999887653
|
Note that many members are hypothetical proteins. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.4e-07 Score=83.44 Aligned_cols=147 Identities=13% Similarity=0.048 Sum_probs=127.7
Q ss_pred ccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhh
Q 048207 28 DYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQ 107 (466)
Q Consensus 28 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 107 (466)
||.+-.+...|........|-.+.-++.+++..|+|+-+++.+++.+..+=.+..+..+|.|+.+-..+++|+..+..+.
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWa 478 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWA 478 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHH
Confidence 45556777778888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcCCCcccCchhhHHHHH-HHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc
Q 048207 108 SVPLYLSEMAPPKCRGAFNIGFQVC-VATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL 177 (466)
Q Consensus 108 ~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 177 (466)
...+|+++..||+-|..+.++.+.. .++|--+|.++|+.+... ++=|..|...++.+++.++....+
T Consensus 479 a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~---fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 479 AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER---FGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---ehhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887654 577888899999888875 447888888888777765554443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.4e-06 Score=65.62 Aligned_cols=109 Identities=22% Similarity=0.199 Sum_probs=93.9
Q ss_pred HHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHHHHhcC
Q 048207 38 TSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMA 117 (466)
Q Consensus 38 g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 117 (466)
-.-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..++....++.+..
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 344566777788888999999999999999999999988655544 5678889999999999999999999999999999
Q ss_pred CCcccCchhhHHHHHHHHHHHHHHHHhhhh
Q 048207 118 PPKCRGAFNIGFQVCVATGILSANLLNYGT 147 (466)
Q Consensus 118 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 147 (466)
++++|++-.+++-.....+.++|.++...+
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888888888776554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=81.24 Aligned_cols=123 Identities=13% Similarity=0.053 Sum_probs=84.6
Q ss_pred HHHhh--hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCC-eeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 264 VLFRT--IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGR-KVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 264 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
.|+++ .+-+.+..+ +......++..++++..|+...|.++ |+.++.+.+++.++.++.....+. +...
T Consensus 59 pYl~~lD~~A~~~ffG-~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~--------~~~~ 129 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFG-LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV--------PNGV 129 (488)
T ss_pred hhhhhcCCCCCcchhh-HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc--------ccch
Confidence 45555 566666666 88888999999999999999999886 889999999999999888554322 2223
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQT 397 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 397 (466)
.+..++.-++. +.+.+.....-.|.++..-.+.|.++++..+....++..+||.+
T Consensus 130 ~y~mL~~R~l~--Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~ 184 (488)
T KOG2325|consen 130 KYLMLVARILT--GVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI 184 (488)
T ss_pred HHHHHHHHHHc--CcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence 44444443433 34444445557787887777788888877776555555454443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.7e-06 Score=79.15 Aligned_cols=142 Identities=14% Similarity=0.085 Sum_probs=93.1
Q ss_pred chhHHhhHHHHH-hhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhh----cCCeeeehh-hhHHHHHHHHHHHHHHHh
Q 048207 255 VNIISFYAPVLF-RTIKLSENTSLLMSALVTGGIGTVSAILPMILADK----LGRKVLFLL-GGIQMLVSQVMIGSIMAA 328 (466)
Q Consensus 255 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 328 (466)
+.....|+..|+ +..|.++...+ .+..+.-+...+.-++.|+++|| +||||..+. +.+.++++..++....
T Consensus 25 ~~~~~~~l~~fyt~~~Gl~~~~~g-~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p-- 101 (460)
T PRK11462 25 FDNVMLYMMFFYTDIFGIPAGFVG-TMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP-- 101 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHH-HHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC--
Confidence 344455555554 56799998888 88888889999999999999997 577776654 4455555544433221
Q ss_pred hcCCCCCccchhhHHHHHHHHHHHHhhhcccccccccccccccc-ccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048207 329 QLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFP-LEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF 405 (466)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
. ........+..+..+++..++.....|. ..+..|+.+ +++|++..+.....+.+|+.+++.+...+....
T Consensus 102 ---~--~s~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~ 173 (460)
T PRK11462 102 ---D--LSMNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI 173 (460)
T ss_pred ---C--CCcchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0011112334444455566666666665 455567765 688999999999998888877777766655544
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.5e-07 Score=81.83 Aligned_cols=112 Identities=17% Similarity=0.122 Sum_probs=75.5
Q ss_pred CCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHH
Q 048207 271 LSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICV 350 (466)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (466)
+++...+ .......++.++|+++.|++.||+|||+++....+++.++.++.+.... ...+....+++...=.+
T Consensus 81 ~ps~i~~-~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~------~~~~~~~m~~L~~~R~~ 153 (538)
T KOG0252|consen 81 YPSGVLA-LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG------TTSPLGVMMTLCFFRFL 153 (538)
T ss_pred CCchHHH-HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC------CCCCcchhhHHHHHHHH
Confidence 3344444 7788888999999999999999999999999888888888875544321 11111223333444444
Q ss_pred HHHhhhccccccccccccccccccchhhhhHHHHHHHHHH
Q 048207 351 YKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLF 390 (466)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 390 (466)
.+++.+.-+ |+..++++|..-.+.||+-.+.+...+..|
T Consensus 154 LGiGIGGDY-PlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 154 LGIGIGGDY-PLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred hhccccCCC-cchHHHhhhhhhhccccceeEEEEEecchh
Confidence 555554443 455777899999999998877655544443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-05 Score=71.20 Aligned_cols=154 Identities=15% Similarity=0.064 Sum_probs=127.7
Q ss_pred cCCccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhh-hhcchHHHHHHHHHHHHHHhhhh---hccchhHHHHHHH
Q 048207 21 REDTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR-ALGGKVSILIGGVAFLAGSALGG---SAFNIYMLIFGRL 96 (466)
Q Consensus 21 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r~ 96 (466)
..+|.=.|-||+|..|...+......|..++....|++.. |.++|+.-.+++....++..+.. ...+.+.+...-+
T Consensus 230 iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~ 309 (403)
T PF03209_consen 230 ILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVF 309 (403)
T ss_pred HcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3466678889999999999999999999999999999888 67888888888888777776644 4478899999999
Q ss_pred HhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC-------CCcchHHHHHhhhHHHHH
Q 048207 97 LLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK-------GGWGWKISLAMAAAPASI 169 (466)
Q Consensus 97 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-------~~~~wr~~f~~~~~~~~~ 169 (466)
+.|++.|.......+...|..++++.|..+|.+.....+...++..+++.+.|.. ...+|-.+|.+-++..++
T Consensus 310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~ 389 (403)
T PF03209_consen 310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA 389 (403)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988876631 123566777777666555
Q ss_pred HHHHh
Q 048207 170 LTIGS 174 (466)
Q Consensus 170 ~~~~~ 174 (466)
.+.+.
T Consensus 390 a~~ll 394 (403)
T PF03209_consen 390 ALVLL 394 (403)
T ss_pred HHHHH
Confidence 44433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.5e-05 Score=73.01 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=97.2
Q ss_pred ccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhcc--chhHHHHHHHHhhhhhhhhhh
Q 048207 30 CKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAF--NIYMLIFGRLLLGVGIDFGNQ 107 (466)
Q Consensus 30 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 107 (466)
+|-++.+..+.......+..++.+++.++++|+|+|+++.++.++..++.++..+.+ +.+.+++..++.++|.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 344566677778888888888899999999999999999999999999999988876 788899999999999999999
Q ss_pred hhhHHHHhcCCCc-------ccCchhhHHHHHHHHHHHHHHHHhhhhcc
Q 048207 108 SVPLYLSEMAPPK-------CRGAFNIGFQVCVATGILSANLLNYGTQK 149 (466)
Q Consensus 108 ~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~ 149 (466)
...++++|..+-+ .-|...+......=+|..++..+.+++..
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998877522 22556666666666787777766555543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.3e-05 Score=67.42 Aligned_cols=116 Identities=13% Similarity=0.023 Sum_probs=72.9
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhh-----hhcchHHHHH-HHHHHHHHHhhhhh-----------ccch
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTR-----ALGGKVSILI-GGVAFLAGSALGGS-----------AFNI 88 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d-----r~Grr~~l~~-~~~~~~i~~~~~~~-----------~~~~ 88 (466)
+-+.=|+|-++.+...-++. -.---++|.++.| |+||||..+. +..+.+....+.+. .++.
T Consensus 56 lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v 133 (510)
T KOG3574|consen 56 LLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNV 133 (510)
T ss_pred HhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcch
Confidence 33344556655554322211 1123578899999 9999986533 33333333333322 2344
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHH
Q 048207 89 YMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLL 143 (466)
Q Consensus 89 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 143 (466)
..+....++.-+..+......-.+.-.+..+++-|.+......+...|.+++..+
T Consensus 134 ~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 134 VALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 4444455666677777778888888888888999999888888888887777655
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00055 Score=66.81 Aligned_cols=147 Identities=16% Similarity=0.080 Sum_probs=112.6
Q ss_pred cccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh-hcchHHHHHHHHHHHHHHhhhhhccc----------------
Q 048207 25 KVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRA-LGGKVSILIGGVAFLAGSALGGSAFN---------------- 87 (466)
Q Consensus 25 ~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~---------------- 87 (466)
.+.+++|.+...+.-..+.+.-......+..++++|- +||-+++.++.++..++..+..++..
T Consensus 63 ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~ 142 (571)
T KOG1237|consen 63 YLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGN 142 (571)
T ss_pred HHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCC
Confidence 3566777788888888888888888999999999996 58999999998888888655443211
Q ss_pred ---------hhHHHHHHHHhhhhhhhhhhhhhHHHHhcCC---Ccc---cCchhhHHHHHHHHHHHHHHHHhhhhcccCC
Q 048207 88 ---------IYMLIFGRLLLGVGIDFGNQSVPLYLSEMAP---PKC---RGAFNIGFQVCVATGILSANLLNYGTQKIKG 152 (466)
Q Consensus 88 ---------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 152 (466)
...+..+.-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|..++..+-.++.+.
T Consensus 143 ~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~-- 220 (571)
T KOG1237|consen 143 VCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN-- 220 (571)
T ss_pred cccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc--
Confidence 1356667778888999999999999999998 322 23678888999999999998887777654
Q ss_pred CcchHHHHHhhhHHHHHHHHHh
Q 048207 153 GWGWKISLAMAAAPASILTIGS 174 (466)
Q Consensus 153 ~~~wr~~f~~~~~~~~~~~~~~ 174 (466)
.+|.+-|.+..+..++.++++
T Consensus 221 -~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 221 -VGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred -ccceeeccHHHHHHHHHHHHH
Confidence 459998888776665554443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00018 Score=68.02 Aligned_cols=91 Identities=10% Similarity=0.035 Sum_probs=51.4
Q ss_pred chhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCC---cchH--HHHH
Q 048207 87 NIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGG---WGWK--ISLA 161 (466)
Q Consensus 87 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~---~~wr--~~f~ 161 (466)
.++..++.-++.|++.+........+.+ .+|++ .+..+..+.+++.+++..+--......++ ..++ ..|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 4667777888899999988888888777 45654 34444555555555544432221111111 1122 3344
Q ss_pred hhhHHHHHHHHHhhcccCChh
Q 048207 162 MAAAPASILTIGSLFLPETPN 182 (466)
Q Consensus 162 ~~~~~~~~~~~~~~~~~es~~ 182 (466)
+..++.+++++....++..|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 455555566666666776664
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.1e-05 Score=74.41 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=95.0
Q ss_pred HHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcccccccc
Q 048207 285 GGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGW 364 (466)
Q Consensus 285 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (466)
++..++.++..|.++||+|||..+......+.+..+.+.+.. ++..+..- ...++.. ......
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------------~~~~~~~~-l~g~~~~-~~s~~~ 134 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------------YWFFLLLG-LSGGFSA-IFSVGF 134 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------------HHHhhhcc-cccchhh-hhhhhh
Confidence 677888999999999999999999888777777666655431 22222111 1122222 223336
Q ss_pred ccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHH-HHHHhhheecccCCCCCH
Q 048207 365 LVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLT-VMTTFVHFFLPETKNVPI 436 (466)
Q Consensus 365 ~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 436 (466)
.+.+|....+.|....|+.+.....+..++|...+.+.+..+....+..+.... +.......++||+..++.
T Consensus 135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 777899999999999999999999999999999999999888655555444444 444456677777655443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.3e-05 Score=71.52 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHhhhhhc---cch------hHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcc---cCchhhHHHHHH
Q 048207 66 VSILIGGVAFLAGSALGGSA---FNI------YMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKC---RGAFNIGFQVCV 133 (466)
Q Consensus 66 ~~l~~~~~~~~i~~~~~~~~---~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~ 133 (466)
|++.++.+++.+|.++..++ ++. +.+.++-.+.++|.|+.-|...++.+|.+++++ |.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888899998885443 222 678999999999999999999999999998663 556788899999
Q ss_pred HHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc
Q 048207 134 ATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF 176 (466)
Q Consensus 134 ~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 176 (466)
++|..++..+.+++.+. ++|.+.|.+.++..++.++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~---~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN---YGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHC---S-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccc---cchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999998888864 56999999998887776665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.14 E-value=4e-05 Score=68.48 Aligned_cols=158 Identities=16% Similarity=0.049 Sum_probs=92.7
Q ss_pred hHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 048207 261 YAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGY 340 (466)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
|.-...+++|++..+.. .++........+...+.|.+.||+|||+.-+..+++..++.+.-- .+.
T Consensus 56 Y~Y~LY~~yg~~~~qIa-~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~--------------~~~ 120 (354)
T PF05631_consen 56 YLYALYESYGFSEHQIA-ILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH--------------SSN 120 (354)
T ss_pred hhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh--------------ccc
Confidence 33344578899999988 777788888888889999999999999987777777766665322 133
Q ss_pred hHHHHHHHHHHHHhhhcccccccccccccc----ccccchhhhhHHHHHH-HHHHHHHHHHHHHHHHhhccc--ceehhh
Q 048207 341 AYLILVLICVYKAGFGFSWGPLGWLVPSEI----FPLEIRSAGQSITVAV-GLLFTSLVAQTFLAMLCHFKA--GVFFFF 413 (466)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 413 (466)
.+..++.-++.+...+..+.+.-.-++.|. +|++..+...+...+. +.+.....+.+...+.+..+. ..++..
T Consensus 121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~ 200 (354)
T PF05631_consen 121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDA 200 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHH
Confidence 444444545555555554444322222454 4555555555544433 333344444455555665553 445555
Q ss_pred HHHHHHHHHhh-heecccCCC
Q 048207 414 GGWLTVMTTFV-HFFLPETKN 433 (466)
Q Consensus 414 ~~~~~~~~~~~-~~~~~~~~~ 433 (466)
++.+.+++.++ ....+|..+
T Consensus 201 a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 201 AIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHHHHHhcccccCC
Confidence 55554444443 333445443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.9e-05 Score=69.10 Aligned_cols=50 Identities=10% Similarity=-0.091 Sum_probs=37.0
Q ss_pred hhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 048207 354 GFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCH 404 (466)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
.....+.++ .++-+.+.+|..-|+.+.+.|++.++|+.--..+.-++.|.
T Consensus 418 ~stvmFVai-~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 418 MSTVMFVAI-MAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHH-HHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 333333444 34447888999999999999999999988777777776664
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0051 Score=58.85 Aligned_cols=117 Identities=13% Similarity=0.030 Sum_probs=81.8
Q ss_pred CcchhHHHHHhhhH-HHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc---------cc---------------
Q 048207 33 DSQLLTSLTSSLYI-TGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA---------FN--------------- 87 (466)
Q Consensus 33 s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---------~~--------------- 87 (466)
+++.+..+-....+ ...+...+..+++++++|.+++-+....+.....+.++. ++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 55556666554444 445667889999999999999887777666666665553 11
Q ss_pred -------hhHHHHHHHHhhhhhhhhhh-hhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcc
Q 048207 88 -------IYMLIFGRLLLGVGIDFGNQ-SVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQK 149 (466)
Q Consensus 88 -------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~ 149 (466)
.|.+.+..+..-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.+++..+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13333333333333333333 357788999999999999999999999999998888777766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0059 Score=56.97 Aligned_cols=117 Identities=11% Similarity=-0.013 Sum_probs=85.3
Q ss_pred CcchhHHHHHhhhH-HHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc---------cc---------------
Q 048207 33 DSQLLTSLTSSLYI-TGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA---------FN--------------- 87 (466)
Q Consensus 33 s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---------~~--------------- 87 (466)
++..+.++-+..-+ ...+..++.+++.+++.|.+++-+.+..+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 45666777777777 677889999999999999999988887777777777653 11
Q ss_pred --------hhHHHHHHHHhhhhhhhhhh-hhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcc
Q 048207 88 --------IYMLIFGRLLLGVGIDFGNQ-SVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQK 149 (466)
Q Consensus 88 --------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~ 149 (466)
.|...+...+.=+-...... .-.....|.+..+|-.|..+.++.+.+++..++..+...+.+
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 13333333333333333333 445567899998999999999999999999998888777766
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.7e-05 Score=52.78 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=43.7
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHH
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAF 75 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 75 (466)
-++.|+|+.|.|.+.++..+...++++++|.++||+|+++.++....+.
T Consensus 27 ~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 27 LKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999887765543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.8e-05 Score=52.26 Aligned_cols=65 Identities=22% Similarity=0.358 Sum_probs=54.6
Q ss_pred HHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhH
Q 048207 248 FFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGI 313 (466)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 313 (466)
.+..++......-|.|.++++.|++..+.+ .+..+..+..+++.++.|.++||+++++.......
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iG-il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIG-ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 334444567778889999999999999999 89999999999999999999999999987765443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0026 Score=54.25 Aligned_cols=57 Identities=12% Similarity=-0.011 Sum_probs=37.4
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHhhhh---cccCCCcchHHHHHhhhHHHHHHHHHhhcc
Q 048207 120 KCRGAFNIGFQVCVATGILSANLLNYGT---QKIKGGWGWKISLAMAAAPASILTIGSLFL 177 (466)
Q Consensus 120 ~~r~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 177 (466)
++|+..+.+...+.++|.++....-..- .+.. ...|++++.+.+++.++.++....+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~-~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIAL-TNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888888999987755432111 1111 1359999999888777766555444
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00092 Score=66.58 Aligned_cols=133 Identities=15% Similarity=0.003 Sum_probs=86.9
Q ss_pred HhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 048207 266 FRTIKLSENTSLLMSALVTGGIGTVSAILPMILADK-LGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLI 344 (466)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (466)
.+..+++...+. .....+....-+..+++|++.|+ +|+++.+.++.++..++..++.+.... .. .........
T Consensus 15 ~~~lg~~~~~A~-~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~---~~--~~~~~~~~~ 88 (654)
T TIGR00926 15 LNFLGFSESTST-VLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIP---SS--GHPLHDLLD 88 (654)
T ss_pred HHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCc---cc--ccchHHHHH
Confidence 345788877777 55555556666777888999996 799999999888888887776653210 00 001112223
Q ss_pred HHHHHHHHHhhhcccccccccccccccccc---chhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048207 345 LVLICVYKAGFGFSWGPLGWLVPSEIFPLE---IRSAGQSITVAVGLLFTSLVAQTFLAMLCHF 405 (466)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
+..+.+...+.+..-+.+ .....|.++++ .+...+.+.....++|+.+++.+.+.+.+..
T Consensus 89 l~gLaLia~G~GgiKp~v-saf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCV-SAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred HHHHHHHHhhccccccCc-hhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444445554444444 44446777643 3667788888999999999999999887553
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.015 Score=53.48 Aligned_cols=92 Identities=15% Similarity=-0.003 Sum_probs=48.1
Q ss_pred chhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCC--cchHHHHHhhh
Q 048207 87 NIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGG--WGWKISLAMAA 164 (466)
Q Consensus 87 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~--~~wr~~f~~~~ 164 (466)
.++..++.-.+.+.+.|..........++ +|++.-+-.+ ++.+++..+...+.-......++ .+=...|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm----~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM----SGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH----hcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 45667777788888888877777776665 4555433332 23333333332221111111111 11223455555
Q ss_pred HHHHHHHHHhhcccCChhh
Q 048207 165 APASILTIGSLFLPETPNS 183 (466)
Q Consensus 165 ~~~~~~~~~~~~~~es~~~ 183 (466)
+..+++++....+|..|-.
T Consensus 191 ~~~llC~i~y~~l~~lpf~ 209 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPFV 209 (406)
T ss_pred HHHHHHHHHHHHhhcchHH
Confidence 6666666666667776643
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.44 E-value=2.6e-05 Score=75.76 Aligned_cols=155 Identities=12% Similarity=-0.031 Sum_probs=0.9
Q ss_pred HHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHH
Q 048207 246 IPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSI 325 (466)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 325 (466)
+..+.+.............+-++++++..+++ .+.+.+-++.++..++..++.+|-.|-|.+-.+.++++++.+++.+.
T Consensus 10 ~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G-~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 10 LLGLFQMMVSGYVNSSLTTIERRFGLSSSQSG-LISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence 33333433344444445566678999999999 99999999999999999999999888888888999999888888765
Q ss_pred HHhhcCC----CC-----------------------------Cccchhh----HHHHHHHHHHHHhhhcccccccccccc
Q 048207 326 MAAQLGD----HG-----------------------------GFSIGYA----YLILVLICVYKAGFGFSWGPLGWLVPS 368 (466)
Q Consensus 326 ~~~~~~~----~~-----------------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (466)
.+..-.. .. ....... +++++..++.+.+ +....++..+|+-
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG-~~pl~tLG~tYiD 167 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIG-ATPLYTLGITYID 167 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhcc-ccCCccceeeeec
Confidence 4332110 00 0001111 1222222222222 2223455678889
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048207 369 EIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAML 402 (466)
Q Consensus 369 ~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 402 (466)
|..+++..+...|+......+|.++|=.+.+...
T Consensus 168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ----------------------------------
T ss_pred cccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 9999999999999998888887766655555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0022 Score=50.86 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcc
Q 048207 279 MSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFS 358 (466)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (466)
.-..+......+.+++.+.+.+++|.|+.+.++.+...+-...... ...+..+....+.+.+.+..
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~--------------~~~~~l~~~s~l~G~~~a~l 106 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY--------------PNSYTLYPASALLGFGAALL 106 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHhhhhHHh
Confidence 4455556667778888899999999999999887777755544332 23566677777888888877
Q ss_pred ccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 048207 359 WGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAM 401 (466)
Q Consensus 359 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (466)
|.... .+..+...++.+++..++...+...+..+|..+.-.+
T Consensus 107 W~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 107 WTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77763 4456888888999999988888887666666554433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0017 Score=61.89 Aligned_cols=150 Identities=10% Similarity=0.025 Sum_probs=114.4
Q ss_pred CCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhh----------ccchhHHHHHHHHhhhh
Q 048207 32 FDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS----------AFNIYMLIFGRLLLGVG 101 (466)
Q Consensus 32 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----------~~~~~~l~~~r~l~G~~ 101 (466)
.|+...|.+..+..++..++..++....-+..-|+++..+.++..+..+.... .++.+..+.--++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 89999999998999999999999998888888899998888887777664321 13334455566777777
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCC-----cchHHHHHhhhHHHHHHHHHhhc
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGG-----WGWKISLAMAAAPASILTIGSLF 176 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----~~wr~~f~~~~~~~~~~~~~~~~ 176 (466)
.+..+.....+++|.+|+...|...++..+..++|..++..++..+.+..+. .+-.+..++..+..++.+.+..+
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l 411 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL 411 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 7888888889999999999999999999999999999999998888765431 11224445555555555565666
Q ss_pred ccCCh
Q 048207 177 LPETP 181 (466)
Q Consensus 177 ~~es~ 181 (466)
+|+..
T Consensus 412 Lp~~~ 416 (433)
T PF03092_consen 412 LPPQK 416 (433)
T ss_pred cCCCc
Confidence 77644
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0046 Score=61.14 Aligned_cols=196 Identities=14% Similarity=0.032 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHH
Q 048207 239 QLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVS 318 (466)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 318 (466)
.++.+..+..+.+......+......+=++++++..+.+ ++...+-++..+...+..+...|..|-+.+-++.++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG-~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSG-LIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcce-eEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 344445555555443333333344444467888888888 8888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC-------------CC--------------------CCc-----cchhhHHHHHHHHHHHHhhhcccc
Q 048207 319 QVMIGSIMAAQLG-------------DH--------------------GGF-----SIGYAYLILVLICVYKAGFGFSWG 360 (466)
Q Consensus 319 ~~~~~~~~~~~~~-------------~~--------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 360 (466)
.++..+..+..-. .+ ++. .+...+..++...+..+....-..
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 8888766332100 00 001 011123233222222222233344
Q ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc------------------c-cceehhhHHHHHHHH
Q 048207 361 PLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF------------------K-AGVFFFFGGWLTVMT 421 (466)
Q Consensus 361 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~ 421 (466)
++...|+.|...++......|+..++..+|-++|-.+.+.....+ | |+.-+++.+.+.+..
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 566788888888888888999999888887766665555544321 1 222334444555555
Q ss_pred HhhheecccCCCCC
Q 048207 422 TFVHFFLPETKNVP 435 (466)
Q Consensus 422 ~~~~~~~~~~~~~~ 435 (466)
.+.++++|+..++.
T Consensus 336 a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 336 AVPLFFFPKELPKS 349 (735)
T ss_pred HHHHHhCcccCccc
Confidence 56666777655544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0053 Score=56.75 Aligned_cols=157 Identities=12% Similarity=0.007 Sum_probs=92.3
Q ss_pred hHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccch
Q 048207 261 YAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 261 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
..|++.+. .|++.++..--+.-...=..++..++...+.|.++.|.+++++.+...+...++.+. .
T Consensus 26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-------------~ 92 (412)
T PF01770_consen 26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-------------T 92 (412)
T ss_pred chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------------C
Confidence 33444443 688777655333334444556666778889999999999998888777777666554 2
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc--cceehhhHHHH
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK--AGVFFFFGGWL 417 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 417 (466)
.....-+.-++++...+.-..- +.++-...|+++--++.+.......+|..++..+...+....+ +.....+....
T Consensus 93 sv~~mq~~q~~yg~~~a~evay--~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~ 170 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAAEVAY--YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLAS 170 (412)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH--HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2333444444555444432222 2333355677777778888888777777777766655554333 22222333444
Q ss_pred HHHHHhhheecccCC
Q 048207 418 TVMTTFVHFFLPETK 432 (466)
Q Consensus 418 ~~~~~~~~~~~~~~~ 432 (466)
..++.+..+++|..+
T Consensus 171 ~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 171 VSLALLIALFLPMPK 185 (412)
T ss_pred HHHHHHHHHHcCCCC
Confidence 445555556666543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0027 Score=58.49 Aligned_cols=125 Identities=13% Similarity=-0.035 Sum_probs=80.6
Q ss_pred CcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhH--HHHHHHH
Q 048207 272 SENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAY--LILVLIC 349 (466)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 349 (466)
+...+. +...++.+..++..+.+-|+.||.|-|....++.....++..+=.+..... -++..+ .......
T Consensus 77 s~~~~~-wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~-------v~~~f~~~l~~~Gq~ 148 (480)
T KOG2563|consen 77 SSSAAD-WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPF-------VPPLFRRPLTHTGQS 148 (480)
T ss_pred chHHHH-HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcc-------ccccchhhhhHHhHH
Confidence 555555 888899999999999999999999999999988888888776654432100 001122 2222222
Q ss_pred HHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048207 350 VYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF 405 (466)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
+..... .....++.-+..--+|+++|+++..+..+...+|.+++..+-..+..+.
T Consensus 149 iaa~Aq-~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 149 IAAAAQ-PFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHhh-hHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 222221 1122222333345589999999999998888888777766655555443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00077 Score=61.96 Aligned_cols=158 Identities=15% Similarity=0.050 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhh----cCCeeeehhh-h
Q 048207 238 PQLVMAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADK----LGRKVLFLLG-G 312 (466)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~-~ 312 (466)
++.+....+....+++ +..-..|.+.|.++.|.+..... ......-+.+++.+++.|..+|| +||||..+.. .
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S-~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s 109 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSS-IIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGS 109 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCccccc-ccccccccccceecccccccccccccccccccchHHHhh
Confidence 3344444444554543 45566778888899999988877 66677778888999999999997 7888876654 4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccc----hhhHHHHHHHHHHHHhhhccccccccccccccccccchhh-hhHHHHHHH
Q 048207 313 IQMLVSQVMIGSIMAAQLGDHGGFSI----GYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSA-GQSITVAVG 387 (466)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~-~~g~~~~~~ 387 (466)
....++++++.+.......-.++... ......++.+-+.-........|. -.+..|+...+.+.+ +++....+.
T Consensus 110 ~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~ 188 (498)
T KOG0637|consen 110 LLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFM 188 (498)
T ss_pred HHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHH
Confidence 44555555555554433221111111 111222233333333443445555 566678887777777 888888888
Q ss_pred HHHHHHHHHHH
Q 048207 388 LLFTSLVAQTF 398 (466)
Q Consensus 388 ~~~~~~~~~~~ 398 (466)
.+|+.++-...
T Consensus 189 avGnvLGY~~g 199 (498)
T KOG0637|consen 189 AVGNVLGYALG 199 (498)
T ss_pred Hhcceeeeecc
Confidence 88776554333
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.023 Score=54.22 Aligned_cols=125 Identities=9% Similarity=-0.057 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHh-hhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCC----------ccch--------
Q 048207 279 MSALVTGGIGTVS-AILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG----------FSIG-------- 339 (466)
Q Consensus 279 ~~~~~~~~~~~~~-~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-------- 339 (466)
++.+...+...+. .++.+++++|++|++..............++.+.........++ .+.+
T Consensus 47 fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~ 126 (472)
T TIGR00769 47 FLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAIL 126 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHH
Confidence 4444444444444 78889999999999998887777777777766654321111000 0000
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLC 403 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
..|.................+-+.|.+++|.+..++..+-.++....+++|..+++.+...+.+
T Consensus 127 ~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 127 RIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0121112222222222222233558888999999999999999999999999999988887763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00018 Score=65.17 Aligned_cols=116 Identities=7% Similarity=-0.109 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcc
Q 048207 279 MSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFS 358 (466)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (466)
..+..+.++..+|+.+..+..-+..+++.+.+..+.=.+...++............+....+.+..++..++++...+ .
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG-y 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG-Y 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc-h
Confidence 356678999999999888743221133333332222222222222211100000000011223333444444443332 2
Q ss_pred ccccccccccccccccchhhhhHHHHHHHHHHHHHHH
Q 048207 359 WGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVA 395 (466)
Q Consensus 359 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~ 395 (466)
...+...+..+..+++.|..+-.+...+-.+|-.+|.
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs 301 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGS 301 (309)
T ss_dssp --HHHH-------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566667888878877776666555555544444
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.055 Score=51.02 Aligned_cols=157 Identities=10% Similarity=-0.075 Sum_probs=78.9
Q ss_pred chhHHhhHHHHHhhhCC-CcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC
Q 048207 255 VNIISFYAPVLFRTIKL-SENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333 (466)
Q Consensus 255 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
.-...+-.+.++.+..- +..... .....-.+..++.++..|.+.||..|.+....+.+..-++..+-...........
T Consensus 18 dR~w~Fa~~L~L~~i~p~sLl~~s-iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~ 96 (432)
T PF06963_consen 18 DRMWEFAVPLFLISIFPGSLLPVS-IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYP 96 (432)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445555666555432 322333 4555667777888888999999999988776665544333322222211111111
Q ss_pred CCc--cchhhHHHHHHHHHHHHhhhccccc----cccccccccc--cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048207 334 GGF--SIGYAYLILVLICVYKAGFGFSWGP----LGWLVPSEIF--PLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF 405 (466)
Q Consensus 334 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
... +............+.+......... +--=++..+. +++.....++...-+-.+...++|.+.|.+.+..
T Consensus 97 ~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~ 176 (432)
T PF06963_consen 97 SSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA 176 (432)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 000 0111111111111221111111111 1111111122 3455566777777788889999999999999877
Q ss_pred ccceehh
Q 048207 406 KAGVFFF 412 (466)
Q Consensus 406 ~~~~~~~ 412 (466)
+......
T Consensus 177 s~~~~~~ 183 (432)
T PF06963_consen 177 SPVIAAI 183 (432)
T ss_pred CHHHHHH
Confidence 7544333
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.097 Score=49.51 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=79.6
Q ss_pred HhhhHHHHHHHHhHHhhhh---hhcchHHHHHHHHHHHHHHhhhhhc------------------cchhHHHHHHHHhhh
Q 048207 42 SSLYITGILASLIASSVTR---ALGGKVSILIGGVAFLAGSALGGSA------------------FNIYMLIFGRLLLGV 100 (466)
Q Consensus 42 s~~~l~~~i~~~~~g~l~d---r~Grr~~l~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r~l~G~ 100 (466)
-...+|..+++.+.+.+++ ++||++.+.++..+..++.++.-.. +++...++.-++.|+
T Consensus 286 ~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~ 365 (461)
T KOG3098|consen 286 IGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF 365 (461)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh
Confidence 3344555566666777775 5899999999998888888876543 246677888899999
Q ss_pred hhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHh
Q 048207 101 GIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLN 144 (466)
Q Consensus 101 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 144 (466)
+-+......+.++.+.. +++|..+.++...-..++..++....
T Consensus 366 ~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 366 GDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999 57788888888888888777666553
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.095 Score=51.16 Aligned_cols=119 Identities=10% Similarity=-0.056 Sum_probs=73.5
Q ss_pred cccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHH-HHHHHH-HHHhhh----hhccch-hHHHHHHHHhhhh
Q 048207 29 YCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILI-GGVAFL-AGSALG----GSAFNI-YMLIFGRLLLGVG 101 (466)
Q Consensus 29 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~-i~~~~~----~~~~~~-~~l~~~r~l~G~~ 101 (466)
-+|-+..+.+.+.+++++|.++|+.+.+++.++--|+....- +..+.+ ++..+. ++...+ ..+...-++.|+.
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 123 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLL 123 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888999999999999999999988744333332211 111111 111111 111111 2233445667888
Q ss_pred hhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhc
Q 048207 102 IDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQ 148 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~ 148 (466)
.|+..|....+..+... ++-++..|-......+|.++|.++.+++.
T Consensus 124 ~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 124 IGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 88888887776665332 23456778888888888888888876654
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.018 Score=39.97 Aligned_cols=69 Identities=16% Similarity=-0.009 Sum_probs=59.5
Q ss_pred hhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHH
Q 048207 256 NIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSI 325 (466)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 325 (466)
+.++..+|...++.+++..+.+ ++.+...++.++|.+...++.++.++++.+..+.+...+....+.+.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag-~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAG-WLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888899999999999 99999999999999999999999888888888888888888777765
|
Note that many members are hypothetical proteins. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.025 Score=52.39 Aligned_cols=116 Identities=14% Similarity=0.017 Sum_probs=85.8
Q ss_pred ccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHH-----HHHHHHhhhhhccchhHHHHHHHHhhhhhhh
Q 048207 30 CKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGV-----AFLAGSALGGSAFNIYMLIFGRLLLGVGIDF 104 (466)
Q Consensus 30 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~-----~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~ 104 (466)
+.-..++..+...+|.+|-.++.--...+ |+ |++.+.+.+ +..+.....-+.++.|..++.-+..|+..|.
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 44456777888888888877764332221 33 333333322 2222233344568999999999999999999
Q ss_pred hhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcc
Q 048207 105 GNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQK 149 (466)
Q Consensus 105 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~ 149 (466)
.++.+...+.|-.++++|...++....+.++|..++.+++..+..
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.16 Score=45.63 Aligned_cols=134 Identities=21% Similarity=0.179 Sum_probs=77.8
Q ss_pred HHhhHHHHHhhhCCCcc--hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 048207 258 ISFYAPVLFRTIKLSEN--TSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG 335 (466)
Q Consensus 258 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
.....+.+..+.+.+.. ... .......+...++.++.|++.||.|||+.+..+......+.+...+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------- 90 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYG-LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP--------- 90 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHH-HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc---------
Confidence 33445555555554442 344 677777888888889999999999999666665544333322222221
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccccccccccccccc-cchhhhhHHHHH-HHHHHHHHHHHHHHHHHhh
Q 048207 336 FSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPL-EIRSAGQSITVA-VGLLFTSLVAQTFLAMLCH 404 (466)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 404 (466)
....+.........+.+.+ ...+....+..|..|. +.|+...+.... ...++..+++.+.+.+...
T Consensus 91 --~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 91 --NVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred --cchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223333332333333 2334445666788887 577888887777 4666666777555555544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.75 Score=42.61 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHH
Q 048207 242 MAILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVM 321 (466)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 321 (466)
+.+.+.........+.+..-.+++.+++..... +. .+...+.+...+..++.-.+--+...|....++..+..+..++
T Consensus 21 ~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~-~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~ 98 (406)
T KOG1479|consen 21 LIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SK-NFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILF 98 (406)
T ss_pred HHHHHHhcccccchHhhhccHHHHHhhcCCCch-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444556666666777665544433 22 3444444444444444433333333222222222222222222
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 048207 322 IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAM 401 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (466)
.......... .+..........+......+.+.+...+.+ +.. ...+|++.....++=.+..+.+ ..+...+....
T Consensus 99 i~~l~~~~v~-~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~-~G~-a~~~P~~ytqavm~G~a~aG~l-~Sl~~i~tka~ 174 (406)
T KOG1479|consen 99 IVTLDLALVK-TDTWTNGFFLVTLIIVVLLNLANAVVQGSL-YGL-AGLFPSEYTQAVMSGQALAGTL-TSLLRILTKAA 174 (406)
T ss_pred HHHHHHHhhc-cCCccchhHHHHHHHHHHHhhhhhhhccch-hhh-hhcCCHHHHHHHHhcchhHhHH-HHHHHHHHHHh
Confidence 2111111101 111122233344445555555555555555 566 3567777644433322222222 22222222333
Q ss_pred Hhhcc--cceehhhHHHHHHHHHhhheecc
Q 048207 402 LCHFK--AGVFFFFGGWLTVMTTFVHFFLP 429 (466)
Q Consensus 402 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 429 (466)
.+... ...++..+.+..+++.+++..++
T Consensus 175 ~~~~~~sA~~yF~~s~~~~llC~i~y~~l~ 204 (406)
T KOG1479|consen 175 FSDSRTSALIYFITSTVILLLCFVLYLVLP 204 (406)
T ss_pred cCCCCceeehhHHHHHHHHHHHHHHHHHhh
Confidence 33222 22344455555555555555444
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.08 Score=46.43 Aligned_cols=132 Identities=11% Similarity=0.025 Sum_probs=80.9
Q ss_pred HHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHHHHhcCC
Q 048207 39 SLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAP 118 (466)
Q Consensus 39 ~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 118 (466)
.+.-+-.+-..+--+.+....||+---+=..+..++.+.+.++.+++++.++=+++-.+..++.|.....-.++-+. ++
T Consensus 66 ~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y~ 144 (409)
T KOG3880|consen 66 AVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-YP 144 (409)
T ss_pred hhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-CC
Confidence 33333444555555666677788654444456677788899999999999999999999999888766655554433 22
Q ss_pred CcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc
Q 048207 119 PKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF 176 (466)
Q Consensus 119 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 176 (466)
....+.+..+.+.+.++|..--..+.+..+ .+-|...++...+.++.....++
T Consensus 145 ----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~-~spk~Tlli~l~lP~lfa~~yf~ 197 (409)
T KOG3880|consen 145 ----SIVIAGWSSGTGGAGLIGASSYAFLTSWAN-LSPKSTLLIMLFLPALFAFAYFF 197 (409)
T ss_pred ----CceeccccCCCCcchhhhhhHHHHHhhhcC-CChhhHHHHHHHHHHHHHHHHHh
Confidence 234455555555555566554444444322 45666666666554444444444
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.19 Score=45.50 Aligned_cols=107 Identities=6% Similarity=-0.127 Sum_probs=56.4
Q ss_pred HHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhh------hhhcc------chhHHHHHHHHhhhhhhhh--hhhhhH
Q 048207 46 ITGILASLIASSVTRALGGKVSILIGGVAFLAGSAL------GGSAF------NIYMLIFGRLLLGVGIDFG--NQSVPL 111 (466)
Q Consensus 46 l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~------~~~~~------~~~~l~~~r~l~G~~~g~~--~~~~~~ 111 (466)
....+..++.|...|+..|+|++...+.+--++... ..+.+ ++..+..+-++.-.-.+.. ...+.+
T Consensus 74 gs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~ 153 (503)
T KOG2601|consen 74 GSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGT 153 (503)
T ss_pred hHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 345566778889999999999998876554333332 22332 4444444443332211111 111111
Q ss_pred --HHHhcC----CCccc---CchhhHHHHHHHHHHHHHHHHhhhhcccCC
Q 048207 112 --YLSEMA----PPKCR---GAFNIGFQVCVATGILSANLLNYGTQKIKG 152 (466)
Q Consensus 112 --~i~~~~----~~~~r---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 152 (466)
.-.||. ..+.+ .++.+.....-..-..++|.+.+.+..+.+
T Consensus 154 i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvs 203 (503)
T KOG2601|consen 154 ILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVS 203 (503)
T ss_pred EEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeec
Confidence 122333 22223 333355555566667888888887776543
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.88 E-value=3.4 Score=35.26 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=22.3
Q ss_pred HHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHH
Q 048207 285 GGIGTVSAILPMILADKLGRKVLFLLGGIQMLVS 318 (466)
Q Consensus 285 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 318 (466)
.++..+.-+-+-+++.|+..|++.+.+.+++.+.
T Consensus 250 ~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 250 ALCTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 3444444444556788899888888876666554
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.42 Score=45.32 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=36.5
Q ss_pred HHHHHhcccchhHHhhHHHHHhh--hCCCcchhh--HHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhh-HHHHHHHH
Q 048207 246 IPFFQQVTGVNIISFYAPVLFRT--IKLSENTSL--LMSALVTGGIGTVSAILPMILADKLGRKVLFLLGG-IQMLVSQV 320 (466)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~-~~~~~~~~ 320 (466)
+.++.+....+....-.|.++++ .+.+-.+.+ .+..-++.+=-+-+.++=...++|+||||..++-. .++++.++
T Consensus 7 ~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~ 86 (544)
T PF13000_consen 7 LLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILML 86 (544)
T ss_pred HHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHH
Confidence 33444544444444456777766 444444333 01112222222222233344566899999876533 33333333
Q ss_pred HHH
Q 048207 321 MIG 323 (466)
Q Consensus 321 ~~~ 323 (466)
.++
T Consensus 87 ~l~ 89 (544)
T PF13000_consen 87 YLS 89 (544)
T ss_pred HHH
Confidence 333
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.48 Score=45.71 Aligned_cols=117 Identities=14% Similarity=0.054 Sum_probs=73.0
Q ss_pred HHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCC----------ccchh--------hHHHHHHH
Q 048207 287 IGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG----------FSIGY--------AYLILVLI 348 (466)
Q Consensus 287 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--------~~~~~~~~ 348 (466)
+.++...+..++++++++.++..+..........++++..+.....-+. .+... .|...+.-
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 3455566788999999999988877777777666666654321110000 00111 11111111
Q ss_pred HHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 048207 349 CVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLC 403 (466)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
+..-.......+.+-|.+++|.++.++..+-.++....++++..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122233457888999999999999999999999999999988888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.069 Score=45.86 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=37.3
Q ss_pred hHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHH
Q 048207 261 YAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVS 318 (466)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 318 (466)
|.-++.+++++...+.+ .++.......++...+.|-+.||.|||+.-+.-++...++
T Consensus 59 YvYyLYstYgFgkG~Ig-qLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLs 115 (454)
T KOG4332|consen 59 YVYYLYSTYGFGKGDIG-QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILS 115 (454)
T ss_pred eeeeeehhcCccCCccc-eeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHH
Confidence 33334567788777777 5555544555666677788999999998766554444444
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.52 E-value=4.1 Score=36.61 Aligned_cols=99 Identities=22% Similarity=0.203 Sum_probs=69.1
Q ss_pred hhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHHHHhcCCC--cc
Q 048207 44 LYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLYLSEMAPP--KC 121 (466)
Q Consensus 44 ~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~ 121 (466)
..+....++++.+.+..++|-|+++.++...+......- +-+.+..++-.-...|++.+..+..--+|+++.... ++
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 345556667777799999999999999988877644322 346788899999999999999998877777666542 22
Q ss_pred c---------CchhhHHHHHHHHHHHHHHHH
Q 048207 122 R---------GAFNIGFQVCVATGILSANLL 143 (466)
Q Consensus 122 r---------~~~~~~~~~~~~~G~~~~~~~ 143 (466)
| .+..+.+.+.+..+..+|..+
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~i 176 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLI 176 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHH
Confidence 3 345555555555554444333
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.2 Score=46.86 Aligned_cols=117 Identities=11% Similarity=-0.082 Sum_probs=72.7
Q ss_pred eehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcccccccccccccccccc---chhhhhHHH
Q 048207 307 LFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLE---IRSAGQSIT 383 (466)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~ 383 (466)
.+.++.++..++.+++.+....... .+........+.+.+...+.+..=+.+ ..+..|.++++ .|...+...
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~----~~~~~~~~~~~gL~lia~G~G~~K~ni-~~~~~dq~~~~~~~~~~~~F~~f 77 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSL----PSGIQLGLFYIGLALIAVGTGGIKPNI-SPFGADQYDEDDDSRRDSFFNWF 77 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC----------CHHHHHHHHHHHHHHCCHHHH-HHHHHHCSSTTTTTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchh----hhhHHHHHHHHHHHHHHhccccccccH-HHHHHHHhcccchhhhhhhHHHH
Confidence 4556677777777775554321110 011123344555555555555444444 55557877765 456677788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccceehhhHHHHHHHHHhhheec
Q 048207 384 VAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMTTFVHFFL 428 (466)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (466)
....++|+.++....+++.++.++...+....++.+++++.+..-
T Consensus 78 Y~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 78 YWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 889999999999999999999998888888777777776665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.33 E-value=3 Score=39.66 Aligned_cols=118 Identities=11% Similarity=-0.043 Sum_probs=75.6
Q ss_pred HHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCC-----------ccch--------hhHHHHHH
Q 048207 287 IGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG-----------FSIG--------YAYLILVL 347 (466)
Q Consensus 287 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--------~~~~~~~~ 347 (466)
+.++..++..++.+++.+.++............+++++..+......+. .+.. ..|...+.
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 5567777888899999999988877777777777777665432111110 0100 01222222
Q ss_pred HHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 048207 348 ICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCH 404 (466)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
..+.-.--+....-+-+..++|....++..+-.++.+..++++..+++.+..++.++
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222222222223334467778999999999999999999999999888888887763
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=92.27 E-value=1 Score=42.94 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhcccccc
Q 048207 283 VTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPL 362 (466)
Q Consensus 283 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (466)
...+..++..+....+..|+..|.-+..+.++..+..++........ . ......+..+...++.+.+.+...+..
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~--~---~~~~~f~~~~~~v~~~g~~~~~~q~s~ 127 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQ--T---SETGFFVTTMASVVIINSGMALLQGSL 127 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeec--C---CcchHHHHHHHHHHHHHhhhhhhcccc
Confidence 34444555555555666666654444444333332222222211110 0 011223333344444444444444444
Q ss_pred ccccccccccccchh
Q 048207 363 GWLVPSEIFPLEIRS 377 (466)
Q Consensus 363 ~~~~~~~~~p~~~r~ 377 (466)
..+ +..+|++...
T Consensus 128 -~gl-a~~fp~~~~~ 140 (437)
T TIGR00939 128 -FGL-AGVFPSTYSS 140 (437)
T ss_pred -hhh-cccCCHHHHH
Confidence 566 4677866533
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=2.2 Score=41.86 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh-hcc-cceehhhHHHHHHHHH
Q 048207 376 RSAGQSITVAVGLLFTSLVAQTFLAMLC-HFK-AGVFFFFGGWLTVMTT 422 (466)
Q Consensus 376 r~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 422 (466)
-+...|-.+....+|+.+|+.+.+.++- ..| ....+..+.+.+++++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888887765 455 2333444444444443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.96 E-value=11 Score=37.40 Aligned_cols=162 Identities=14% Similarity=0.002 Sum_probs=92.0
Q ss_pred hhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC-----
Q 048207 260 FYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADK-LGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH----- 333 (466)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 333 (466)
....++...++.+...+. -....+........+.+++++|. +||-+.+.++.++...++.++..........+
T Consensus 59 nlv~ylt~~~~~~~~~aa-~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 59 NLVTYLTLELHASGGGAA-NNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred HHHHHHHHHhccchHHHH-HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 333444456676665555 56666666677778889999997 58888888888888888777766655442111
Q ss_pred --C--Cccchh-hHHHHHHHHHHHHh-hhccccccccccccccccc----cchh--hhhHHHHHHHHHHHHHHHHHHHHH
Q 048207 334 --G--GFSIGY-AYLILVLICVYKAG-FGFSWGPLGWLVPSEIFPL----EIRS--AGQSITVAVGLLFTSLVAQTFLAM 401 (466)
Q Consensus 334 --~--~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~----~~r~--~~~g~~~~~~~~~~~~~~~~~~~~ 401 (466)
. ..+... ....++...+.... -..+.-+....+-+|-++. +.+. .-+.......+.|..+...+..+.
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0 011111 11122222222222 2223333335555677762 2222 456667777777777777777777
Q ss_pred HhhcccceehhhHHHHHHHHH
Q 048207 402 LCHFKAGVFFFFGGWLTVMTT 422 (466)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~ 422 (466)
-++.+|..-+.....+..+++
T Consensus 218 q~~~~w~lgf~i~~~~~~lai 238 (571)
T KOG1237|consen 218 QDNVGWKLGFGIPTVLNALAI 238 (571)
T ss_pred hhcccceeeccHHHHHHHHHH
Confidence 777776655444444433333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.57 E-value=4.8 Score=37.10 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhh-----hcCCeeeehhh
Q 048207 244 ILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILAD-----KLGRKVLFLLG 311 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~g~~~~~~~~ 311 (466)
....+..+........ -.|.+++..+.+-...+ .....+. -.-.-++...++| |+||||..++-
T Consensus 36 Ll~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a-~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 36 LLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQA-IFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred HHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhh-hhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeee
Confidence 3344555655665555 78999887666655544 2222111 1223455666777 99999887653
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.16 E-value=1.1 Score=39.74 Aligned_cols=116 Identities=11% Similarity=-0.005 Sum_probs=83.6
Q ss_pred ccccCCc-chhHHHHHhhhHHHHHHHHhHHhhhhhhcch------HHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhh
Q 048207 28 DYCKFDS-QLLTSLTSSLYITGILASLIASSVTRALGGK------VSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGV 100 (466)
Q Consensus 28 ~~~~~s~-~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr------~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 100 (466)
+.+.++. .|.-|....|.+|..++.- +-|+=|- .++..--.++.+...+..+.+++|..++.-+.-|+
T Consensus 280 ~g~sls~~sqYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGL 354 (409)
T KOG3880|consen 280 HGFSLSKDSQYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGL 354 (409)
T ss_pred cCCccchhhcchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 3444443 3577888887777654322 1122111 12233345566666677889999999999999998
Q ss_pred hhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhc
Q 048207 101 GIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQ 148 (466)
Q Consensus 101 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~ 148 (466)
-.|..++...--+.+-.++++|-.+++....+-++|..++..++-.+.
T Consensus 355 lGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 355 LGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred cCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 888888888888888788899999999999999999999988875544
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.55 E-value=2.2 Score=30.75 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=32.7
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhH
Q 048207 373 LEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFG 414 (466)
Q Consensus 373 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (466)
++.++.+.++-...-.+++.+....+|++.|++-...+|...
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglI 78 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLI 78 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 456788888888888999999999999999988644444333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 466 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 7e-31 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 466 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 8e-04
Identities = 43/334 (12%), Positives = 94/334 (28%), Gaps = 112/334 (33%)
Query: 139 SANLLNYGTQKIKGGWGWKISLAMAAA---------PASI--LTIGSLFLPETPNSIIQR 187
+ N+L G G G K +A+ I L + + +P ++++
Sbjct: 150 AKNVLIDG----VLGSG-KTWVALDVCLSYKVQCKMDFKIFWLNLKNC---NSPETVLEM 201
Query: 188 TND--HQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAIL 245
+Q R +++++ + + + + Y L+ +L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR---------LLKSKPYENCLL--VL 250
Query: 246 IPFFQQVTGVNII---SFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKL 302
V + +L T + + T L SA T I + + +
Sbjct: 251 ----LNVQNAKAWNAFNLSCKILLTT-RFKQVTDFL-SAATTTHISLDHHSMTLTPDEVK 304
Query: 303 GRKVLFLLGGIQMLVSQVMIG-----SIMAAQLGDHGGFSIGYAYL------ILVLICVY 351
+ +L Q L +V+ SI+A + D + ++ ++ +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL- 363
Query: 352 KAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFF 411
+ + P E R +F L VF
Sbjct: 364 ----------------NVLEPAEYRK-----------MFDRLS--------------VF- 381
Query: 412 FFGGWLTVMTTFVHFFLPETKNVPIELMDKVWRE 445
P + ++P L+ +W +
Sbjct: 382 -----------------PPSAHIPTILLSLIWFD 398
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.39 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.39 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.36 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.3 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.3 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.25 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.11 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-47 Score=366.54 Aligned_cols=405 Identities=24% Similarity=0.421 Sum_probs=320.1
Q ss_pred CCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhh------------------hccchhHHHH
Q 048207 32 FDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGG------------------SAFNIYMLIF 93 (466)
Q Consensus 32 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~------------------~~~~~~~l~~ 93 (466)
.+..+.|++.+++.+|..+|++++|+++||+|||+++.++.+++.+++++++ +++|++.+++
T Consensus 52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 4566789999999999999999999999999999999999999999999988 4789999999
Q ss_pred HHHHhhhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCC-----CcchHHHHHhhhHHHH
Q 048207 94 GRLLLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKG-----GWGWKISLAMAAAPAS 168 (466)
Q Consensus 94 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~~~wr~~f~~~~~~~~ 168 (466)
+|+++|+|.|+..+...++++|+.|+++|++..++.+.+..+|.++++.++.......+ .+.||+.+.+..++.+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999988876654322 2569999999999999
Q ss_pred HHHHHhhcccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHH
Q 048207 169 ILTIGSLFLPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPF 248 (466)
Q Consensus 169 ~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (466)
+..+..+++||||+|+..+++ .+++++.+++..++++.+++..+.++..+++++... ... ....++.........
T Consensus 212 ~~~~~~~~~peSp~~L~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~ 286 (491)
T 4gc0_A 212 LFLMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGG-RLL---MFGVGVIVIGVMLSI 286 (491)
T ss_dssp HHHHHGGGSCCCHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHH---HSCCTHHHHHHHHHH
T ss_pred hhhhhhhcCCCChHHHHHcCc-hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhh-HHH---HhcccHHHHHHHHHH
Confidence 999999999999999999988 888888888776655444433333322222211111 111 122334555566666
Q ss_pred HHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHh
Q 048207 249 FQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAA 328 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (466)
+.+..+.+.+..|.+.+.+..+.+..... ......++..+++.++.+++.||+|||+.+..+...+.++++.+......
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 365 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc
Confidence 67777788888999999888888777766 67778889999999999999999999999998888888887776655421
Q ss_pred hcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc---
Q 048207 329 QLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHF--- 405 (466)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--- 405 (466)
....+..+...+++..+++.++.++.+.+.+|++|++.|+++.|+.+.++++++.+++.+.+.+.+..
T Consensus 366 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~ 436 (491)
T 4gc0_A 366 ---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV 436 (491)
T ss_dssp ---------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH
T ss_pred ---------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234445555666667777888888899999999999999999999999999999998887765432
Q ss_pred ---c-cceehhhHHHHHHHHHhhheecccCCCCCHHHHHHHHccccccch
Q 048207 406 ---K-AGVFFFFGGWLTVMTTFVHFFLPETKNVPIELMDKVWREHWFWRK 451 (466)
Q Consensus 406 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (466)
+ ...++++++++++..++.++++||||+|++||+|+.+|++.++++
T Consensus 437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccc
Confidence 2 224556677777777778889999999999999988876644433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=304.22 Aligned_cols=371 Identities=14% Similarity=0.051 Sum_probs=271.1
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhh----ccchhHHHHHHHHh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGS----AFNIYMLIFGRLLL 98 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~l~~~r~l~ 98 (466)
.|.+.+++ .|..+.|++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++ ++|++.++++|+++
T Consensus 51 ~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 129 (451)
T 1pw4_A 51 MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 129 (451)
T ss_dssp HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHH
T ss_pred HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 47778899 99999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcc-hHHHHHhhhHHHHHHH-HHhhc
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWG-WKISLAMAAAPASILT-IGSLF 176 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~-~~~~~ 176 (466)
|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+. .+ ||+.|++.+++.++.. +..++
T Consensus 130 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 130 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999876543 45 9999999988777654 44566
Q ss_pred ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCc-chHHhhhhhhhhHHHHHHHHHHHHhcccc
Q 048207 177 LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINH-PFKKIIQRKYRPQLVMAILIPFFQQVTGV 255 (466)
Q Consensus 177 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (466)
+||+|+....+++++.+ ++.+.+. +++.+++...+. ..++.++ ++.++...+..+......
T Consensus 207 ~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 268 (451)
T 1pw4_A 207 MRDTPQSCGLPPIEEYK-----------NDYPDDY---NEKAEQELTAKQIFMQYVLP----NKLLWYIAIANVFVYLLR 268 (451)
T ss_dssp CCCSSTTTCCCSCTTTC-----------CC----------------CCTHHHHHHTSS----CHHHHHHHHHHHHHHHHH
T ss_pred ccCCHhhcCCCChhhhc-----------ccccccc---hhhhhcccccccchHHHHHc----CHHHHHHHHHHHHHHHHH
Confidence 88887643221110000 0000000 000000000010 1223332 233344444444444456
Q ss_pred hhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhc--CCeeeehhhhHHHH-HHHHHHHHHHHhhcC
Q 048207 256 NIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKL--GRKVLFLLGGIQML-VSQVMIGSIMAAQLG 331 (466)
Q Consensus 256 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 331 (466)
.....+.|.++++ .|.+....+ .......++.+++.++.+++.||+ +||+.+..+..+.. ++.+++...
T Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 341 (451)
T 1pw4_A 269 YGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN------ 341 (451)
T ss_dssp HHHHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC------
T ss_pred HHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh------
Confidence 6778888988876 788888877 888899999999999999999999 99888776655554 333332211
Q ss_pred CCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHH-HHHHHHHHHHHHHhhccccee
Q 048207 332 DHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLL-FTSLVAQTFLAMLCHFKAGVF 410 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 410 (466)
+....+......++.+.+.+...... ..+..|.+|++.|+++.|+.+.+..+ +..++|.+.+.+.+..++...
T Consensus 342 -----~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 415 (451)
T 1pw4_A 342 -----PAGNPTVDMICMIVIGFLIYGPVMLI-GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 415 (451)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHTHHHHHH-HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred -----cccCHHHHHHHHHHHHHHHhchHHHH-HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 11233444444444554444333333 56668999999999999999999999 999999999999999886665
Q ss_pred hhhHHHHHHHHHhhheec
Q 048207 411 FFFGGWLTVMTTFVHFFL 428 (466)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~ 428 (466)
+...+.+.+++.+..+..
T Consensus 416 ~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 416 FMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555554444443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=283.17 Aligned_cols=349 Identities=9% Similarity=0.048 Sum_probs=261.8
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhh---hhccchhHHHHHHHHhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALG---GSAFNIYMLIFGRLLLG 99 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G 99 (466)
.|.+++++|+|..+.|++.+.+.++..++++++|+++||+|||++++++.++.+++.+++ +++++++.++++|+++|
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 128 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA 128 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred hhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhc-ccCCC----------------------cch
Q 048207 100 VGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQ-KIKGG----------------------WGW 156 (466)
Q Consensus 100 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~----------------------~~w 156 (466)
++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +..+. .+|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 208 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSV 208 (438)
T ss_dssp HHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999887 43321 019
Q ss_pred HHHHHhhhHHHHHHHHHhhc--ccCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhh
Q 048207 157 KISLAMAAAPASILTIGSLF--LPETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQR 234 (466)
Q Consensus 157 r~~f~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (466)
|+.|++.+++.++..+..++ .||+++.. ++ ++ ++++.+.++++.+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~-~~---------------------------~~~~~~~~~~~~~~~ 257 (438)
T 3o7q_A 209 QTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS-DA---------------------------KQGSFSASLSRLARI 257 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC-CS---------------------------STTSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc-cc---------------------------cccchhhhHHHHHhC
Confidence 99998877666555443333 46654310 00 00 000111233444444
Q ss_pred hhhhHHHHHHHHHHHHhcccchhHHhhHHHH-Hhhh-CCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhh
Q 048207 235 KYRPQLVMAILIPFFQQVTGVNIISFYAPVL-FRTI-KLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGG 312 (466)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 312 (466)
+..+ ...+..+...........+.|.+ +++. |.+....+ .......++.+++.++.+++.||++||+.+..+.
T Consensus 258 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~ 332 (438)
T 3o7q_A 258 RHWR----WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA 332 (438)
T ss_dssp SHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3322 22233333333456677788888 7765 88888888 8888889999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHH
Q 048207 313 IQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTS 392 (466)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~ 392 (466)
.+..++.+++... +..+ ......+.+.+.+...+ ....+..|.+|++ ++.+.++.. .+.+++.
T Consensus 333 ~~~~~~~~~~~~~-------------~~~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~ 395 (438)
T 3o7q_A 333 LIAMALCLISAFA-------------GGHV-GLIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGG 395 (438)
T ss_dssp HHHHHHHHHHHHC-------------CHHH-HHHHHHHHHHHHTTHHH-HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHH
T ss_pred HHHHHHHHHHHHc-------------CCcH-HHHHHHHHHHHHHHHHH-HHHHHHHhhcccc-ccchhhHHH-HHHHHHH
Confidence 7777666555432 1122 23333444555544443 4466667888876 888888877 6779999
Q ss_pred HHHHHHHHHHhhcc-cceehhhHHHHHHHHHhh
Q 048207 393 LVAQTFLAMLCHFK-AGVFFFFGGWLTVMTTFV 424 (466)
Q Consensus 393 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 424 (466)
++|.+.|.+.+..+ +...+...+++.+...+.
T Consensus 396 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 396 IVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 99999999999988 666666555444444433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=264.76 Aligned_cols=392 Identities=13% Similarity=0.034 Sum_probs=249.1
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhh-hcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhh
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRA-LGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFG 105 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 105 (466)
++|+|+|..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45699999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHhcCCCcc--cCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc-cCChh
Q 048207 106 NQSVPLYLSEMAPPKC--RGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL-PETPN 182 (466)
Q Consensus 106 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~es~~ 182 (466)
.+...+++.|++|+++ |++++++++.+.++|..++|.+++.+.+. .+||+.|++.++..++..+..++. |+..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999988 67788889999999999999999988775 459999999877666655444332 22110
Q ss_pred h---hhhcCCcHHHHHHHHHH----------------HhCccchHHHHHH--HH---H----HhhccccCCcchHHhhhh
Q 048207 183 S---IIQRTNDHQKAEKMLQR----------------VHGTADVQAELED--LI---R----ASSDSKNINHPFKKIIQR 234 (466)
Q Consensus 183 ~---~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~--~~---~----~~~~~~~~~~~~~~~~~~ 234 (466)
. ...++.+.++.++..+. ..+..+.+..... .. . .....++.+.+..+ ++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 280 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTE--HL 280 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHH--HH
Confidence 0 00111112232222221 0111110000000 00 0 00000000000000 11
Q ss_pred hhhhHHHHHHHHHHHHhcccchhHHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeeh----
Q 048207 235 KYRPQLVMAILIPFFQQVTGVNIISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFL---- 309 (466)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~---- 309 (466)
+.. ......+........+.....+.+.+.++ .+.+....+ .......++.+++.++.+++.||++||+...
T Consensus 281 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 281 RVV--SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS-WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp -CT--THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG-GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH-HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 111 11111111222222234445556666654 455544455 6667778888899999999999999997765
Q ss_pred -hhhHHHHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHH
Q 048207 310 -LGGIQMLVSQVMIGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGL 388 (466)
Q Consensus 310 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 388 (466)
.+..+..++.+++.......... .....+......++.+.+.+...+.. ..+..|.+|++.|+++.|+.+....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALYGTS----GKVSPLWLVGSWALVILGEMLISPVG-LSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHCCCC----TTCCTHHHHHHHHHHHHHHHTTTTHH-HHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----CCccHHHHHHHHHHHHHHHHHHhHHH-HHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55555555555544432111000 11223444455555555555444444 6677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccceehhhHHHHHHHHHhhheecccC
Q 048207 389 LFTSLVAQTFLAMLCHFKAGVFFFFGGWLTVMTTFVHFFLPET 431 (466)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
++..+++.+.+.+.+......+...++++.+..++.++..++.
T Consensus 433 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 433 VGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877665444444555555555555555544443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=266.84 Aligned_cols=338 Identities=13% Similarity=0.131 Sum_probs=254.3
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGI 102 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 102 (466)
.|.+.+++|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+..+..++.++.++++|++.+++.|+++|++.
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHH-HhhcccCCh
Q 048207 103 DFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTI-GSLFLPETP 181 (466)
Q Consensus 103 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~es~ 181 (466)
+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+. .+||+.|++.++..++..+ ..+++||++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 999999999999999999999999999999999999999999988764 4699999998887777655 455678876
Q ss_pred hhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHHhh
Q 048207 182 NSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIISFY 261 (466)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (466)
+.. ++ +++.+.++++.++++. ++...+..+...........+
T Consensus 180 ~~~---~~-------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T 2gfp_A 180 PVD---AP-------------------------------RTRLLTSYKTLFGNSG----FNCYLLMLIGGLAGIAAFEAC 221 (375)
T ss_dssp TTT---CC-------------------------------CCCTTTCSTHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---cc-------------------------------cccHHHHHHHHhcCcc----hHHHHHHHHHHHHHHHHHHHH
Confidence 421 00 0111223444444432 222233333333345566677
Q ss_pred HHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHH-HHHHHHHHHHHHHhhcCCCCCccch
Q 048207 262 APVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQ-MLVSQVMIGSIMAAQLGDHGGFSIG 339 (466)
Q Consensus 262 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
.|.+.++ .|.+....+ .......++.+++.++.+++.||.+++ +..+... ...+...+..... +..
T Consensus 222 ~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~ 289 (375)
T 2gfp_A 222 SGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF---------GVM 289 (375)
T ss_dssp CSCSSHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH---------HHH
T ss_pred HHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh---------ccc
Confidence 7877765 788877777 888888999999999999999998872 2222222 2222211111110 112
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhhHH
Q 048207 340 YAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFFGG 415 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (466)
+.+......++.+.+.+...+.. ..+..|..| +.|+++.|+.+....++..++|.+.+.+.+..++...+...+
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLA-TSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTT-HHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHH-HHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 33444455555666665554444 566689998 899999999999999999999999999887766655555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=241.83 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=134.0
Q ss_pred ccccccc------CCcchhHHHHHhhhHHHHHHHHhHHhhhhhh-cchHHHHHHHHHHHHHHhhhhhcc-chhHHHHHHH
Q 048207 25 KVSDYCK------FDSQLLTSLTSSLYITGILASLIASSVTRAL-GGKVSILIGGVAFLAGSALGGSAF-NIYMLIFGRL 96 (466)
Q Consensus 25 ~i~~~~~------~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~ 96 (466)
.+++++| +|..+.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|+
T Consensus 38 ~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (524)
T 2xut_A 38 FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLF 117 (524)
T ss_dssp HHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3456677 9999999999999999999999999999999 999999999999999999999999 9999999999
Q ss_pred HhhhhhhhhhhhhhHHHHhcCCCcccCchhhH---HHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHH
Q 048207 97 LLGVGIDFGNQSVPLYLSEMAPPKCRGAFNIG---FQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIG 173 (466)
Q Consensus 97 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 173 (466)
+.|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+. .+||+.|++.++..++..+.
T Consensus 118 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 118 LIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877666 8999999999999999888764 45999999988877665555
Q ss_pred hhc
Q 048207 174 SLF 176 (466)
Q Consensus 174 ~~~ 176 (466)
.++
T Consensus 195 ~~~ 197 (524)
T 2xut_A 195 FWL 197 (524)
T ss_dssp HHS
T ss_pred HHH
Confidence 443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-30 Score=242.70 Aligned_cols=359 Identities=10% Similarity=0.008 Sum_probs=218.7
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHH---hhhhhccch-hHHHHHHHHhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGS---ALGGSAFNI-YMLIFGRLLLGVG 101 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~---~~~~~~~~~-~~l~~~r~l~G~~ 101 (466)
+++++|+|+.+.|++.+.+.++..++++++|+++||+|||++++++..+++++. ....+++.. ..+...+++.|++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999888775532 222333322 2345567777766
Q ss_pred hhhhhhhhhHHHHhcCCC--cccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcccC
Q 048207 102 IDFGNQSVPLYLSEMAPP--KCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFLPE 179 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 179 (466)
.+...+.....+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..++..+..++.+|
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCc
Confidence 665554444445454433 456777788877888899999999888765 35999999888776555555555444
Q ss_pred ChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhHH
Q 048207 180 TPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNIIS 259 (466)
Q Consensus 180 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
+++. +.+ .++.+ +.++++....++++.++++...... +..+.....+....
T Consensus 190 ~~~~---~~~-~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 190 DAPS---SAT-VANAV---------------------GANHSAFSLKLALELFRQPKLWFLS----LYVIGVSCTYDVFD 240 (417)
T ss_dssp CCSC---SSC-SSSSS---------------------SSCCCCCCHHHHHHHTTCHHHHHHH----HHHHHHHHHHHHHH
T ss_pred cccc---ccc-ccccc---------------------ccccccccHHHHHHHhcCCchhhHH----HHHHHHHHHHHHHH
Confidence 3311 000 00000 0000000011233444433222222 11111111233344
Q ss_pred hhHHHHHhhh-CC---CcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 048207 260 FYAPVLFRTI-KL---SENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGG 335 (466)
Q Consensus 260 ~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
.+.|.++++. +. +....+ .......++.+++.++.++++||+|||+.+..+..+..+..+.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---------- 309 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---------- 309 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 4566665442 21 122223 56667777888899999999999999998877766665554433211
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHH-HHHHHHHHHHHHHHHHHHHhhcccceehhhH
Q 048207 336 FSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSIT-VAVGLLFTSLVAQTFLAMLCHFKAGVFFFFG 414 (466)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (466)
+..+..+....+.+.+......+ .+.+++|.+|++.|+++.++. +....+++.++|.+.|.+.+..++...+...
T Consensus 310 ---~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 310 ---TSALEVVILKTLHMFEVPFLLVG-CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp ---CSHHHHHHHTTHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 11222333333333332222222 256778999999999999995 7788899999999999999877755444444
Q ss_pred HHHHHHHH-hhheecccCC
Q 048207 415 GWLTVMTT-FVHFFLPETK 432 (466)
Q Consensus 415 ~~~~~~~~-~~~~~~~~~~ 432 (466)
+.+.+++. +.+...+|++
T Consensus 386 ~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 386 GLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHHhhhcCCC
Confidence 44444443 3344445433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5e-13 Score=126.93 Aligned_cols=151 Identities=13% Similarity=0.025 Sum_probs=117.7
Q ss_pred HHHHHHHhcccchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHH
Q 048207 244 ILIPFFQQVTGVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIG 323 (466)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 323 (466)
..+..+.............|.+.++++.+..+.+ +..+...++..++.++.|+++||+|||+.+..+.++..++.++..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3333443333445666778888899999999888 899999999999999999999999999999999998888887774
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH-
Q 048207 324 SIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAML- 402 (466)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~- 402 (466)
.... .++.+..++..++.+.+.+...... ..+..|.+|++.|+.++++.+....+|..+++.+.+.+.
T Consensus 110 ~~~~----------~~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 110 PAAE----------IMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHH----------TTCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hccc----------cccHHHHHHHHHHHHhhHHHhhhhH-HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3221 1334555666666666666555444 666789999999999999999999999999999999888
Q ss_pred hhcc
Q 048207 403 CHFK 406 (466)
Q Consensus 403 ~~~~ 406 (466)
+..+
T Consensus 179 ~~~~ 182 (438)
T 3o7q_A 179 SNVP 182 (438)
T ss_dssp TSSC
T ss_pred cccc
Confidence 4443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-12 Score=121.36 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=129.6
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhh--cchHHHHHHHHHHH-HHHhhhhhc--cchhHHHHHHHHhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRAL--GGKVSILIGGVAFL-AGSALGGSA--FNIYMLIFGRLLLGV 100 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-i~~~~~~~~--~~~~~l~~~r~l~G~ 100 (466)
+++.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|+
T Consensus 279 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 358 (451)
T 1pw4_A 279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 358 (451)
T ss_dssp BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 4556899999999999999999999999999999999 99999988887776 777777776 367888888999999
Q ss_pred hhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHH-HHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhcc
Q 048207 101 GIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVAT-GILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLFL 177 (466)
Q Consensus 101 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 177 (466)
+.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+.. +|+..|++.++..++..+..+++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHHH
Confidence 99988898899999999999999999999999999 9999999999888754 59999998888777766555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-12 Score=119.46 Aligned_cols=164 Identities=14% Similarity=0.109 Sum_probs=124.5
Q ss_pred cchhHHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCC
Q 048207 254 GVNIISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDH 333 (466)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
.........|.+.++.|.+..+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------- 85 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------- 85 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------
Confidence 345556667778888999998888 88999999999999999999999999999999988888888777654
Q ss_pred CCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccceehhh
Q 048207 334 GGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFKAGVFFFF 413 (466)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
++.+.......+.+.+.+.... ....+..|.+|+++|++++++.+....++..++|.+.+.+.+..++...+..
T Consensus 86 -----~~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 86 -----SSLTVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 2344445555555555544433 3356668999999999999999999999999999999999887776655554
Q ss_pred HHHHHHHHHh-hheecccCC
Q 048207 414 GGWLTVMTTF-VHFFLPETK 432 (466)
Q Consensus 414 ~~~~~~~~~~-~~~~~~~~~ 432 (466)
.++..+...+ ..+..||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHCcccC
Confidence 4444444333 445556544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-12 Score=119.41 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=122.5
Q ss_pred CcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhhhhhhHH
Q 048207 33 DSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGNQSVPLY 112 (466)
Q Consensus 33 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 112 (466)
+..+.+++.+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566888888888999999999999999999999999999998888888888888888888888898887777778889
Q ss_pred HHhcCCCcccCchhhH-HHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHh-hcccCCh
Q 048207 113 LSEMAPPKCRGAFNIG-FQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGS-LFLPETP 181 (466)
Q Consensus 113 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~es~ 181 (466)
+.|.+|++.|++..++ ++....+|..++|.+++.+.+. .+++..|.+.++++++..+.. .+.||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999888 4788889999999999987764 458888988887777765543 4456654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-12 Score=125.18 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=119.9
Q ss_pred HHhcccchhHHhhHHHHHhh------hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCeeeehhhhHHHHHHHHH
Q 048207 249 FQQVTGVNIISFYAPVLFRT------IKLSENTSLLMSALVTGGIGTVSAILPMILADK-LGRKVLFLLGGIQMLVSQVM 321 (466)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~ 321 (466)
+.....++....+.+.++++ .|.+..+.+ +..+...++..++.++.|+++|| +|||+.+..+.++..++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 23 MWERFSYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 33333455565666666654 788888888 88999999999999999999999 89999999988888877776
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccc--hhhhhHHHHHHHHHHHHHHHHHHH
Q 048207 322 IGSIMAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEI--RSAGQSITVAVGLLFTSLVAQTFL 399 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~ 399 (466)
+... ++.+...+..++.+.+.+...+.. ..++.|.+|++. |+.+.++.+....+|..++|.+.+
T Consensus 102 ~~~~-------------~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 167 (491)
T 4aps_A 102 LALP-------------FGASALFGSIILIIIGTGFLKPNV-STLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167 (491)
T ss_dssp HHSC-------------CSTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-------------hhHHHHHHHHHHHHHHHHhccchH-HHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH
Confidence 6532 233445555555666555544444 566689999988 777888899999999999999999
Q ss_pred HHHhhcccceehhhHHHHHHHHHhhh
Q 048207 400 AMLCHFKAGVFFFFGGWLTVMTTFVH 425 (466)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (466)
.+.+..++...+...++..+++.+..
T Consensus 168 ~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 168 AAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99998887766655554444444433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=118.81 Aligned_cols=158 Identities=13% Similarity=-0.011 Sum_probs=115.5
Q ss_pred cchhHHhhHHHHH-hhhC------CCcchhhHHHHHHHHHHHHHhhhhhhhhhhhc-CCeeeehhhhHHHHHHHHHHHHH
Q 048207 254 GVNIISFYAPVLF-RTIK------LSENTSLLMSALVTGGIGTVSAILPMILADKL-GRKVLFLLGGIQMLVSQVMIGSI 325 (466)
Q Consensus 254 ~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~ 325 (466)
.++....+.+.++ ++.+ .+..+.+ +......++..++.++.|+++||+ |||+.+..+.++..++.+++.+.
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666665 4578 8888888 888999999999999999999999 99999998888887777666543
Q ss_pred HHhhcCCCCCccchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHH---HHHHHHHHHHHHHHHHHHHH
Q 048207 326 MAAQLGDHGGFSIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSI---TVAVGLLFTSLVAQTFLAML 402 (466)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~~~~~ 402 (466)
+ .+.+..++..++.+.+.+...+.. ..+..|.+|++.|+...+. .+....+|..++|.+.+.+.
T Consensus 106 -----------~-~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 106 -----------E-HSVQGFYTGLFLIALGSGGIKPLV-SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp -----------S-SCHHHHHHHHHHHHHHHHTTHHHH-HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred -----------c-ccHHHHHHHHHHHHHhccccchhH-HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 134445555556666655544444 5666899999999876665 88889999999999999998
Q ss_pred hhcccceehhhHHHHHHHHHhhh
Q 048207 403 CHFKAGVFFFFGGWLTVMTTFVH 425 (466)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~ 425 (466)
+..++...+...+++.++..+..
T Consensus 173 ~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 173 KNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHH
Confidence 88776665555544444444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-10 Score=110.51 Aligned_cols=158 Identities=15% Similarity=0.023 Sum_probs=110.4
Q ss_pred ccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc-----cchhHHHHHHHHh
Q 048207 24 TKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA-----FNIYMLIFGRLLL 98 (466)
Q Consensus 24 ~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~ 98 (466)
|.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+...-+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 44556667777777777888888999999999999999999999999888888777665443 1122222222222
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccC---CCcchHHHHHhhhHHHHHHH-HHh
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIK---GGWGWKISLAMAAAPASILT-IGS 174 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~wr~~f~~~~~~~~~~~-~~~ 174 (466)
+.......+....+.+|.+|.+.|++++++......+|..+++.+...+.+.. ...++...|++.++++++.. +.+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 22222344677789999999999999999999999999888877655543311 01234566777777766654 455
Q ss_pred hcccCCh
Q 048207 175 LFLPETP 181 (466)
Q Consensus 175 ~~~~es~ 181 (466)
+++|||.
T Consensus 461 ~~~PETk 467 (491)
T 4gc0_A 461 KFVPETK 467 (491)
T ss_dssp HHCCCCT
T ss_pred heecCCC
Confidence 6799985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 466 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.45 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.42 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.7e-37 Score=290.02 Aligned_cols=371 Identities=15% Similarity=0.021 Sum_probs=254.4
Q ss_pred CccccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhc----cchhHHHHHHHHh
Q 048207 23 DTKVSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSA----FNIYMLIFGRLLL 98 (466)
Q Consensus 23 ~~~i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~ 98 (466)
.|.++ |+|+|.+|.|++.+++.+++.++++++|+++||+|||+++.++.++.+++.++++++ ++++.+++.|++.
T Consensus 48 ~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (447)
T d1pw4a_ 48 MPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 126 (447)
T ss_dssp HHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHH
T ss_pred HHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHH
Confidence 46665 589999999999999999999999999999999999999999999999999998876 4889999999999
Q ss_pred hhhhhhhhhhhhHHHHhcCCCcccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHH-Hhhcc
Q 048207 99 GVGIDFGNQSVPLYLSEMAPPKCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTI-GSLFL 177 (466)
Q Consensus 99 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~ 177 (466)
|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++...... .+||+.|++.+++.++..+ ...+.
T Consensus 127 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 127 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF--NDWHAALYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT--CCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh--hcccccchhhhhhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998887665533 2599999988877766544 44556
Q ss_pred cCChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchh
Q 048207 178 PETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNI 257 (466)
Q Consensus 178 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (466)
+|+|+.......++.+. +.. ++..+..+++. ...+...+...+++.++......+......+.
T Consensus 205 ~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (447)
T d1pw4a_ 205 RDTPQSCGLPPIEEYKN-----------DYP---DDYNEKAEQEL---TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYG 267 (447)
T ss_dssp CCSSTTTCCCSCTTTCC-----------C-------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhcccchhhhhhh-----------hcc---cchhhcccccc---chhhHHHHHHHcCchHHHHHHHhhhhhhhhhc
Confidence 66664322211100000 000 00000000011 11111112222233444444444444445566
Q ss_pred HHhhHHHHHhh-hCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCc
Q 048207 258 ISFYAPVLFRT-IKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGF 336 (466)
Q Consensus 258 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
...+.|.++++ .+.+....+ .......++.+++.++.+++.||++|++..........+...........
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 338 (447)
T d1pw4a_ 268 ILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-------- 338 (447)
T ss_dssp HHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC--------
T ss_pred chhhhhhhcccccccccchhh-hhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhc--------
Confidence 77778887754 577777777 88888999999999999999999998865554444333333222222100
Q ss_pred cchhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHH-HHHHHHHHHHHhhcccceehhhHH
Q 048207 337 SIGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFT-SLVAQTFLAMLCHFKAGVFFFFGG 415 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 415 (466)
...+.+...+..++.+.+.... .+....+..|.+|++.|+++.|+.+.++++++ .++|.+.+.+.+..|+...+....
T Consensus 339 ~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~ 417 (447)
T d1pw4a_ 339 PAGNPTVDMICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 417 (447)
T ss_dssp CTTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 1223344444444444443332 33345667899999999999999999988855 557888899999988665554444
Q ss_pred HHHHHHHh
Q 048207 416 WLTVMTTF 423 (466)
Q Consensus 416 ~~~~~~~~ 423 (466)
.+.+++.+
T Consensus 418 ~~~~~~~~ 425 (447)
T d1pw4a_ 418 GGSILAVI 425 (447)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=6.2e-29 Score=232.52 Aligned_cols=367 Identities=10% Similarity=-0.032 Sum_probs=235.5
Q ss_pred ccccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchh----HHHHHHHHhhhh
Q 048207 26 VSDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIY----MLIFGRLLLGVG 101 (466)
Q Consensus 26 i~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~----~l~~~r~l~G~~ 101 (466)
+++++|+|+++.|++.+++.++..++++++|+++||+|||++++++..+..++..+..+.++.. ..++.+.+.+.+
T Consensus 34 l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T d1pv7a_ 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc
Confidence 6788999999999999999999999999999999999999999999999999988888766543 445666666666
Q ss_pred hhhhhhhhhHHHHhcCCC--cccCchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHH-HHHHHHHhhccc
Q 048207 102 IDFGNQSVPLYLSEMAPP--KCRGAFNIGFQVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAP-ASILTIGSLFLP 178 (466)
Q Consensus 102 ~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~-~~~~~~~~~~~~ 178 (466)
.+...........+..++ +++.+..+........|..+++.+++.+.+ .+|+..+...... .+...+..+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (417)
T d1pv7a_ 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp GGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc----ccccccccchhhHHHHHHHHHHHHhc
Confidence 665555555444444332 345677788888889999999999888876 3466666555544 444455556677
Q ss_pred CChhhhhhcCCcHHHHHHHHHHHhCccchHHHHHHHHHHhhccccCCcchHHhhhhhhhhHHHHHHHHHHHHhcccchhH
Q 048207 179 ETPNSIIQRTNDHQKAEKMLQRVHGTADVQAELEDLIRASSDSKNINHPFKKIIQRKYRPQLVMAILIPFFQQVTGVNII 258 (466)
Q Consensus 179 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (466)
|+++.. ++ .++.+ .++++.......+..+.+..+....................
T Consensus 190 ~~~~~~---~~-~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
T d1pv7a_ 190 DAPSSA---TV-ANAVG----------------------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQF 243 (417)
T ss_dssp CSCSSS---CS-SHHHH----------------------SCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccch---hh-hhhhh----------------------hhcccccccccccccccccccchhhhhHHHHHHHHhhhccc
Confidence 766421 11 11100 00111111112222222222222222222222111111111
Q ss_pred HhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCccc
Q 048207 259 SFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFSI 338 (466)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (466)
..+.+...++.+.+..... .......++..++..+.+++.||.++|+.+..+..+..++.+.+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------- 309 (417)
T d1pv7a_ 244 ANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------- 309 (417)
T ss_dssp HHHHTTSSSCHHHHHHHHH-HHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred cccccccccccccchhhhc-ccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------------
Confidence 1111111122233333344 66677788889999999999999999999988887777776665532
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHH-HHHHHHHHHHHHHHHHHHhhcccceeh-hhHHH
Q 048207 339 GYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITV-AVGLLFTSLVAQTFLAMLCHFKAGVFF-FFGGW 416 (466)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 416 (466)
++.+.......+.+.+.+....+. ..+..|.+|++.|+++.|+.. ....++..++|.+.|.+.|..|+...+ ..+++
T Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~ 388 (417)
T d1pv7a_ 310 TSALEVVILKTLHMFEVPFLLVGC-FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHH-HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 334455555556666665555444 566689999999999999865 456789999999999999999865544 44444
Q ss_pred HHHHHHhhheecccCCCCCHH
Q 048207 417 LTVMTTFVHFFLPETKNVPIE 437 (466)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~ 437 (466)
+.+..++..+.++++++.+.+
T Consensus 389 ~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 389 ALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHHHHhhcCCCccchh
Confidence 555555555666655555443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=6.6e-14 Score=131.03 Aligned_cols=162 Identities=13% Similarity=0.094 Sum_probs=117.1
Q ss_pred HHhhHHHHHhhhCCCcchhhHHHHHHHHHHHHHhhhhhhhhhhhcCCeeeehhhhHHHHHHHHHHHHHHHhhcCCCCCcc
Q 048207 258 ISFYAPVLFRTIKLSENTSLLMSALVTGGIGTVSAILPMILADKLGRKVLFLLGGIQMLVSQVMIGSIMAAQLGDHGGFS 337 (466)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
+....|. +++.|.+..+.+ +..+...++..++.++.|+++||+|||+.+.++.++..++.++.+......
T Consensus 44 ~~~~~p~-~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-------- 113 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-------- 113 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred HHHHHHH-HHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh--------
Confidence 4444454 466899999998 899999999999999999999999999999999888888877776543211
Q ss_pred chhhHHHHHHHHHHHHhhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cceehhh-HH
Q 048207 338 IGYAYLILVLICVYKAGFGFSWGPLGWLVPSEIFPLEIRSAGQSITVAVGLLFTSLVAQTFLAMLCHFK-AGVFFFF-GG 415 (466)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~ 415 (466)
...+..++..++.+.+.+....+. ..++.|.+|+++|+.++++.+....+|..+++.+.+...+..+ +...+.. ..
T Consensus 114 -~~~~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~ 191 (447)
T d1pw4a_ 114 -SSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 191 (447)
T ss_dssp -SSSSHHHHHHHHHHHHHHHTHHHH-HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred -hhHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhh
Confidence 223444555555555555554444 5566899999999999999999999999999988887777654 4444443 44
Q ss_pred HHHHHHHhhheecccC
Q 048207 416 WLTVMTTFVHFFLPET 431 (466)
Q Consensus 416 ~~~~~~~~~~~~~~~~ 431 (466)
+..+..++.+...++.
T Consensus 192 ~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 192 CAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHCCCS
T ss_pred hHHHHHHHHHHhcccc
Confidence 4444444444444443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=2.1e-13 Score=125.74 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=130.2
Q ss_pred cccccCCcchhHHHHHhhhHHHHHHHHhHHhhhhhhcchHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHhhhhhhhhh
Q 048207 27 SDYCKFDSQLLTSLTSSLYITGILASLIASSVTRALGGKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIDFGN 106 (466)
Q Consensus 27 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 106 (466)
.++.+.+....+...+...++..++..+.+++.||+|||+.+.++..+.+++.++..+.++.+.+++..++.|++.+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHH
Confidence 44555677788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhcCCCcccCchhhHH-HHHHHHHHHHHHHHhhhhcccCCCcchHHHHHhhhHHHHHHHHHhhc
Q 048207 107 QSVPLYLSEMAPPKCRGAFNIGF-QVCVATGILSANLLNYGTQKIKGGWGWKISLAMAAAPASILTIGSLF 176 (466)
Q Consensus 107 ~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 176 (466)
+...+++.|.+|+++|++..++. +....+|..++|.+++.+.+. .||+..|++.+++.++..++..+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999975 567789999999999988875 45999999888777766555444
|