Citrus Sinensis ID: 048296

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MPKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDKFIEDEIVSDIHSSSSSKEAIKENDCVTELTGEEKSEEEDMHKEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKDFL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEcccccEEEcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccc
Coil and Loop (DISEMBL)
mpkkkpkgtgrkkIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIivfspkgrlysfgdhvidkfiedeivsdihssssskeaikendcvteltgeekseeeDMHKEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKDFL
Flexible Loop (DISEMBL)
mpkkkpkgtgrkkieikriennssrkvafskrrkgmfKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDKFIEDEIVSdihssssskeaikendCVTELTgeekseeedmhKEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKDFL
Low Complexity Region (SEG)
MpkkkpkgtgrkkIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDKFiedeivsdihssssskeaikeNDCVTeltgeekseeedmhkeQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKDFL
Disordered region (IsUnstruct)
************************************FKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDKFIEDEIVS**************************************LEFWWEQSIEDLNMEELEKYKSCLEELR**V******************
Disordered Region (DISOPRED)
***************IKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDKFIEDE*******************************************FWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEK***
Disordered Region (DISEMBL)
************KIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDKFIEDEIVSD************ENDCVT*****************TELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKDFL
Disordered Region (DISPRO)
*************IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDKFIEDEIVSDIHSSSSSKEAIKENDCVTELTGEEKSEEEDMHKEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDKFIEDEIVSDIHSSSSSKEAIKENDCVTELTGEEKSEEEDMHKEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKDFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q9FKK2	299	Agamous-like MADS-box pro	no	no	0.868	0.484	0.382	3e-23
Q4PSU4	264	Agamous-like MADS-box pro	no	no	0.844	0.534	0.397	3e-22
Q6VAM4	159	MADS-box transcription fa	yes	no	0.850	0.893	0.375	1e-17
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.850	0.591	0.375	2e-17
Q7XUN2	249	MADS-box transcription fa	no	no	0.610	0.409	0.423	3e-17
Q40872	242	Floral homeotic protein A	N/A	no	0.520	0.359	0.489	8e-17
Q01540	252	Floral homeotic protein A	N/A	no	0.514	0.341	0.483	8e-17
Q40885	242	Floral homeotic protein A	N/A	no	0.520	0.359	0.489	8e-17
Q43585	248	Floral homeotic protein A	N/A	no	0.520	0.350	0.489	9e-17
Q38836	230	Agamous-like MADS-box pro	no	no	0.395	0.286	0.590	1e-16

>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 17/162 (10%)

Query: 7   KGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG 66
           K  GR+KIE+ +++N S+ +V FSKRR G+FKKASELC LC  E+AI+VFSP  +++SFG
Sbjct: 4   KSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFG 63

Query: 67  ----DHVIDKFIEDEIVSDIHSSSSSKEAIKENDCVTELTGE----------EKSEEEDM 112
               D VID+FI +  +     ++      + N  V +L             EK + +++
Sbjct: 64  HPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDEL 123

Query: 113 HK--EQTE-LEFWWEQSIEDLNMEELEKYKSCLEELRSNVAM 151
            K  E+T+ L  WWE  +E+L + +LE +K  LE L+  V +
Sbjct: 124 KKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTV 165

Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 90/156 (57%), Gaps = 15/156 (9%)

Query: 10  GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG--- 66
           GR+KI + +I+  S R+V FSKRR G+FKKASELC LC  EI IIVFSP  + +SFG   
Sbjct: 63  GRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPS 122

Query: 67  -DHVIDKFIEDEIVSDIHS---SSSSKEAIKENDCVTELTGEEKSEE------EDMHKEQ 116
            + V+D+++    +S   S     S   + + N  +T +  E + E+      E+M KE 
Sbjct: 123 VESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKES 182

Query: 117 TELEF--WWEQSIEDLNMEELEKYKSCLEELRSNVA 150
                  WWE+ +E++NM +L++ K  LEELR  V 
Sbjct: 183 VRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVV 218

Probable transcription factor. Controls central cell differentiation during female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 10/152 (6%)

Query: 10  GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHV 69
           GR KIEIKRI+N +SR+V FSKRR G+FKKA EL  LCD E+ ++VFS   RLY F    
Sbjct: 2   GRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSS 61

Query: 70  IDKFIE--DEIVSDIHSS-SSSKEAIKENDCVTELTGEEKSEEEDMHKEQTELEFWWEQS 126
           +   IE  +E   D H + ++S EA            E  S  + +H  Q        Q 
Sbjct: 62  MKSIIERYNETKEDPHQTMNASSEA-------KLWQQEAASLRQQLHNLQEYHRQLLGQQ 114

Query: 127 IEDLNMEELEKYKSCLEELRSNVAMKVEEMVM 158
           +  L++E+L+  +S LE    N+ ++ + ++M
Sbjct: 115 LSGLDVEDLQNLESKLEMSLKNIRLRKDNVMM 146

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 10/152 (6%)

Query: 10  GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHV 69
           GR KI IKRI N++SR+V FSKRR G+ KKA EL  LCD E+ +I+FS  GRLY F    
Sbjct: 2   GRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSSS 61

Query: 70  IDKFIEDEIVSDIHSSSSSKEAIKENDCVTELTGEEKSE---EEDMHKEQTELEFWWEQS 126
           +   IE    SD    +SS     END  +E+   +K     +  +H  Q        + 
Sbjct: 62  MKSVIER--YSDAKGETSS-----ENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEE 114

Query: 127 IEDLNMEELEKYKSCLEELRSNVAMKVEEMVM 158
           +  L++E L+  ++ LE     V MK ++M++
Sbjct: 115 LSGLSVEALQNLENQLELSLRGVRMKKDQMLI 146

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 9/111 (8%)

Query: 10  GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHV 69
           GR ++E+KRIEN  +R+V FSKRR G+ KKA EL  LCD E+A+I+FS +G+LY FG   
Sbjct: 2   GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61

Query: 70  IDKFIEDEIVSDIHSSSSSKEAIKENDCVTELTGEEKSEEEDMHKEQTELE 120
           I+K +E +  S  +++  S  A+          GE +S  ++M + +T+LE
Sbjct: 62  INKTLE-KYNSCCYNAQGSNSALA--------GGEHQSWYQEMSRLKTKLE 103

Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40872|AG_PANGI Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 5/92 (5%)

Query: 2   PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGR 61
           P++K    GR KIEIKRIEN ++R+V F KRR G+ KKA EL  LCD E+A+IVFS +GR
Sbjct: 13  PQRK---LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGR 69

Query: 62  LYSFGDHVIDKFIE--DEIVSDIHSSSSSKEA 91
           LY + ++ +   IE   +  +D  ++SS  EA
Sbjct: 70  LYEYANNSVKGTIERYKKACTDSPNTSSVSEA 101

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Panax ginseng (taxid: 4054)

>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 5/91 (5%)

Query: 2   PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGR 61
           P++K    GR KIEIKRIEN ++R+V F KRR G+ KKA EL  LCD E+A+IVFS +GR
Sbjct: 13  PQRK---AGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 69

Query: 62  LYSFGDHVIDKFIE--DEIVSDIHSSSSSKE 90
           LY + ++ +   IE   + +SD  ++ S  E
Sbjct: 70  LYEYSNNSVKGTIERYKKAISDNSNTGSVAE 100

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Brassica napus (taxid: 3708)

>sp|Q40885|AG_PETHY Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 5/92 (5%)

Query: 2   PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGR 61
           P++K    GR KIEIKRIEN ++R+V F KRR G+ KKA EL  LCD E+A+IVFS +GR
Sbjct: 13  PQRK---LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 69

Query: 62  LYSFGDHVIDKFIE--DEIVSDIHSSSSSKEA 91
           LY + ++ +   IE   +  SD  ++ S  EA
Sbjct: 70  LYEYANNSVKATIERYKKACSDSSNTGSIAEA 101

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Petunia hybrida (taxid: 4102)

>sp|Q43585|AG_TOBAC Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 5/92 (5%)

Query: 2   PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGR 61
           P++K    GR KIEIKRIEN ++R+V F KRR G+ KKA EL  LCD E+A+IVFS +GR
Sbjct: 13  PQRK---LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 69

Query: 62  LYSFGDHVIDKFIE--DEIVSDIHSSSSSKEA 91
           LY + ++ +   IE   +  SD  ++ S  EA
Sbjct: 70  LYEYANNSVKATIERYKKACSDSSNTGSISEA 101

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Nicotiana tabacum (taxid: 4097)

>sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 50/66 (75%)

Query: 10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHV 69
          GR KIEIKRIEN+++R+V F KRR G+ KKA EL  LCD E+A+IVFS +GRLY + ++ 
Sbjct: 2  GRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNN 61

Query: 70 IDKFIE 75
          I   IE
Sbjct: 62 IRSTIE 67

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
225463450	222	PREDICTED: agamous-like MADS-box protein	0.898	0.675	0.427	2e-26
356574339	239	PREDICTED: agamous-like MADS-box protein	0.862	0.602	0.363	7e-25
224113269	170	predicted protein [Populus trichocarpa]	0.874	0.858	0.443	1e-24
359483542	223	PREDICTED: agamous-like MADS-box protein	0.850	0.636	0.426	1e-24
357448597	237	Agamous-like MADS-box protein AGL11 [Med	0.910	0.641	0.386	1e-24
449465111	228	PREDICTED: agamous-like MADS-box protein	0.952	0.697	0.352	2e-24
297736394	224	unnamed protein product [Vitis vinifera]	0.982	0.732	0.366	3e-24
225429169	212	PREDICTED: agamous-like MADS-box protein	0.982	0.773	0.366	3e-24
357436991	237	MADS-box transcription factor [Medicago	0.958	0.675	0.350	4e-24
357515637	237	MADS-box transcription factor [Medicago	0.952	0.670	0.382	6e-24

>gi|225463450|ref|XP_002272654.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 90/152 (59%), Gaps = 2/152 (1%)

Query: 7   KGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG 66
           K TGRKKIEI++IE  SS +V FSKRR G+FKKA ELC LC  E A+IVFSP GR + FG
Sbjct: 10  KNTGRKKIEIRKIEKKSSLEVTFSKRRAGLFKKAGELCVLCGAEAAVIVFSPGGRAFVFG 69

Query: 67  DHVIDKFIEDEIVSDIHSSSSSKEAIKENDCVTELTGEEKSEEEDMHKEQTELEFWWEQS 126
               D  I+  +  D  + +SS+  +     V      +  E     + + E  FWW+  
Sbjct: 70  HPTADAVIDHFLGRD--TDTSSRGVVPAEQVVHGQVQRQYLEAVGRAEVKEEGGFWWDAP 127

Query: 127 IEDLNMEELEKYKSCLEELRSNVAMKVEEMVM 158
           IE++ + ELE++K  LE+LR  VA +V E+ +
Sbjct: 128 IENMGLNELEQFKGSLEKLREKVADRVAEITL 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574339|ref|XP_003555306.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Glycine max]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 102/154 (66%), Gaps = 10/154 (6%)

Query: 7   KGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG 66
           K  GR+KIE+K++ N S+ +V FSKRR G+FKKASELC LC  ++A+IVFSP  +++SFG
Sbjct: 6   KSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSFG 65

Query: 67  ----DHVIDKFIEDEIVSDIHSSSSSKEAIKE-NDCVTELT-----GEEKSEEEDMHKEQ 116
               D VID+++E    ++    +     +++ N  +T+++     G +++EE ++ K++
Sbjct: 66  HPNVDAVIDRYLERAPPTESFMEAHRMAHVRDLNAQLTQISNHLDAGRKRAEELNLMKKE 125

Query: 117 TELEFWWEQSIEDLNMEELEKYKSCLEELRSNVA 150
            +   WW + ++ ++M +++++K+ LEEL+  VA
Sbjct: 126 AQAHLWWARPVDGMSMAQMKQFKAALEELKKQVA 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113269|ref|XP_002332612.1| predicted protein [Populus trichocarpa] gi|222832813|gb|EEE71290.1| predicted protein [Populus trichocarpa]

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 105/167 (62%), Gaps = 21/167 (12%)

Query: 8   GTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCD-TEIAIIVFSPKGRLYSFG 66
           GTGRKK+E+K+IE+ SS  V F KRR G+FKKASE C L D   +AI+V SP  R YSFG
Sbjct: 14  GTGRKKVEMKKIESKSSLIVTFCKRRNGLFKKASEFCNLYDDASLAIVVLSPNQRPYSFG 73

Query: 67  ----DHVIDKFIEDEIVSDIHSSSSSKEAIKEN--DCVTELTGEEKSEEEDMHKEQTELE 120
               + V+D+++ D+  S+ ++ S S++   +N  DC             D   E+ E  
Sbjct: 74  HPDVNTVVDQYLGDQESSERNNISCSEDTRGKNNMDC-------------DNINEEGE-G 119

Query: 121 FWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKDFL 167
            WWE+S+ED+N+EELEK+++ LE L++NVAM+V E    R   +DFL
Sbjct: 120 CWWERSVEDMNLEELEKFRASLETLKNNVAMRVREERRTRVSTRDFL 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483542|ref|XP_002264830.2| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 91/157 (57%), Gaps = 15/157 (9%)

Query: 7   KGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG 66
           K  GR+KIEI++IE  +S  V FSKRR G+FKKA ELC LC  E A+IVFSP GR + FG
Sbjct: 10  KNMGRQKIEIRKIEKKNSLLVTFSKRRTGLFKKAGELCVLCGVEAAVIVFSPAGRAFVFG 69

Query: 67  ----DHVIDKFIEDEIVSDIHSSSSSKEAIKENDC---VTELTGEEKSEEEDMHKEQTEL 119
               D VID+F+  +    I  +    E +          E  G  ++++E       E 
Sbjct: 70  HPTADAVIDRFLGRD-TGTISRAVVPAEQVVHGQVQRQYLEPVGRAEAKKE-------EG 121

Query: 120 EFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEM 156
            FWW+  IE++ + ELE++K  LE+LR  VA +VEEM
Sbjct: 122 GFWWDAPIENMGLNELEQFKGSLEKLRKKVADRVEEM 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448597|ref|XP_003594574.1| Agamous-like MADS-box protein AGL11 [Medicago truncatula] gi|355483622|gb|AES64825.1| Agamous-like MADS-box protein AGL11 [Medicago truncatula]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 16/168 (9%)

Query: 7   KGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG 66
           K  GR+KIE+K+I N S+ +V FSKRR G+FKKASELC LC  ++A++VFSP+ +++SFG
Sbjct: 6   KSQGRQKIEMKKITNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPREKVFSFG 65

Query: 67  ----DHVIDKFIEDEIVSD--------IHSSSSSKEAIKENDCVTELTGEEKSEEE---D 111
               D VID+++      +         H S+S  E   +   + +L   EK   E   +
Sbjct: 66  HPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSASVCELNIQVTQINQLLDIEKKRAEELSN 125

Query: 112 MHKEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMR 159
           +HK  TE +FWW   ++ +N  +LE +K  L+EL+  VA  V+ +V++
Sbjct: 126 LHKA-TETQFWWAGPVDGMNRAQLELFKKALDELKKLVAHHVDRLVIQ 172

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465111|ref|XP_004150272.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus] gi|449484412|ref|XP_004156875.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 103/173 (59%), Gaps = 14/173 (8%)

Query: 7   KGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG 66
           K  GR+K+E+ ++ N S+ +V FSKRR G+FKKASELC LC  EIAIIVFSP  +++SFG
Sbjct: 3   KSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFG 62

Query: 67  DHVIDKFIEDEIVSDIHSSSSSKEAIK--ENDCVTELTGE------------EKSEEEDM 112
              ++  IE  +  +   SS + + I+   N  V EL  +            ++ EE + 
Sbjct: 63  HPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNK 122

Query: 113 HKEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKD 165
            ++ ++ + WWE  IE++ M +LE+ K+ L+EL+ NV  + + ++++ +   +
Sbjct: 123 LRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNAN 175

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736394|emb|CBI25117.3| unnamed protein product [Vitis vinifera]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 105/180 (58%), Gaps = 16/180 (8%)

Query: 2   PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGR 61
           P +K KG  R+K+E+ ++   S+ +V FSKRR G+FKKASELC LC  EIAIIVFSP  +
Sbjct: 3   PTRKSKG--RQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKK 60

Query: 62  LYSFG----DHVIDKFIEDEIVS--------DIHSSSSSKEA-IKENDCVTELTGEEK-S 107
           +YSFG    + +ID+F+    +         + H S++ ++  ++    + +L GE+K  
Sbjct: 61  MYSFGHPGVESIIDRFLTGNPLPHSGALQLFEAHRSANVRDLNMQLTQVLNQLEGEKKRG 120

Query: 108 EEEDMHKEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKDFL 167
           E     K+ ++ ++WW   IE+L+ E+LE  K  LE L+ NV M  ++ +M  +    F 
Sbjct: 121 EALTQMKKASQAQYWWAAPIEELSFEQLELLKVSLENLKRNVEMHADKHMMEASNPLTFF 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429169|ref|XP_002271290.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 105/180 (58%), Gaps = 16/180 (8%)

Query: 2   PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGR 61
           P +K KG  R+K+E+ ++   S+ +V FSKRR G+FKKASELC LC  EIAIIVFSP  +
Sbjct: 3   PTRKSKG--RQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKK 60

Query: 62  LYSFG----DHVIDKFIEDEIVS--------DIHSSSSSKEA-IKENDCVTELTGEEK-S 107
           +YSFG    + +ID+F+    +         + H S++ ++  ++    + +L GE+K  
Sbjct: 61  MYSFGHPGVESIIDRFLTGNPLPHSGALQLFEAHRSANVRDLNMQLTQVLNQLEGEKKRG 120

Query: 108 EEEDMHKEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKDFL 167
           E     K+ ++ ++WW   IE+L+ E+LE  K  LE L+ NV M  ++ +M  +    F 
Sbjct: 121 EALTQMKKASQAQYWWAAPIEELSFEQLELLKVSLENLKRNVEMHADKHMMEASNPLTFF 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436991|ref|XP_003588771.1| MADS-box transcription factor [Medicago truncatula] gi|355477819|gb|AES59022.1| MADS-box transcription factor [Medicago truncatula]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 102/174 (58%), Gaps = 14/174 (8%)

Query: 7   KGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG 66
           K  GR+KIE+K++ N S+ +V FSKRR G+FKKASELC LC  ++A+I+FSP  +++SFG
Sbjct: 6   KSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIIFSPGEKVFSFG 65

Query: 67  ----DHVIDKFIEDEIVSD--------IHSSSSSKEAIKENDCVTELTGEEKSEEEDMH- 113
               D VID ++    + +         H S++ +E   +   + +L   EK  +E++  
Sbjct: 66  QPNVDTVIDHYLSRVPLKNNGTMQFIEAHRSANVRELNIQLTQINQLLDNEKKRDEELSH 125

Query: 114 -KEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKDF 166
            ++  E +FWW  S++ +N  +LE +K  LEE++  VA     +V++    + F
Sbjct: 126 LRKANETQFWWAGSVDGMNRAQLEVFKKALEEIKKLVAHHANRLVIQAAPTQTF 179

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515637|ref|XP_003628107.1| MADS-box transcription factor [Medicago truncatula] gi|355522129|gb|AET02583.1| MADS-box transcription factor [Medicago truncatula]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 101/175 (57%), Gaps = 16/175 (9%)

Query: 7   KGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG 66
           K  GR+KIE+K++ N S+ +V FSKRR G+FKKASELC LC  ++A++VFSP  +++SFG
Sbjct: 6   KSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFG 65

Query: 67  DHVIDKFIEDEIVSDIHSSSSSKEAIKE-----NDC--VTELTG-------EEKSEEEDM 112
              ID  I D  +S +   ++      E     N C   T+LT        E+K  EE  
Sbjct: 66  QPNIDTVI-DRYLSRVPPQNNGTMQFIEAHRNANVCELNTQLTQINQLLDMEKKRAEELS 124

Query: 113 H-KEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKDF 166
           H ++ TE +FWW   ++ +NM +LE +K  LEE +  VA   + +V++    + F
Sbjct: 125 HLRKATEAQFWWAGPVDGMNMAQLEFFKKALEETKKVVAHHADRLVIQGAPTQTF 179

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2025386	247	AGL28 "AGAMOUS-like 28" [Arabi	0.353	0.238	0.610	4.5e-20
TAIR|locus:2175188	299	AGL62 "AGAMOUS-like 62" [Arabi	0.359	0.200	0.562	6.7e-20
TAIR|locus:2195798	217	AT1G17310 [Arabidopsis thalian	0.359	0.276	0.532	7.3e-20
TAIR|locus:2193922	224	AT1G72350 [Arabidopsis thalian	0.359	0.267	0.548	1.5e-19
TAIR|locus:2047304	264	AGL61 "AGAMOUS-like 61" [Arabi	0.359	0.227	0.531	1.5e-19
TAIR|locus:2115420	248	AT4G36590 [Arabidopsis thalian	0.317	0.213	0.622	8.9e-18
UNIPROTKB|Q40882	228	fbp11 "Fbp11 protein" [Petunia	0.341	0.25	0.614	1.8e-17
UNIPROTKB|Q43616	225	fbp7 "Floral binding protein n	0.359	0.266	0.546	4.8e-17
UNIPROTKB|Q6Q9I2	267	MADS15 "MADS-box transcription	0.353	0.220	0.566	6e-17
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.353	0.239	0.533	9.8e-17

TAIR|locus:2025386 AGL28 "AGAMOUS-like 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query:    14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDK 72
             IE+ ++ N S+ +V FSKRR G+FKK SELC LCD EIAIIVFSP G+ YSFG   ++K
Sbjct:    11 IELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPNVNK 69

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2175188 AGL62 "AGAMOUS-like 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
 Identities = 36/64 (56%), Positives = 49/64 (76%)

Query:    14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG----DHV 69
             IE+ +++N S+ +V FSKRR G+FKKASELC LC  E+AI+VFSP  +++SFG    D V
Sbjct:    11 IEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSV 70

Query:    70 IDKF 73
             ID+F
Sbjct:    71 IDRF 74

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009960 "endosperm development" evidence=IMP

TAIR|locus:2195798 AT1G17310 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
 Identities = 33/62 (53%), Positives = 45/62 (72%)

Query:    14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG--DHVID 71
             IEIK+IE  + R+V FSKRR+G+FKK++EL  L   +IA+I FS   R+Y FG  D +ID
Sbjct:    52 IEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRFGHVDALID 111

Query:    72 KF 73
             K+
Sbjct:   112 KY 113

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2193922 AT1G72350 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 34/62 (54%), Positives = 43/62 (69%)

Query:    14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD--HVID 71
             IEIK I   + R+V FSKRR G+FKKA+EL  LC  +I II FS   R+YSFG+   +ID
Sbjct:    47 IEIKEIMLETRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFSRCDRIYSFGNVNSLID 106

Query:    72 KF 73
             K+
Sbjct:   107 KY 108

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2047304 AGL61 "AGAMOUS-like 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 34/64 (53%), Positives = 45/64 (70%)

Query:    14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG----DHV 69
             I + +I+  S R+V FSKRR G+FKKASELC LC  EI IIVFSP  + +SFG    + V
Sbjct:    67 IPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESV 126

Query:    70 IDKF 73
             +D++
Sbjct:   127 LDRY 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009559 "embryo sac central cell differentiation" evidence=IMP

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2115420 AT4G36590 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query:    14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG 66
             IE+K++EN S+ +V FSKRR G+FKKASELC L   EI +IVFSP G+++SFG
Sbjct:    11 IEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSFG 63

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q40882 fbp11 "Fbp11 protein" [Petunia x hybrida (taxid:4102)]

 Score = 179 (68.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query:    14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVI 70
             IEIKRIENN++R+V F KRR G+ KKA EL  LCD EIA+IVFS +GR+Y + ++ I
Sbjct:     6 IEIKRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRVYEYANNNI 62

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q43616 fbp7 "Floral binding protein number 7" [Petunia x hybrida (taxid:4102)]

 Score = 177 (67.4 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 35/64 (54%), Positives = 49/64 (76%)

Query:    14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDH----V 69
             IEIKRIENN++R+V F KRR G+ KKA EL  LC+ EIA+IVFS +GR+Y + ++    +
Sbjct:     6 IEIKRIENNTNRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSTRGRVYEYSNNNIRAI 65

Query:    70 IDKF 73
             ID++
Sbjct:    66 IDRY 69

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6Q9I2 MADS15 "MADS-box transcription factor 15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 177 (67.4 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
 Identities = 34/60 (56%), Positives = 45/60 (75%)

Query:    14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG-DHVIDK 72
             +++KRIEN  +R+V FSKRR G+ KKA E+  LCD E+A IVFSPKG+LY +  D  +DK
Sbjct:     6 VQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDK 65

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 175 (66.7 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query:    14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG-DHVIDK 72
             +++KRIEN  +R+V FSKRR G+ KKA+E+  LCD E+A+I+FS KG+LY +  D  +DK
Sbjct:     6 VQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDK 65

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6VAM4	MAD23_ORYSJ	No assigned EC number	0.375	0.8502	0.8930	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003424001 SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (218 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	3e-28
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	5e-27
smart00432	59	smart00432, MADS, MADS domain	1e-26
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	2e-24
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	1e-17
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	3e-11

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 99.5 bits (249), Expect = 3e-28
 Identities = 39/66 (59%), Positives = 50/66 (75%)

Query: 10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHV 69
          GR KIEIKRIEN+++R+V FSKRR G+ KKA EL  LCD E+A+I+FS  G+LY F    
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 70 IDKFIE 75
          ++K IE
Sbjct: 61 MEKIIE 66

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 96.0 bits (240), Expect = 5e-27
 Identities = 41/57 (71%), Positives = 47/57 (82%)

Query: 10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG 66
          GR KIEIKRIEN +SR+V FSKRR G+FKKASEL  LCD E+A+IVFSP G+LY F 
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFW 57

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 95.3 bits (238), Expect = 1e-26
 Identities = 39/57 (68%), Positives = 47/57 (82%)

Query: 10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG 66
          GR+KIEIKRIEN ++R+V FSKRR G+FKKA EL  LCD E+A+IVFSP G+LY F 
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFA 57

Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 90.0 bits (224), Expect = 2e-24
 Identities = 38/57 (66%), Positives = 45/57 (78%)

Query: 10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFG 66
          GRKKI+IKRIEN   R V FSKRR+G+FKKASEL  LC  E+A+IV+SP G+LY F 
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFW 57

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 72.0 bits (177), Expect = 1e-17
 Identities = 31/49 (63%), Positives = 39/49 (79%)

Query: 17 KRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSF 65
          KRIEN S+R+V FSKRR G+FKKA EL  LCD E+A+I+FS  G+LY +
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEY 49

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 60.4 bits (146), Expect = 3e-11
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query: 4   KKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLY 63
           K       +KI I  I N + R V FSKR+ G+ KKA EL  L  TE+ ++V S  G ++
Sbjct: 76  KFLISVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVH 135

Query: 64  SF 65
           +F
Sbjct: 136 TF 137

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.97
smart00432	59	MADS MADS domain.	99.96
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.81
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.36
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	98.34
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	87.63

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=1.8e-34  Score=219.63  Aligned_cols=153  Identities=39%  Similarity=0.546  Sum_probs=107.5

Q ss_pred             CCcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc------hhhhhhhhhhhhhhc
Q 048296            9 TGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD------HVIDKFIEDEIVSDI   82 (167)
Q Consensus         9 mgR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~------~Vi~ry~~~~~~~~~   82 (167)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|.||+      .|+++|...+.....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            89999999999999999999999999999999999999999999999999999999987      899999887664433


Q ss_pred             ccCcchhhhhhh--cCccccc--------------cCcccchhhhhhhhhhhHHHHHhhhhcccCH-HHHHHHHHHHHHH
Q 048296           83 HSSSSSKEAIKE--NDCVTEL--------------TGEEKSEEEDMHKEQTELEFWWEQSIEDLNM-EELEKYKSCLEEL  145 (167)
Q Consensus        83 ~~~~~~~~~~~e--l~~l~~~--------------l~~~k~~~~~l~~~~~~~~~~~~~~l~~Ls~-~eL~~L~~~Le~~  145 (167)
                      ........++..  +..+...              ........+.+...........+.++.+++. .+|..++..++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            222222222110  1111100              0111111111111001134566788888988 8999999999998


Q ss_pred             hhhhhHHHHHHHHHHh
Q 048296          146 RSNVAMKVEEMVMRRT  161 (167)
Q Consensus       146 l~~v~~R~~~L~~~~~  161 (167)
                      +..++......+.+++
T Consensus       161 ~~~~~~~~~~~~~~~~  176 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSN  176 (195)
T ss_pred             hcCCCCCCCcCCcchh
Confidence            8877776655555443

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=7.5e-33  Score=181.05  Aligned_cols=69  Identities=54%  Similarity=0.956  Sum_probs=66.2

Q ss_pred             CcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhhhhh
Q 048296           10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIEDEI   78 (167)
Q Consensus        10 gR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~~~~   78 (167)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|.|++    +|++||...+.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999999987    99999988654

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=6.4e-31  Score=162.70  Aligned_cols=58  Identities=67%  Similarity=1.154  Sum_probs=56.6

Q ss_pred             CcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc
Q 048296           10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD   67 (167)
Q Consensus        10 gR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~   67 (167)
                      ||+||+|++|+|+++|++||+||+.||||||+||||||||+||+|||||+|++|.|++
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS   58 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence            8999999999999999999999999999999999999999999999999999999875

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=1.4e-30  Score=172.66  Aligned_cols=70  Identities=59%  Similarity=0.931  Sum_probs=65.6

Q ss_pred             CcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc-----hhhhhhhhhhhh
Q 048296           10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD-----HVIDKFIEDEIV   79 (167)
Q Consensus        10 gR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~-----~Vi~ry~~~~~~   79 (167)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+++.|++     +++++|...+..
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSAL   75 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHh
Confidence            7999999999999999999999999999999999999999999999999999888876     789999886663

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=1.7e-30  Score=160.92  Aligned_cols=58  Identities=71%  Similarity=1.130  Sum_probs=56.6

Q ss_pred             CcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc
Q 048296           10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD   67 (167)
Q Consensus        10 gR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~   67 (167)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+++.|++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS   58 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence            7999999999999999999999999999999999999999999999999999999975

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=3.2e-29  Score=150.32  Aligned_cols=51  Identities=67%  Similarity=1.121  Sum_probs=46.8

Q ss_pred             EeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc
Q 048296           17 KRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD   67 (167)
Q Consensus        17 ~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~   67 (167)
                      ++|+|++.|++||+||+.||||||+||||||||+||+|||||+|++|+|++
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            579999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.81  E-value=8.7e-21  Score=148.87  Aligned_cols=78  Identities=37%  Similarity=0.556  Sum_probs=71.0

Q ss_pred             CCCCCCCCCCcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc-------------
Q 048296            1 MPKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD-------------   67 (167)
Q Consensus         1 ~~~~~~~~mgR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~-------------   67 (167)
                      |..++|++.||+||+|.||+|...|.+||+|||.||||||+|||||+|.+|-++|.|.+|-||+|..             
T Consensus        54 ~~~~~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk  133 (338)
T KOG0015|consen   54 QKDGGKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGK  133 (338)
T ss_pred             ccCCCccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhH
Confidence            3456888899999999999999999999999999999999999999999999999999999999976             


Q ss_pred             hhhhhhhhhhh
Q 048296           68 HVIDKFIEDEI   78 (167)
Q Consensus        68 ~Vi~ry~~~~~   78 (167)
                      .+|...++.+.
T Consensus       134 ~lIq~cLn~pd  144 (338)
T KOG0015|consen  134 ALIQACLNAPD  144 (338)
T ss_pred             HHHHHHhcCCC
Confidence            67777776655

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.36  E-value=2.4e-13  Score=111.50  Aligned_cols=60  Identities=40%  Similarity=0.568  Sum_probs=58.5

Q ss_pred             CCCcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc
Q 048296            8 GTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD   67 (167)
Q Consensus         8 ~mgR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~   67 (167)
                      +|||+|+.|.+|+|+.+|.+||+||+.||+|||.||++|.|.+|.++|.|.+|.++.|..
T Consensus        80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~t  139 (412)
T COG5068          80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT  139 (412)
T ss_pred             ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecC
Confidence            689999999999999999999999999999999999999999999999999999999976

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=98.34  E-value=2.3e-07  Score=63.45  Aligned_cols=67  Identities=19%  Similarity=0.344  Sum_probs=56.0

Q ss_pred             cCccccccCcccchhhhhhhhhhhHHHHHhhhhcccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 048296           95 NDCVTELTGEEKSEEEDMHKEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEK  164 (167)
Q Consensus        95 l~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~l~~Ls~~eL~~L~~~Le~~l~~v~~R~~~L~~~~~~~~  164 (167)
                      ++.+..++..++..++.++   ...+++.|++|++||++||..|+..|+..+..|+.|+.+++.+++...
T Consensus        14 ~e~~~~e~~~L~~~~~~L~---~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l   80 (100)
T PF01486_consen   14 HEELQQEIAKLRKENESLQ---KELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEEL   80 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4445556666666777776   344778899999999999999999999999999999999999998764

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=87.63  E-value=1.5  Score=26.93  Aligned_cols=47  Identities=17%  Similarity=0.205  Sum_probs=31.6

Q ss_pred             HHHhhhhcccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccC
Q 048296          121 FWWEQSIEDLNMEELEKYKSCLEELRSNVAMKVEEMVMRRTCEKDFL  167 (167)
Q Consensus       121 ~~~~~~l~~Ls~~eL~~L~~~Le~~l~~v~~R~~~L~~~~~~~~~~~  167 (167)
                      +..|.+|+.||++||.+--..|+.-..+++.-+..-.........||
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAealF   58 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIAKKSASRAAAEALF   58 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34678999999999998888877766666555554444433333333

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		5e-09
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		7e-09
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		8e-09
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		8e-09
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		8e-09
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		3e-08
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		6e-08
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		3e-05
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		4e-05

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDK 72
          I+I RI +  +R+V F+KR+ G+ KKA EL  LCD EIA+I+F+   RL+ +    +D+
Sbjct: 6  IQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDR 64

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDK 72
          I+I RI +  +R+V F+KR+ G+ KKA EL  LCD EIA+I+F+   RL+ +    +D+
Sbjct: 5  IQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDR 63

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDK 72
          I+I RI +  +R+V F+KR+ G+ KKA EL  LCD EIA+I+F+   +L+ +    +DK
Sbjct: 5  IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDK 63

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDK 72
          I+I RI +  +R+V F+KR+ G+ KKA EL  LCD EIA+I+F+   +L+ +    +DK
Sbjct: 5  IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDK 63

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDK 72
          I+I RI +  +R+V F+KR+ G+ KKA EL  LCD EIA+I+F+   +L+ +    +DK
Sbjct: 5  IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDK 63

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHVIDK 72
          I+I RI +  +R+V F+KR+ G+ KKA EL  L D EIA+I+F+   +L+ +    +DK
Sbjct: 5  IQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTDMDK 63

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSF 65
          IEIK IEN + R V FSKR+ G+ KKA EL  L  T++ ++V S  G +Y+F
Sbjct: 21 IEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF 72

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSF 65
          I+++ I+N   R   FSKR+ G+ KKA EL  L  T++ ++V S  G +Y+F
Sbjct: 15 IKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 66

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 14 IEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSF 65
          I+++ I+N   R   FSKR+ G+ KKA EL  L  T++ ++V S  G +Y+F
Sbjct: 14 IKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 65
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
1hbx_A	92	SRF, serum response factor; gene regulation, trans	1e-28
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-28
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	6e-27
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	2e-25
1egw_A	77	MADS box transcription enhancer factor 2, polypept	2e-25
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  100 bits (251), Expect = 1e-28
 Identities = 27/74 (36%), Positives = 40/74 (54%)

Query: 2  PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGR 61
           K   K  GR KI+++ I+N   R   FSKR+ G+ KKA EL  L  T++ ++V S  G 
Sbjct: 3  AKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH 62

Query: 62 LYSFGDHVIDKFIE 75
          +Y+F    +   I 
Sbjct: 63 VYTFATRKLQPMIT 76

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  100 bits (250), Expect = 2e-28
 Identities = 27/74 (36%), Positives = 40/74 (54%)

Query: 2  PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGR 61
           K   K  GR KI+++ I+N   R   FSKR+ G+ KKA EL  L  T++ ++V S  G 
Sbjct: 2  AKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGH 61

Query: 62 LYSFGDHVIDKFIE 75
          +Y+F    +   I 
Sbjct: 62 VYTFATRKLQPMIT 75

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 96.5 bits (240), Expect = 6e-27
 Identities = 29/74 (39%), Positives = 42/74 (56%)

Query: 2  PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGR 61
          P    +   R+KIEIK IEN + R V FSKR+ G+ KKA EL  L  T++ ++V S  G 
Sbjct: 9  PTNNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGL 68

Query: 62 LYSFGDHVIDKFIE 75
          +Y+F     +  + 
Sbjct: 69 VYTFSTPKFEPIVT 82

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 92.5 bits (230), Expect = 2e-25
 Identities = 30/66 (45%), Positives = 45/66 (68%)

Query: 10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHV 69
          GRKKI+I RI +  +R+V F+KR+ G+ KKA EL  LCD EIA+I+F+   +L+ +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 70 IDKFIE 75
          +DK + 
Sbjct: 61 MDKVLL 66

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 91.7 bits (228), Expect = 2e-25
 Identities = 30/66 (45%), Positives = 45/66 (68%)

Query: 10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHV 69
          GRKKI+I RI +  +R+V F+KR+ G+ KKA EL  LCD EIA+I+F+   +L+ +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 70 IDKFIE 75
          +DK + 
Sbjct: 61 MDKVLL 66

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 18/130 (13%)

Query: 44  CRLC----DTEIAIIVFSPKGRLYSFGDHVIDKFIEDEIVS------DIHSSSSSKEAIK 93
           C++       ++   + S     +   DH       DE+ S      D       +E + 
Sbjct: 266 CKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 94  ENDCVTELTGEEKSEEEDM-----HKEQTELEFWWEQSIEDLNMEELEKYKSCLEELRSN 148
            N     +  E   +         H    +L    E S+  L   E  K    L     +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 149 VAMKVEEMVM 158
               +  +++
Sbjct: 385 A--HIPTILL 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.9 bits (87), Expect = 8e-04
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 24/134 (17%)

Query: 37  FKKASELCR--LCDTEIAIIVFSP--KGRLY-------SFGDHVIDKFIEDEIVSDIHSS 85
            K   ++ +  L   EI  I+ S               S  + ++ KF+E+ +  +    
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--- 91

Query: 86  SSSKEAIKENDCVTELTGEEKSEEEDMHKEQTELEFWWEQSIEDLNMEELEKY---KSCL 142
                 IK           + S    M+ EQ +  +   Q     N+  L+ Y   +  L
Sbjct: 92  KFLMSPIKTEQ-------RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 143 EELRSNVAMKVEEM 156
            ELR    + ++ +
Sbjct: 145 LELRPAKNVLIDGV 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=7.6e-37  Score=203.25  Aligned_cols=73  Identities=37%  Similarity=0.557  Sum_probs=67.4

Q ss_pred             CCCCCCCCcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhh
Q 048296            3 KKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIE   75 (167)
Q Consensus         3 ~~~~~~mgR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~   75 (167)
                      +++|++|||+||+|++|+|+++|++||+|||.||||||+||||||||+||+|||||+|++|.|++    +||++|..
T Consensus         4 ~~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G   80 (92)
T 1hbx_A            4 KPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   80 (92)
T ss_dssp             --CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred             CcCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence            57889999999999999999999999999999999999999999999999999999999999998    77776644

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.1e-36  Score=197.06  Aligned_cols=69  Identities=45%  Similarity=0.790  Sum_probs=65.4

Q ss_pred             CcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhhhhh
Q 048296           10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIEDEI   78 (167)
Q Consensus        10 gR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~~~~   78 (167)
                      ||+||+|++|+|+++|++||+|||+||||||+||||||||+||+|||||+|++|+|++    .|++||...++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999999998    99999987554

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=2.5e-36  Score=203.20  Aligned_cols=76  Identities=38%  Similarity=0.614  Sum_probs=66.9

Q ss_pred             CCCCCCCCCcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhhhh
Q 048296            2 PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIEDE   77 (167)
Q Consensus         2 ~~~~~~~mgR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~~~   77 (167)
                      +..++++|||+||+|++|+|+++|++||+|||.||||||+||||||||+||+|||||+|++|.|++    .|+++|....
T Consensus         9 ~~~~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~~   88 (100)
T 1mnm_A            9 PTNNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN   88 (100)
T ss_dssp             ------CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHH
T ss_pred             cCCCCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCCc
Confidence            345778999999999999999999999999999999999999999999999999999999999988    8888886543

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=3e-36  Score=204.10  Aligned_cols=72  Identities=38%  Similarity=0.572  Sum_probs=66.3

Q ss_pred             CCCCCCCCCcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhh
Q 048296            2 PKKKPKGTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKF   73 (167)
Q Consensus         2 ~~~~~~~mgR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry   73 (167)
                      .+++|++|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|.|++    +||+++
T Consensus         2 ~~~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B            2 AKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             ---CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CCCCCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            367899999999999999999999999999999999999999999999999999999999999998    777764

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=3.4e-36  Score=199.34  Aligned_cols=69  Identities=45%  Similarity=0.790  Sum_probs=66.7

Q ss_pred             CcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhhhhh
Q 048296           10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIEDEI   78 (167)
Q Consensus        10 gR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~~~~   78 (167)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||+|||||+|++|.|++    .|++||...++
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~   73 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE   73 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCS
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCc
Confidence            8999999999999999999999999999999999999999999999999999999987    99999988655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	4e-27
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	5e-27
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	4e-26

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (238), Expect = 4e-27
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query: 10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHV 69
          GR KI+++ I+N   R   FSKR+ G+ KKA EL  L  T++ ++V S  G +Y+F    
Sbjct: 3  GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 62

Query: 70 IDKFIEDEIVSDI 82
          +   I  E    +
Sbjct: 63 LQPMITSETGKAL 75

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (236), Expect = 5e-27
 Identities = 30/66 (45%), Positives = 45/66 (68%)

Query: 10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHV 69
          GRKKI+I RI +  +R+V F+KR+ G+ KKA EL  LCD EIA+I+F+   +L+ +    
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 70 IDKFIE 75
          +DK + 
Sbjct: 61 MDKVLL 66

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.8 bits (231), Expect = 4e-26
 Identities = 28/66 (42%), Positives = 40/66 (60%)

Query: 10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGDHV 69
           R+KIEIK IEN + R V FSKR+ G+ KKA EL  L  T++ ++V S  G +Y+F    
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 70 IDKFIE 75
           +  + 
Sbjct: 63 FEPIVT 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-37  Score=194.15  Aligned_cols=66  Identities=47%  Similarity=0.849  Sum_probs=64.3

Q ss_pred             CcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhh
Q 048296           10 GRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIE   75 (167)
Q Consensus        10 gR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~   75 (167)
                      ||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|++|+|++    +|++||..
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999998    99999965

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-36  Score=192.89  Aligned_cols=70  Identities=36%  Similarity=0.563  Sum_probs=66.4

Q ss_pred             CCCcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhhhh
Q 048296            8 GTGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIEDE   77 (167)
Q Consensus         8 ~mgR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~~~   77 (167)
                      ++||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|++|+|++    +|+++|....
T Consensus         1 ~~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~~~   74 (84)
T d1srsa_           1 TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKA   74 (84)
T ss_dssp             CCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHHHH
T ss_pred             CCCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999999999999999999999998    8899987543

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-35  Score=191.24  Aligned_cols=70  Identities=40%  Similarity=0.641  Sum_probs=66.9

Q ss_pred             CCcceeEEEeeccCCcceeeeeccccccccchhhhhcccccceEEEEEcCCCceeeccc----hhhhhhhhhhh
Q 048296            9 TGRKKIEIKRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSFGD----HVIDKFIEDEI   78 (167)
Q Consensus         9 mgR~ki~i~~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~ivfsp~~k~~~~~~----~Vi~ry~~~~~   78 (167)
                      .||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|++|+|++    +|+++|...+.
T Consensus         2 k~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~~~   75 (85)
T d1mnma_           2 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNL   75 (85)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHHH
T ss_pred             CCccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhcccH
Confidence            58999999999999999999999999999999999999999999999999999999998    99999987654