Citrus Sinensis ID: 048314

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
QSEQTSSTSAWIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEccccccccccHHHHHHHHHcccccccccEEEEcccccccEEEEcccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccEEHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHccccHHccccccccccEEcEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEccccEEEEEEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHcHEEEcccccccHcHccHHEEEEccccccHHHHHcccccccHHHHHHHHEEEHHHcccccccccccccccHHHHHHHHHHHHcccHHHHcccccccHHHHHHHHHHHHHHHcccHcccccHHHHHHHc
Coil and Loop (DISEMBL)
qseqtsstSAWIARSSLCTKLRNFCrsslndrnsprskSVWSCMRALMAtvnspyspsrpltlTSIVSRVSWTTDIEVSsvamrgskpsteaaldlpwDLAYIIFCSaernpywnQRVRIALDVAKGILylhdeceppilhcdikpqnilmDEFWTAKISDFGLAkllsdkgcmapecykrtpisvkadVYGYGIVLLETICCwenmeidaskpeeiiLTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWcvqdepalrpsMKCVVMML
Flexible Loop (DISEMBL)
qseqtsstsawiARSSLCTKLRNFcrsslndrnsprskSVWSCMRALMAtvnspyspsrplTLTSIVSRVSWTTDIEVssvamrgskpsteaaldlpWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECykrtpisvkadVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVglwcvqdepalrpsMKCVVMML
Low Complexity Region (SEG)
QSEQTSSTSAWIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML
Disordered region (IsUnstruct)
**********WIARSSLCTKLRNFCR*************VWSCMRALMATVNSPY***RPLTLTSIVSRVSWTTDIEVSSVA*********AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL*****C*****
Disordered Region (DISOPRED)
************ARSSLCTKLRNF****************WSCMRALM*TV*******R***LTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENM******PE*IILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML
Disordered Region (DISEMBL)
***********IARSSLCTKLRNFCRSSL***********WSCMRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML
Disordered Region (DISPRO)
*************RSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRP***CV***L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QSEQTSSTSAWIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIxxxxxxxxxxxxxxxxxxxxxVKVGLWCVQDEPALRPSMKCVVMML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q39202	832	G-type lectin S-receptor-	yes	no	0.580	0.191	0.443	1e-40
Q9XID3	829	G-type lectin S-receptor-	no	no	0.583	0.193	0.413	4e-32
Q9FLV4	872	G-type lectin S-receptor-	no	no	0.580	0.182	0.389	6e-31
Q39203	797	G-type lectin S-receptor-	no	no	0.587	0.202	0.387	5e-30
Q0WVM4	634	Probable LRR receptor-lik	no	no	0.587	0.253	0.386	8e-30
Q8RWZ5	821	G-type lectin S-receptor-	no	no	0.583	0.194	0.395	1e-29
Q8VYT3	648	Probable LRR receptor-lik	no	no	0.587	0.248	0.392	3e-29
Q93ZS4	632	Protein NSP-INTERACTING K	no	no	0.587	0.254	0.369	2e-28
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.587	0.253	0.375	3e-28
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.587	0.252	0.370	2e-27

>sp|Q39202|RLK1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 112/178 (62%), Gaps = 19/178 (10%)

Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P W  R  IA+ +A+GILYLH+EC   I+HCDIKPQNIL+DE++T +ISDFGLAKLL   
Sbjct: 626 PSWEDRKNIAVAIARGILYLHEECSEQIIHCDIKPQNILLDEYYTPRISDFGLAKLLLMN 685

Query: 169 ---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL 219
                      KG +APE ++ +PI+ K DVY YG++LLE +CC + ++++    + +IL
Sbjct: 686 QTYTLTNIRGTKGYVAPEWFRNSPITSKVDVYSYGVMLLEIVCCKKAVDLE----DNVIL 741

Query: 220 TNWVYKCFINRELNKLVRGTEV---DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
            NW Y CF    L  L         D + +E  VK+ +WC+Q+E  +RP+M+ V  ML
Sbjct: 742 INWAYDCFRQGRLEDLTEDDSEAMNDMETVERYVKIAIWCIQEEHGMRPNMRNVTQML 799

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9XID3|Y1343_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=1 SV=1

 Score =  138 bits (347), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 100/179 (55%), Gaps = 19/179 (10%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
           W  R  IAL  AKGI YLH+EC   I+HCDIKP+NIL+D+ + AK+SDFGLAKLL+ K  
Sbjct: 579 WEYRFNIALGTAKGITYLHEECRDCIVHCDIKPENILVDDNFAAKVSDFGLAKLLNPKDN 638

Query: 172 -----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                      G +APE     PI+ K+DVY YG+VLLE +    N ++ + K      +
Sbjct: 639 RYNMSSVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLELVSGKRNFDV-SEKTNHKKFS 697

Query: 221 NWVYKCFINREL-----NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
            W Y+ F           +L     VD + +  +VK   WC+Q++P  RP+M  VV ML
Sbjct: 698 IWAYEEFEKGNTKAILDTRLSEDQTVDMEQVMRMVKTSFWCIQEQPLQRPTMGKVVQML 756

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1

 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 106/177 (59%), Gaps = 18/177 (10%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----- 168
           W  R  IA+  A+GI Y H++C   I+HCDIKP+NIL+D+ +  K+SDFGLAK++     
Sbjct: 627 WRTRFEIAVATAQGIAYFHEQCRNRIIHCDIKPENILLDDNFCPKVSDFGLAKMMGREHS 686

Query: 169 -------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                    +G +APE     PI+VKADVY YG++LLE +    N+++ +   E+     
Sbjct: 687 HVVTMIRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDM-SYDAEDFFYPG 745

Query: 222 WVYKCFIN----RELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
           W YK   N    + ++K ++G   +++ ++ L KV  WC+QDE ++RPSM  VV +L
Sbjct: 746 WAYKELTNGTSLKAVDKRLQGVAEEEEVVKAL-KVAFWCIQDEVSMRPSMGEVVKLL 801

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q39203|SD22_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 OS=Arabidopsis thaliana GN=SD22 PE=1 SV=1

 Score =  131 bits (330), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 100/183 (54%), Gaps = 22/183 (12%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
           W  R RIAL  AKGI YLH+ C   I+HCDIKP+NIL+D  + AK+SDFGLAKLL     
Sbjct: 556 WETRFRIALGTAKGIAYLHEGCRDCIIHCDIKPENILLDSDYNAKVSDFGLAKLLGRDFS 615

Query: 172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDA-------SKP 214
                     G +APE     PI+ KADVY +G+ LLE I    N+ +++       ++P
Sbjct: 616 RVLATMRGTWGYVAPEWISGLPITTKADVYSFGMTLLELIGGRRNVIVNSDTLGEKETEP 675

Query: 215 EEIILTNWVYKCFINRELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVV 271
           E+     W  +  I   ++ +V      E + + +  +  V +WC+QD   +RP+M  VV
Sbjct: 676 EKWFFPPWAAREIIQGNVDSVVDSRLNGEYNTEEVTRMATVAIWCIQDNEEIRPAMGTVV 735

Query: 272 MML 274
            ML
Sbjct: 736 KML 738

Serine/threonine-protein kinase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q0WVM4|Y2239_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1

 Score =  130 bits (328), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 15/176 (8%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
           WN R +IA+  A+G+ YLH++C+P I+H D+K  NIL+DE++ A + DFGLAKLL+ +  
Sbjct: 393 WNTRKKIAIGAARGLFYLHEQCDPKIIHRDVKAANILLDEYFEAVVGDFGLAKLLNHEDS 452

Query: 172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                     G +APE       S K DV+G+GI+LLE I     +E   S  ++  +  
Sbjct: 453 HVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSVSQKGAMLE 512

Query: 222 WVYKCFINRELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
           WV K     ++ +LV    GT  D+  +  +++V L C Q  PA RP M  VV ML
Sbjct: 513 WVRKLHKEMKVEELVDRELGTTYDRIEVGEMLQVALLCTQFLPAHRPKMSEVVQML 568

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 17/177 (9%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---- 169
           W+ R  IAL  AKG+ YLH++C+  I+HCDIKP+NIL+D+ + AK+SDFGLAKL++    
Sbjct: 589 WDTRFNIALGTAKGLAYLHEDCDARIVHCDIKPENILLDDNFNAKVSDFGLAKLMTREQS 648

Query: 170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                    +G +APE      IS K+DVY YG+VLLE I   +N +  +   E+    +
Sbjct: 649 HVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMVLLELIGGRKNYD-PSETSEKCHFPS 707

Query: 222 WVYKCFINRELNKLVRG----TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
           + +K     +L  +V G     +V  + ++  +K  LWC+Q++   RPSM  VV ML
Sbjct: 708 FAFKKMEEGKLMDIVDGKMKNVDVTDERVQRAMKTALWCIQEDMQTRPSMSKVVQML 764

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VYT3|Y4052_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana GN=At4g30520 PE=2 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 99/176 (56%), Gaps = 15/176 (8%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
           WN R RIA+  A+G+LYLH++C+P I+H D+K  NIL+DE + A + DFGLAKLL+    
Sbjct: 397 WNMRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDECFEAVVGDFGLAKLLNHADS 456

Query: 172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                     G +APE       S K DV+G+GI+LLE I     +E   +  ++  +  
Sbjct: 457 HVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKTVSQKGAMLE 516

Query: 222 WVYKCFINRELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
           WV K     ++ +L+    GT  DK  +  +++V L C Q  PA RP M  VV+ML
Sbjct: 517 WVRKLHEEMKVEELLDRELGTNYDKIEVGEMLQVALLCTQYLPAHRPKMSEVVLML 572

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q93ZS4|NIK3_ARATH Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 15/176 (8%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
           W++R +IA+  A+G++YLH++C+P I+H D+K  NIL+DE + A + DFGLAKLL  +  
Sbjct: 399 WSRRKKIAVGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDS 458

Query: 172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                     G +APE       S K DV+G+GI+LLE I   + ++   S  ++ ++ +
Sbjct: 459 HVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRSAHQKGVMLD 518

Query: 222 WVYKCFINRELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
           WV K     +L +L+      + D+  LE +V+V L C Q  P+ RP M  V+ ML
Sbjct: 519 WVKKLHQEGKLKQLIDKDLNDKFDRVELEEIVQVALLCTQFNPSHRPKMSEVMKML 574

Involved in defense response to geminivirus infection.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 15/176 (8%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
           W  R RIAL   +G+LYLH++C+P I+H D+K  NIL+D+++ A + DFGLAKLL  +  
Sbjct: 406 WGTRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYFEAVVGDFGLAKLLDHEES 465

Query: 172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                     G +APE       S K DV+G+GI+LLE I     +E   +  +   + +
Sbjct: 466 HVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQRGAILD 525

Query: 222 WVYKCFINRELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
           WV K    ++L ++V     +  D+  +E +V+V L C Q  P  RP M  VV ML
Sbjct: 526 WVKKLQQEKKLEQIVDKDLKSNYDRIEVEEMVQVALLCTQYLPIHRPKMSEVVRML 581

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 17/178 (9%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
           W+ R RIA+  A+G++YLH++C+P I+H D+K  NIL+D++  A + DFGLAKLL  +  
Sbjct: 406 WSIRKRIAIGAARGLVYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDS 465

Query: 172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                     G +APE       S K DV+G+GI+LLE +      E   +  ++ ++ +
Sbjct: 466 HVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELVTGQRAFEFGKAANQKGVMLD 525

Query: 222 WVYKCFINRELNKLVRGTEVDKKN-----LENLVKVGLWCVQDEPALRPSMKCVVMML 274
           WV K    ++L  LV    + KK+     L+ +V+V L C Q  P  RP M  VV ML
Sbjct: 526 WVKKIHQEKKLELLVDKELLKKKSYDEIELDEMVRVALLCTQYLPGHRPKMSEVVRML 583

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
225431565	791	PREDICTED: G-type lectin S-receptor-like	0.635	0.219	0.647	1e-65
359477052	767	PREDICTED: G-type lectin S-receptor-like	0.635	0.226	0.641	1e-65
147867430	930	hypothetical protein VITISV_038238 [Viti	0.635	0.187	0.647	1e-65
359477046	798	PREDICTED: G-type lectin S-receptor-like	0.635	0.218	0.647	4e-65
224116044	313	predicted protein [Populus trichocarpa]	0.635	0.555	0.598	9e-61
224105693	313	predicted protein [Populus trichocarpa]	0.635	0.555	0.593	2e-60
357478041	854	Receptor like kinase [Medicago truncatul	0.635	0.203	0.588	2e-59
224093336	755	predicted protein [Populus trichocarpa]	0.635	0.230	0.601	1e-58
356546166	810	PREDICTED: G-type lectin S-receptor-like	0.627	0.212	0.607	2e-58
357478045	928	Kinase-like protein [Medicago truncatula	0.605	0.178	0.573	6e-56

>gi|225431565|ref|XP_002276127.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/187 (64%), Positives = 148/187 (79%), Gaps = 13/187 (6%)

Query: 100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI 159
           LA I+F S  R P W++RVRIALDVA+GILYLH+ECE PI+HCDIKPQNILMD+FWTAKI
Sbjct: 589 LADILFKSKTRPP-WDERVRIALDVARGILYLHEECEAPIIHCDIKPQNILMDDFWTAKI 647

Query: 160 SDFGLAKLL------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
           SDFGLAKLL              +G +APE  +  PISVKADVY YGIVLLE +CC  N+
Sbjct: 648 SDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWQQNIPISVKADVYSYGIVLLELVCCRRNL 707

Query: 208 EIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSM 267
           E++ SKPEEI+L+NW YKCF+  EL KL+ G EV++K+LE +VK+GLWC+QDEPALRPS+
Sbjct: 708 EVNVSKPEEIVLSNWAYKCFVAGELYKLLGGEEVERKSLEEMVKLGLWCIQDEPALRPSI 767

Query: 268 KCVVMML 274
           K +V+ML
Sbjct: 768 KSIVLML 774

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477052|ref|XP_002276297.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 120/187 (64%), Positives = 149/187 (79%), Gaps = 13/187 (6%)

Query: 100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI 159
           LA I+F S  R P W++RVRIALDVA+GILYLH+ECE PI+HCDIKPQNILMD+FWTAKI
Sbjct: 565 LADILFKSKTRPP-WDERVRIALDVARGILYLHEECEAPIIHCDIKPQNILMDDFWTAKI 623

Query: 160 SDFGLAKLL------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
           SDFGLAKLL              +G +APE  +  PISVKADVY YGIVLLE +CC  N+
Sbjct: 624 SDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWQQNIPISVKADVYSYGIVLLELVCCRRNL 683

Query: 208 EIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSM 267
           E++ S+PEEI+L+NW YKCF+  EL+KL+ G EV++K+LE +VK+GLWC+QDEPALRPS+
Sbjct: 684 EVNVSEPEEIVLSNWAYKCFVAGELHKLLGGEEVERKSLEQMVKLGLWCIQDEPALRPSI 743

Query: 268 KCVVMML 274
           K +V+ML
Sbjct: 744 KSIVLML 750

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147867430|emb|CAN78998.1| hypothetical protein VITISV_038238 [Vitis vinifera]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/187 (64%), Positives = 148/187 (79%), Gaps = 13/187 (6%)

Query: 100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI 159
           LA I+F S  R P W++RVRIALDVA+GILYLH+ECE PI+HCDIKPQNILMD+FWTAKI
Sbjct: 728 LADILFKSKTRPP-WDERVRIALDVARGILYLHEECEAPIIHCDIKPQNILMDDFWTAKI 786

Query: 160 SDFGLAKLL------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
           SDFGLAKLL              +G +APE  +  PISVKADVY YGIVLLE +CC  N+
Sbjct: 787 SDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWQQNIPISVKADVYSYGIVLLELVCCRRNL 846

Query: 208 EIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSM 267
           E++ SKPEEI+L+NW YKCF+  EL KL+ G EV++K+LE +VK+GLWC+QDEPALRPS+
Sbjct: 847 EVNVSKPEEIVLSNWAYKCFVAGELYKLLGGEEVERKSLEEMVKLGLWCIQDEPALRPSI 906

Query: 268 KCVVMML 274
           K +V+ML
Sbjct: 907 KSIVLML 913

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477046|ref|XP_002275786.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 121/187 (64%), Positives = 145/187 (77%), Gaps = 13/187 (6%)

Query: 100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI 159
           LA ++F +  R P+WN+RVRIALDVA+GILYLH+ECE PI+HCDIKPQNILMDEF  AKI
Sbjct: 596 LANLLFNAGTR-PHWNERVRIALDVARGILYLHEECETPIIHCDIKPQNILMDEFLNAKI 654

Query: 160 SDFGLAKLL------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
           SDFGLAKLL              +G +APE  + TPISVKAD+Y YGIVLLE +CC +NM
Sbjct: 655 SDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWQRNTPISVKADIYSYGIVLLEIVCCRKNM 714

Query: 208 EIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSM 267
           E+    PEEIIL+NWVY+C ++REL+KLV     DKK LE +VKVGLWC+QDEPALRPSM
Sbjct: 715 EVQVKNPEEIILSNWVYQCMVSRELDKLVADEVADKKTLERMVKVGLWCIQDEPALRPSM 774

Query: 268 KCVVMML 274
           K VV++L
Sbjct: 775 KSVVLIL 781

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116044|ref|XP_002332034.1| predicted protein [Populus trichocarpa] gi|222875259|gb|EEF12390.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (610), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 141/187 (75%), Gaps = 13/187 (6%)

Query: 100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI 159
           LA ++F   ER P W+ RV+IALD+AKGILYLH+ECE PI+HCDIKPQNILMD+FW AKI
Sbjct: 111 LADLLF-RTERIPNWSHRVKIALDIAKGILYLHEECEAPIIHCDIKPQNILMDDFWNAKI 169

Query: 160 SDFGLAKLL------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
           SDFGLAKLL              +G +APE +K TPISVKADVY YG++LLE + C  N+
Sbjct: 170 SDFGLAKLLVPDQTRTFTIVRGTRGYLAPEWHKNTPISVKADVYSYGVMLLEIVFCRRNI 229

Query: 208 EIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSM 267
           E + S+PEE+ L+NW Y+  + REL+KL  G +VD +NLE +V VG+WC+QDEP +RPSM
Sbjct: 230 ETNVSRPEEVQLSNWAYELLVERELDKLDLGEDVDLQNLEKMVMVGIWCIQDEPGIRPSM 289

Query: 268 KCVVMML 274
           K VV+ML
Sbjct: 290 KSVVLML 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105693|ref|XP_002333784.1| predicted protein [Populus trichocarpa] gi|222838485|gb|EEE76850.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 140/187 (74%), Gaps = 13/187 (6%)

Query: 100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI 159
           LA ++F   ER P W+ RV+IALD+AKGILYLH+ECE PI+HCDIKPQNILMD+FW AKI
Sbjct: 111 LADLLF-RTERIPNWSHRVKIALDIAKGILYLHEECEAPIIHCDIKPQNILMDDFWNAKI 169

Query: 160 SDFGLAKLL------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
           SDFGLAKLL              +G +APE +K TPISVKADVY YG++LLE + C  N+
Sbjct: 170 SDFGLAKLLVPDQTRTFTMVRGTRGYLAPEWHKNTPISVKADVYSYGVMLLEIVFCRRNI 229

Query: 208 EIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSM 267
           E + S+PEE+ L+NW Y+  + REL+KL  G +VD +N E +V VG+WC+QDEP +RPSM
Sbjct: 230 ETNVSRPEEVQLSNWAYELLVERELDKLDLGEDVDLQNFEKMVMVGIWCIQDEPGIRPSM 289

Query: 268 KCVVMML 274
           K VV+ML
Sbjct: 290 KSVVLML 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478041|ref|XP_003609306.1| Receptor like kinase [Medicago truncatula] gi|357478087|ref|XP_003609329.1| Receptor like kinase [Medicago truncatula] gi|355510361|gb|AES91503.1| Receptor like kinase [Medicago truncatula] gi|355510384|gb|AES91526.1| Receptor like kinase [Medicago truncatula]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 138/187 (73%), Gaps = 13/187 (6%)

Query: 100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI 159
           L  ++F   +R P WN+RVRIALD+A+GILYLH+EC+ PI+HCD+KPQNILMD+FWTAKI
Sbjct: 608 LGKLLF-GDQRRPDWNERVRIALDIARGILYLHEECDAPIIHCDLKPQNILMDKFWTAKI 666

Query: 160 SDFGLAKLL------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
           SDFGLAKLL              +G MAPE  K   ISVK DVY YGIVLLE +CC  N+
Sbjct: 667 SDFGLAKLLMPDQTRTFTMVRGTRGYMAPEWNKNVAISVKTDVYSYGIVLLEILCCRRNL 726

Query: 208 EIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSM 267
           +++  +PEEI+L  W YKCFI  ++NKLV    +DK  +EN+VKV LWC+QD+P LRP+M
Sbjct: 727 DVNVLEPEEILLAGWTYKCFIAGDVNKLVPSEAIDKNVMENMVKVALWCIQDDPFLRPTM 786

Query: 268 KCVVMML 274
           K VV+ML
Sbjct: 787 KGVVLML 793

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093336|ref|XP_002309887.1| predicted protein [Populus trichocarpa] gi|222852790|gb|EEE90337.1| predicted protein [Populus trichocarpa]

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/188 (60%), Positives = 140/188 (74%), Gaps = 14/188 (7%)

Query: 100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI 159
           LA ++F + ER P W+ RV+IALD+AKGILYLH+ECE PI+HCDIKPQNILMD+FWTAKI
Sbjct: 552 LANLLFRN-ERIPDWSDRVKIALDIAKGILYLHEECEAPIMHCDIKPQNILMDDFWTAKI 610

Query: 160 SDFGLAKLL------------SDKGCMAPECYK-RTPISVKADVYGYGIVLLETICCWEN 206
           SDFGLAKLL               G MAPE  K  TP SVK DVY YG+VLLE + C  N
Sbjct: 611 SDFGLAKLLVPDQTRTLTIARGTPGYMAPEWTKISTPTSVKVDVYSYGVVLLEIVFCRRN 670

Query: 207 MEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPS 266
           M+I+ SKPEE++L+ W Y+  + REL++L  G +VD++ LE +V +G+WC+QDEP LRPS
Sbjct: 671 MKINVSKPEEVLLSKWAYELLVARELDRLDLGEDVDRQKLEKMVMIGIWCIQDEPGLRPS 730

Query: 267 MKCVVMML 274
           MK VVMML
Sbjct: 731 MKTVVMML 738

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546166|ref|XP_003541502.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Glycine max]

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/186 (60%), Positives = 138/186 (74%), Gaps = 14/186 (7%)

Query: 103 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           I    ++R P W++RVRIAL++AKGILYLH+ECE PI+HCDIKPQNILMDEFWTAKISDF
Sbjct: 608 IFGAQSQRRPGWDERVRIALEIAKGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDF 667

Query: 163 GLAKLL------------SDKGCMAPECYK-RTPISVKADVYGYGIVLLETICCWENMEI 209
           GLAKLL              +G +APE  K   PISVK DVY YGIVLLE +CC  N+E+
Sbjct: 668 GLAKLLMPDQTRTITGARGTRGYVAPEWDKLNIPISVKVDVYSYGIVLLEILCCRRNIEV 727

Query: 210 DASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK-NLENLVKVGLWCVQDEPALRPSMK 268
             S+PE  +L+NW YKCF++ +LNKL     VD K ++EN+VKV LWC+QDEP LRP+MK
Sbjct: 728 HVSEPEAALLSNWAYKCFVSGQLNKLFLWESVDNKTSVENIVKVALWCIQDEPFLRPTMK 787

Query: 269 CVVMML 274
            VV+ML
Sbjct: 788 SVVLML 793

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478045|ref|XP_003609308.1| Kinase-like protein [Medicago truncatula] gi|357478091|ref|XP_003609331.1| Kinase-like protein [Medicago truncatula] gi|355510363|gb|AES91505.1| Kinase-like protein [Medicago truncatula] gi|355510386|gb|AES91528.1| Kinase-like protein [Medicago truncatula]

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 102/178 (57%), Positives = 131/178 (73%), Gaps = 12/178 (6%)

Query: 109 ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
           +R P W++RVR+ALD+A+GI YLH+ECE PI+HCDIKPQNILMDEFWTAKISDFGLAKLL
Sbjct: 616 QRRPDWDERVRMALDIARGISYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLL 675

Query: 169 ------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEE 216
                         +G MAPE     PIS+KADVY YGI+L E +CC  N++++  +PEE
Sbjct: 676 MPDQTRTFTVVRGTRGYMAPEWNMNVPISLKADVYSYGIMLFEILCCRRNLDVNVLEPEE 735

Query: 217 IILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
           I+L+ W YKC +  ++N LV    +D   +EN+VKV LWC+QD+P LRP+MK VV+ML
Sbjct: 736 ILLSGWAYKCLVAGQVNNLVPWEVIDNNVMENMVKVALWCIQDDPFLRPTMKGVVLML 793

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2116525	821	SD2-5 "S-domain-2 5" [Arabidop	0.583	0.194	0.395	9.8e-27
TAIR|locus:2182603	872	AT5G35370 [Arabidopsis thalian	0.321	0.100	0.47	3e-26
TAIR|locus:2118811	648	SARK "SENESCENCE-ASSOCIATED RE	0.587	0.248	0.397	3.9e-25
TAIR|locus:2061466	634	AT2G23950 [Arabidopsis thalian	0.587	0.253	0.386	4.7e-25
TAIR|locus:2059103	828	AT2G19130 [Arabidopsis thalian	0.580	0.192	0.391	5.2e-25
TAIR|locus:2013021	625	SERK1 "somatic embryogenesis r	0.748	0.328	0.353	7.4e-25
TAIR|locus:2036636	632	NIK3 "NSP-interacting kinase 3	0.587	0.254	0.369	2.1e-24
TAIR|locus:2033577	425	AT1G70740 [Arabidopsis thalian	0.624	0.402	0.345	2.8e-24
TAIR|locus:2119350	389	AT4G13190 [Arabidopsis thalian	0.580	0.408	0.396	5.3e-24
TAIR|locus:2040461	620	SERK4 "somatic embryogenesis r	0.744	0.329	0.343	5.8e-24

TAIR|locus:2116525 SD2-5 "S-domain-2 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 9.8e-27, P = 9.8e-27
 Identities = 70/177 (39%), Positives = 104/177 (58%)

Query:   114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---- 169
             W+ R  IAL  AKG+ YLH++C+  I+HCDIKP+NIL+D+ + AK+SDFGLAKL++    
Sbjct:   589 WDTRFNIALGTAKGLAYLHEDCDARIVHCDIKPENILLDDNFNAKVSDFGLAKLMTREQS 648

Query:   170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                      +G +APE      IS K+DVY YG+VLLE I   +N +  +   E+    +
Sbjct:   649 HVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMVLLELIGGRKNYD-PSETSEKCHFPS 707

Query:   222 WVYKCFINRELNKLVRG----TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
             + +K     +L  +V G     +V  + ++  +K  LWC+Q++   RPSM  VV ML
Sbjct:   708 FAFKKMEEGKLMDIVDGKMKNVDVTDERVQRAMKTALWCIQEDMQTRPSMSKVVQML 764

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA;IDA

TAIR|locus:2182603 AT5G35370 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 3.0e-26, Sum P(3) = 3.0e-26
 Identities = 47/100 (47%), Positives = 63/100 (63%)

Query:   114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD--- 170
             W +R  IAL  A+G+ YLH  C+  I+HCD+KP+NIL+ + +  KISDFGL+KLL+    
Sbjct:   610 WQERFDIALGTARGLAYLHSGCDQKIIHCDVKPENILLHDHFQPKISDFGLSKLLNQEES 669

Query:   171 ---------KGCMAPECYKRTPISVKADVYGYGIVLLETI 201
                      +G +APE      IS KADVY YG+VLLE +
Sbjct:   670 SLFTTMRGTRGYLAPEWITNAAISEKADVYSYGMVLLELV 709

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

TAIR|locus:2118811 SARK "SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 3.9e-25, P = 3.9e-25
 Identities = 70/176 (39%), Positives = 100/176 (56%)

Query:   114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--DK 171
             WN R RIA+  A+G+LYLH++C+P I+H D+K  NIL+DE + A + DFGLAKLL+  D 
Sbjct:   397 WNMRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDECFEAVVGDFGLAKLLNHADS 456

Query:   172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                       G +APE       S K DV+G+GI+LLE I     +E   +  ++  +  
Sbjct:   457 HVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKTVSQKGAMLE 516

Query:   222 WVYKCFINRELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
             WV K     ++ +L+    GT  DK  +  +++V L C Q  PA RP M  VV+ML
Sbjct:   517 WVRKLHEEMKVEELLDRELGTNYDKIEVGEMLQVALLCTQYLPAHRPKMSEVVLML 572

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010150 "leaf senescence" evidence=IMP

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2061466 AT2G23950 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 4.7e-25, P = 4.7e-25
 Identities = 68/176 (38%), Positives = 99/176 (56%)

Query:   114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
             WN R +IA+  A+G+ YLH++C+P I+H D+K  NIL+DE++ A + DFGLAKLL+ +  
Sbjct:   393 WNTRKKIAIGAARGLFYLHEQCDPKIIHRDVKAANILLDEYFEAVVGDFGLAKLLNHEDS 452

Query:   172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                       G +APE       S K DV+G+GI+LLE I     +E   S  ++  +  
Sbjct:   453 HVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSVSQKGAMLE 512

Query:   222 WVYKCFINRELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
             WV K     ++ +LV    GT  D+  +  +++V L C Q  PA RP M  VV ML
Sbjct:   513 WVRKLHKEMKVEELVDRELGTTYDRIEVGEMLQVALLCTQFLPAHRPKMSEVVQML 568

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2059103 AT2G19130 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 5.2e-25, P = 5.2e-25
 Identities = 70/179 (39%), Positives = 99/179 (55%)

Query:   114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-D-- 170
             W  R +IAL  A+G+ YLHDEC   I+HCDIKP+NIL+D  +  K++DFGLAKL+  D  
Sbjct:   590 WKLRFQIALGTARGLAYLHDECRDCIIHCDIKPENILLDSQFCPKVADFGLAKLVGRDFS 649

Query:   171 ---------KGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI-ILT 220
                      +G +APE      I+ KADVY YG++L E +    N E   S+ E++    
Sbjct:   650 RVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFELVSGRRNTE--QSENEKVRFFP 707

Query:   221 NWVYKCFI-NRELNKLV----RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
             +W       + ++  LV     G  VD + +    KV  WC+QDE + RP+M  VV +L
Sbjct:   708 SWAATILTKDGDIRSLVDPRLEGDAVDIEEVTRACKVACWCIQDEESHRPAMSQVVQIL 766

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0048544 "recognition of pollen" evidence=IEA

TAIR|locus:2013021 SERK1 "somatic embryogenesis receptor-like kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 7.4e-25, P = 7.4e-25
 Identities = 83/235 (35%), Positives = 120/235 (51%)

Query:    70 VSWTTDIEVSSVA-------MRG-SKPSTEAALDLPWDL-AYIIFCSAERNPY-----WN 115
             + + T++E+ S+A       +RG     TE  L  P+     +  C  ER P      W 
Sbjct:   342 LQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWP 401

Query:   116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK---- 171
              R RIAL  A+G+ YLHD C+P I+H D+K  NIL+DE + A + DFGLAKL+  K    
Sbjct:   402 TRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHV 461

Query:   172 --------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDA-SKPEEIILTNW 222
                     G +APE       S K DV+GYGI+LLE I      ++   +  ++++L +W
Sbjct:   462 TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDW 521

Query:   223 VYKCFINRELNKLVRG---TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
             V      ++L  LV     T  +++ LE +++V L C Q  P  RP M  VV ML
Sbjct:   522 VKGLLKEKKLEMLVDPDLQTNYEERELEQVIQVALLCTQGSPMERPKMSEVVRML 576

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=TAS

GO:0009556 "microsporogenesis" evidence=IGI;IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI;IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0007030 "Golgi organization" evidence=IGI

GO:0010227 "floral organ abscission" evidence=IGI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2036636 NIK3 "NSP-interacting kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.1e-24, P = 2.1e-24
 Identities = 65/176 (36%), Positives = 102/176 (57%)

Query:   114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
             W++R +IA+  A+G++YLH++C+P I+H D+K  NIL+DE + A + DFGLAKLL  +  
Sbjct:   399 WSRRKKIAVGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDS 458

Query:   172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                       G +APE       S K DV+G+GI+LLE I   + ++   S  ++ ++ +
Sbjct:   459 HVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRSAHQKGVMLD 518

Query:   222 WVYKCFINRELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
             WV K     +L +L+      + D+  LE +V+V L C Q  P+ RP M  V+ ML
Sbjct:   519 WVKKLHQEGKLKQLIDKDLNDKFDRVELEEIVQVALLCTQFNPSHRPKMSEVMKML 574

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2033577 AT1G70740 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.8e-24, P = 2.8e-24
 Identities = 65/188 (34%), Positives = 103/188 (54%)

Query:   103 IIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD 161
             ++F S  ++   W QR  I   +A+G+LYLH++    I+H DIK  NIL+DE W  KI+D
Sbjct:   146 VLFKSNRKSEIDWKQRFEIITGIARGLLYLHEDAPNCIIHRDIKAGNILLDEKWVPKIAD 205

Query:   162 FGLAKLLSD------------KGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEI 209
             FG+A+L  +             G MAPE      +SVKADV+ +G+++LE +   +N   
Sbjct:   206 FGMARLYQEDVTHVNTRVAGTNGYMAPEYVMHGVLSVKADVFSFGVLVLELVSGQKNSSF 265

Query:   210 DASKPEEIILTNWVYKCFIN-RELNKLVR--GTEVDKKNLENLVKVGLWCVQDEPALRPS 266
                 P++ +L  W +K +   R +  L +      D   ++  V++GL CVQ +P  RPS
Sbjct:   266 SMRHPDQTLL-EWAFKLYKKGRTMEILDQDIAASADPDQVKLCVQIGLLCVQGDPHQRPS 324

Query:   267 MKCVVMML 274
             M+ V ++L
Sbjct:   325 MRRVSLLL 332

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2119350 AT4G13190 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 71/179 (39%), Positives = 100/179 (55%)

Query:   114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL------ 167
             WN R+RIAL  AKG+ YLH++  PP+++ D K  NIL++  + AK+SDFGLAKL      
Sbjct:   169 WNSRIRIALGAAKGLEYLHEKANPPVIYRDFKSSNILLNVDFDAKLSDFGLAKLGSVGDT 228

Query:   168 --LSDK-----GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKP-EEIIL 219
               +S +     G  APE +K   ++VK+DVY +G+VLLE I       ID ++P  E  L
Sbjct:   229 QNVSSRVVGTYGYCAPEYHKTGQLTVKSDVYSFGVVLLELIT--GKRVIDTTRPCHEQNL 286

Query:   220 TNWVYKCFI--NR--ELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               W    F   NR  EL   +   E  +K+L   V +   C+Q+EP +RP +  VV  L
Sbjct:   287 VTWAQPIFREPNRFPELADPLLQGEFPEKSLNQAVAIAAMCLQEEPIVRPLISDVVTAL 345

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2040461 SERK4 "somatic embryogenesis receptor-like kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
 Identities = 81/236 (34%), Positives = 122/236 (51%)

Query:    70 VSWTTDIEVSSVA-------MRG-SKPSTEAALDLPWDL-AYIIFCSAER---NPY--WN 115
             + + T++E+ S+A       +RG     TE  L  P+     +  C  ER   NP   W 
Sbjct:   334 LQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPEGNPALDWP 393

Query:   116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--DK-- 171
             +R  IAL  A+G+ YLHD C+  I+H D+K  NIL+DE + A + DFGLAKL++  D   
Sbjct:   394 KRKHIALGSARGLAYLHDHCDQKIIHRDVKAANILLDEEFEAVVGDFGLAKLMNYNDSHV 453

Query:   172 --------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDA-SKPEEIILTNW 222
                     G +APE       S K DV+GYG++LLE I   +  ++   +  ++I+L +W
Sbjct:   454 TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDW 513

Query:   223 VYKCFINRELNKLVRGTEVDKK----NLENLVKVGLWCVQDEPALRPSMKCVVMML 274
             V +    ++L  LV   E++ K     +E L+++ L C Q     RP M  VV ML
Sbjct:   514 VKEVLKEKKLESLV-DAELEGKYVETEVEQLIQMALLCTQSSAMERPKMSEVVRML 568

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0008219 "cell death" evidence=IGI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0010150 "leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	LOW CONFIDENCE prediction!
3rd Layer	2.7.11	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034882001 SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (774 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-23
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-20
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-20
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-17
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-17
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	4e-17
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	8e-16
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	6e-15
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	7e-15
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	9e-15
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	1e-12
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-12
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	3e-12
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	6e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-12
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	9e-12
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	1e-11
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	3e-11
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	4e-11
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	5e-11
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-10
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-10
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	5e-10
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	5e-10
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	7e-10
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	7e-10
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-09
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	1e-09
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-09
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	2e-09
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	3e-09
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	3e-09
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	7e-09
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	9e-09
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	1e-08
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	1e-08
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	2e-08
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	2e-08
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	2e-08
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	2e-08
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	2e-08
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	2e-08
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	2e-08
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	3e-08
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	3e-08
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	3e-08
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	3e-08
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	4e-08
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	5e-08
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	6e-08
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	8e-08
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	8e-08
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	1e-07
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	1e-07
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	1e-07
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	1e-07
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	1e-07
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-07
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	3e-07
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	3e-07
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	3e-07
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	3e-07
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-07
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	5e-07
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	6e-07
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	8e-07
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	8e-07
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	9e-07
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	9e-07
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	1e-06
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	1e-06
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-06
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	1e-06
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	1e-06
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	2e-06
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	2e-06
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	2e-06
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	2e-06
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	3e-06
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	3e-06
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	3e-06
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	3e-06
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	3e-06
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	3e-06
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	3e-06
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	4e-06
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	4e-06
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	4e-06
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	4e-06
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	4e-06
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	4e-06
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	5e-06
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	5e-06
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	6e-06
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	7e-06
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	7e-06
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	7e-06
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	8e-06
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	9e-06
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-05
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	1e-05
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	1e-05
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	1e-05
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	1e-05
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-05
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	1e-05
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	1e-05
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	1e-05
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	1e-05
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	1e-05
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	1e-05
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	2e-05
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	2e-05
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	2e-05
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	2e-05
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	2e-05
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	2e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	2e-05
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	2e-05
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	3e-05
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	3e-05
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	3e-05
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	3e-05
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	3e-05
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	4e-05
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	4e-05
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	4e-05
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	5e-05
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	5e-05
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	5e-05
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	6e-05
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	6e-05
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	6e-05
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	6e-05
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	7e-05
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	7e-05
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	7e-05
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	7e-05
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	7e-05
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	8e-05
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	8e-05
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	8e-05
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	9e-05
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	9e-05
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	9e-05
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	1e-04
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	1e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	1e-04
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	1e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	1e-04
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	1e-04
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	1e-04
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	1e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	1e-04
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	1e-04
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	1e-04
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	2e-04
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	2e-04
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	2e-04
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	2e-04
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	2e-04
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	2e-04
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-04
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	2e-04
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	2e-04
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	2e-04
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	2e-04
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	2e-04
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	2e-04
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	2e-04
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	2e-04
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	3e-04
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	3e-04
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	3e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	3e-04
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	3e-04
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	3e-04
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	3e-04
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	3e-04
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	4e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	4e-04
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	4e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	4e-04
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	4e-04
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	5e-04
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	6e-04
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	6e-04
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	6e-04
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	6e-04
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	7e-04
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	8e-04
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	8e-04
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	8e-04
cd05105	400	cd05105, PTKc_PDGFR_alpha, Catalytic domain of the	9e-04
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	0.001
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	0.001
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	0.001
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	0.001
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	0.001
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	0.001
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	0.001
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	0.002
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	0.002
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	0.002
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.002
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	0.002
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	0.002
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	0.002
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	0.003
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	0.003
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	0.003
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	0.003
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	0.004
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	0.004
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	0.004
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.004
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	0.004
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	0.004
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 95.0 bits (237), Expect = 1e-23
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 16/99 (16%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKISDFGLAKLLSDK- 171
            ++ +RI L + +G+ YLH      I+H D+KP+NIL+D      K++DFGL+KLL+   
Sbjct: 91  EDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDK 147

Query: 172 ----------GCMAPECYK-RTPISVKADVYGYGIVLLE 199
                       MAPE    +   S K+D++  G++L E
Sbjct: 148 SLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYE 186

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 87.6 bits (218), Expect = 2e-20
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
                +   + YLH +    I+H D+KP+NIL+DE    K++DFGLA+ L          
Sbjct: 101 FYLRQILSALEYLHSKG---IVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFV 157

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLE 199
                MAPE           D++  G++L E
Sbjct: 158 GTPEYMAPEVLLGKGYGKAVDIWSLGVILYE 188

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 87.3 bits (217), Expect = 2e-20
 Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 41/179 (22%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG- 172
            ++  +IAL + +G+ YLH      I+H D+KP+NIL+DE    KI+DFGLAK L     
Sbjct: 97  EDEAKKIALQILRGLEYLHSN---GIIHRDLKPENILLDENGVVKIADFGLAKKLLKSSS 153

Query: 173 -----C-----MAPE-CYKRTPISVKADVYGYGIVLLETIC---------CWENMEIDAS 212
                      MAPE          K DV+  G++L E +            + +++   
Sbjct: 154 SLTTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRR 213

Query: 213 KPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVV 271
                +  +       + E   L++                  C+  +P+ RP+ + ++
Sbjct: 214 ILGPPLEFDEPKWSSGSEEAKDLIK-----------------KCLNKDPSKRPTAEEIL 255

Length = 260

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 78.7 bits (195), Expect = 2e-17
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 28/165 (16%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
             +  AL +A+G+ YL  +     +H D+  +N L+ E    KISDFGL++ L D     
Sbjct: 103 DLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYR 159

Query: 171 -KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV 223
            +G       MAPE  K    + K+DV+ +G+        WE       +P   +    V
Sbjct: 160 KRGGKLPIRWMAPESLKEGKFTSKSDVWSFGV------LLWEIFT-LGEQPYPGMSNEEV 212

Query: 224 YKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
            +   N                   L  + L C  ++P  RP+  
Sbjct: 213 LEYLKNGYRLPQPPNCP------PELYDLMLQCWAEDPEDRPTFS 251

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------- 173
              + +G+ YLH      I+H DIK  NIL+D     K++DFG AK L D          
Sbjct: 107 TRQILEGLAYLHSNG---IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSV 163

Query: 174 ------MAPECYKRTPISVKADVYGYGIVLLE 199
                 MAPE  +       AD++  G  ++E
Sbjct: 164 RGTPYWMAPEVIRGEEYGRAADIWSLGCTVIE 195

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 78.4 bits (194), Expect = 4e-17
 Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 34/170 (20%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD--- 170
            +  +  AL +A+G+ YL  +     +H D+  +N L+ E    KISDFGL++ L D   
Sbjct: 102 LSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDY 158

Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
              KG       MAPE  K    + K+DV+ +G++L      WE       +P       
Sbjct: 159 YKVKGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLL------WEIFT-LGEEP------- 204

Query: 222 WVYKCFINRE-LNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALRPSMK 268
             Y    N E L  L +G  + K       L K+ L C  ++P  RP+  
Sbjct: 205 --YPGMSNAEVLEYLKKGYRLPKPPNCPPELYKLMLQCWAEDPEDRPTFS 252

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 74.5 bits (184), Expect = 8e-16
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 22/103 (21%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
             +++AL +AKG+ YL  +     +H D+  +N L+ E    KISDFGL++ + +     
Sbjct: 103 DLLQMALQIAKGMEYLESK---NFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYR 159

Query: 174 -----------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                      MAPE  K    + K+DV+ +G++L      WE
Sbjct: 160 KRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLL------WE 196

Length = 258

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 72.1 bits (178), Expect = 6e-15
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 14/84 (16%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-----------MA 175
            + YLH      ILH DIKPQNI +      K+ DFG++K+LS               ++
Sbjct: 115 ALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLS 171

Query: 176 PECYKRTPISVKADVYGYGIVLLE 199
           PE  +  P + K+D++  G VL E
Sbjct: 172 PELCQNKPYNYKSDIWSLGCVLYE 195

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 72.2 bits (178), Expect = 7e-15
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 22/105 (20%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
               +  A+ +AKG+ YL        +H D+  +N L+ E    KISDFGL++ + D   
Sbjct: 104 LKDLLSFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDY 160

Query: 174 -------------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                        MAPE  K    + K+DV+ +G++L      WE
Sbjct: 161 YRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLL------WE 199

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 71.9 bits (177), Expect = 9e-15
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           +  ++ KG+ YLH      I+H DIK  NIL+      K+ DFGL+  LSD         
Sbjct: 103 VCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVG 159

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLE 199
               MAPE     P   KAD++  GI  +E
Sbjct: 160 TPYWMAPEVINGKPYDYKADIWSLGITAIE 189

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 17/98 (17%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-DKGCM 174
           + +  +  + KG+ YL  +     +H D+  +NIL++     KISDFGLAK+L  DK   
Sbjct: 110 RLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYY 166

Query: 175 -------------APECYKRTPISVKADVYGYGIVLLE 199
                        APEC + +  S  +DV+ +G+ L E
Sbjct: 167 YVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYE 204

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 38/185 (20%)

Query: 99  DLAYIIFCSAE-RNPYWNQRV-RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 156
           DL+  I    + R     Q + RI + + +G+  LH++    ILH D+K  NIL+     
Sbjct: 85  DLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDL 141

Query: 157 AKISDFGLAKLLSDKGC---------MAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
            KI D G++K+L              MAPE +K  P S K+D++  G +L E        
Sbjct: 142 VKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPF 201

Query: 208 EIDASKPEEIILTNWVYKCFINRELNKLVRGT-----EVDKKNLENLVKVGLWCVQDEPA 262
           E  A   +++                K+ RG       +  ++L+N ++     +Q +P 
Sbjct: 202 E--ARSMQDL--------------RYKVQRGKYPPIPPIYSQDLQNFIR---SMLQVKPK 242

Query: 263 LRPSM 267
           LRP+ 
Sbjct: 243 LRPNC 247

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 11/90 (12%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK------G 172
           +IA+ V KG+ YLH++ +  I+H D+KP NIL++     K+ DFG++  L +       G
Sbjct: 104 KIAVAVLKGLTYLHEKHK--IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVG 161

Query: 173 C---MAPECYKRTPISVKADVYGYGIVLLE 199
               MAPE  +    SVK+D++  G+ L+E
Sbjct: 162 TSSYMAPERIQGNDYSVKSDIWSLGLSLIE 191

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 14/91 (15%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           I     KG+ YLH       +H DIK  NIL++E   AK++DFG++  L+D         
Sbjct: 104 ILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVI 160

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLE 199
                MAPE  +    + KAD++  GI  +E
Sbjct: 161 GTPFWMAPEVIQEIGYNNKADIWSLGITAIE 191

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.3 bits (159), Expect = 6e-12
 Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 15/177 (8%)

Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL- 168
           RN  W +R +IA+ +AK + +LH  C P ++  ++ P+ I++D      +    L  LL 
Sbjct: 775 RNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLC 833

Query: 169 SDKGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW 222
           +D  C      +APE  +   I+ K+D+YG+G++L+E +      + +      I+   W
Sbjct: 834 TDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIV--EW 891

Query: 223 VYKCFINRELNKLV-----RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
              C+ +  L+  +         V++  +  ++ + L C   +P  RP    V+  L
Sbjct: 892 ARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTL 948

Length = 968

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 14/94 (14%)

Query: 117 RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           +V+    ++   + YLH      I+H DIKP NIL+DE     I+DF +A  ++      
Sbjct: 101 QVKFWICEIVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTT 157

Query: 171 -----KGCMAPECYKRTPISVKADVYGYGIVLLE 199
                 G MAPE   R   SV  D +  G+   E
Sbjct: 158 STSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYE 191

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 12/90 (13%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
           +IA  V KG+ YLH      I+H DIKP NIL+      K+ DFG++  L +        
Sbjct: 109 KIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTG 165

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLE 199
               MAPE  +  P S+ +DV+  G+ LLE
Sbjct: 166 TSFYMAPERIQGKPYSITSDVWSLGLTLLE 195

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 35/175 (20%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL------- 168
           + +++A ++A G+ YL        +H D+  +N ++ E  T KI DFG+ + +       
Sbjct: 120 KFIQMAAEIADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYR 176

Query: 169 -SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW 222
              KG      MAPE  K    + K+DV+ +G+VL      WE M   A +P        
Sbjct: 177 KGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVL------WE-MATLAEQP-------- 221

Query: 223 VYKCFINRELNKLVRGTEVDKK--NLEN-LVKVGLWCVQDEPALRPSMKCVVMML 274
            Y+   N E+ K V          N  + L+++   C Q  P +RP+   +V  L
Sbjct: 222 -YQGLSNEEVLKFVIDGGHLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSL 275

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 61.1 bits (148), Expect = 4e-11
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 13/93 (13%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q ++ +LDVA+G+ YL  +    ++H D+  +NIL+ E   AK+SDFGLA++ S  G   
Sbjct: 101 QLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARVGS-MGVDN 156

Query: 174 -------MAPECYKRTPISVKADVYGYGIVLLE 199
                   APE  K    S K+DV+ YG++L E
Sbjct: 157 SKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWE 189

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 62.1 bits (149), Expect = 5e-11
 Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 26/174 (14%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKISDFGLAKLLSDKGC- 173
           + + I   +   + YLH +    I+H DIKP+NIL+D      K+ DFGLAKLL D G  
Sbjct: 102 EALFILAQILSALEYLHSKG---IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGST 158

Query: 174 ----------------MAPECYKRT---PISVKADVYGYGIVLLETICCWENMEIDASKP 214
                           MAPE          S  +D++  GI L E +      E + +  
Sbjct: 159 SSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSS 218

Query: 215 EEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
                   + +       + L       +   +    +    +  +P  R S  
Sbjct: 219 ATSQTLKIILELPTPSLASPLS--PSNPELISKAASDLLKKLLAKDPKNRLSSS 270

Length = 384

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 11/92 (11%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---DKG 172
           Q++  ALDV +G+ YL    E   +H D+  +N+L+ E   AK+SDFGLAK  S   D G
Sbjct: 103 QQLGFALDVCEGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSG 159

Query: 173 CM-----APECYKRTPISVKADVYGYGIVLLE 199
            +     APE  +    S K+DV+ +GI+L E
Sbjct: 160 KLPVKWTAPEALREKKFSTKSDVWSFGILLWE 191

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 14/87 (16%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---------- 173
           V +G+ YLH++    ++H DIK  NIL  +    K++DFG+A  L+D             
Sbjct: 108 VLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPY 164

Query: 174 -MAPECYKRTPISVKADVYGYGIVLLE 199
            MAPE  + +  S  +D++  G  ++E
Sbjct: 165 WMAPEVIEMSGASTASDIWSLGCTVIE 191

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 58.3 bits (141), Expect = 5e-10
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 16/112 (14%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
           R  + +  G+ +LH +    ILH DIK  N+ +D +   KI D G+AKLLSD        
Sbjct: 105 RFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTI 161

Query: 174 ------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL 219
                 ++PE  +  P + K+DV+  G+VL E  CC      DA+    +IL
Sbjct: 162 VGTPYYLSPELCEDKPYNEKSDVWALGVVLYE--CCTGKHPFDANNQGALIL 211

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 58.4 bits (141), Expect = 5e-10
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 13/113 (11%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
           DL Y I+   ER     + +  +  +  GIL+LH      I++ D+KP+N+L+D+    +
Sbjct: 79  DLKYHIYNVGERGLEMERVIHYSAQITCGILHLH---SMDIVYRDMKPENVLLDDQGNCR 135

Query: 159 ISDFGLAKLLSD----------KGCMAPECYKRTPISVKADVYGYGIVLLETI 201
           +SD GLA  L D           G MAPE  K  P S   D +  G  + E +
Sbjct: 136 LSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMV 188

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 57.9 bits (141), Expect = 7e-10
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 22/106 (20%)

Query: 113 YWNQRVRIALDVAK--------GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL 164
           + ++  R + + A+         + YLH      I++ D+KP+NIL+D     K++DFGL
Sbjct: 83  HLSKEGRFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGL 139

Query: 165 AKLLSDKG------C-----MAPECYKRTPISVKADVYGYGIVLLE 199
           AK LS +G      C     +APE           D +  G++L E
Sbjct: 140 AKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYE 185

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 57.8 bits (140), Expect = 7e-10
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 14/91 (15%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------SDKG 172
           +A  VA+G+ YL ++     +H D+  +NIL+ E    K++DFGLA+L+       SDK 
Sbjct: 109 MACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKK 165

Query: 173 C----MAPECYKRTPISVKADVYGYGIVLLE 199
                 APE       S K+DV+ +GI+L E
Sbjct: 166 IPYKWTAPEAASHGTFSTKSDVWSFGILLYE 196

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 14/94 (14%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
            +  +V +G+ YLH +    ++H DIK  NIL+ +  + K++DFG A  L+ +       
Sbjct: 120 YVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSV 176

Query: 174 ------MAPECYKRTPISVKADVYGYGIVLLETI 201
                 MAPE  KR     K D++  GI+ +E  
Sbjct: 177 VGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMA 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 13/91 (14%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--SDKGC---- 173
           IA  + KG+ YLH +    I+H DIKP N+L++     KI+DFG++K+L  +   C    
Sbjct: 104 IARQILKGLDYLHTKRH--IIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFV 161

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLE 199
                M+PE  +    S  AD++  G+ LLE
Sbjct: 162 GTVTYMSPERIQGESYSYAADIWSLGLTLLE 192

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 24/111 (21%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
              L + +G+ YLH      I+H DIKP NI +D     K+ DFG A  L +        
Sbjct: 103 VYTLQLLEGLAYLH---SHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEE 159

Query: 174 ----------MAPECYKRTPISVK---ADVYGYGIVLLETICC---WENME 208
                     MAPE             AD++  G V+LE       W  ++
Sbjct: 160 VQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELD 210

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 12/75 (16%)

Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-----KGC------MAPECYKRTPISVK 187
           +LH D+KP NI +D     K+ DFGLAK+L       K        M+PE         K
Sbjct: 131 VLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEK 190

Query: 188 ADVYGYGIVLLETIC 202
           +D++  G ++ E +C
Sbjct: 191 SDIWSLGCLIYE-LC 204

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 20/91 (21%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------------SDK 171
           KG+ YLH+     I+H DIK  NIL+D     KISDFG++K L              S +
Sbjct: 117 KGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQ 173

Query: 172 GC---MAPECYKRTPISVKADVYGYGIVLLE 199
           G    MAPE  K+T  + KAD++  G +++E
Sbjct: 174 GSVFWMAPEVVKQTSYTRKADIWSLGCLVVE 204

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 42/155 (27%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----------KGC 173
           V +G+ YLH +    ILH D+K  N+L+D     KISDFG++K   D          +G 
Sbjct: 117 VLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGS 173

Query: 174 ---MAPECY--KRTPISVKADVYGYGIVLLETICC---WENME-------IDASK----- 213
              MAPE         S K D++  G V+LE       W + E       +   +     
Sbjct: 174 VFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPI 233

Query: 214 PEEIILT------NWVYKCFINRELNKLVRGTEVD 242
           P ++ +       +++  CF    +N   R T  +
Sbjct: 234 PPDVSMNLSPVALDFLNACF---TINPDNRPTARE 265

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 19/92 (20%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---------- 173
           V KG+ YLH   +   +H DIK  NIL+ E  + KI+DFG++  L+D G           
Sbjct: 111 VLKGLEYLHSNGQ---IHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFV 167

Query: 174 -----MAPECYK-RTPISVKADVYGYGIVLLE 199
                MAPE  +       KAD++ +GI  +E
Sbjct: 168 GTPCWMAPEVMEQVHGYDFKADIWSFGITAIE 199

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 18/108 (16%)

Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           S   NP     +   L VAKG+ YL        +H D+  +N ++DE +T K++DFGLA+
Sbjct: 90  SETHNPTVKDLIGFGLQVAKGMEYL---ASKKFVHRDLAARNCMLDESFTVKVADFGLAR 146

Query: 167 LLSDK---------------GCMAPECYKRTPISVKADVYGYGIVLLE 199
            + DK                 MA E  +    + K+DV+ +G++L E
Sbjct: 147 DIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 194

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 32/156 (20%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMA-------- 175
           +   + Y+H      ILH DIK  NI + +    K+ DFG++K+L  +  MA        
Sbjct: 110 IVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPY 166

Query: 176 ---PECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL 232
              PE  +    + K+D++  G VL E +   +    DA+ P  ++              
Sbjct: 167 YMSPELCQGVKYNFKSDIWALGCVLYE-LLTLKRT-FDATNPLNLV-------------- 210

Query: 233 NKLVRG--TEVDKKNLENLVKVGLWCVQDEPALRPS 266
            K+V+G  T V       L+ +    +Q +P  RP+
Sbjct: 211 VKIVQGNYTPVVSVYSSELISLVHSLLQQDPEKRPT 246

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 14/91 (15%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           I  +V  G+ YLH+E +   +H DIK  NIL+ E    K++DFG++  L+          
Sbjct: 103 ILREVLLGLEYLHEEGK---IHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFV 159

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLE 199
                MAPE  K++    KAD++  GI  +E
Sbjct: 160 GTPFWMAPEVIKQSGYDEKADIWSLGITAIE 190

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 11/90 (12%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           +I++ V +G+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 103 KISIAVLRGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 160

Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  M+PE  + T  +V++D++  G+ L+E
Sbjct: 161 TRSYMSPERLQGTHYTVQSDIWSLGLSLVE 190

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           +G+ Y H      ILH D+KPQNIL++     K++DFGLA+   
Sbjct: 109 RGLAYCHSHR---ILHRDLKPQNILINRDGVLKLADFGLARAFG 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 34/115 (29%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
            A ++   + YLH +    I+H D+KP+NIL+D+    KI+DFG AK+L           
Sbjct: 107 YAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKG 163

Query: 174 -------------------------MAPECYKRTPISVKADVYGYGIVLLETICC 203
                                    ++PE     P    +D++  G ++ + +  
Sbjct: 164 DATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTG 218

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 18/96 (18%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG--------LAKLLSD 170
           +IA+ + K + YLH +    ++H D+KP N+L++     K+ DFG        +AK + D
Sbjct: 107 KIAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTI-D 163

Query: 171 KGC---MAPE----CYKRTPISVKADVYGYGIVLLE 199
            GC   MAPE       +    VK+DV+  GI ++E
Sbjct: 164 AGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIE 199

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 16/97 (16%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA-------K 166
           WN  V++ L     + YLH E    I+H D+ P NI++ E     I+DFGLA       K
Sbjct: 116 WNIFVQMVL----ALRYLHKEKR--IVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESK 169

Query: 167 LLSDKGCM---APECYKRTPISVKADVYGYGIVLLET 200
           L S  G +    PE  K  P   KADV+ +G +L + 
Sbjct: 170 LTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQM 206

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 11/83 (13%)

Query: 128 ILYLHDECEPPILHCDIKPQNILMDEFWT-AKISDFGLAKLLSDKG---------C-MAP 176
           +L LH      ILH D+K QNIL+D+     KI DFG++K+LS K          C ++P
Sbjct: 111 LLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCYISP 170

Query: 177 ECYKRTPISVKADVYGYGIVLLE 199
           E  +  P + K+D++  G VL E
Sbjct: 171 ELCEGKPYNQKSDIWALGCVLYE 193

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 14/95 (14%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q   I  ++ KG+ YLH E +   +H DIK  N+L+ E    K++DFG+A  L+D     
Sbjct: 102 QIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKR 158

Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLE 199
                    MAPE  K++    KAD++  GI  +E
Sbjct: 159 NTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE 193

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 14/91 (15%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           I  ++ KG+ YLH E +   +H DIK  N+L+ E    K++DFG+A  L+D         
Sbjct: 106 ILREILKGLDYLHSERK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV 162

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLE 199
                MAPE  K++    KAD++  GI  +E
Sbjct: 163 GTPFWMAPEVIKQSAYDFKADIWSLGITAIE 193

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 15/93 (16%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------SDKG 172
           IA+   K + YL +E +  I+H D+KP NIL+D     K+ DFG++  L        D G
Sbjct: 112 IAVATVKALNYLKEELK--IIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAG 169

Query: 173 C---MAPE---CYKRTPISVKADVYGYGIVLLE 199
           C   MAPE      R    V++DV+  GI L E
Sbjct: 170 CRPYMAPERIDPSARDGYDVRSDVWSLGITLYE 202

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 11/90 (12%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
           +IA+ V +G+ YL++     I+H DIKP NIL++     K+ DFG++  L +        
Sbjct: 107 KIAVAVVEGLTYLYNVHR--IMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVG 164

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLE 199
               M+PE  +    +VK+DV+  GI ++E
Sbjct: 165 TSTYMSPERIQGGKYTVKSDVWSLGISIIE 194

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 14/85 (16%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-------LLSDKGC---MA 175
            G+ YLHD      +H DIK  NIL+D     K++DFG+AK         S KG    MA
Sbjct: 113 LGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMA 169

Query: 176 PECYKRT-PISVKADVYGYGIVLLE 199
           PE   +     + AD++  G  +LE
Sbjct: 170 PEVIAQQGGYGLAADIWSLGCTVLE 194

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 11/90 (12%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---DKGCM 174
           ++ +LDV + + YL        +H D+  +N+L+ E   AK+SDFGL K  S   D G +
Sbjct: 105 LKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL 161

Query: 175 -----APECYKRTPISVKADVYGYGIVLLE 199
                APE  +    S K+DV+ +GI+L E
Sbjct: 162 PVKWTAPEALREKKFSTKSDVWSFGILLWE 191

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 52.4 bits (125), Expect = 5e-08
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 14/88 (15%)

Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC--------- 173
           ++ KG+ YLH E +   +H DIK  N+L+ E    K++DFG+A  L+D            
Sbjct: 109 EILKGLDYLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTP 165

Query: 174 --MAPECYKRTPISVKADVYGYGIVLLE 199
             MAPE  +++    KAD++  GI  +E
Sbjct: 166 FWMAPEVIQQSAYDSKADIWSLGITAIE 193

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 22/98 (22%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------K 171
           ++ + + K + YL ++    ++H D+KP NIL+D     K+ DFG++  L D        
Sbjct: 118 KMTVAIVKALHYLKEKHG--VIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSA 175

Query: 172 GC---MAPECYKRTPIS-------VKADVYGYGIVLLE 199
           GC   MAPE   R           ++ADV+  GI L+E
Sbjct: 176 GCAAYMAPE---RIDPPDPNPKYDIRADVWSLGISLVE 210

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 52.4 bits (125), Expect = 8e-08
 Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 11/90 (12%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           ++++ V +G+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 107 KVSIAVLRGLAYLREKHQ--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 164

Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  M+PE  + T  SV++D++  G+ L+E
Sbjct: 165 TRSYMSPERLQGTHYSVQSDIWSMGLSLVE 194

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK--------- 171
           A  +  G+ +LH      I++ D+KP+N+L+D+    +ISD GLA  L            
Sbjct: 101 AAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGT 157

Query: 172 -GCMAPECYKRTPISVKADVYGYGIVLLETI 201
            G MAPE  +        D +  G  L E I
Sbjct: 158 PGYMAPEVLQGEVYDFSVDWFALGCTLYEMI 188

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 15/99 (15%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM 174
            Q V +A  +A+G+ YL        +H D+  +NIL+ E    KI+DFGLA+L+ D    
Sbjct: 103 PQLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYT 159

Query: 175 ------------APECYKRTPISVKADVYGYGIVLLETI 201
                       APE       ++K+DV+ +GI+L E +
Sbjct: 160 AREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIV 198

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 109 ERNPYWNQRVR-IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL 167
           E  P    +V+     + KG+ Y+H      I+H D+KP N+L+      KI+DFGLA+L
Sbjct: 92  EERPLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARL 148

Query: 168 LSD 170
            S+
Sbjct: 149 FSE 151

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 13/91 (14%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK--------- 171
           A ++  G+  LH E    I++ D+KP+NIL+D++   +ISD GLA  + +          
Sbjct: 108 AAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRGRVGT 164

Query: 172 -GCMAPECYKRTPISVKADVYGYGIVLLETI 201
            G MAPE  K    +   D +G G ++ E I
Sbjct: 165 VGYMAPEVVKNERYTFSPDWWGLGCLIYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 99  DLAYIIFCSAERNPYWNQ--RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 156
           DL Y I+   E NP + +         +  G+ +LH   +  I++ D+KP+N+L+D    
Sbjct: 79  DLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLH---QRRIIYRDLKPENVLLDNDGN 135

Query: 157 AKISDFGLAKLLSDK-----------GCMAPECYKRTPISVKADVYGYGIVLLETI 201
            +ISD GLA  L D            G MAPE  +        D +  G+ L E I
Sbjct: 136 VRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMI 191

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 11/90 (12%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 107 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 164

Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  M+PE  + T  SV++D++  G+ L+E
Sbjct: 165 TRSYMSPERLQGTHYSVQSDIWSMGLSLVE 194

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 11/72 (15%)

Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG------C-----MAPECYKRTPISVK 187
           I++ D+KP+NIL+DE    K++DFGL+K   D        C     MAPE   R   +  
Sbjct: 119 IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQS 178

Query: 188 ADVYGYGIVLLE 199
           AD + +G+++ E
Sbjct: 179 ADWWSFGVLMFE 190

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 13/88 (14%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL-------LSDKGCM-- 174
           + +G+ YLH +    I+H D+K +NI +++     I D G A+        L   G +  
Sbjct: 166 ILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGLAGTVET 222

Query: 175 -APECYKRTPISVKADVYGYGIVLLETI 201
            APE   R   + KAD++  GIVL E +
Sbjct: 223 NAPEVLARDKYNSKADIWSAGIVLFEML 250

Length = 357

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 15/86 (17%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------- 174
           +G+ + H      ILH D+KP+N+L++     K++DFGLA+                   
Sbjct: 109 QGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYR 165

Query: 175 APEC-YKRTPISVKADVYGYGIVLLE 199
           APE        S   D++  G +  E
Sbjct: 166 APELLLGDKGYSTPVDIWSVGCIFAE 191

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           +G+ YLH      ILH D+KP N+L+      K++DFGLA+
Sbjct: 113 RGLEYLHSNW---ILHRDLKPNNLLIASDGVLKLADFGLAR 150

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 15/99 (15%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++        +H D++  NIL+ E    KI+DFGLA+L+ D    
Sbjct: 102 NKLIDMAAQIAEGMAFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYT 158

Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETI 201
             +G        APE       ++K+DV+ +GI+L E +
Sbjct: 159 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV 197

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 15/98 (15%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK---- 171
           Q + +A  VA G+ YL  +     +H D+  +N+L+ E    K++DFGLA+++ +     
Sbjct: 104 QLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEA 160

Query: 172 --------GCMAPECYKRTPISVKADVYGYGIVLLETI 201
                      APE       S+K+DV+ +GI+L E +
Sbjct: 161 REGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIV 198

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 10/61 (16%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPIS 185
           +G+ +LH      I+H D+KPQNIL+      KI+DFGLA++ S +          T + 
Sbjct: 118 RGVDFLHSHR---IVHRDLKPQNILVTSDGQVKIADFGLARIYSFE-------MALTSVV 167

Query: 186 V 186
           V
Sbjct: 168 V 168

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 20/99 (20%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------------- 173
           G+ YLH      I+H DIK  NIL D     K+ DFG +K L                  
Sbjct: 116 GVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPY 172

Query: 174 -MAPECYKRTPISVKADVYGYGIVLLETICC---WENME 208
            M+PE         KADV+  G  ++E +     W   E
Sbjct: 173 WMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFE 211

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 48.8 bits (116), Expect = 8e-07
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM 174
           NQ V   + +A  + YLH   E  ILH D+K QN+ +      K+ D G+A++L ++  M
Sbjct: 102 NQVVEWFVQIAMALQYLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDM 158

Query: 175 A-----------PECYKRTPISVKADVYGYGIVLLE 199
           A           PE +   P + K+DV+  G  + E
Sbjct: 159 ASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYE 194

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 49.1 bits (117), Expect = 8e-07
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 17/100 (17%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL------ 168
           +   RI   V KG+ +L +E    I+H D+KP N+L++     K+ DFG++  L      
Sbjct: 102 DVLRRITYAVVKGLKFLKEEHN--IIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAK 159

Query: 169 SDKGC---MAPECYK------RTPISVKADVYGYGIVLLE 199
           ++ GC   MAPE  K          +V++DV+  G+ +LE
Sbjct: 160 TNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILE 199

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           RIA+ V KG+ YL       ILH D+KP N+L++     K+ DFG++  L +        
Sbjct: 99  RIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVG 155

Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
               MAPE        + +DV+  GI  +E
Sbjct: 156 TNAYMAPERISGEQYGIHSDVWSLGISFME 185

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 48.6 bits (116), Expect = 9e-07
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 14/93 (15%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-------- 171
           + L V K + +LH +    ++H DIK  +IL+      K+SDFG    +S +        
Sbjct: 120 VCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLV 176

Query: 172 GC---MAPECYKRTPISVKADVYGYGIVLLETI 201
           G    MAPE   R P   + D++  GI+++E +
Sbjct: 177 GTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 41/182 (22%)

Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD- 170
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ + + + 
Sbjct: 116 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET 172

Query: 171 -------KGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      MAPE  K    +  +D++ +G+VL      WE   + A +P    
Sbjct: 173 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVL------WEITSL-AEQP---- 221

Query: 219 LTNWVYKCFINRELNKLVR-GTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVM 272
                Y+   N ++ K V  G  +D+     + + +L+++   C Q  P +RP+   +V 
Sbjct: 222 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRM---CWQFNPKMRPTFLEIVN 273

Query: 273 ML 274
           +L
Sbjct: 274 LL 275

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 23/110 (20%)

Query: 116 QRVRIALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM 174
           Q V+ ALD A G+ YL  + C    +H D+  +N L+ E    KISDFG+++   D G  
Sbjct: 94  QLVKFALDAAAGMAYLESKNC----IHRDLAARNCLVGENNVLKISDFGMSR-QEDDGIY 148

Query: 175 APECYKRTPI-------------SVKADVYGYGIVLLET----ICCWENM 207
           +    K+ PI             S ++DV+ YGI+L ET    +C +  M
Sbjct: 149 SSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGM 198

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 130 YLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC--------MAPECYKR 181
           YLH      I++ D+KP+N+L+D     KI+DFG AK +  +          +APE    
Sbjct: 116 YLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEIILS 172

Query: 182 TPISVKADVYGYGIVLLETIC 202
                  D +  GI++ E + 
Sbjct: 173 KGYGKAVDWWALGILIYEMLA 193

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 19/94 (20%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKISDFGLAKLLSD-----K 171
           V+I+L    G+ ++HD     ILH DIK QNI + +    AK+ DFG+A+ L+D      
Sbjct: 108 VQISL----GLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAY 160

Query: 172 GC------MAPECYKRTPISVKADVYGYGIVLLE 199
            C      ++PE  +  P + K D++  G VL E
Sbjct: 161 TCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYE 194

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 19/92 (20%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL-AKLLSDK-------GC-- 173
           + + + +LH      ++H D+K  NIL+      K++DFG+ AK  S         G   
Sbjct: 112 MLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPY 168

Query: 174 -MAPE---C--YKRTPISVKADVYGYGIVLLE 199
            MAPE   C  +K  P   KAD++  GI L+E
Sbjct: 169 WMAPEVVACETFKDNPYDYKADIWSLGITLIE 200

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 14/82 (17%)

Query: 130 YLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-----KGC------MAPEC 178
           ++HD     ILH DIK QNI + +  T K+ DFG+A++L+      + C      ++PE 
Sbjct: 116 HVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEI 172

Query: 179 YKRTPISVKADVYGYGIVLLET 200
            +  P + K+D++  G VL E 
Sbjct: 173 CENRPYNNKSDIWALGCVLYEM 194

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIAL-DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 157
           DL +II       P   + +R  L  + +G+ Y+H      ++H D+KP N+L++E    
Sbjct: 93  DLHHIIHS---DQPLTEEHIRYFLYQLLRGLKYIHSAN---VIHRDLKPSNLLVNEDCEL 146

Query: 158 KISDFGLAKLLSDK 171
           +I DFG+A+ LS  
Sbjct: 147 RIGDFGMARGLSSS 160

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 22/109 (20%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMA---- 175
           +  DV + + YL        +H D+  +N L+ E    K+SDFGLA+ + D    +    
Sbjct: 105 MCSDVCEAMEYLESNG---FIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGT 161

Query: 176 --------PECYKRTPISVKADVYGYGIVLLETICC-------WENMEI 209
                   PE +  +  S K+DV+ +G+++ E           + N E+
Sbjct: 162 KFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEV 210

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 34/168 (20%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DFGLA+L+ D     
Sbjct: 103 QLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 159

Query: 171 -KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV 223
            +G        APE       ++K+DV+ +GI+L E       +      P         
Sbjct: 160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE-------LTTKGRVP--------- 203

Query: 224 YKCFINRE-LNKLVRGTEV--DKKNLENLVKVGLWCVQDEPALRPSMK 268
           Y   +NRE L+++ RG  +    +  E+L  +   C + EP  RP+ +
Sbjct: 204 YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 251

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
           +G+ YLH      ILH DIK  NIL++     K++DFGLA+  + +  
Sbjct: 111 EGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPYTKRNS 155

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 28/157 (17%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM--------- 174
           +A+G+ ++        +H D++  NIL+      KI+DFGLA+++ D             
Sbjct: 111 IAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPI 167

Query: 175 ---APECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRE 231
              APE       ++K+DV+ +GI+L+E +          S PE I            R 
Sbjct: 168 KWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVI------------RA 215

Query: 232 LNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
           L +  R    +    E L  + + C ++ P  RP+ +
Sbjct: 216 LERGYRMPRPENCP-EELYNIMMRCWKNRPEERPTFE 251

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 22/100 (22%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG-------- 172
            + +AKG+ YL    E  ++H D+  +N+L+      KI+DFGLAKLL            
Sbjct: 115 CVQIAKGMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGG 171

Query: 173 -----CMAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
                 MA E       + K+DV+ YG+        WE M
Sbjct: 172 KVPIKWMALESILHRIYTHKSDVWSYGVT------VWELM 205

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 26/113 (23%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA---KISDFGLAKLLSDKGC- 173
           +     + +G+ YLH+     I+H D+K  N+L+D   T    +I+DFG A  L+ KG  
Sbjct: 106 INYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDS--TGQRLRIADFGAAARLAAKGTG 160

Query: 174 --------------MAPECYKRTPISVKADVYGYGIVLLETICC---WENMEI 209
                         MAPE  +        DV+  G V++E       W   + 
Sbjct: 161 AGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKH 213

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 11/66 (16%)

Query: 115 NQRVR--------IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           N  V+          L + +GI YLH+     ILH DIK  NIL+D     KI+DFGLA+
Sbjct: 107 NPSVKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADFGLAR 163

Query: 167 LLSDKG 172
                 
Sbjct: 164 PYDGPP 169

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 13/85 (15%)

Query: 128 ILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----DKG---C-----M 174
           +L +H      ++H DIK  NIL+      K+ DFG +K+ +     D G   C     +
Sbjct: 153 LLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYV 212

Query: 175 APECYKRTPISVKADVYGYGIVLLE 199
           APE ++R P S KAD++  G++L E
Sbjct: 213 APEIWRRKPYSKKADMFSLGVLLYE 237

Length = 496

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 13/91 (14%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK--------- 171
           A ++  G+  LH E     ++ D+KP+NIL+D++   +ISD GLA  + +          
Sbjct: 108 AAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGRVGT 164

Query: 172 -GCMAPECYKRTPISVKADVYGYGIVLLETI 201
            G MAPE       ++  D +G G ++ E I
Sbjct: 165 VGYMAPEVLNNQRYTLSPDYWGLGCLIYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 130 YLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG-----C-----MAPECY 179
           YLH+     I++ D+KP+N+L+D     K+ DFG AK L         C     +APE  
Sbjct: 108 YLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEII 164

Query: 180 KRTPISVKADVYGYGIVLLETIC 202
                    D +  GI+L E + 
Sbjct: 165 LNKGYDFSVDYWSLGILLYELLT 187

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 24/103 (23%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGCM 174
            R+ L V   +   H++    I+H D+KPQNI++        AK+ DFG+  LL      
Sbjct: 82  GRLMLQVLDALACAHNQ---GIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRDA 138

Query: 175 ------------------APECYKRTPISVKADVYGYGIVLLE 199
                             APE  +  P++  +D+Y +G++ LE
Sbjct: 139 DVATLTRTTEVLGTPTYCAPEQLRGEPVTPNSDLYAWGLIFLE 181

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 15/98 (15%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
             V +A  VA G+ Y+        +H D++  NIL+ +    KI+DFGLA+L+ D     
Sbjct: 103 NLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTA 159

Query: 171 -KGC------MAPECYKRTPISVKADVYGYGIVLLETI 201
            +G        APE       ++K+DV+ +GI+L E +
Sbjct: 160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELV 197

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 13/96 (13%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-----LLSD 170
           Q ++ A DVA G+ YL ++     +H D+  +N+L+ E   +KI+DFGL++     +   
Sbjct: 120 QLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKT 176

Query: 171 KG-----CMAPECYKRTPISVKADVYGYGIVLLETI 201
            G      MA E    +  + K+DV+ +G++L E +
Sbjct: 177 MGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIV 212

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 15/92 (16%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----- 174
           + LDV +G+ YL       ++H D+  +N L+ E    K+SDFG+ + + D         
Sbjct: 105 MCLDVCEGMAYLESSN---VIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGT 161

Query: 175 -------APECYKRTPISVKADVYGYGIVLLE 199
                  +PE +  +  S K+DV+ +G+++ E
Sbjct: 162 KFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWE 193

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 34/167 (20%)

Query: 124 VAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----KGC--- 173
           VAKG+ +L  + C    +H D+  +N+L+      KI DFGLA+ +++D     KG    
Sbjct: 150 VAKGMAFLASKNC----IHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARL 205

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN 229
               MAPE       + ++DV+ YGI+L      WE   + ++    + + +  YK    
Sbjct: 206 PVKWMAPESIFNCVYTFESDVWSYGILL------WEIFSLGSNPYPGMPVDSKFYK---- 255

Query: 230 RELNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
                +  G  + +       +  +   C   +P  RP+ K +V ++
Sbjct: 256 ----LIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLI 298

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 14/97 (14%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK---- 171
           Q   + L V + + YLH++    ++H DIK  +IL+      K+SDFG    +S +    
Sbjct: 119 QIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKR 175

Query: 172 -------GCMAPECYKRTPISVKADVYGYGIVLLETI 201
                    MAPE   R P   + D++  GI+++E I
Sbjct: 176 KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMI 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 14/84 (16%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMA----------- 175
           G+ ++H++    +LH DIK +NI + +    K+ DFG A+LL+  G  A           
Sbjct: 112 GVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVP 168

Query: 176 PECYKRTPISVKADVYGYGIVLLE 199
           PE ++  P + K+D++  G +L E
Sbjct: 169 PEIWENMPYNNKSDIWSLGCILYE 192

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 96  LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 155
           L  D A+ I  S        Q +  A DVA+G+ YL    +   +H D+  +NIL+ E +
Sbjct: 105 LETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENY 161

Query: 156 TAKISDFGLAK-----LLSDKG-----CMAPECYKRTPISVKADVYGYGIVLLETI 201
            AKI+DFGL++     +    G      MA E    +  +  +DV+ YG++L E +
Sbjct: 162 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 217

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 46.2 bits (109), Expect = 7e-06
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 15/90 (16%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------KGC---- 173
           +A+G+ Y+  +     +H D++  N+L+ E    KI+DFGLA+++ D      +G     
Sbjct: 112 IAEGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPI 168

Query: 174 --MAPECYKRTPISVKADVYGYGIVLLETI 201
              APE       ++K+DV+ +GI+L E +
Sbjct: 169 KWTAPEAINFGSFTIKSDVWSFGILLYEIV 198

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 38/166 (22%)

Query: 79  SSVAMR-GSKPSTEAALDLPWDLAYIIFCSAERNPYW----NQRVRIALDVAKGILYLHD 133
           + V MR  S  S++++               +    W    +  +R +  VA+G+ +L  
Sbjct: 180 TYVEMRPVSSSSSQSSDSK---------DEEDTEDSWPLDLDDLLRFSSQVAQGMDFLAS 230

Query: 134 E-CEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----KG-------CMAPECY 179
           + C    +H D+  +N+L+ +   AKI DFGLA+ +++D     KG        MAPE  
Sbjct: 231 KNC----IHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESI 286

Query: 180 KRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK 225
                +V++DV+ YGI+L      WE   +  S    I++ +  YK
Sbjct: 287 FDCVYTVQSDVWSYGILL------WEIFSLGKSPYPGILVNSKFYK 326

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 15/98 (15%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +A  +A G+ Y+        +H D++  NIL+ +    KI+DFGLA+L+ D     
Sbjct: 103 QLVDMAAQIADGMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTA 159

Query: 171 -KGC------MAPECYKRTPISVKADVYGYGIVLLETI 201
            +G        APE       ++K+DV+ +GI+L E +
Sbjct: 160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELV 197

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 45.8 bits (108), Expect = 8e-06
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 13/91 (14%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK--------- 171
           A ++  G+ ++H+     +++ D+KP NIL+DE    +ISD GLA   S K         
Sbjct: 103 ATEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTH 159

Query: 172 GCMAPECYKR-TPISVKADVYGYGIVLLETI 201
           G MAPE  ++ T     AD +  G +L + +
Sbjct: 160 GYMAPEVLQKGTAYDSSADWFSLGCMLFKLL 190

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 45.7 bits (108), Expect = 9e-06
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 35/173 (20%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPE 177
           VR  +D+A G+ YL  +     +H D+  +N +++E  T  ++DFGL+K +         
Sbjct: 116 VRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQG 172

Query: 178 CYKRTPI-------------SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
           C  + P+             +  +DV+ +G+ +      WE M    +           Y
Sbjct: 173 CASKLPVKWLALESLADNVYTTHSDVWAFGVTM------WEIMTRGQTP----------Y 216

Query: 225 KCFINREL-NKLVRGTEVDK--KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               N E+ N L++G  + +    LE++ ++   C   EP  RPS + +   L
Sbjct: 217 AGVENSEIYNYLIKGNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQL 269

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 17/117 (14%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL------- 168
           Q +  A  + +G+ YLH +     +H D+  +N+L+D     KI DFGLAK +       
Sbjct: 108 QLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 164

Query: 169 --SDKG-----CMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
              + G       A EC K    S  +DV+ +G+ L E +   ++ +    K EE+I
Sbjct: 165 RVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMI 221

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 19/107 (17%)

Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           S +R  ++   +  ALD      YLH E    +++ D+K +N+++D+    KI+DFGL K
Sbjct: 93  SEDRARFYGAEIVSALD------YLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCK 144

Query: 167 L-LSDKGCM----------APECYKRTPISVKADVYGYGIVLLETIC 202
             + D   M          APE  +        D +G G+V+ E +C
Sbjct: 145 EGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 191

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 35/171 (20%)

Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD- 170
           P   + +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + + + 
Sbjct: 116 PSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 172

Query: 171 -------KGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL      WE   + A +P    
Sbjct: 173 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVL------WEIATL-AEQP---- 221

Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPS 266
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RPS
Sbjct: 222 -----YQGMSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPS 267

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 32/109 (29%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA------------ 165
           + I   +   I Y+H +    +LH D+KP NIL+  F    I D+G A            
Sbjct: 116 LSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLD 172

Query: 166 -----------------KLLSDKGCMAPECYKRTPISVKADVYGYGIVL 197
                            K++     MAPE     P S   D+Y  G++L
Sbjct: 173 IDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVIL 221

Length = 932

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 22/107 (20%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
             Q V +   +A G+ YL +      +H D+  +NIL++     K+SDFGL++ L D   
Sbjct: 105 VGQLVGMLRGIASGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEA 161

Query: 174 -------------MAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
                         APE       +  +DV+ +GIV+      WE M
Sbjct: 162 TYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVM------WEVM 202

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 16/99 (16%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-------L 167
            + ++++LD A G+ YL  +     +H D+  +N L+ E    KISDFG+++        
Sbjct: 93  KKLLQMSLDAAAGMEYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYT 149

Query: 168 LSDK------GCMAPECYKRTPISVKADVYGYGIVLLET 200
           +SD          APE       + ++DV+ YGI+L ET
Sbjct: 150 VSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWET 188

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 20/107 (18%)

Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           S +R  ++   +  AL       YLH  C+  +++ D+K +N+++D+    KI+DFGL K
Sbjct: 93  SEDRARFYGAEIVSALG------YLH-SCD--VVYRDLKLENLMLDKDGHIKITDFGLCK 143

Query: 167 L-LSDKGCM----------APECYKRTPISVKADVYGYGIVLLETIC 202
             +SD   M          APE  +        D +G G+V+ E +C
Sbjct: 144 EGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 190

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 7/45 (15%)

Query: 127 GILYLHDECEPPILHCDIKPQNILM----DEFWTAKISDFGLAKL 167
           G+ YLH      +LH D+KP NIL+     E    KI D GLA+L
Sbjct: 120 GVHYLHSNW---VLHRDLKPANILVMGEGPERGVVKIGDLGLARL 161

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 16/91 (17%)

Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKG- 172
           + +AKG++YL    E  ++H D+  +N+L+      KI+DFGLA+LL        +D G 
Sbjct: 116 VQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGK 172

Query: 173 ----CMAPECYKRTPISVKADVYGYGIVLLE 199
                MA EC      + ++DV+ YG+ + E
Sbjct: 173 MPIKWMALECIHYRKFTHQSDVWSYGVTIWE 203

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 17/93 (18%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG-------- 172
           A+ +A G+ YL  +     +H D+  +NIL+      KI DFGL + L            
Sbjct: 103 AVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEH 159

Query: 173 ------CMAPECYKRTPISVKADVYGYGIVLLE 199
                   APE  +    S  +DV+ +G+ L E
Sbjct: 160 LKVPFAWCAPESLRTRTFSHASDVWMFGVTLWE 192

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           +GI Y H      +LH D+KPQN+L+D     K++DFGLA+
Sbjct: 110 QGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 13/89 (14%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK--------- 171
           A ++  G+ ++H+     +++ D+KP NIL+DE    +ISD GLA   S K         
Sbjct: 103 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTH 159

Query: 172 GCMAPECY-KRTPISVKADVYGYGIVLLE 199
           G MAPE   K       AD +  G +L +
Sbjct: 160 GYMAPEVLQKGVAYDSSADWFSLGCMLFK 188

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 17/93 (18%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKG 172
           A  VA G+ YL        +H D+  +N+L+     AKISDFG+++ L        +   
Sbjct: 101 AHQVAMGMAYLE---SKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTA 157

Query: 173 ------CMAPECYKRTPISVKADVYGYGIVLLE 199
                   APEC      S K+DV+ YG+ L E
Sbjct: 158 GRWPLKWYAPECINYGKFSSKSDVWSYGVTLWE 190

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 16/96 (16%)

Query: 117 RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA-KLLSDKGC-- 173
           ++ IA  VA G+ YL +      +H D+  +N L+ E    KI+DFGL+  + S      
Sbjct: 132 QLCIAKQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKA 188

Query: 174 ----------MAPECYKRTPISVKADVYGYGIVLLE 199
                     M PE       + ++DV+ YG+VL E
Sbjct: 189 SENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWE 224

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 13/84 (15%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------A 175
           +G+ +LH  C   I+H D+KP+NIL+      K++DFGLA++ S +  +          A
Sbjct: 119 RGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARIYSCQMALTPVVVTLWYRA 175

Query: 176 PECYKRTPISVKADVYGYGIVLLE 199
           PE   ++  +   D++  G +  E
Sbjct: 176 PEVLLQSTYATPVDMWSVGCIFAE 199

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG 172
           + I Y H      I+H DIKP+NIL+ E    K+ DFG A+ L  + 
Sbjct: 111 QAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFARALRARP 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 13/96 (13%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-----LLSD 170
           Q +  A DVA+G+ YL    +   +H D+  +NIL+ E + AKI+DFGL++     +   
Sbjct: 113 QLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKT 169

Query: 171 KG-----CMAPECYKRTPISVKADVYGYGIVLLETI 201
            G      MA E    +  +  +DV+ YG++L E +
Sbjct: 170 MGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 205

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 17/90 (18%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---------- 173
           V+ G+ YL        +H D+  +N+L+     AKISDFGL+K L               
Sbjct: 104 VSMGMKYLE---GKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKW 160

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLE 199
                APEC      S ++DV+ YGI + E
Sbjct: 161 PLKWYAPECINFRKFSSRSDVWSYGITMWE 190

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
           DL + I+   E      + V  A ++  G+  LH E    I++ D+KP+NIL+D+    +
Sbjct: 86  DLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIR 142

Query: 159 ISDFGLAKLLSDK----------GCMAPECYKRTPISVKADVYGYGIVLLETI 201
           ISD GLA  + +           G MAPE  K    +   D +  G +L E I
Sbjct: 143 ISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 17/100 (17%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--- 172
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 107 QLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAA 163

Query: 173 -----------CMAPECYKRTPISVKADVYGYGIVLLETI 201
                        APE       +  +DV+ YGIV+ E +
Sbjct: 164 YTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 203

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 10/84 (11%)

Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK--LLSDK-----GCMA 175
           +V  G+  LH      I+H DIKP+N+L+D+    K++DFGL++  L + K       +A
Sbjct: 105 EVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFVGTPDYLA 161

Query: 176 PECYKRTPISVKADVYGYGIVLLE 199
           PE          +D +  G V+ E
Sbjct: 162 PETILGVGDDKMSDWWSLGCVIFE 185

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           + L + +G+ YLH+     I+H D+K  N+L+ +    KI+DFGLA+    
Sbjct: 113 LMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYGL 160

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 17/90 (18%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK------------ 171
           V+ G+ YL    E   +H D+  +N+L+     AKISDFGL+K L               
Sbjct: 104 VSMGMKYLE---ETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKW 160

Query: 172 --GCMAPECYKRTPISVKADVYGYGIVLLE 199
                APEC      S K+DV+ +G+++ E
Sbjct: 161 PVKWYAPECMNYYKFSSKSDVWSFGVLMWE 190

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           +A  +  GI YLH      I+H DIKP N+L++     KI+DFG++++L+
Sbjct: 173 VARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILA 219

Length = 353

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 11/80 (13%)

Query: 130 YLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG---CMAPECYKRTPISV 186
           YLH   +  I++ D+KP+N+L+D     K++DFG AK + D+    C  PE      I  
Sbjct: 133 YLH-SKD--IIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQS 189

Query: 187 KA-----DVYGYGIVLLETI 201
           K      D +  G++L E I
Sbjct: 190 KGHGKAVDWWTMGVLLYEFI 209

Length = 329

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 22/115 (19%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--SDKGC 173
           Q V +A+ +A G+ YLH      ++H DI  +N ++DE    KI+D  L++ L   D  C
Sbjct: 118 QLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHC 174

Query: 174 -----------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI 217
                      MA E       S  +DV+ +G++L      WE M +  +   EI
Sbjct: 175 LGDNENRPVKWMALESLVNKEYSSASDVWSFGVLL------WELMTLGQTPYVEI 223

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 40/174 (22%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKISDFGLAK-------- 166
           +  A DVAKG  YL    E   +H DI  +N L+        AKI+DFG+A+        
Sbjct: 119 LFCARDVAKGCKYLE---ENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYY 175

Query: 167 ------LLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                 +L  K  M PE +     + K DV+ +G++       WE   +           
Sbjct: 176 RKGGRAMLPIK-WMPPEAFLDGIFTSKTDVWSFGVL------LWEIFSLGYMP------- 221

Query: 221 NWVYKCFINRE-LNKLVRGTEVDK-KNLENLV-KVGLWCVQDEPALRPSMKCVV 271
              Y    N+E +  +  G  +D  K     V ++   C Q  P  RP+   ++
Sbjct: 222 ---YPGRTNQEVMEFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATIL 272

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 43/171 (25%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---- 173
           +  A  +++G+ YL    E  ++H D+  +N+L+ E    KISDFGL++ + ++      
Sbjct: 130 ISFAWQISRGMQYL---AEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKR 186

Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDAS-----KPEEIIL 219
                    MA E       + ++DV+ +G++       WE + +  +      PE    
Sbjct: 187 SKGRIPVKWMAIESLFDHIYTTQSDVWSFGVL------LWEIVTLGGNPYPGIAPE---- 236

Query: 220 TNWVYKCFINRELNKLVRGTEVDKKN--LENLVKVGLWCVQDEPALRPSMK 268
                     R  N L  G  +++     E +  + L C + EP  RP+  
Sbjct: 237 ----------RLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFA 277

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 13/86 (15%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPEC---YKRTP 183
           GI +LH      I+H D+KP NI++    T KI DFGLA+       M P     Y R P
Sbjct: 130 GIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 186

Query: 184 -------ISVKADVYGYGIVLLETIC 202
                       D++  G ++ E I 
Sbjct: 187 EVILGMGYKENVDIWSVGCIMGEMIR 212

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 11/80 (13%)

Query: 128 ILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG---C-----MAPECY 179
           + YLH +    I++ D+KP+NIL+D+    K++DFG AK L D+    C     +APE  
Sbjct: 114 LEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVI 170

Query: 180 KRTPISVKADVYGYGIVLLE 199
           +    +   D +  GI++ E
Sbjct: 171 QSKGHNKAVDWWALGILIYE 190

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 16/96 (16%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-----LLSDKG 172
           +++  + A G+ YL  +     +H D+  +N L+ E    KISDFG+++     + +  G
Sbjct: 97  IQMVENAAAGMEYLESKH---CIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTG 153

Query: 173 CM--------APECYKRTPISVKADVYGYGIVLLET 200
            M        APE       S ++DV+ +GI+L E 
Sbjct: 154 GMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEA 189

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 16/97 (16%)

Query: 116 QRVRIA---LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG 172
           Q V IA       +G+ YLH       +H DIK  NIL+ E  T K++DFG A L+S   
Sbjct: 113 QEVEIAAICHGALQGLAYLHSHER---IHRDIKAGNILLTEPGTVKLADFGSASLVSPAN 169

Query: 173 C-------MAPE---CYKRTPISVKADVYGYGIVLLE 199
                   MAPE            K DV+  GI  +E
Sbjct: 170 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIE 206

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 35/173 (20%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-----KG 172
           ++  +D+A G+ YL +      +H D+  +N ++ E  T  ++DFGL+K +       +G
Sbjct: 116 LKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQG 172

Query: 173 C--------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
                    +A E       + K+DV+ +G+ +      WE      +           Y
Sbjct: 173 RIAKMPVKWIAIESLADRVYTSKSDVWAFGVTM------WEIATRGQTP----------Y 216

Query: 225 KCFINREL-NKLVRGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
               N E+ + L  G  + +    L+ L  +   C + +P  RP+   +  +L
Sbjct: 217 PGVENHEIYDYLRHGNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVL 269

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 24/109 (22%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 117 ICKGMEYLG---SKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGES 173

Query: 175 -----APECYKRTPISVKADVYGYGIVLLE--TICCWENMEIDASKPEE 216
                APE    +  SV +DV+ +G+VL E  T       +   S P E
Sbjct: 174 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYS-----DKSCSPPAE 217

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 36/171 (21%)

Query: 121 ALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----KG- 172
           +  VA+G+ +L   +C    +H D+  +NIL+ E    KI DFGLA+ +  D     KG 
Sbjct: 179 SFQVARGMEFLASRKC----IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGD 234

Query: 173 ------CMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC 226
                  MAPE       + ++DV+ +G++L      WE   + AS    +         
Sbjct: 235 ARLPLKWMAPESIFDKVYTTQSDVWSFGVLL------WEIFSLGASPYPGVQ-------- 280

Query: 227 FINREL-NKLVRGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
            I+ E   +L  GT +         +  + L C  + P  RP+   +V +L
Sbjct: 281 -IDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEIL 330

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           GIL+ H      +LH D+KPQN+L+D     K++DFGLA+
Sbjct: 113 GILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLAR 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 19/103 (18%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM 174
           Q+++ A+ + KG+ YL        +H D+  +N+L++     KI DFGL K + +DK   
Sbjct: 110 QQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYY 166

Query: 175 -------------APECYKRTPISVKADVYGYGIVLLE--TIC 202
                        APEC  ++   + +DV+ +G+ L E  T C
Sbjct: 167 TVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYC 209

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 14/92 (15%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL------LSDKGC- 173
           A +VA  I YLH      I++ D+KP+NIL+D      ++DFGL K        +   C 
Sbjct: 102 AAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCG 158

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETI 201
               +APE  ++ P     D +  G VL E +
Sbjct: 159 TPEYLAPEVLRKEPYDRTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           +G+ Y H      +LH D+KPQN+L+ E    K++DFGLA+
Sbjct: 114 RGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 19/118 (16%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK---- 171
           Q V +   +A G+ YL    E   +H D+  +NIL++     K+SDFGL++ L D     
Sbjct: 107 QLVGMLRGIAAGMKYL---SEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDP 163

Query: 172 ------GC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI 217
                 G        APE       +  +DV+ YGIV+ E +   E    D S  + I
Sbjct: 164 TYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVI 221

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           +G+ YLH      ++H D+KP NIL++     KI DFGLA+
Sbjct: 114 RGLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLAR 151

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPEC---YKRTP 183
           GI +LH      I+H D+KP NI++    T KI DFGLA+       M P     Y R P
Sbjct: 138 GIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194

Query: 184 ISV-------KADVYGYGIVLLETIC 202
             +         D++  G ++ E I 
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMIK 220

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 16/95 (16%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--SDK---- 171
           + IA+ +A G+ YL        +H D+  +N L+ E  T KISDFGL++ +  +D     
Sbjct: 127 LHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQ 183

Query: 172 -------GCMAPECYKRTPISVKADVYGYGIVLLE 199
                    M PE       + ++D++ +G+VL E
Sbjct: 184 SKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWE 218

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 22/98 (22%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL-LSDKGC--------- 173
           +   + YLH      I+H D+KP NIL+D     K++DFGL+K+ L  +           
Sbjct: 102 IVLALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKED 158

Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLETIC 202
                    +APE       S   D +  G +L E + 
Sbjct: 159 KRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLV 196

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 14/97 (14%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK------LLS 169
           Q V  A +++ G+ +LH      I++ D+K  N+++D     KI+DFG+ K      + +
Sbjct: 102 QAVFYAAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTT 158

Query: 170 DKGC-----MAPECYKRTPISVKADVYGYGIVLLETI 201
              C     +APE     P     D + YG++L E +
Sbjct: 159 RTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEML 195

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 42.8 bits (100), Expect = 9e-05
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 20/107 (18%)

Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           S +R  ++   +  ALD      YLH      I++ D+K +N+++D+    KI+DFGL K
Sbjct: 93  SEDRTRFYGAEIVSALD------YLH---SGKIVYRDLKLENLMLDKDGHIKITDFGLCK 143

Query: 167 L-LSDKGCM----------APECYKRTPISVKADVYGYGIVLLETIC 202
             ++D   M          APE  +        D +G G+V+ E +C
Sbjct: 144 EGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 190

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 115 NQRVRIALDVAK--------GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           N+ V+  L   K        G+ Y+H      ILH D+K  NIL+ +    K++DFGLA+
Sbjct: 111 NKNVKFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFGLAR 167

Query: 167 LLSDKGCMAPECY 179
             S      P  Y
Sbjct: 168 AFSLSKNSKPNRY 180

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 14/89 (15%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA-----------KLLSDKG 172
           V + + YLH +    ++H DIK  +IL+      K+SDFG              L+    
Sbjct: 126 VLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPY 182

Query: 173 CMAPECYKRTPISVKADVYGYGIVLLETI 201
            MAPE   RTP   + D++  GI+++E +
Sbjct: 183 WMAPEVISRTPYGTEVDIWSLGIMVIEMV 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 20/107 (18%)

Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           + ER  ++   +  AL+      YLH      +++ DIK +N+++D+    KI+DFGL K
Sbjct: 93  TEERARFYGAEIVSALE------YLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCK 143

Query: 167 L-LSDKGCM----------APECYKRTPISVKADVYGYGIVLLETIC 202
             +SD   M          APE  +        D +G G+V+ E +C
Sbjct: 144 EGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 190

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 15/105 (14%)

Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
              +    +Q + +  DV +G+ YL  +     +H D+  +N L+D+    K+SDFGL++
Sbjct: 92  EHGKRFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSR 148

Query: 167 LLSDKGCM------------APECYKRTPISVKADVYGYGIVLLE 199
            + D                 PE    +  S K+DV+ +G+++ E
Sbjct: 149 YVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWE 193

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 15/103 (14%)

Query: 111 NPYWNQRVRI--ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
           NP ++++  I  A ++  G+  L  E    I++ D+KP+NIL+D+    +ISD GLA  +
Sbjct: 96  NPGFDEQRAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHIRISDLGLAVQI 152

Query: 169 SDK----------GCMAPECYKRTPISVKADVYGYGIVLLETI 201
            +           G MAPE       +   D +G G ++ E I
Sbjct: 153 PEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 14/93 (15%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK---LLSDKG---C- 173
           A ++  G+ +LH   E  I++ D+K  N+L+D     KI+DFG+ K   L        C 
Sbjct: 102 AAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCG 158

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETIC 202
               +APE     P     D +  G++L E + 
Sbjct: 159 TPDYIAPEILSYQPYGPAVDWWALGVLLYEMLA 191

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 16/95 (16%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----KGC 173
           V  A  VA+G+ +L  +     +H D+  +N+L+ E    KI+DFGLA+ +      +  
Sbjct: 135 VSFAYQVARGMEFLASK---KCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKT 191

Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLE 199
                    MAPE       + ++DV+ +G++L E
Sbjct: 192 TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWE 226

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL 167
           +G+ YLH      ILH DIKP N+L++     KI DFGLA++
Sbjct: 114 RGLKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLARV 152

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 17/88 (19%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK--------GC---M 174
           KG+ YLH   E   +H DIK  NIL+ E    K++DFG++  L+          G    M
Sbjct: 112 KGLAYLH---ETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWM 168

Query: 175 APECY---KRTPISVKADVYGYGIVLLE 199
           APE     ++     K D++  GI  +E
Sbjct: 169 APEVAAVERKGGYDGKCDIWALGITAIE 196

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 17/114 (14%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--- 172
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 108 QLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGT 164

Query: 173 -----------CMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPE 215
                        APE       +  +DV+ +GIV+ E +   E    D S  E
Sbjct: 165 YTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHE 218

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 14/97 (14%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA---------- 165
           Q   + L V K +  LH +    ++H DIK  +IL+      K+SDFG            
Sbjct: 117 QIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR 173

Query: 166 -KLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETI 201
             L+     MAPE   R P   + D++  GI+++E +
Sbjct: 174 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMV 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 15/94 (15%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK------ 171
           + +A  ++  + YL  +     +H D+  +N L+ E    K++DFGL++L++        
Sbjct: 107 LYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 163

Query: 172 ------GCMAPECYKRTPISVKADVYGYGIVLLE 199
                    APE       S+K+DV+ +G++L E
Sbjct: 164 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 197

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           KG+ + H      +LH D+KPQN+L+++    K++DFGLA+
Sbjct: 110 KGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 17/90 (18%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKISDFGLAKLLSD--------KGC- 173
           + +G+ YLHD     I+H DIK  N+L++ +    KISDFG +K L+          G  
Sbjct: 117 ILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTL 173

Query: 174 --MAPECYKRTP--ISVKADVYGYGIVLLE 199
             MAPE   + P      AD++  G  ++E
Sbjct: 174 QYMAPEVIDKGPRGYGAPADIWSLGCTIVE 203

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 3/41 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           KGI + H   E  +LH D+KPQN+L+++    K++DFGLA+
Sbjct: 111 KGIAFCH---ENRVLHRDLKPQNLLINKRGELKLADFGLAR 148

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 12/103 (11%)

Query: 109 ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
           E++  +  ++ +A+D  KG+  L+     P  + ++   + L+ E +  KI   GL K+L
Sbjct: 116 EKDLSFKTKLDMAIDCCKGLYNLYKYTNKP--YKNLTSVSFLVTENYKLKIICHGLEKIL 173

Query: 169 S-----DKGCMAPECYKR-----TPISVKADVYGYGIVLLETI 201
           S     +   M    YK      +  ++K D+Y  G+VL E  
Sbjct: 174 SSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIF 216

Length = 283

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 116 QRVRIAL-DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG 172
            RVR  L  + +GI + H      I+H DIKP+NIL+ +    K+ DFG A+ L+  G
Sbjct: 100 SRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 3/44 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           +G+ Y H   +  ILH D+KPQN+L++E    K++DFGLA+  S
Sbjct: 114 RGLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLARAKS 154

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           K + Y+H      ++H D+KP NIL++     K++DFGLA+ LS+
Sbjct: 118 KALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLARSLSE 159

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 36/171 (21%)

Query: 121 ALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----KGC 173
           +  VA+G+ +L   +C    +H D+  +NIL+ E    KI DFGLA+ +  D     KG 
Sbjct: 180 SFQVARGMEFLASRKC----IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGS 235

Query: 174 -------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC 226
                  MAPE       + ++DV+ +G++L      WE   + AS    +         
Sbjct: 236 ARLPLKWMAPESIFDKVYTTQSDVWSFGVLL------WEIFSLGASPYPGVQ-------- 281

Query: 227 FINRELNKLVR-GTEVDKKNLEN--LVKVGLWCVQDEPALRPSMKCVVMML 274
            IN E  + ++ GT +         + ++ L C Q +P  RP+   +V +L
Sbjct: 282 -INEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFSALVEIL 331

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 18/97 (18%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG-LAKLLSDKGC--------- 173
           +A+ +L +H   +   +H DIKP+N+L+D     K++DFG  A+L ++K           
Sbjct: 108 LAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTP 167

Query: 174 --MAPEC------YKRTPISVKADVYGYGIVLLETIC 202
             +APE         +    V+ D +  G++  E I 
Sbjct: 168 DYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIY 204

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 18/104 (17%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC- 173
           NQ     + +  G+ Y+H   +  ILH D+K +NI +      KI DFG+++LL    C 
Sbjct: 106 NQVCEWFIQLLLGVHYMH---QRRILHRDLKAKNIFLKNN-LLKIGDFGVSRLLMGS-CD 160

Query: 174 -----------MAPECYKRTPISVKADVYGYGIVLLETICCWEN 206
                      M+PE  K      K+D++  G +L E +CC  +
Sbjct: 161 LATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYE-MCCLAH 203

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 27/108 (25%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-----TAKISDFGLAKLL--SD 170
           + I LDVAKG +YL        +H D+  +N L+ E         KI DFGLA+ +  SD
Sbjct: 109 LDICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSD 165

Query: 171 ----KG-------CMAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
               +G        MAPE       + ++DV+ +G++       WE +
Sbjct: 166 YYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVL------MWEIL 207

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 26/103 (25%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--SDKGCMAPECYKR 181
           +AKG+ YL +     ++H ++  +NIL+      +I+DFG+A LL   DK     E   +
Sbjct: 118 IAKGMYYLEEHR---MVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEH--K 172

Query: 182 TPI-------------SVKADVYGYGIVLLETICCWENMEIDA 211
           TPI             + ++DV+ YG+ +      WE M   A
Sbjct: 173 TPIKWMALESILFGRYTHQSDVWSYGVTV------WEMMSYGA 209

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 15/115 (13%)

Query: 105 FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL 164
           + +A+RN      + I   V + I YLH   E  I+H DIK +NI ++      + DFG 
Sbjct: 172 YLAAKRNIAICDILAIERSVLRAIQYLH---ENRIIHRDIKAENIFINHPGDVCLGDFGA 228

Query: 165 AKLLSD---------KGCMA---PECYKRTPISVKADVYGYGIVLLETICCWENM 207
           A    D          G +A   PE   R P     D++  GIVL E   C +++
Sbjct: 229 ACFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSL 283

Length = 391

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 16/89 (17%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSDKGCMA 175
           + +G+ Y+H      ++H D+KP NIL++E    KI DFGLA++        +S +   A
Sbjct: 117 ILRGLKYVH---SAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRA 173

Query: 176 PE---CYKRTPISVKADVYGYGIVLLETI 201
           PE    +++    V+ D++  G +  E +
Sbjct: 174 PEIMLTWQK--YDVEVDIWSAGCIFAEML 200

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 33/184 (17%)

Query: 108 AERNP----YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG 163
           AE N       +Q + IA  +A G++YL  +     +H D+  +N L+ E    KI DFG
Sbjct: 109 AEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGDFG 165

Query: 164 LAKLLSDKG-------------CMAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
           +++ +                  M PE       + ++DV+  G+VL      WE     
Sbjct: 166 MSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVL------WEIFTY- 218

Query: 211 ASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCV 270
             +P   +  N V +C     + +  R         + +  + L C Q EP +R ++K +
Sbjct: 219 GKQPWYQLSNNEVIECITQGRVLQRPRTCP------KEVYDLMLGCWQREPHMRLNIKEI 272

Query: 271 VMML 274
             +L
Sbjct: 273 HSLL 276

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 14/92 (15%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG------C- 173
           A ++A  + YLH      I++ D+KP+NIL+D      ++DFGL K   +        C 
Sbjct: 102 AAEIASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCG 158

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETI 201
               +APE  ++ P     D +  G VL E +
Sbjct: 159 TPEYLAPEVLRKQPYDRTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 17/93 (18%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD--------- 170
           +  DV +G+ YL        +H D+  +N L+      K+SDFG+ + + D         
Sbjct: 105 MCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGA 161

Query: 171 ----KGCMAPECYKRTPISVKADVYGYGIVLLE 199
               K    PE +  +  S K+DV+ +G+++ E
Sbjct: 162 KFPVKWS-PPEVFNFSKYSSKSDVWSFGVLMWE 193

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 13/88 (14%)

Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM------- 174
             + +G+ +LH      ++H D+KPQNIL+      K++DFGLA++ S +  +       
Sbjct: 117 FQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTL 173

Query: 175 ---APECYKRTPISVKADVYGYGIVLLE 199
              APE   ++  +   D++  G +  E
Sbjct: 174 WYRAPEVLLQSSYATPVDLWSVGCIFAE 201

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 20/93 (21%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---------- 173
           +  G+ YLH+ C   ++H DIK  N+++      K+ DFG A+ L+  G           
Sbjct: 111 ILDGVAYLHNNC---VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKS 167

Query: 174 -------MAPECYKRTPISVKADVYGYGIVLLE 199
                  MAPE    +    K+D++  G  + E
Sbjct: 168 MHGTPYWMAPEVINESGYGRKSDIWSIGCTVFE 200

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 14/90 (15%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK--LLSDKG----C- 173
           A ++A G+ +LH +    I++ D+K  N+++D     KI+DFG+ K  +   K     C 
Sbjct: 107 AAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCG 163

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLE 199
               +APE     P     D + +G++L E
Sbjct: 164 TPDYIAPEIIAYQPYGKSVDWWAFGVLLYE 193

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 18/90 (20%)

Query: 124 VAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------KG---- 172
           VAKG+ +L  + C    +H D+  +NIL+      KI DFGLA+ + +      KG    
Sbjct: 223 VAKGMSFLASKNC----IHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARL 278

Query: 173 ---CMAPECYKRTPISVKADVYGYGIVLLE 199
               MAPE       + ++DV+ YGI+L E
Sbjct: 279 PVKWMAPESIFNCVYTFESDVWSYGILLWE 308

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 118 VRIAL-DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           V+I L  + +G+ Y H      +LH D+KPQN+L++E    K++DFGLA+  S
Sbjct: 106 VKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKS 155

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG 172
           +G+ Y+H      +LH D+KP N+L++     KI DFGLA+  S+KG
Sbjct: 119 RGLKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKG 162

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 3/44 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           +G+ Y H      +LH D+KPQN+L++E    K++DFGLA+  S
Sbjct: 115 RGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKS 155

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 23/110 (20%)

Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKG- 172
           + +AKG+ YL    E  ++H D+  +N+L+      KI+DFGLA+LL        +D G 
Sbjct: 116 VQIAKGMSYLE---EVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGK 172

Query: 173 ----CMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                MA E       + ++DV+ YG+ +      WE M   A KP + I
Sbjct: 173 VPIKWMALESILHRRFTHQSDVWSYGVTV------WELMTFGA-KPYDGI 215

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           +G+ Y+H +    ILH D+KPQN+L+      K++DFGLA+
Sbjct: 114 RGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           +G+ + H      +LH D+KPQN+L++     K++DFGLA+
Sbjct: 111 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 23/106 (21%)

Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKG- 172
           + +AKG+ YL +     ++H D+  +N+L+      KI+DFGLAKLL        ++ G 
Sbjct: 116 VQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGK 172

Query: 173 ----CMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKP 214
                MA E       + ++DV+ YG+ +      WE M    SKP
Sbjct: 173 VPIKWMALESILHRIYTHQSDVWSYGVTV------WELMTF-GSKP 211

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           + +G+ ++H        H D+KP+N+L+      KI+DFGLA+
Sbjct: 108 ILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAR 147

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 14/92 (15%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK------LLSDKGC- 173
           A ++A G+ +LH +    I++ D+K  N+++D     KI+DFG+ K      + +   C 
Sbjct: 107 AAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCG 163

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETI 201
               +APE     P     D + +G++L E +
Sbjct: 164 TPDYIAPEIIAYQPYGKSVDWWAFGVLLYEML 195

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-----LLSDKGC----- 173
           + +G+ YLH      I+H DIK  NIL D     K+ DFG +K      LS  G      
Sbjct: 115 ILEGVSYLHSNM---IVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTG 171

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETI 201
               M+PE         KAD++  G  ++E +
Sbjct: 172 TPYWMSPEVISGEGYGRKADIWSVGCTVVEML 203

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 19/92 (20%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL-AKLLSDKG---------- 172
             +G+ YLH+     ++H DIK QNIL+ +    K+ DFG+ A+L S  G          
Sbjct: 122 TLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPY 178

Query: 173 CMAPE---C-YKRTP-ISVKADVYGYGIVLLE 199
            MAPE   C  +       ++DV+  GI  +E
Sbjct: 179 WMAPEVIACDEQPDASYDARSDVWSLGITAIE 210

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 12/94 (12%)

Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAK--------LLSDKGCMAPECYKRTPISVKADV 190
            +H D+KP+N L+D     K++DFGL+K        ++     MAPE  +        D 
Sbjct: 122 YIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDY 181

Query: 191 YGYGIVLLETICCWENMEIDASKPEEII--LTNW 222
           +  G +L E +C +       S P E    L  W
Sbjct: 182 WSLGCMLYEFLCGFP--PFSGSTPNETWENLKYW 213

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 4/42 (9%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTA-KISDFGLAK 166
           +GI Y H      +LH D+KPQN+L+D    A K++DFGLA+
Sbjct: 113 RGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLAR 151

Length = 294

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 14/92 (15%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK---LLSDKGC---- 173
           A ++A  + YLH      I++ D+KP+NIL+D      ++DFGL K     SD       
Sbjct: 102 AAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCG 158

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETI 201
               +APE  ++ P     D +  G VL E +
Sbjct: 159 TPEYLAPEVIRKQPYDNTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 13/84 (15%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-------MAPE- 177
           +G+ YLH      ++H DIK  NIL+ E    K++DFG A   S           MAPE 
Sbjct: 132 QGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPEV 188

Query: 178 --CYKRTPISVKADVYGYGIVLLE 199
                      K DV+  GI  +E
Sbjct: 189 ILAMDEGQYDGKVDVWSLGITCIE 212

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 14/93 (15%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------- 173
           A ++   +++LHD+    I++ D+K  N+L+D     K++DFG+ K     G        
Sbjct: 102 AAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCG 158

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETIC 202
               +APE  +        D +  G++L E +C
Sbjct: 159 TPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLC 191

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

 Score = 40.0 bits (93), Expect = 9e-04
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 34/159 (21%)

Query: 124 VAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----KGC--- 173
           VA+G+ +L  + C    +H D+  +N+L+ +    KI DFGLA+ ++ D     KG    
Sbjct: 246 VARGMEFLASKNC----VHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFL 301

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN 229
               MAPE       +  +DV+ YGI+L      WE   +  +    +I+ +  Y     
Sbjct: 302 PVKWMAPESIFDNLYTTLSDVWSYGILL------WEIFSLGGTPYPGMIVDSTFY----- 350

Query: 230 RELNKLVRGTEVDKKN--LENLVKVGLWCVQDEPALRPS 266
              NK+  G  + K +   + +  + + C   EP  RPS
Sbjct: 351 ---NKIKSGYRMAKPDHATQEVYDIMVKCWNSEPEKRPS 386

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 35/167 (20%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG----- 172
           + IA+ +A G+ YL        +H D+  +NIL+ E    KISD GL++ +         
Sbjct: 127 LHIAIQIAAGMEYLSSHF---FVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQ 183

Query: 173 --------CMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
                    M PE       S  +D++ +G+VL      WE       +P         Y
Sbjct: 184 PKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVL------WEIFSF-GLQP---------Y 227

Query: 225 KCFINRELNKLVRGTEV---DKKNLENLVKVGLWCVQDEPALRPSMK 268
             F N+E+ ++VR  ++    +     +  +   C Q+ P+ RP  K
Sbjct: 228 YGFSNQEVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFK 274

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           +G+ Y+H      ILH D+KPQN+L+ +    K++DFGLA+
Sbjct: 114 RGLSYIHQRY---ILHRDLKPQNLLISDTGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 16/82 (19%)

Query: 131 LHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM-------------APE 177
           +H      ++H D+K  NI +      K+ DFG +K  SD   +             APE
Sbjct: 185 VHSRK---MMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPE 241

Query: 178 CYKRTPISVKADVYGYGIVLLE 199
            ++R   S KAD++  G++L E
Sbjct: 242 LWERKRYSKKADMWSLGVILYE 263

Length = 478

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 22/77 (28%)

Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------APEC------YKRT 182
           I H DIKP+NIL+      K++DFG  + +  K             APEC      Y   
Sbjct: 121 IFHRDIKPENILIK-DDILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYY--- 176

Query: 183 PISVKADVYGYGIVLLE 199
               K D++  G V  E
Sbjct: 177 --GPKMDIWAVGCVFFE 191

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           G+ +LHD     ILH D+K  N+L++     KI DFGLA+
Sbjct: 118 GVAHLHDNW---ILHRDLKTSNLLLNNRGILKICDFGLAR 154

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 19/86 (22%)

Query: 130 YLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA----KLLSDKGC-------MAPEC 178
           YLH      I+H D+K  N+L+      K++DFG++    K L  +         MAPE 
Sbjct: 125 YLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEV 181

Query: 179 -----YKRTPISVKADVYGYGIVLLE 199
                 K TP   KAD++  GI L+E
Sbjct: 182 VMCETMKDTPYDYKADIWSLGITLIE 207

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 24/106 (22%)

Query: 121 ALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----KG- 172
           +  VAKG+ +L   +C    +H D+  +NIL+ E    KI DFGLA+ +  D     KG 
Sbjct: 185 SFQVAKGMEFLASRKC----IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGD 240

Query: 173 ------CMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDAS 212
                  MAPE       ++++DV+ +G++L      WE   + AS
Sbjct: 241 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLL------WEIFSLGAS 280

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPEC---YKRTP 183
           GI +LH      I+H D+KP NI++    T KI DFGLA+       M P     Y R P
Sbjct: 135 GIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAP 191

Query: 184 ISV-------KADVYGYGIVLLETI 201
             +         D++  G ++ E +
Sbjct: 192 EVILGMGYKENVDIWSVGCIMGELV 216

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK--GCMAPECYKR 181
           + +G+ Y+H      I+H D+KP N+ ++E    KI DFGLA+   D+  G +A   Y+ 
Sbjct: 129 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 185

Query: 182 TPI-------SVKADVYGYGIVLLETI 201
             I       +   D++  G ++ E +
Sbjct: 186 PEIMLNWMHYNQTVDIWSVGCIMAELL 212

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-----SDKGC----- 173
           + +G+ YLH      I+H DIK  NIL D     K+ DFG +K L     S  G      
Sbjct: 115 ILEGMSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTG 171

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETI 201
               M+PE         KADV+  G  ++E +
Sbjct: 172 TPYWMSPEVISGEGYGRKADVWSLGCTVVEML 203

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---------- 173
           +   + ++H      I+H DIKP N+ +      K+ D GL +  S K            
Sbjct: 115 LCSALEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPY 171

Query: 174 -MAPECYKRTPISVKADVYGYGIVLLETIC 202
            M+PE       + K+D++  G +L E   
Sbjct: 172 YMSPERIHENGYNFKSDIWSLGCLLYEMAA 201

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 13/80 (16%)

Query: 99  DLAYIIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWT 156
           DLA ++    E+ P   +  R+    + +G+ Y+H      +LH D+KP N+ ++ E   
Sbjct: 101 DLANVL----EQGPLSEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANVFINTEDLV 153

Query: 157 AKISDFGLAKLL----SDKG 172
            KI DFGLA+++    S KG
Sbjct: 154 LKIGDFGLARIVDPHYSHKG 173

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 16/98 (16%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
            Q + I   + + + YLH      I+H D+K +NI +DE   A + DFG A  L      
Sbjct: 185 EQAITIQRRLLEALAYLH---GRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDT 241

Query: 171 ------KGCM---APECYKRTPISVKADVYGYGIVLLE 199
                  G +   +PE     P   K D++  G+VL E
Sbjct: 242 PQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFE 279

Length = 392

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK 171
           +G+ Y+H      I+H D+KP NI ++E    KI DFGLA+   D+
Sbjct: 129 RGLKYIH---SAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDE 171

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 14/92 (15%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-----------LLS 169
           A ++A  + YLH      I++ D+KP+NIL+D      ++DFGL K              
Sbjct: 102 AAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCG 158

Query: 170 DKGCMAPECYKRTPISVKADVYGYGIVLLETI 201
               +APE   + P     D +  G VL E +
Sbjct: 159 TPEYLAPEVLHKQPYDRTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 15/84 (17%)

Query: 130 YLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-----------MAPEC 178
           Y+H   +  ++H DIK  NIL+      K+ DFG+A LL+               MAPE 
Sbjct: 116 YIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEV 172

Query: 179 YKR-TPISVKADVYGYGIVLLETI 201
                    KAD++  GI + E  
Sbjct: 173 ITEGKYYDTKADIWSLGITIYEMA 196

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 18/96 (18%)

Query: 118 VRIALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD----- 170
           V  +  VA G+ +L  + C    +H D+  +N+L+ E    KI DFGLA+ ++ D     
Sbjct: 242 VGFSYQVANGMEFLASKNC----VHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYIS 297

Query: 171 KGC-------MAPECYKRTPISVKADVYGYGIVLLE 199
           KG        MAPE       +  +DV+ +GI+L E
Sbjct: 298 KGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWE 333

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 140 LHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG 172
           +H DIKP NIL+D     K++DFGL K ++   
Sbjct: 123 IHRDIKPDNILIDADGHIKLADFGLCKKMNKAK 155

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           G+ Y+H      +LH D+KP N+L++     KI DFGLA+
Sbjct: 117 GLKYIH---SANVLHRDLKPGNLLVNADCELKICDFGLAR 153

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 11/72 (15%)

Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-----------MAPECYKRTPISVK 187
           ++H DIKP N+ +      K+ D GL +  S K             M+PE       + K
Sbjct: 127 VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFK 186

Query: 188 ADVYGYGIVLLE 199
           +D++  G +L E
Sbjct: 187 SDIWSLGCLLYE 198

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 16/95 (16%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------- 170
           V  A  VA+G+ YL  +     +H D+  +N+L+ E    KI+DFGLA+ + +       
Sbjct: 137 VSCAYQVARGMEYLASQ---KCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKT 193

Query: 171 ------KGCMAPECYKRTPISVKADVYGYGIVLLE 199
                    MAPE       + ++DV+ +G++L E
Sbjct: 194 TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWE 228

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 11/74 (14%)

Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-----------MAPECYKRTPISVK 187
           ++H DIK  NIL+    + K++DFG    ++ +             MAPE   R     K
Sbjct: 136 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPK 195

Query: 188 ADVYGYGIVLLETI 201
            D++  GI+ +E +
Sbjct: 196 VDIWSLGIMAIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 24/112 (21%)

Query: 109 ERNPYWNQRVRI---ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA 165
           + N Y      +   +  ++  + YL  +     +H DI  +N+L+      K+ DFGL+
Sbjct: 98  QVNKYSLDLASLILYSYQLSTALAYLESK---RFVHRDIAARNVLVSSPDCVKLGDFGLS 154

Query: 166 KLLSDKGC------------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
           + L D+              MAPE       +  +DV+ +G      +C WE
Sbjct: 155 RYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFG------VCMWE 200

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 37.8 bits (87), Expect = 0.004
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 13/84 (15%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-------MAPE- 177
           +G+ YLH      ++H DIK  NIL+ E    K++DFG A + S           MAPE 
Sbjct: 136 QGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEV 192

Query: 178 --CYKRTPISVKADVYGYGIVLLE 199
                      K DV+  GI  +E
Sbjct: 193 ILAMDEGQYDGKVDVWSLGITCIE 216

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 37.8 bits (87), Expect = 0.004
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 11/74 (14%)

Query: 139 ILHCDIKPQNILMDEFWTAKISDFGL-----------AKLLSDKGCMAPECYKRTPISVK 187
           ++H DIK  NIL+    + K++DFG            + ++     MAPE   R     K
Sbjct: 137 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPK 196

Query: 188 ADVYGYGIVLLETI 201
            D++  GI+ +E I
Sbjct: 197 VDIWSLGIMAIEMI 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	99.98
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.98
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.98
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.98
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.97
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.97
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.97
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.97
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.97
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.97
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.97
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.97
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.97
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.97
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.97
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.96
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.96
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.96
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.96
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.95
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.95
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.95
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.95
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.95
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.94
KOG1152	772	consensus Signal transduction serine/threonine kin	99.94
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.93
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.93
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.92
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.91
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.9
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.89
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.84
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.83
PRK09188	365	serine/threonine protein kinase; Provisional	99.82
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.81
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.79
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.78
PRK10345	210	hypothetical protein; Provisional	99.75
PRK12274	218	serine/threonine protein kinase; Provisional	99.75
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.73
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.72
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.67
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.67
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.67
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.66
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.65
PRK14879	211	serine/threonine protein kinase; Provisional	99.63
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.61
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.6
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.6
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.6
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.54
smart00090	237	RIO RIO-like kinase.	99.53
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.48
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.46
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.44
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.41
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.35
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.27
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.17
KOG1243	690	consensus Protein kinase [General function predict	99.11
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.01
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.95
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.89
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.86
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.85
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.83
KOG3087	229	consensus Serine/threonine protein kinase [General	98.8
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.73
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.69
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.67
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.62
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.54
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.48
COG4248	637	Uncharacterized protein with protein kinase and he	98.38
PRK09902	216	hypothetical protein; Provisional	98.31
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.21
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.89
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.86
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.85
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	97.78
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.62
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.56
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.3
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.02
PLN02876	822	acyl-CoA dehydrogenase	96.95
KOG1235	538	consensus Predicted unusual protein kinase [Genera	96.92
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	96.86
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.84
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	96.64
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	96.18
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	96.18
PF01636	239	APH: Phosphotransferase enzyme family This family	95.47
PRK10593	297	hypothetical protein; Provisional	94.47
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	94.16
KOG2268	465	consensus Serine/threonine protein kinase [Signal	94.02
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	93.6
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	93.49
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	90.47
PRK05231	319	homoserine kinase; Provisional	89.57
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	89.49
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	89.46
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	88.81
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	88.33
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	87.45
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	86.25
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	85.93
COG2334	331	Putative homoserine kinase type II (protein kinase	85.6
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	84.28
PTZ00384	383	choline kinase; Provisional	83.77
KOG2270	520	consensus Serine/threonine protein kinase involved	83.48
PRK10271	188	thiK thiamine kinase; Provisional	82.95
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	81.34
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	80.91

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-55  Score=382.14  Aligned_cols=263  Identities=29%  Similarity=0.446  Sum_probs=228.5

Q ss_pred             chhhhhhhHHHHhhhccccccCCCCCCCCcchhHH-----HHHHHHHhcCCCC--CCcHHHHHHHHhcCCCCccceEeEE
Q 048314            9 SAWIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSC-----MRALMATVNSPYS--PSRPLTLTSIVSRVSWTTDIEVSSV   81 (274)
Q Consensus         9 ~~~~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~-----~~~~~~~~~~~~~--~~~~~~e~~~l~~l~h~niv~l~~~   81 (274)
                      ...|++.+|..+|++|+.++++|+|+|  |.||+|     ...++|.......  ..+|.+|+.++++++|||+|+|+||
T Consensus        62 ~~~fs~~el~~AT~~Fs~~~~ig~Ggf--g~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGy  139 (361)
T KOG1187|consen   62 LRSFSYDELRKATNNFSESNLIGEGGF--GTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGY  139 (361)
T ss_pred             cceeeHHHHHHHHhCCchhcceecCCC--eEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEE
Confidence            455999999999999999999999999  999999     1222333333222  4569999999999999999999999


Q ss_pred             EEeCC-cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 048314           82 AMRGS-KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKIS  160 (274)
Q Consensus        82 ~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~  160 (274)
                      |.+.+ +++||||||++|||.++|+......++|..+.+|+.++|.||+|||..+.++|+|||||++|||++.++.+|++
T Consensus       140 C~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKls  219 (361)
T KOG1187|consen  140 CLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLS  219 (361)
T ss_pred             EecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEcc
Confidence            99998 59999999999999999997433389999999999999999999999988899999999999999999999999


Q ss_pred             ccccceec------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh
Q 048314          161 DFGLAKLL------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI  228 (274)
Q Consensus       161 d~g~~~~~------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~  228 (274)
                      |||+++..            ++.+|+|||+...+..+.++||||||++++|+++|+.+.+... +.....+..|.+....
T Consensus       220 DFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~-~~~~~~l~~w~~~~~~  298 (361)
T KOG1187|consen  220 DFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSR-PRGELSLVEWAKPLLE  298 (361)
T ss_pred             CccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCC-CcccccHHHHHHHHHH
Confidence            99998644            4567999999999999999999999999999999999887543 3344458889888888


Q ss_pred             hhhhhhhhcCC----ccCH-HHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          229 NRELNKLVRGT----EVDK-KNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       229 ~~~~~~~~~~~----~~~~-~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ++.+.+++|+.    ..+. .....+..+..+|++.+|.+||+|.||+++|
T Consensus       299 ~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L  349 (361)
T KOG1187|consen  299 EGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKEL  349 (361)
T ss_pred             CcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHH
Confidence            88999999987    2332 5778899999999999999999999998875

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-48  Score=336.58  Aligned_cols=225  Identities=22%  Similarity=0.289  Sum_probs=192.2

Q ss_pred             ccCCCCCCCCcchhHH-----HHHHHHHhcC-CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHH
Q 048314           28 SLNDRNSPRSKSVWSC-----MRALMATVNS-PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLA  101 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~-----~~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~  101 (274)
                      +-||.|.|  |.|+.|     ..+.+|.++. ..+.+.|.+|+++|++|+|+|||+++|+|..+...+||||||++|||.
T Consensus       212 ~~LG~G~F--G~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl  289 (468)
T KOG0197|consen  212 RELGSGQF--GEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLL  289 (468)
T ss_pred             HHhcCCcc--ceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHH
Confidence            33999999  999999     3444444444 456788999999999999999999999999988899999999999999


Q ss_pred             HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------------
Q 048314          102 YIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------------  169 (274)
Q Consensus       102 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------------  169 (274)
                      +||.......++-...+.++.|||+|++||.++   ++|||||..+|||++.+..+||+|||+++...            
T Consensus       290 ~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~---~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kf  366 (468)
T KOG0197|consen  290 DYLRTREGGLLNLPQLLDFAAQIAEGMAYLESK---NYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKF  366 (468)
T ss_pred             HHhhhcCCCccchHHHHHHHHHHHHHHHHHHhC---CccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCC
Confidence            999976667799999999999999999999999   99999999999999999999999999999654            


Q ss_pred             CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc-CC--ccCHHH
Q 048314          170 DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVR-GT--EVDKKN  245 (274)
Q Consensus       170 ~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~  245 (274)
                      ...|+|||.+..+.++.++|||||||+||||+| |+.||..-                 .+...-+.++ +.  +.|..|
T Consensus       367 PIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~m-----------------sn~ev~~~le~GyRlp~P~~C  429 (468)
T KOG0197|consen  367 PIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGM-----------------SNEEVLELLERGYRLPRPEGC  429 (468)
T ss_pred             CceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCC-----------------CHHHHHHHHhccCcCCCCCCC
Confidence            235999999999999999999999999999987 67776432                 1111111122 22  578899


Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          246 LENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       246 ~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ++++.++|..||+.+|++|||++.+...|
T Consensus       430 P~~vY~lM~~CW~~~P~~RPtF~~L~~~l  458 (468)
T KOG0197|consen  430 PDEVYELMKSCWHEDPEDRPTFETLREVL  458 (468)
T ss_pred             CHHHHHHHHHHhhCCcccCCCHHHHHHHH
Confidence            99999999999999999999999887643

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-47  Score=333.85  Aligned_cols=230  Identities=27%  Similarity=0.345  Sum_probs=189.2

Q ss_pred             cccCCCCCCCCcchhHH----HH-HHHHHhcCC-CC---CCcHHHHHHHHhcCCCCccceEeEEEEeCC-cceEEEEeCC
Q 048314           27 SSLNDRNSPRSKSVWSC----MR-ALMATVNSP-YS---PSRPLTLTSIVSRVSWTTDIEVSSVAMRGS-KPSTEAALDL   96 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~----~~-~~~~~~~~~-~~---~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~e~~~   96 (274)
                      ...+|.|+|  |.||+|    .. +++|.+... .+   .+.|.+|+.+|++++|||||+++|+|.+.. ..++||||++
T Consensus        46 ~~~iG~G~~--g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~  123 (362)
T KOG0192|consen   46 EEVLGSGSF--GTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMP  123 (362)
T ss_pred             hhhcccCCc--eeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCC
Confidence            455999999  999998    22 333333322 11   447999999999999999999999999987 7999999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC-cccCCCCCCceEEcCCC-cEEEeccccceecC-----
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP-ILHCDIKPQNILMDEFW-TAKISDFGLAKLLS-----  169 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~-i~h~dl~~~nil~~~~~-~~kl~d~g~~~~~~-----  169 (274)
                      +|+|.+++.......+++..++.++.||+.|+.|||++   + |||||||++|+|++.++ ++||+|||+++...     
T Consensus       124 ~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~---~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~  200 (362)
T KOG0192|consen  124 GGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSE---GPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTS  200 (362)
T ss_pred             CCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCeeecccChhhEEEcCCCCEEEECCCccceeecccccc
Confidence            99999999875467899999999999999999999999   7 99999999999999997 99999999996432     


Q ss_pred             ------CCCcCCCcccc--cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 ------DKGCMAPECYK--RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 ------~~~~~ape~~~--~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                            |+.|||||++.  ...|+.|+||||||+++|||++|+.||.....  ..  ...   ..     ...-.+ ..+
T Consensus       201 ~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~--~~--~~~---~v-----~~~~~R-p~~  267 (362)
T KOG0192|consen  201 MTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP--VQ--VAS---AV-----VVGGLR-PPI  267 (362)
T ss_pred             ccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH--HH--HHH---HH-----HhcCCC-CCC
Confidence                  66799999999  56899999999999999999999999975411  00  000   10     001111 135


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      |..++..+..+|.+||+.||+.||++.+++.+|
T Consensus       268 p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l  300 (362)
T KOG0192|consen  268 PKECPPHLSSLMERCWLVDPSRRPSFLEIVSRL  300 (362)
T ss_pred             CccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHH
Confidence            566889999999999999999999999998765

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-47  Score=317.17  Aligned_cols=232  Identities=21%  Similarity=0.225  Sum_probs=190.9

Q ss_pred             hccccccCCCCCCCCcchhHH------HHHHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC-cceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC------MRALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS-KPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~   92 (274)
                      +....+.+|.|.-  |.|||+      ...+.|.+.   .....++..+|++++++.+||+||++||.|..++ ...++|
T Consensus        80 dle~~~~lG~G~g--G~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~m  157 (364)
T KOG0581|consen   80 DLERLGVLGSGNG--GTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICM  157 (364)
T ss_pred             HhhhhhhcccCCC--cEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeeh
Confidence            4455678999999  999999      222222221   1133455679999999999999999999999988 499999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEecccccee----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL----  167 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~----  167 (274)
                      |||++|||++++..  -+.+++...-+++.++++||.|||. +   +|+||||||+|+|+...+.+||+|||.+..    
T Consensus       158 EYMDgGSLd~~~k~--~g~i~E~~L~~ia~~VL~GL~YLh~~~---~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS  232 (364)
T KOG0581|consen  158 EYMDGGSLDDILKR--VGRIPEPVLGKIARAVLRGLSYLHEER---KIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS  232 (364)
T ss_pred             hhcCCCCHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHhhcc---CeeeccCCHHHeeeccCCCEEeccccccHHhhhh
Confidence            99999999999986  3679999999999999999999996 6   999999999999999999999999999864    


Q ss_pred             -----cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCC-hhhHHHHHHHHHHHhhhhhhhhhcC--C
Q 048314          168 -----LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASK-PEEIILTNWVYKCFINRELNKLVRG--T  239 (274)
Q Consensus       168 -----~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~  239 (274)
                           .+|..|||||.+.+..|+.++||||||+.++|+++|+.||...... .....+            +..++++  .
T Consensus       233 ~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~L------------l~~Iv~~ppP  300 (364)
T KOG0581|consen  233 IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFEL------------LCAIVDEPPP  300 (364)
T ss_pred             hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHH------------HHHHhcCCCC
Confidence                 4478899999999999999999999999999999999999754111 111111            1122221  1


Q ss_pred             ccCHH-HHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          240 EVDKK-NLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       240 ~~~~~-~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ..|.. +++++.+++..||++||.+|||+.|+++.
T Consensus       301 ~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  301 RLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             CCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            34554 88999999999999999999999999863

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.6e-46  Score=332.16  Aligned_cols=228  Identities=17%  Similarity=0.234  Sum_probs=197.7

Q ss_pred             hhccccccCCCCCCCCcchhHH----------HHHH-HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC----------MRAL-MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~----------~~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ..|...+++|+|+|  .++|++          .+++ ++.+.+....+...+||++.++|+|||||+++++|++.+..||
T Consensus        18 ~~Y~~g~~LGkGgF--A~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYi   95 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGF--ARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYI   95 (592)
T ss_pred             ceeeeeeeeccCcc--eEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEE
Confidence            45888999999999  999988          2222 5555566778888999999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      |+|+|.+++|..++++  .+.+++++++.+..||+.||.|||+.   +|+|||||..|++++.+.++||+|||+|.... 
T Consensus        96 vLELC~~~sL~el~Kr--rk~ltEpEary~l~QIv~GlkYLH~~---~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~  170 (592)
T KOG0575|consen   96 VLELCHRGSLMELLKR--RKPLTEPEARYFLRQIVEGLKYLHSL---GIIHRDLKLGNLFLNENMNVKIGDFGLATQLEY  170 (592)
T ss_pred             EEEecCCccHHHHHHh--cCCCCcHHHHHHHHHHHHHHHHHHhc---CceecccchhheeecCcCcEEecccceeeeecC
Confidence            9999999999999984  56899999999999999999999999   99999999999999999999999999997654 


Q ss_pred             ----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 ----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 ----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                                ||.|.|||++....++..+||||+||++|.|+.|++||+....                +..+..+....
T Consensus       171 ~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~v----------------kety~~Ik~~~  234 (592)
T KOG0575|consen  171 DGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTV----------------KETYNKIKLNE  234 (592)
T ss_pred             cccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchH----------------HHHHHHHHhcC
Confidence                      8899999999998999999999999999999999999975411                11111111111


Q ss_pred             -ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 -EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 -~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       ..|...+.+..+||..+|+.||.+|||+.+|+.
T Consensus       235 Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~  268 (592)
T KOG0575|consen  235 YSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLD  268 (592)
T ss_pred             cccccccCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence             356677788999999999999999999999985

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.9e-44  Score=305.71  Aligned_cols=232  Identities=19%  Similarity=0.225  Sum_probs=184.4

Q ss_pred             ccccccCCCCCCCCcchhHH------HHHHHHHhcCC----C-----CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           24 FCRSSLNDRNSPRSKSVWSC------MRALMATVNSP----Y-----SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~~----~-----~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      |-.++.+|.|.|  |.|-++      ...++|++...    .     ......+|+++|++|+|||||++++++...+..
T Consensus       174 yii~~~LGsGaf--g~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~  251 (475)
T KOG0615|consen  174 YIISKTLGSGAF--GLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSS  251 (475)
T ss_pred             eEeeeeecCCce--eEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCce
Confidence            334888999999  888777      11112222111    1     112235999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC---CcEEEeccccc
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF---WTAKISDFGLA  165 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~---~~~kl~d~g~~  165 (274)
                      ||||||+.||.|-+++-.  ++.+.+..-+.++.|++.|+.|||+.   ||+||||||+|||+..+   ..+||+|||++
T Consensus       252 YmVlE~v~GGeLfd~vv~--nk~l~ed~~K~~f~Qll~avkYLH~~---GI~HRDiKPeNILl~~~~e~~llKItDFGlA  326 (475)
T KOG0615|consen  252 YMVLEYVEGGELFDKVVA--NKYLREDLGKLLFKQLLTAVKYLHSQ---GIIHRDIKPENILLSNDAEDCLLKITDFGLA  326 (475)
T ss_pred             EEEEEEecCccHHHHHHh--ccccccchhHHHHHHHHHHHHHHHHc---CcccccCCcceEEeccCCcceEEEecccchh
Confidence            999999999999999986  56688888899999999999999999   99999999999999876   78999999999


Q ss_pred             eecC----------CCCcCCCcccccCC---CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          166 KLLS----------DKGCMAPECYKRTP---ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       166 ~~~~----------~~~~~ape~~~~~~---~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      +..+          |+.|.|||++....   +..++|+||+||+||-+++|.+||.....+..   +..    .+..+  
T Consensus       327 K~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~s---l~e----QI~~G--  397 (475)
T KOG0615|consen  327 KVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPS---LKE----QILKG--  397 (475)
T ss_pred             hccccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCcc---HHH----HHhcC--
Confidence            8764          78999999998754   34588999999999999999999975533321   111    11111  


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       .+....+.....+++..+||.+||..||++|||++|+++
T Consensus       398 -~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  398 -RYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             -cccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence             111222355677889999999999999999999999986

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-44  Score=307.13  Aligned_cols=230  Identities=20%  Similarity=0.184  Sum_probs=180.6

Q ss_pred             hhhccccccCCCCCCCCcchhHH-------HHHHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC-------MRALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      .++|..++-||.|.|  +.||+|       .+++|.+..+   +...+....|+++|+.++|||||++++++++++..+|
T Consensus         9 ~~~y~~~~~iG~Gsf--avVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~l   86 (429)
T KOG0595|consen    9 VGDYELSREIGSGSF--AVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYL   86 (429)
T ss_pred             cccceehhhccCcce--EEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEE
Confidence            457777778999999  999999       2223222222   2345556799999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC------CcEEEecccc
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF------WTAKISDFGL  164 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~------~~~kl~d~g~  164 (274)
                      |||||.||+|.+|++.  .+.+++.+.+.++.|++.||++||++   +|+||||||.|||++..      -.+||+|||+
T Consensus        87 VMEyC~gGDLs~yi~~--~~~l~e~t~r~Fm~QLA~alq~L~~~---~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGf  161 (429)
T KOG0595|consen   87 VMEYCNGGDLSDYIRR--RGRLPEATARHFMQQLASALQFLHEN---NIIHRDLKPQNILLSTTARNDTSPVLKIADFGF  161 (429)
T ss_pred             EEEeCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCcceEEeccCCCCCCCceEEecccch
Confidence            9999999999999986  56899999999999999999999999   99999999999999765      5689999999


Q ss_pred             ceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          165 AKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       165 ~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      ++...          ++.|||||++....|+.|+|+||.|+++|++++|+.||+...  ..  .+..   ..-.....  
T Consensus       162 AR~L~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t--~~--eL~~---~~~k~~~~--  232 (429)
T KOG0595|consen  162 ARFLQPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAET--PK--ELLL---YIKKGNEI--  232 (429)
T ss_pred             hhhCCchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccC--HH--HHHH---HHhccccc--
Confidence            98765          678999999999999999999999999999999999997441  11  1111   10001000  


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhh
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKC  269 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~e  269 (274)
                       +.  ..+......+.+++...+..||.+|.+..+
T Consensus       233 -~~--~~~~~~s~~~~~Ll~~ll~~~~~~~~~~~~  264 (429)
T KOG0595|consen  233 -VP--VLPAELSNPLRELLISLLQRNPKDRISFED  264 (429)
T ss_pred             -cC--chhhhccCchhhhhhHHHhcCccccCchHH
Confidence             00  123333444556777777777777766554

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-44  Score=328.73  Aligned_cols=230  Identities=21%  Similarity=0.232  Sum_probs=191.9

Q ss_pred             ccccCCCCCCCCcchhHH------------HHHHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           26 RSSLNDRNSPRSKSVWSC------------MRALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        26 ~~~~~g~g~~~~g~vy~~------------~~~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ...-+|+|.|  |+||+|            ++++|+.....  +...+|.+|++.|..++|||||+|+|+|.+++..+||
T Consensus       490 ~~~eLGegaF--GkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~Mv  567 (774)
T KOG1026|consen  490 FKEELGEGAF--GKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMV  567 (774)
T ss_pred             ehhhhcCchh--hhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEE
Confidence            3456999999  999999            44444433332  3467899999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCC------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 048314           92 AALDLPWDLAYIIFCSA------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI  159 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl  159 (274)
                      +|||.+|+|.+||..+.            ...|+..+.+.++.|||.|+.||-++   .++||||-.+|||+.++..+||
T Consensus       568 FEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~---~FVHRDLATRNCLVge~l~VKI  644 (774)
T KOG1026|consen  568 FEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH---HFVHRDLATRNCLVGENLVVKI  644 (774)
T ss_pred             EEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---cccccchhhhhceeccceEEEe
Confidence            99999999999998541            12288999999999999999999999   9999999999999999999999


Q ss_pred             eccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHH
Q 048314          160 SDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYK  225 (274)
Q Consensus       160 ~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~  225 (274)
                      +|||+++..-             -.+||+||.+..++++.++|||||||+|||+++ |+.||... +..+.+       .
T Consensus       645 sDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~gl-Sn~EVI-------e  716 (774)
T KOG1026|consen  645 SDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGL-SNQEVI-------E  716 (774)
T ss_pred             cccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCccccc-chHHHH-------H
Confidence            9999997543             246999999999999999999999999999986 88888644 111111       1


Q ss_pred             HHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          226 CFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+.++...      +.|..++.++.+||..||+.+|++|||++||-.+|
T Consensus       717 ~i~~g~lL------~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L  759 (774)
T KOG1026|consen  717 CIRAGQLL------SCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRL  759 (774)
T ss_pred             HHHcCCcc------cCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHH
Confidence            22222221      47889999999999999999999999999997654

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-44  Score=300.12  Aligned_cols=224  Identities=20%  Similarity=0.183  Sum_probs=192.5

Q ss_pred             HHhhhccccccCCCCCCCCcchhHH----------HHHH-HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSC----------MRAL-MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~----------~~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ....+|...++||+|+|  |+|+.+          ++++ |+.+....+.+...+|..+|.+++||.||++.-.|.+...
T Consensus        22 ~~~~dF~~lkviGkG~f--GkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~k   99 (357)
T KOG0598|consen   22 VGPDDFEILKVIGKGSF--GKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEK   99 (357)
T ss_pred             CChhheeeeeeeeccCC--ceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCe
Confidence            34578999999999999  999988          5555 3344444567778899999999999999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      +|||+||+.||.|..+|++  ++.+++.....++.+|+.||.|||+.   +|+||||||+|||++..|+++|+|||+++.
T Consensus       100 LylVld~~~GGeLf~hL~~--eg~F~E~~arfYlaEi~lAL~~LH~~---gIiyRDlKPENILLd~~GHi~LtDFgL~k~  174 (357)
T KOG0598|consen  100 LYLVLDYLNGGELFYHLQR--EGRFSEDRARFYLAEIVLALGYLHSK---GIIYRDLKPENILLDEQGHIKLTDFGLCKE  174 (357)
T ss_pred             EEEEEeccCCccHHHHHHh--cCCcchhHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHeeecCCCcEEEeccccchh
Confidence            9999999999999999985  67899999999999999999999999   999999999999999999999999999973


Q ss_pred             -----------cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          168 -----------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       168 -----------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                                 .+|+.|||||++....|+..+|.||+|+++|||++|.+||......                .....+.
T Consensus       175 ~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~----------------~~~~~I~  238 (357)
T KOG0598|consen  175 DLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVK----------------KMYDKIL  238 (357)
T ss_pred             cccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHH----------------HHHHHHh
Confidence                       3378899999999999999999999999999999999999755211                1122222


Q ss_pred             cCC--ccCHHHHHHHHHHHHHhhccCCCCCC
Q 048314          237 RGT--EVDKKNLENLVKVGLWCVQDEPALRP  265 (274)
Q Consensus       237 ~~~--~~~~~~~~~~~~li~~cl~~dp~~Rp  265 (274)
                      ..+  ..|.-.+.+..+++...|+.||++|-
T Consensus       239 ~~k~~~~p~~ls~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  239 KGKLPLPPGYLSEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             cCcCCCCCccCCHHHHHHHHHHhccCHHHhc
Confidence            222  23444678899999999999999995

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.5e-45  Score=295.34  Aligned_cols=235  Identities=19%  Similarity=0.225  Sum_probs=187.2

Q ss_pred             HhhhccccccCCCCCCCCcchhHH-------HHHHHHHh---cCCCCCCcHHHHHHHHhcCCCCccceEeEE-EEeCCc-
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSC-------MRALMATV---NSPYSPSRPLTLTSIVSRVSWTTDIEVSSV-AMRGSK-   87 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~---~~~~~~~~~~~e~~~l~~l~h~niv~l~~~-~~~~~~-   87 (274)
                      ...+|.....||.|.|  |.||++       .++.|++-   -+....+....|+.+|++|+|||||+++++ +.++.. 
T Consensus        17 ~l~~y~Il~~IG~GsF--g~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~ev   94 (375)
T KOG0591|consen   17 TLADYQILKKIGRGSF--GEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEV   94 (375)
T ss_pred             cHHHHHHHHHHcCCcc--hheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchh
Confidence            3456778888999999  999999       33333321   111234556789999999999999999994 455555 


Q ss_pred             ceEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--cccCCCCCCceEEcCCCcEEEeccc
Q 048314           88 PSTEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDEFWTAKISDFG  163 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~~~~~~kl~d~g  163 (274)
                      .+||||||.+|+|.+.++..  ..+.++++++|+++.|++.||..+|+. .+.  ++||||||.||+++.++.+||+|||
T Consensus        95 lnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~-~~r~~VmHRDIKPaNIFl~~~gvvKLGDfG  173 (375)
T KOG0591|consen   95 LNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSK-IPRGTVMHRDIKPANIFLTANGVVKLGDFG  173 (375)
T ss_pred             hHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhcc-ccccceeeccCcchheEEcCCCceeeccch
Confidence            89999999999999999865  334599999999999999999999994 224  9999999999999999999999999


Q ss_pred             cceecC-----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          164 LAKLLS-----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       164 ~~~~~~-----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      +++...           ||.||+||.+...+|+.++||||+||++|||..-.+||...       ++.. +...+.++..
T Consensus       174 L~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~-------n~~~-L~~KI~qgd~  245 (375)
T KOG0591|consen  174 LGRFLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD-------NLLS-LCKKIEQGDY  245 (375)
T ss_pred             hHhHhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc-------cHHH-HHHHHHcCCC
Confidence            998654           89999999999999999999999999999999999999744       1111 1111122211


Q ss_pred             hhhhcCCccC-HHHHHHHHHHHHHhhccCCCCCCChhhHH
Q 048314          233 NKLVRGTEVD-KKNLENLVKVGLWCVQDEPALRPSMKCVV  271 (274)
Q Consensus       233 ~~~~~~~~~~-~~~~~~~~~li~~cl~~dp~~Rps~~evl  271 (274)
                      .      +.| ...+.++..+|..|+..||+.||+...++
T Consensus       246 ~------~~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v  279 (375)
T KOG0591|consen  246 P------PLPDEHYSTDLRELINMCIAVDPEQRPDTVPYV  279 (375)
T ss_pred             C------CCcHHHhhhHHHHHHHHHccCCcccCCCcchHH
Confidence            1      234 67789999999999999999999854433

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-43  Score=297.75  Aligned_cols=235  Identities=20%  Similarity=0.224  Sum_probs=185.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC--cceE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS--KPST   90 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~l   90 (274)
                      ..++....++|+|.|  |.||.+..      .++|.....  ...+.+.+|+.+|++++|||||+++|......  ..++
T Consensus        16 ~~~~~~~~~lG~Gs~--G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i   93 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSF--GSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNI   93 (313)
T ss_pred             cchhhhhccccCccc--eEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEe
Confidence            345666889999999  99999822      223322221  11344689999999999999999999854444  6899


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEeccccceec-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKISDFGLAKLL-  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~d~g~~~~~-  168 (274)
                      .|||+++|||.+++.+... .++++.++.+..|+++||.|||++   +++|+||||+|||++. ++.+||+|||++... 
T Consensus        94 ~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~---g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~  169 (313)
T KOG0198|consen   94 FMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSK---GIVHCDIKPANILLDPSNGDVKLADFGLAKKLE  169 (313)
T ss_pred             eeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCcccceEEEeCCCCeEEeccCccccccc
Confidence            9999999999999998544 799999999999999999999999   9999999999999999 799999999977532 


Q ss_pred             -------------CCCCcCCCcccccCC-CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 -------------SDKGCMAPECYKRTP-ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 -------------~~~~~~ape~~~~~~-~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                                   +++.|||||++..+. ...++||||+||++.||+||..||... .     ....+.........   
T Consensus       170 ~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~-~-----~~~~~~~~ig~~~~---  240 (313)
T KOG0198|consen  170 SKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF-F-----EEAEALLLIGREDS---  240 (313)
T ss_pred             cccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh-c-----chHHHHHHHhccCC---
Confidence                         267799999998643 335999999999999999999999642 0     01111111111110   


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                        -| ++|...+.+..+++..|+..||++||||.++++.
T Consensus       241 --~P-~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~h  276 (313)
T KOG0198|consen  241 --LP-EIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEH  276 (313)
T ss_pred             --CC-CCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhC
Confidence              11 4666788899999999999999999999999874

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=4.3e-42  Score=300.98  Aligned_cols=236  Identities=16%  Similarity=0.213  Sum_probs=186.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRG   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~   85 (274)
                      .++|...+.||.|+|  |.||++.           ..++|.....   ...+.+.+|+.++.++ +||||++++++|.+.
T Consensus         6 ~~~~~~~~~lG~G~f--g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~   83 (338)
T cd05102           6 RDRLRLGKVLGHGAF--GKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKP   83 (338)
T ss_pred             hhHceeeeEeccCCc--ceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCC
Confidence            456777889999999  9999872           2334443322   1234577999999999 899999999998764


Q ss_pred             -CcceEEEEeCCCCCHHHHHHhCC--------------------------------------------------------
Q 048314           86 -SKPSTEAALDLPWDLAYIIFCSA--------------------------------------------------------  108 (274)
Q Consensus        86 -~~~~lv~e~~~~gsL~~~l~~~~--------------------------------------------------------  108 (274)
                       +..+++|||+++|+|.+++....                                                        
T Consensus        84 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (338)
T cd05102          84 NGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQET  163 (338)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhc
Confidence             45789999999999999997531                                                        


Q ss_pred             ----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-------------CC
Q 048314          109 ----ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-------------DK  171 (274)
Q Consensus       109 ----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-------------~~  171 (274)
                          ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||+++...             +.
T Consensus       164 ~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~  240 (338)
T cd05102         164 DDLWKSPLTMEDLICYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPL  240 (338)
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCc
Confidence                13478889999999999999999999   99999999999999999999999999986431             24


Q ss_pred             CcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHH
Q 048314          172 GCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLV  250 (274)
Q Consensus       172 ~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (274)
                      .|+|||.+....++.++||||||+++|||++ |..||........   +.    ....++..      ...+...++.+.
T Consensus       241 ~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~---~~----~~~~~~~~------~~~~~~~~~~l~  307 (338)
T cd05102         241 KWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEE---FC----QRLKDGTR------MRAPENATPEIY  307 (338)
T ss_pred             cccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHH---HH----HHHhcCCC------CCCCCCCCHHHH
Confidence            6999999988889999999999999999997 9999864321111   10    11111110      113345567899


Q ss_pred             HHHHHhhccCCCCCCChhhHHhhC
Q 048314          251 KVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       251 ~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +++.+||+.||++|||+.||++.|
T Consensus       308 ~li~~cl~~dp~~RPs~~el~~~l  331 (338)
T cd05102         308 RIMLACWQGDPKERPTFSALVEIL  331 (338)
T ss_pred             HHHHHHccCChhhCcCHHHHHHHH
Confidence            999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-42  Score=304.08  Aligned_cols=230  Identities=18%  Similarity=0.172  Sum_probs=189.3

Q ss_pred             hccccccCCCCCCCCcchhHH-------HHHHHHHhcCCCCCCc-HHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSPYSPSR-PLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~~~~~~-~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      .|..-..+|.|.-  |.||.+       .+++++....++..++ .++|+.+|+..+|+|||+++..+...+.+++||||
T Consensus       274 ~y~~~~kigqgaS--G~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEy  351 (550)
T KOG0578|consen  274 KYTDFKKIGQGAT--GGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEY  351 (550)
T ss_pred             hhcchhhhccccc--cceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEee
Confidence            4455666899998  999988       3333333333344444 46999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec------
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL------  168 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~------  168 (274)
                      |.+|+|.|.+..   ..+++.++..+++++++||+|||.+   +|+|||||.+|||+..++.+||+|||++...      
T Consensus       352 m~ggsLTDvVt~---~~~~E~qIA~Icre~l~aL~fLH~~---gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~K  425 (550)
T KOG0578|consen  352 MEGGSLTDVVTK---TRMTEGQIAAICREILQGLKFLHAR---GIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSK  425 (550)
T ss_pred             cCCCchhhhhhc---ccccHHHHHHHHHHHHHHHHHHHhc---ceeeeccccceeEeccCCcEEEeeeeeeeccccccCc
Confidence            999999999965   4599999999999999999999999   9999999999999999999999999998654      


Q ss_pred             -----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          169 -----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       169 -----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                           +|+.|||||++....|+.++||||||++++||+.|.+||... .+-....      ....++. .+    -..+.
T Consensus       426 R~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE-~PlrAly------LIa~ng~-P~----lk~~~  493 (550)
T KOG0578|consen  426 RSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNE-NPLRALY------LIATNGT-PK----LKNPE  493 (550)
T ss_pred             cccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCC-ChHHHHH------HHhhcCC-CC----cCCcc
Confidence                 388999999999999999999999999999999999999643 1111111      1111111 00    03566


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          244 KNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+..+.+++.+||+.|+++|||+.|+|+
T Consensus       494 klS~~~kdFL~~cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  494 KLSPELKDFLDRCLVVDVEQRASAKELLE  522 (550)
T ss_pred             ccCHHHHHHHHHHhhcchhcCCCHHHHhc
Confidence            77889999999999999999999999986

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-42  Score=297.50  Aligned_cols=244  Identities=18%  Similarity=0.152  Sum_probs=191.8

Q ss_pred             hhhccccccCCCCCCCCcchhHH-------HHHHHHHhcCCCCCCcH--HHHHHHHhcCC-CCccceEeEEEEeCC-cce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSPYSPSRP--LTLTSIVSRVS-WTTDIEVSSVAMRGS-KPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~~~~~~~--~~e~~~l~~l~-h~niv~l~~~~~~~~-~~~   89 (274)
                      .++|.....+|.|+|  |.||++       .+|+|+..++-...++.  ++|++.|++++ |||||++.+++.+.+ .++
T Consensus         9 m~RY~~i~klGDGTf--GsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~   86 (538)
T KOG0661|consen    9 MDRYTVIRKLGDGTF--GSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILY   86 (538)
T ss_pred             HHHHHHHHHhcCCcc--eeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEe
Confidence            345666777999999  999999       56666666555555554  48999999999 999999999998887 899


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +|||||+ .+|++.++.+ +..|++..++.|+.||++||+|+|.+   |+.|||+||+|||+.....+||+|||+++...
T Consensus        87 fVfE~Md-~NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~---GfFHRDlKPENiLi~~~~~iKiaDFGLARev~  161 (538)
T KOG0661|consen   87 FVFEFMD-CNLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKH---GFFHRDLKPENILISGNDVIKIADFGLAREVR  161 (538)
T ss_pred             eeHHhhh-hhHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhc---CcccccCChhheEecccceeEecccccccccc
Confidence            9999997 5999999984 78899999999999999999999999   99999999999999988899999999998754


Q ss_pred             ----------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH----------HHh
Q 048314          170 ----------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK----------CFI  228 (274)
Q Consensus       170 ----------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~----------~~~  228 (274)
                                |.-|+|||++.. +-|+.+.|+|++||+++|+.+-++.|... .+.+++.-.-.+..          ...
T Consensus       162 SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~-sE~Dqi~KIc~VLGtP~~~~~~eg~~L  240 (538)
T KOG0661|consen  162 SKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGA-SEIDQIYKICEVLGTPDKDSWPEGYNL  240 (538)
T ss_pred             cCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCC-cHHHHHHHHHHHhCCCccccchhHHHH
Confidence                      567999998764 57899999999999999999988888644 22221111000000          000


Q ss_pred             hhhhh---hhhcCC----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          229 NRELN---KLVRGT----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       229 ~~~~~---~~~~~~----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ...+.   ..+.+.    ..+. ++.++.++|.+|+.+||++|||++|.+++
T Consensus       241 a~~mnf~~P~~~~~~l~~L~p~-~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  241 ASAMNFRFPQVKPSPLKDLLPN-ASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             HHHhccCCCcCCCCChHHhCcc-cCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence            00000   001111    1233 67899999999999999999999999874

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1e-41  Score=299.04  Aligned_cols=222  Identities=22%  Similarity=0.222  Sum_probs=186.0

Q ss_pred             cccCCCCCCCCcchhHH-----HHHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHH
Q 048314           27 SSLNDRNSPRSKSVWSC-----MRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLA  101 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~-----~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~  101 (274)
                      ..-+|.|.-  |.||.|     .+++||...-      -..+|+-|++|+|||||.+.|+|...+-+|||||||+.|-|+
T Consensus       129 LeWlGSGaQ--GAVF~Grl~netVAVKKV~el------kETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~  200 (904)
T KOG4721|consen  129 LEWLGSGAQ--GAVFLGRLHNETVAVKKVREL------KETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLY  200 (904)
T ss_pred             hhhhccCcc--cceeeeeccCceehhHHHhhh------hhhhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHH
Confidence            455899999  999999     4444443322      236899999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----------CC
Q 048314          102 YIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----------DK  171 (274)
Q Consensus       102 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----------~~  171 (274)
                      .+|+.  +..+.-...++|..+||.|+.|||.+   .|||||||..|||+..+-.+||+|||.++...          |.
T Consensus       201 ~VLka--~~~itp~llv~Wsk~IA~GM~YLH~h---KIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMSFaGTV  275 (904)
T KOG4721|consen  201 EVLKA--GRPITPSLLVDWSKGIAGGMNYLHLH---KIIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMSFAGTV  275 (904)
T ss_pred             HHHhc--cCccCHHHHHHHHHHhhhhhHHHHHh---hHhhhccCCCceEeeccceEEeccccchHhhhhhhhhhhhhhhH
Confidence            99985  56788899999999999999999999   99999999999999999999999999986543          67


Q ss_pred             CcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHH
Q 048314          172 GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVK  251 (274)
Q Consensus       172 ~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (274)
                      .|||||++...+.+.|+|||||||+||||+||..||...+...       .+|     +.-.+.+. -+.|..+++.++-
T Consensus       276 aWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssA-------IIw-----GVGsNsL~-LpvPstcP~Gfkl  342 (904)
T KOG4721|consen  276 AWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSA-------IIW-----GVGSNSLH-LPVPSTCPDGFKL  342 (904)
T ss_pred             hhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchhe-------eEE-----eccCCccc-ccCcccCchHHHH
Confidence            8999999999999999999999999999999999996431110       000     00001110 0467789999999


Q ss_pred             HHHHhhccCCCCCCChhhHHhhC
Q 048314          252 VGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       252 li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      |+++||+..|.+|||+.+++..|
T Consensus       343 L~Kqcw~sKpRNRPSFrqil~Hl  365 (904)
T KOG4721|consen  343 LLKQCWNSKPRNRPSFRQILLHL  365 (904)
T ss_pred             HHHHHHhcCCCCCccHHHHHHHH
Confidence            99999999999999999998764

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-41  Score=291.15  Aligned_cols=229  Identities=15%  Similarity=0.147  Sum_probs=180.0

Q ss_pred             cccCCCCCCCCcchhHH-----HHHHHHHhcCCCC----CCcHHHHHHHHhcCCCCccceEeEEEEe----CCcceEEEE
Q 048314           27 SSLNDRNSPRSKSVWSC-----MRALMATVNSPYS----PSRPLTLTSIVSRVSWTTDIEVSSVAMR----GSKPSTEAA   93 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~-----~~~~~~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~e   93 (274)
                      ...+++|++  +.||+|     .++++........    .+.+.+|+.+|++++||||++++|++.+    ....++|||
T Consensus        25 ~~~i~~g~~--~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~E  102 (283)
T PHA02988         25 SVLIKENDQ--NSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILE  102 (283)
T ss_pred             CeEEeeCCc--eEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEE
Confidence            467899999  999999     2222221111112    2456699999999999999999999877    346799999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee------
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL------  167 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~------  167 (274)
                      |+++|+|.+++..  .+.+++.....++.|++.|+.|||+.  .+++||||||+||+++.++.+|++|||+++.      
T Consensus       103 y~~~g~L~~~l~~--~~~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~  178 (283)
T PHA02988        103 YCTRGYLREVLDK--EKDLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPF  178 (283)
T ss_pred             eCCCCcHHHHHhh--CCCCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEECCCCcEEEcccchHhhhccccc
Confidence            9999999999975  45789999999999999999999973  1788999999999999999999999999864      


Q ss_pred             --cCCCCcCCCccccc--CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          168 --LSDKGCMAPECYKR--TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       168 --~~~~~~~ape~~~~--~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                        .++..|+|||++..  ..++.++|||||||++|||++|..||....  ..  .+..    .......     ....+.
T Consensus       179 ~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~--~~--~~~~----~i~~~~~-----~~~~~~  245 (283)
T PHA02988        179 KNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLT--TK--EIYD----LIINKNN-----SLKLPL  245 (283)
T ss_pred             cccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCC--HH--HHHH----HHHhcCC-----CCCCCC
Confidence              23567999999875  678999999999999999999999997431  11  1111    0100000     012344


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          244 KNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .++..+.+++.+||+.||++|||+.|+++.|
T Consensus       246 ~~~~~l~~li~~cl~~dp~~Rps~~ell~~l  276 (283)
T PHA02988        246 DCPLEIKCIVEACTSHDSIKRPNIKEILYNL  276 (283)
T ss_pred             cCcHHHHHHHHHHhcCCcccCcCHHHHHHHH
Confidence            5678899999999999999999999999865

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=2.6e-42  Score=302.61  Aligned_cols=227  Identities=22%  Similarity=0.233  Sum_probs=190.4

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-------HHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-------ALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-------~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ++|.....||+|+|  |.||||.+       +++-+.+.   ..+.+...+|++++++++|||||.+++||....++++|
T Consensus         2 e~yhv~e~iG~Gsf--g~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vV   79 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSF--GRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVV   79 (808)
T ss_pred             cchhHHHHhcCCcc--ceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEE
Confidence            46777788999999  99999922       11111111   12233467999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      .|||.| +|..++..  ++.+++..+..++.|++.||.|||+.   +|+|||+||.|||++..+++|++|||+++.++  
T Consensus        80 te~a~g-~L~~il~~--d~~lpEe~v~~~a~~LVsaL~yLhs~---rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~  153 (808)
T KOG0597|consen   80 TEYAVG-DLFTILEQ--DGKLPEEQVRAIAYDLVSALYYLHSN---RILHRDMKPQNILLEKGGTLKLCDFGLARAMSTN  153 (808)
T ss_pred             ehhhhh-hHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHhc---CcccccCCcceeeecCCCceeechhhhhhhcccC
Confidence            999986 99999986  67899999999999999999999999   99999999999999999999999999997654  


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh-cCC
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV-RGT  239 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  239 (274)
                               ++-|||||.+...+|+..+|+||+||++||+++|++||...       .+...+         ..+. ++.
T Consensus       154 t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~-------si~~Lv---------~~I~~d~v  217 (808)
T KOG0597|consen  154 TSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYAR-------SITQLV---------KSILKDPV  217 (808)
T ss_pred             ceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHH-------HHHHHH---------HHHhcCCC
Confidence                     78899999999999999999999999999999999999632       111111         1121 222


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..|...+..+.+++...|++||.+|.|..+++.
T Consensus       218 ~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~  250 (808)
T KOG0597|consen  218 KPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLG  250 (808)
T ss_pred             CCcccccHHHHHHHHHHhhcChhhcccHHHHhc
Confidence            456677889999999999999999999998874

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-42  Score=324.84  Aligned_cols=229  Identities=24%  Similarity=0.281  Sum_probs=190.0

Q ss_pred             cccCCCCCCCCcchhHHH------------HHHHHH--hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           27 SSLNDRNSPRSKSVWSCM------------RALMAT--VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~------------~~~~~~--~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ..+||+|.|  |.||+|+            +++|..  ..+.+...+|++|..+|+.++|||||+++|+|.+...+++++
T Consensus       697 ~~~lG~G~F--G~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~l  774 (1025)
T KOG1095|consen  697 LRVLGKGAF--GEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILL  774 (1025)
T ss_pred             eeeeccccc--cceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEe
Confidence            578999999  9999991            222222  222255677999999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCC-----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           93 ALDLPWDLAYIIFCSA-----ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      |||.+|+|..||++.+     ...++...++.++.|+|.|..||++.   +.+||||..+|||++....+||+|||+++.
T Consensus       775 eyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~---~fvHRDLAaRNCLL~~~r~VKIaDFGlArD  851 (1025)
T KOG1095|consen  775 EYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK---HFVHRDLAARNCLLDERRVVKIADFGLARD  851 (1025)
T ss_pred             hhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC---CCcCcchhhhheeecccCcEEEcccchhHh
Confidence            9999999999999741     35589999999999999999999999   999999999999999999999999999984


Q ss_pred             cC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          168 LS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       168 ~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      +.             -.+|||||.+..+.++.|+|||||||++||+++ |..||...   .+...+..    ....++  
T Consensus       852 iy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~---~n~~v~~~----~~~ggR--  922 (1025)
T KOG1095|consen  852 IYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSR---SNFEVLLD----VLEGGR--  922 (1025)
T ss_pred             hhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCc---chHHHHHH----HHhCCc--
Confidence            32             246999999999999999999999999999998 67888533   11111111    111110  


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                           -+.|..|++.+.++|.+||+.+|++||++..+++.+
T Consensus       923 -----L~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~  958 (1025)
T KOG1095|consen  923 -----LDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQD  958 (1025)
T ss_pred             -----cCCCCCCChHHHHHHHHHccCChhhCccHHHHHhhh
Confidence                 147889999999999999999999999999998753

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=5e-42  Score=281.03  Aligned_cols=242  Identities=19%  Similarity=0.163  Sum_probs=185.4

Q ss_pred             hccccccCCCCCCCCcchhHH-------HHHHHHHhcCCCC---CCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSPYS---PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .|.....+|+|++  |.||||       .+|+++...+.++   .+-.++|+++|++++|||+|.++.+|......+||+
T Consensus         3 kYE~LgkvGEGSY--GvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVF   80 (396)
T KOG0593|consen    3 KYEKLGKVGEGSY--GVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVF   80 (396)
T ss_pred             HHhhhhccccCcc--eEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEe
Confidence            4556778999999  999999       4444555444322   233469999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      |||++ ++.+-|.. ...+++...++.++.|++.|+.|+|++   +++||||||+|||+..++.+||+|||+++...   
T Consensus        81 E~~dh-TvL~eLe~-~p~G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pg  155 (396)
T KOG0593|consen   81 EYCDH-TVLHELER-YPNGVPSELVKKYLYQLLKAIHFCHKN---NCIHRDIKPENILITQNGVVKLCDFGFARTLSAPG  155 (396)
T ss_pred             eecch-HHHHHHHh-ccCCCCHHHHHHHHHHHHHHhhhhhhc---CeecccCChhheEEecCCcEEeccchhhHhhcCCc
Confidence            99986 55555655 356789999999999999999999999   99999999999999999999999999998766   


Q ss_pred             --------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH--------HHhhhh-
Q 048314          170 --------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK--------CFINRE-  231 (274)
Q Consensus       170 --------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~--------~~~~~~-  231 (274)
                              |..|+|||.+.+ ..|+..+|||++||++.||++|.+.|... +..+...+..-...        .+.... 
T Consensus       156 d~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~-SDiDQLy~I~ktLG~L~prhq~iF~~N~~  234 (396)
T KOG0593|consen  156 DNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGR-SDIDQLYLIRKTLGNLIPRHQSIFSSNPF  234 (396)
T ss_pred             chhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCc-chHHHHHHHHHHHcccCHHHHHHhccCCc
Confidence                    445899999887 68999999999999999999999999644 22222222111111        111100 


Q ss_pred             -----hhhhhcCCc---cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          232 -----LNKLVRGTE---VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       232 -----~~~~~~~~~---~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                           ++..-++.+   .-...+.-+.+++..||+.||.+|+|.+|++.
T Consensus       235 F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  235 FHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             eeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhc
Confidence                 011111111   11122457889999999999999999999875

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-42  Score=304.91  Aligned_cols=229  Identities=21%  Similarity=0.226  Sum_probs=187.1

Q ss_pred             cccCCCCCCCCcchhHH---H-----H--HHHHHhc-----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           27 SSLNDRNSPRSKSVWSC---M-----R--ALMATVN-----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~---~-----~--~~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ...+|+|.|  |.||+|   .     .  ++++...     ......+|++|+++|++++|||||++||++.....+++|
T Consensus       162 ~kkLGeGaF--GeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~iv  239 (474)
T KOG0194|consen  162 GKKLGEGAF--GEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLV  239 (474)
T ss_pred             cceeecccc--cEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEE
Confidence            578999999  999999   1     1  1222211     123456688999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      ||+|.||+|.++|... ...++..++..++.+.+.||+|||+.   +++||||-.+|||++.++.+||+|||+++...  
T Consensus       240 mEl~~gGsL~~~L~k~-~~~v~~~ek~~~~~~AA~Gl~YLh~k---~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~  315 (474)
T KOG0194|consen  240 MELCNGGSLDDYLKKN-KKSLPTLEKLRFCYDAARGLEYLHSK---NCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQY  315 (474)
T ss_pred             EEecCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHhHHHHHHHC---CCcchhHhHHHheecCCCeEEeCccccccCCcce
Confidence            9999999999999973 33699999999999999999999999   99999999999999999999999999987653  


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               ...|+|||.+..+.|+.++|||||||++||+++ |..||.....    ..+..++.   .+      -.+.
T Consensus       316 ~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~----~~v~~kI~---~~------~~r~  382 (474)
T KOG0194|consen  316 VMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKN----YEVKAKIV---KN------GYRM  382 (474)
T ss_pred             eeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCH----HHHHHHHH---hc------CccC
Confidence                     246999999999999999999999999999988 7888864311    11111100   00      0111


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..|...+..+..++.+||..||++||||.++.+.|
T Consensus       383 ~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l  417 (474)
T KOG0194|consen  383 PIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKL  417 (474)
T ss_pred             CCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHH
Confidence            45667888999999999999999999999998753

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-41  Score=270.75  Aligned_cols=232  Identities=13%  Similarity=0.114  Sum_probs=198.8

Q ss_pred             HhhhccccccCCCCCCCCcchhHH-----------HHHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSC-----------MRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~-----------~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      +.++|...+.+|+|.|  |.||.+           .+++|..+........+.+|++|-+.|+||||+++|++|.+....
T Consensus        20 ~l~dfeigr~LgkgkF--G~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~ri   97 (281)
T KOG0580|consen   20 TLDDFEIGRPLGKGKF--GNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRI   97 (281)
T ss_pred             chhhccccccccCCcc--ccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheecccee
Confidence            4578999999999999  999998           233355666666778888999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ||++||.++|++...|.......+++.....+..|+|.||.|+|..   +++|||+||+|+|++..+.+|++|||.+...
T Consensus        98 yLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k---~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~  174 (281)
T KOG0580|consen   98 YLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLK---RVIHRDIKPENLLLGSAGELKIADFGWSVHA  174 (281)
T ss_pred             EEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccC---CcccCCCCHHHhccCCCCCeeccCCCceeec
Confidence            9999999999999999976667799999999999999999999999   9999999999999999999999999998654


Q ss_pred             C---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 S---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ~---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                      .         +..|++||+..+..++..+|+|++|++.||++.|.+||......                ....++..-+
T Consensus       175 p~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~----------------etYkrI~k~~  238 (281)
T KOG0580|consen  175 PSNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHS----------------ETYKRIRKVD  238 (281)
T ss_pred             CCCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhH----------------HHHHHHHHcc
Confidence            3         66799999999999999999999999999999999999744211                1111111111


Q ss_pred             -ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 -EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 -~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       .+|...+....++|.+|+..+|.+|.+..|+++
T Consensus       239 ~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~  272 (281)
T KOG0580|consen  239 LKFPSTISGGAADLISRLLVKNPIERLALTEVMD  272 (281)
T ss_pred             ccCCcccChhHHHHHHHHhccCccccccHHHHhh
Confidence             244566678899999999999999999999875

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-41  Score=301.15  Aligned_cols=228  Identities=16%  Similarity=0.177  Sum_probs=194.9

Q ss_pred             cccCCCCCCCCcchhHH-------HHHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCC
Q 048314           27 SSLNDRNSPRSKSVWSC-------MRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWD   99 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs   99 (274)
                      .+.+|.|-+  |.||.|       .++++....+....++|+.|+.+|+.++|||+|+|+|+|.....+|||+|||+.|+
T Consensus       272 khKLGGGQY--GeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGN  349 (1157)
T KOG4278|consen  272 KHKLGGGQY--GEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGN  349 (1157)
T ss_pred             eeccCCCcc--cceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCcc
Confidence            566999999  999999       44455555555678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----------
Q 048314          100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----------  169 (274)
Q Consensus       100 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----------  169 (274)
                      |.+||.+.+...++--.++.|+.||..|+.||..+   ++|||||..+|||+..+-.+|++|||+++++.          
T Consensus       350 LLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkk---nFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGA  426 (1157)
T KOG4278|consen  350 LLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAGA  426 (1157)
T ss_pred             HHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceEEeeccchhhhhcCCceecccCc
Confidence            99999987777788888999999999999999999   99999999999999999999999999999876          


Q ss_pred             --CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHH
Q 048314          170 --DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNL  246 (274)
Q Consensus       170 --~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (274)
                        ...|+|||.+....++.|+|||+|||+|||+.| |-.||...+       +.+ +..++.++      .....|..|+
T Consensus       427 KFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGid-------lSq-VY~LLEkg------yRM~~PeGCP  492 (1157)
T KOG4278|consen  427 KFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGID-------LSQ-VYGLLEKG------YRMDGPEGCP  492 (1157)
T ss_pred             cCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCcc-------HHH-HHHHHhcc------ccccCCCCCC
Confidence              235999999999999999999999999999976 778886431       111 11111111      1114788999


Q ss_pred             HHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          247 ENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       247 ~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      +...+||+.||+++|.+||+++|+.+.
T Consensus       493 pkVYeLMraCW~WsPsDRPsFaeiHqa  519 (1157)
T KOG4278|consen  493 PKVYELMRACWNWSPSDRPSFAEIHQA  519 (1157)
T ss_pred             HHHHHHHHHHhcCCcccCccHHHHHHH
Confidence            999999999999999999999998654

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.8e-41  Score=291.98  Aligned_cols=241  Identities=18%  Similarity=0.155  Sum_probs=186.6

Q ss_pred             hhhccccccCCCCCCCCcchhHH-------HHHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeC--Ccc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--SKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~   88 (274)
                      ...|.....||+|.|  |.||++       ++|.||+.-+.   ....-..+||.+|++|+||||++|.+...+.  +.+
T Consensus       116 ~~~feki~kIGeGTy--g~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~si  193 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTY--GQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSI  193 (560)
T ss_pred             hHHHHHHHHhcCcch--hheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceE
Confidence            456777888999999  999999       34444422221   2233346999999999999999999999876  789


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      |||+|||++ +|..++.. ..-.|+..+++.++.|++.||.|+|++   +++|||||.+|||++++|.+||+|||++++.
T Consensus       194 YlVFeYMdh-DL~GLl~~-p~vkft~~qIKc~mkQLl~Gl~~cH~~---gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y  268 (560)
T KOG0600|consen  194 YLVFEYMDH-DLSGLLSS-PGVKFTEPQIKCYMKQLLEGLEYCHSR---GVLHRDIKGSNILIDNNGVLKIADFGLARFY  268 (560)
T ss_pred             EEEEecccc-hhhhhhcC-CCcccChHHHHHHHHHHHHHHHHHhhc---CeeeccccccceEEcCCCCEEeccccceeec
Confidence            999999986 89888875 556799999999999999999999999   9999999999999999999999999999865


Q ss_pred             C------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh-----
Q 048314          169 S------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR-----  230 (274)
Q Consensus       169 ~------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-----  230 (274)
                      .            |.-|+|||++.+. .|+..+|+||.||++.||+.|++.|+..    .+.....-++......     
T Consensus       269 ~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~----tEveQl~kIfklcGSP~e~~W  344 (560)
T KOG0600|consen  269 TPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGR----TEVEQLHKIFKLCGSPTEDYW  344 (560)
T ss_pred             cCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCc----cHHHHHHHHHHHhCCCChhcc
Confidence            4            4459999999875 6999999999999999999999999753    1111111111111110     


Q ss_pred             ---hhh--hhhcCC--------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          231 ---ELN--KLVRGT--------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       231 ---~~~--~~~~~~--------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         .+.  ..+.+.        +.-...+....+|+..+|..||.+|.|+.++++
T Consensus       345 ~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  345 PVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             ccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence               000  111111        111122467789999999999999999999875

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=4.9e-41  Score=284.72  Aligned_cols=234  Identities=16%  Similarity=0.124  Sum_probs=186.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      .++|...+.+|+|+|  |.||+|..         .++|.....   .....+.+|+.++++++||||+++++++..++..
T Consensus         4 ~~~~~~~~~ig~G~f--g~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   81 (266)
T cd05064           4 NKSIKIERILGTGRF--GELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTM   81 (266)
T ss_pred             hHHeEEeeeecccCC--CeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCc
Confidence            356777889999999  99998721         112222221   1224577999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||||+++|+|.+++.. ....+++..++.++.|++.||+|||+.   +++|+||||+||+++.++.++++|||.+...
T Consensus        82 ~lv~e~~~~~~L~~~l~~-~~~~l~~~~~~~~~~~i~~al~~lH~~---~iiH~dikp~nili~~~~~~~l~dfg~~~~~  157 (266)
T cd05064          82 MIVTEYMSNGALDSFLRK-HEGQLVAGQLMGMLPGLASGMKYLSEM---GYVHKGLAAHKVLVNSDLVCKISGFRRLQED  157 (266)
T ss_pred             EEEEEeCCCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeeccccHhhEEEcCCCcEEECCCcccccc
Confidence            999999999999999976 345789999999999999999999999   9999999999999999999999999976532


Q ss_pred             C------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          169 S------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       169 ~------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      .            +..|+|||.+....++.++||||||+++||+++ |..||.....   . ...    ....+.     
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~---~-~~~----~~~~~~-----  224 (266)
T cd05064         158 KSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSG---Q-DVI----KAVEDG-----  224 (266)
T ss_pred             cccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCH---H-HHH----HHHHCC-----
Confidence            1            246999999988899999999999999999775 9999964311   0 011    111111     


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      . ..+.+..++..+.+++..||+.+|++|||+.++++.|
T Consensus       225 ~-~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l  262 (266)
T cd05064         225 F-RLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSIL  262 (266)
T ss_pred             C-CCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHH
Confidence            0 1123445677899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9e-41  Score=293.52  Aligned_cols=231  Identities=19%  Similarity=0.184  Sum_probs=189.4

Q ss_pred             HHhhhccccccCCCCCCCCcchhHH------HHHHHHHhcCC-------CCCCcHHHHHHHHhcCC-CCccceEeEEEEe
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSC------MRALMATVNSP-------YSPSRPLTLTSIVSRVS-WTTDIEVSSVAMR   84 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~~-------~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~   84 (274)
                      ...+.|...+.+|.|.|  |.|+.+      ...++|.++..       ...+...+|+.++++++ ||||++++.++..
T Consensus        14 ~~~g~y~~~~~lG~Gsf--gkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t   91 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSF--GKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFAT   91 (370)
T ss_pred             cccCceeeeeeecCCCC--eeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEec
Confidence            44567888999999999  999999      11222222221       12333458999999999 9999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcEEEeccc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKISDFG  163 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~d~g  163 (274)
                      ....++|||||.+|+|.+++.+  .+.+.+.....++.|++.|++|+|++   +|+||||||+|++++.+ +++||+|||
T Consensus        92 ~~~~~ivmEy~~gGdL~~~i~~--~g~l~E~~ar~~F~Qlisav~y~H~~---gi~HRDLK~ENilld~~~~~~Kl~DFG  166 (370)
T KOG0583|consen   92 PTKIYIVMEYCSGGDLFDYIVN--KGRLKEDEARKYFRQLISAVAYCHSR---GIVHRDLKPENILLDGNEGNLKLSDFG  166 (370)
T ss_pred             CCeEEEEEEecCCccHHHHHHH--cCCCChHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEecCCCCCEEEeccc
Confidence            9999999999999999999986  67899999999999999999999999   99999999999999999 999999999


Q ss_pred             cceec-C----------CCCcCCCcccccCC-Cc-cccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh
Q 048314          164 LAKLL-S----------DKGCMAPECYKRTP-IS-VKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR  230 (274)
Q Consensus       164 ~~~~~-~----------~~~~~ape~~~~~~-~~-~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      ++... .          ++.|+|||++.... |+ .++||||+|++||.|++|..||....       ......      
T Consensus       167 ~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~-------~~~l~~------  233 (370)
T KOG0583|consen  167 LSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSN-------VPNLYR------  233 (370)
T ss_pred             cccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCcc-------HHHHHH------
Confidence            99866 1          67899999999877 75 89999999999999999999997421       111111      


Q ss_pred             hhhhhhcCC-ccCHHH-HHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          231 ELNKLVRGT-EVDKKN-LENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       231 ~~~~~~~~~-~~~~~~-~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         .+.... .+|... +.++..++.+||..||.+|+|+.++++
T Consensus       234 ---ki~~~~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~  274 (370)
T KOG0583|consen  234 ---KIRKGEFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEILE  274 (370)
T ss_pred             ---HHhcCCccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHhh
Confidence               111121 344444 788999999999999999999999974

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=1.5e-40  Score=284.67  Aligned_cols=233  Identities=18%  Similarity=0.202  Sum_probs=185.1

Q ss_pred             ccccccCCCCCCCCcchhHHH------HHHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCM------RALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~------~~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      |...+.+|+|+|  |.||++.      ..++|.     .........+.+|+.++++++|+||+++++.+.+.+..++||
T Consensus         2 f~~~~~lg~G~~--g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~   79 (285)
T cd05631           2 FRHYRVLGKGGF--GEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVL   79 (285)
T ss_pred             ceEEEEEecCCC--EEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEE
Confidence            556778999999  9999881      111111     111223345779999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      ||+++|+|.+++.......+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...    
T Consensus        80 e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~  156 (285)
T cd05631          80 TIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGE  156 (285)
T ss_pred             EecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCC
Confidence            999999999988764445799999999999999999999999   9999999999999999999999999998653    


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            ++..|+|||++....++.++|||||||++|+|++|+.||..............    .     ...  .....+
T Consensus       157 ~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~----~-----~~~--~~~~~~  225 (285)
T cd05631         157 TVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDR----R-----VKE--DQEEYS  225 (285)
T ss_pred             eecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHH----H-----hhc--ccccCC
Confidence                  25679999999988999999999999999999999999975422111111100    0     000  011234


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCC-----hhhHHh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPS-----MKCVVM  272 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps-----~~evl~  272 (274)
                      ...+..+.+++.+||+.||++|||     ++++++
T Consensus       226 ~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~  260 (285)
T cd05631         226 EKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQ  260 (285)
T ss_pred             ccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhc
Confidence            455678999999999999999997     777765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-40  Score=288.03  Aligned_cols=232  Identities=18%  Similarity=0.162  Sum_probs=193.1

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHH----------HHHH-HHHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeC
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSC----------MRAL-MATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRG   85 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~----------~~~~-~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~   85 (274)
                      ...-+||.-...+|.|.|  +.|+.+          .++. |+.+......+-...|-.+|.+| .||.|++|+--|.|.
T Consensus        69 kk~~~DF~Fg~~lGeGSY--StV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~  146 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSY--STVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDE  146 (604)
T ss_pred             cCChhhcchhheeccccc--eeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecc
Confidence            334578888999999999  999998          2222 33333333445556899999999 699999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      ..+|+|+||+++|+|.++|..  .+.|++...+.++.+|+.||.|||++   |||||||||+|||++.+++++|+|||.+
T Consensus       147 ~sLYFvLe~A~nGdll~~i~K--~Gsfde~caR~YAAeIldAleylH~~---GIIHRDlKPENILLd~dmhikITDFGsA  221 (604)
T KOG0592|consen  147 ESLYFVLEYAPNGDLLDLIKK--YGSFDETCARFYAAEILDALEYLHSN---GIIHRDLKPENILLDKDGHIKITDFGSA  221 (604)
T ss_pred             cceEEEEEecCCCcHHHHHHH--hCcchHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeEcCCCcEEEeecccc
Confidence            999999999999999999985  57899999999999999999999999   9999999999999999999999999998


Q ss_pred             eecC------------------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHH
Q 048314          166 KLLS------------------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN  221 (274)
Q Consensus       166 ~~~~------------------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~  221 (274)
                      +.+.                        |-.|.+||++.....++.+|+|+|||++|+|+.|.+||...    .+..+..
T Consensus       222 K~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~----NeyliFq  297 (604)
T KOG0592|consen  222 KILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAA----NEYLIFQ  297 (604)
T ss_pred             ccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccc----cHHHHHH
Confidence            7654                        34599999999999999999999999999999999999643    1111111


Q ss_pred             HHHHHHhhhhhhhhhcC-CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          222 WVYKCFINRELNKLVRG-TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       222 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                                  ++++- -++|...++...+|+.+.|..||.+|+|+.||-+
T Consensus       298 ------------kI~~l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~  337 (604)
T KOG0592|consen  298 ------------KIQALDYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKA  337 (604)
T ss_pred             ------------HHHHhcccCCCCCCHHHHHHHHHHHccCccccccHHHHhh
Confidence                        11111 1356666688999999999999999999998854

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-42  Score=310.18  Aligned_cols=229  Identities=21%  Similarity=0.219  Sum_probs=194.0

Q ss_pred             ccccccCCCCCCCCcchhHH---------HHHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSC---------MRALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~---------~~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ...+.+||.|.|  |.|++|         .-+++|.++..   ..+.+|+.|+.||.++.||||++|.|+.......++|
T Consensus       631 i~Ie~VIGaGEF--GEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIi  708 (996)
T KOG0196|consen  631 VKIEKVIGAGEF--GEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMII  708 (996)
T ss_pred             eEEEEEEecccc--cceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEE
Confidence            344899999999  999999         11223333333   4577899999999999999999999999999989999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      .|||.+|+|+.||.. +++.+++.+++.|+++|+.|+.||.+.   +++||||..+|||++.+..+|++|||+++.+.  
T Consensus       709 TEyMENGsLDsFLR~-~DGqftviQLVgMLrGIAsGMkYLsdm---~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd  784 (996)
T KOG0196|consen  709 TEYMENGSLDSFLRQ-NDGQFTVIQLVGMLRGIASGMKYLSDM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD  784 (996)
T ss_pred             hhhhhCCcHHHHHhh-cCCceEeehHHHHHHHHHHHhHHHhhc---CchhhhhhhhheeeccceEEEeccccceeecccC
Confidence            999999999999998 556799999999999999999999999   99999999999999999999999999998764  


Q ss_pred             ------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          170 ------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       170 ------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                                  ..+|+|||.+...+++..+||||||+++||+++ |..||-.- +               ....+..+-
T Consensus       785 ~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdm-S---------------NQdVIkaIe  848 (996)
T KOG0196|consen  785 PEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM-S---------------NQDVIKAIE  848 (996)
T ss_pred             CCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCccccc-c---------------hHHHHHHHH
Confidence                        136999999999999999999999999999775 88888522 0               011111222


Q ss_pred             cCC--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          237 RGT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       237 ~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ++-  +.|.+|+..|..||..||++|-.+||++.||+..|
T Consensus       849 ~gyRLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~l  888 (996)
T KOG0196|consen  849 QGYRLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTL  888 (996)
T ss_pred             hccCCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence            222  57889999999999999999999999999998764

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=5.4e-41  Score=298.13  Aligned_cols=236  Identities=17%  Similarity=0.187  Sum_probs=185.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRG   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~   85 (274)
                      .++|...+.||+|+|  |.||+|.           ..++|.....   ...+.+.+|+.++..+ +||||++++++|.+.
T Consensus        34 ~~~~~~~~~LG~G~f--G~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~  111 (375)
T cd05104          34 RNRLSFGKTLGAGAF--GKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVG  111 (375)
T ss_pred             hHHeehhheecCCcc--ceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccC
Confidence            347788899999999  9999872           1122222221   2234577999999999 799999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCC---------------------------------------------------------
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSA---------------------------------------------------------  108 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~---------------------------------------------------------  108 (274)
                      +..++|||||++|+|.+++....                                                         
T Consensus       112 ~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (375)
T cd05104         112 GPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRS  191 (375)
T ss_pred             CcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccccccc
Confidence            99999999999999999997532                                                         


Q ss_pred             ----------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314          109 ----------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus       109 ----------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                                      ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++....   
T Consensus       192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~  268 (375)
T cd05104         192 GSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIRNDS  268 (375)
T ss_pred             ceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCchhhEEEECCCcEEEecCccceeccCcc
Confidence                            12478999999999999999999999   99999999999999999999999999986432   


Q ss_pred             ----------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          170 ----------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       170 ----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                +..|+|||.+....++.++|+||||+++|||++ |..||......   .....    ...++.     . 
T Consensus       269 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~---~~~~~----~~~~~~-----~-  335 (375)
T cd05104         269 NYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVD---SKFYK----MIKEGY-----R-  335 (375)
T ss_pred             cccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCch---HHHHH----HHHhCc-----c-
Confidence                      235999999998899999999999999999998 88888543111   11111    111110     0 


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+...+.++.+++.+||+.||++|||+.||+++|
T Consensus       336 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l  371 (375)
T cd05104         336 MLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLI  371 (375)
T ss_pred             CCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHH
Confidence            012233456899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-41  Score=287.72  Aligned_cols=249  Identities=18%  Similarity=0.183  Sum_probs=196.8

Q ss_pred             hhhhhHHHHhhhccccccCCCCCCCCcchhHH------HHHHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEE
Q 048314           12 IARSSLCTKLRNFCRSSLNDRNSPRSKSVWSC------MRALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVA   82 (274)
Q Consensus        12 ~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~   82 (274)
                      .+..+......+|.-...||.|.-  +.||.+      .++++|.++   ...+.+...+|+.+|+.++||||++.+..|
T Consensus        16 ~~~~~~p~n~~~YeL~e~IG~G~s--a~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sF   93 (516)
T KOG0582|consen   16 SSEKEFPLNAKDYELQEVIGVGAS--AVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSF   93 (516)
T ss_pred             cccccCCCCccceeEEEEEeccce--eEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEE
Confidence            344445566678888899999999  999998      222233222   112346678999999999999999999999


Q ss_pred             EeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           83 MRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        83 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                      ..+..+++||.||.+||+.+.++..-..++++..+..++++++.||.|||.+   |.||||+|+.|||++.+|.+||+||
T Consensus        94 vv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~---G~IHRdvKAgnILi~~dG~VkLadF  170 (516)
T KOG0582|consen   94 VVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQN---GHIHRDVKAGNILIDSDGTVKLADF  170 (516)
T ss_pred             EecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhc---CceecccccccEEEcCCCcEEEcCc
Confidence            9999999999999999999999987667799999999999999999999999   9999999999999999999999999


Q ss_pred             cccee---------------cCCCCcCCCccccc--CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH
Q 048314          163 GLAKL---------------LSDKGCMAPECYKR--TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK  225 (274)
Q Consensus       163 g~~~~---------------~~~~~~~ape~~~~--~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~  225 (274)
                      |.+..               .+++.|||||++..  ..|+.|+||||||++..|+++|..||...  ++...    .+..
T Consensus       171 gvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~--pPmkv----Ll~t  244 (516)
T KOG0582|consen  171 GVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKY--PPMKV----LLLT  244 (516)
T ss_pred             eeeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccC--ChHHH----HHHH
Confidence            87642               34788999999544  36899999999999999999999999743  22111    1111


Q ss_pred             HHhhhhhh--hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          226 CFINRELN--KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       226 ~~~~~~~~--~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       +.+....  ....+..........+.+++..||++||.+|||++++++
T Consensus       245 -Lqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  245 -LQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             -hcCCCCCcccccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence             1111110  011111344455678999999999999999999999985

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=2.2e-40  Score=278.89  Aligned_cols=233  Identities=15%  Similarity=0.174  Sum_probs=185.8

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-----HHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      .+|...+.+|.|+|  |.||++..     .++|... .....+.+.+|+.++++++||||+++++++.+.+..++||||+
T Consensus         4 ~~~~~~~~lg~G~~--~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~   81 (256)
T cd05114           4 SELTFMKELGSGQF--GVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFM   81 (256)
T ss_pred             HHcEEeeEecCCcC--ceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcC
Confidence            45666788999999  99998722     1122222 2223456889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++|+|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+....      
T Consensus        82 ~~~~L~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~  157 (256)
T cd05114          82 ENGCLLNYLRQ-RQGKLSKDMLLSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTS  157 (256)
T ss_pred             CCCcHHHHHHh-CccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcceEEEcCCCeEEECCCCCccccCCCceec
Confidence            99999999975 234689999999999999999999999   99999999999999999999999999886432      


Q ss_pred             ------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 ------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 ------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            ...|+|||.+....++.++|+||||+++|+|++ |+.||.....    ......    ...+.      ....+
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~----~~~~~~----i~~~~------~~~~~  223 (256)
T cd05114         158 SSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSN----YEVVEM----ISRGF------RLYRP  223 (256)
T ss_pred             cCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCH----HHHHHH----HHCCC------CCCCC
Confidence                  235999999988888999999999999999999 8889864311    111110    01100      01123


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+..+.+++.+||+.||++|||++++++.|
T Consensus       224 ~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         224 KLASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             CCCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence            33456789999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=1.4e-40  Score=281.29  Aligned_cols=234  Identities=16%  Similarity=0.173  Sum_probs=189.0

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      ++|...+.+|.|++  |.||+|.      ..++|... +....+.+.+|++++++++||||+++++++...+..+++|||
T Consensus         6 ~~~~~~~~ig~g~~--~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (263)
T cd05052           6 TDITMKHKLGGGQY--GEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF   83 (263)
T ss_pred             HHeEEeeecCCccc--ceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEe
Confidence            45777888999999  9999872      12222222 222335678999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      +++++|.+++.......+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++++|||.+....     
T Consensus        84 ~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~  160 (263)
T cd05052          84 MTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT  160 (263)
T ss_pred             CCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCcEEeCCCccccccccceee
Confidence            9999999999865556699999999999999999999999   99999999999999999999999999886543     


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +..|+|||.+....++.++||||||+++|||++ |..||.....  .  ...    .....     .. ....
T Consensus       161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~--~--~~~----~~~~~-----~~-~~~~  226 (263)
T cd05052         161 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL--S--QVY----ELLEK-----GY-RMER  226 (263)
T ss_pred             ccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH--H--HHH----HHHHC-----CC-CCCC
Confidence                   236999999988889999999999999999998 8888864311  1  110    11111     01 1124


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+.++.+++.+||+.||++|||+.+++++|
T Consensus       227 ~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l  259 (263)
T cd05052         227 PEGCPPKVYELMRACWQWNPSDRPSFAEIHQAF  259 (263)
T ss_pred             CCCCCHHHHHHHHHHccCCcccCCCHHHHHHHH
Confidence            445668899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=1.3e-40  Score=290.58  Aligned_cols=239  Identities=15%  Similarity=0.102  Sum_probs=196.8

Q ss_pred             hhhhHHHHhhhccccccCCCCCCCCcchhHH----------HHHHHH-HhcCCCCCCcHHHHHHHHhcCCCCccceEeEE
Q 048314           13 ARSSLCTKLRNFCRSSLNDRNSPRSKSVWSC----------MRALMA-TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSV   81 (274)
Q Consensus        13 ~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~----------~~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~   81 (274)
                      ...+.....++|.....||+|+|  |.||.+          ++..+| ..-.....+..+.|..+|....+|+||+|+-.
T Consensus       132 R~~R~r~~~~DFe~Lk~IgkGAf--GeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYs  209 (550)
T KOG0605|consen  132 RLRRTRLSLDDFELLKVIGKGAF--GEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYS  209 (550)
T ss_pred             HhccccCCcccchhheeeccccc--eeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEE
Confidence            33444455689999999999999  999988          333322 23333566777899999999999999999999


Q ss_pred             EEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 048314           82 AMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD  161 (274)
Q Consensus        82 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  161 (274)
                      |.+...+||||||.+||++..+|..  .+.|++.....++.+++.|+..+|+.   |+|||||||+|+|++..|++||+|
T Consensus       210 FQD~~~LYLiMEylPGGD~mTLL~~--~~~L~e~~arfYiaE~vlAI~~iH~~---gyIHRDIKPdNlLiD~~GHiKLSD  284 (550)
T KOG0605|consen  210 FQDKEYLYLIMEYLPGGDMMTLLMR--KDTLTEDWARFYIAETVLAIESIHQL---GYIHRDIKPDNLLIDAKGHIKLSD  284 (550)
T ss_pred             ecCCCeeEEEEEecCCccHHHHHHh--cCcCchHHHHHHHHHHHHHHHHHHHc---CcccccCChhheeecCCCCEeecc
Confidence            9999999999999999999999985  67899999999999999999999999   999999999999999999999999


Q ss_pred             cccceecC----------------------------------------------------------CCCcCCCcccccCC
Q 048314          162 FGLAKLLS----------------------------------------------------------DKGCMAPECYKRTP  183 (274)
Q Consensus       162 ~g~~~~~~----------------------------------------------------------~~~~~ape~~~~~~  183 (274)
                      ||++....                                                          ||.|+|||++.+..
T Consensus       285 FGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kg  364 (550)
T KOG0605|consen  285 FGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKG  364 (550)
T ss_pred             ccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCC
Confidence            99985311                                                          56699999999999


Q ss_pred             CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCC
Q 048314          184 ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL  263 (274)
Q Consensus       184 ~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~  263 (274)
                      |+..+|.||+||++|||+.|.+||...........+.+|.....         .|  .....+.+.++||.+|+. ||++
T Consensus       365 Y~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l~---------fP--~~~~~s~eA~DLI~rll~-d~~~  432 (550)
T KOG0605|consen  365 YGKECDWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETLK---------FP--EEVDLSDEAKDLITRLLC-DPEN  432 (550)
T ss_pred             CCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhcc---------CC--CcCcccHHHHHHHHHHhc-CHHH
Confidence            99999999999999999999999987644444455555543221         11  222334788999999999 9999


Q ss_pred             CCC---hhhH
Q 048314          264 RPS---MKCV  270 (274)
Q Consensus       264 Rps---~~ev  270 (274)
                      |--   +.||
T Consensus       433 RLG~~G~~EI  442 (550)
T KOG0605|consen  433 RLGSKGAEEI  442 (550)
T ss_pred             hcCcccHHHH
Confidence            964   5554

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.7e-40  Score=286.77  Aligned_cols=242  Identities=19%  Similarity=0.185  Sum_probs=184.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH----------------------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR----------------------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTD   75 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~----------------------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~ni   75 (274)
                      .++|...+.+|+|+|  |.||+|..                      .++|.....   ....++.+|+.++.+++||||
T Consensus         4 ~~~~~~~~~lg~G~f--g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni   81 (304)
T cd05096           4 RGHLLFKEKLGEGQF--GEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNI   81 (304)
T ss_pred             hhhCeeeeEecccCC--eEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCe
Confidence            356677788999999  99998731                      111222211   123457899999999999999


Q ss_pred             ceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCC-----------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 048314           76 IEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSA-----------------ERNPYWNQRVRIALDVAKGILYLHDECEPP  138 (274)
Q Consensus        76 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~-----------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~  138 (274)
                      +++++++.+.+..++||||+++|+|.+++....                 ...+++..+..++.|++.||.|||+.   +
T Consensus        82 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~  158 (304)
T cd05096          82 IRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL---N  158 (304)
T ss_pred             eEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC---C
Confidence            999999999999999999999999999996531                 12478899999999999999999999   9


Q ss_pred             cccCCCCCCceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh--c
Q 048314          139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC--C  203 (274)
Q Consensus       139 i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~--g  203 (274)
                      ++|+||||+||+++.++.+||+|||++....             +..|+|||++....++.++|+||||+++|+|++  +
T Consensus       159 ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~  238 (304)
T cd05096         159 FVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCK  238 (304)
T ss_pred             ccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccC
Confidence            9999999999999999999999999986432             346999999988889999999999999999987  4


Q ss_pred             CCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          204 WENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       204 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..||....  . . ............... .. .. ..+..++..+.+++.+||+.||++|||+.+|...|
T Consensus       239 ~~p~~~~~--~-~-~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l  302 (304)
T cd05096         239 EQPYGELT--D-E-QVIENAGEFFRDQGR-QV-YL-FRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFL  302 (304)
T ss_pred             CCCCCcCC--H-H-HHHHHHHHHhhhccc-cc-cc-cCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHH
Confidence            56665321  1 1 111111111111100 00 00 12334567899999999999999999999998765

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=7.5e-41  Score=297.09  Aligned_cols=236  Identities=19%  Similarity=0.196  Sum_probs=185.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRG   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~   85 (274)
                      .++|...+.+|+|+|  |.||++.           ..++|.....   ...+.+.+|+.+++.+ +|+|||+++++|.+.
T Consensus        37 ~~~~~~~~~LG~G~f--g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~  114 (374)
T cd05106          37 RDNLQFGKTLGAGAF--GKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHG  114 (374)
T ss_pred             HHHceehheecCCCc--ccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCC
Confidence            357888999999999  9999762           1223333222   1124567899999999 799999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCC---------------------------------------------------------
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSA---------------------------------------------------------  108 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~---------------------------------------------------------  108 (274)
                      +..++|||||++|+|.+++....                                                         
T Consensus       115 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (374)
T cd05106         115 GPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQS  194 (374)
T ss_pred             CCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccccc
Confidence            99999999999999999986421                                                         


Q ss_pred             -----------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--------
Q 048314          109 -----------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--------  169 (274)
Q Consensus       109 -----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--------  169 (274)
                                 ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++....        
T Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~  271 (374)
T cd05106         195 SDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASK---NCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVK  271 (374)
T ss_pred             ccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeec
Confidence                       12478899999999999999999999   99999999999999999999999999986432        


Q ss_pred             -----CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          170 -----DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       170 -----~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                           +..|+|||.+....++.++||||||+++|+|++ |+.||.......   ...    .....+     ... ..+.
T Consensus       272 ~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~---~~~----~~~~~~-----~~~-~~~~  338 (374)
T cd05106         272 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNS---KFY----KMVKRG-----YQM-SRPD  338 (374)
T ss_pred             cCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccH---HHH----HHHHcc-----cCc-cCCC
Confidence                 235999999988889999999999999999997 999996432111   010    000000     000 1222


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          244 KNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+.++.+++.+||+.||++|||+.+|+++|
T Consensus       339 ~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l  369 (374)
T cd05106         339 FAPPEIYSIMKMCWNLEPTERPTFSQISQLI  369 (374)
T ss_pred             CCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            3357899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-40  Score=270.08  Aligned_cols=221  Identities=19%  Similarity=0.179  Sum_probs=188.7

Q ss_pred             hhhccccccCCCCCCCCcchhHH----------HHHH-HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC----------MRAL-MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~----------~~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|.....+|.|+|  |+|..+          +++. +..+..-...+...+|..+|+.+.||.++++++.|.+.+..+
T Consensus        43 l~dfe~~~tlGtGSF--GrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~ly  120 (355)
T KOG0616|consen   43 LQDFERLKTLGTGSF--GRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLY  120 (355)
T ss_pred             hhhhhheeeeccCcc--ceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEE
Confidence            357788889999999  999876          3333 222333245566789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      |||||.+||.|..+++.  .+.++++..+.++.|++.||.|||+.   +|++|||||+|||++++|.+|++|||+++...
T Consensus       121 mvmeyv~GGElFS~Lrk--~~rF~e~~arFYAAeivlAleylH~~---~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~  195 (355)
T KOG0616|consen  121 MVMEYVPGGELFSYLRK--SGRFSEPHARFYAAEIVLALEYLHSL---DIIYRDLKPENLLLDQNGHIKITDFGFAKRVS  195 (355)
T ss_pred             EEEeccCCccHHHHHHh--cCCCCchhHHHHHHHHHHHHHHHHhc---CeeeccCChHHeeeccCCcEEEEeccceEEec
Confidence            99999999999999985  57899999999999999999999999   99999999999999999999999999997644


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-c
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-E  240 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  240 (274)
                              |+.|+|||.++..+++..+|.|+|||++|||+.|.+||.....    .            ....+++... .
T Consensus       196 ~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~----~------------~iY~KI~~~~v~  259 (355)
T KOG0616|consen  196 GRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP----I------------QIYEKILEGKVK  259 (355)
T ss_pred             CcEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh----H------------HHHHHHHhCccc
Confidence                    8999999999999999999999999999999999999975421    0            1122333333 4


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCC
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALR  264 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~R  264 (274)
                      +|...+.++.+|+...|+.|-.+|
T Consensus       260 fP~~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  260 FPSYFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             CCcccCHHHHHHHHHHHhhhhHhh
Confidence            677777889999999999998888

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=1.6e-41  Score=286.84  Aligned_cols=229  Identities=20%  Similarity=0.259  Sum_probs=179.1

Q ss_pred             cccCCCCCCCCcchhHHHHH----------HHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           27 SSLNDRNSPRSKSVWSCMRA----------LMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~~----------~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ...||.|.|  |.||+|...          +++.....   ...+.+.+|++.+++++||||++++|+|.+.+..++|+|
T Consensus         4 ~~~ig~G~f--g~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e   81 (259)
T PF07714_consen    4 IKQIGEGSF--GKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVME   81 (259)
T ss_dssp             EEEEEEESS--EEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE
T ss_pred             eeEEccCCC--cEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccc
Confidence            467999999  999997332          23333222   124678899999999999999999999998888999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++|+|.+++.......+++..+..++.|++.||.|||+.   +++|++|+++||+++.++.+||+|||++....    
T Consensus        82 ~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~  158 (259)
T PF07714_consen   82 YCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSN---NIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSK  158 (259)
T ss_dssp             --TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccc
Confidence            99999999999985467899999999999999999999999   99999999999999999999999999987762    


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               ...|+|||.+....++.++||||||+++||+++ |..||...   . ...+..   . ..+...      .
T Consensus       159 ~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~---~-~~~~~~---~-~~~~~~------~  224 (259)
T PF07714_consen  159 YKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY---D-NEEIIE---K-LKQGQR------L  224 (259)
T ss_dssp             EEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS---C-HHHHHH---H-HHTTEE------T
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc---c-cccccc---c-cccccc------c
Confidence                     346999999988889999999999999999999 67887533   1 111111   1 111111      1


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+..++..+.+++.+||+.||++|||+.++++.|
T Consensus       225 ~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  225 PIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             TSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             eeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence            23445678899999999999999999999999875

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=3e-40  Score=287.79  Aligned_cols=223  Identities=16%  Similarity=0.151  Sum_probs=180.6

Q ss_pred             ccCCCCCCCCcchhHHHH------HHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCC
Q 048314           28 SLNDRNSPRSKSVWSCMR------ALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      +++|+|+|  |.||++..      .++|.     .........+.+|+.++++++||||+++++++.+.+..++||||++
T Consensus         1 ~~lG~G~~--g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~   78 (323)
T cd05571           1 KLLGKGTF--GKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYAN   78 (323)
T ss_pred             CeeeeCCC--eEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCC
Confidence            36899999  99998711      11111     1112233456789999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------  168 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--------  168 (274)
                      +|+|.+++..  ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++..        
T Consensus        79 ~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~  153 (323)
T cd05571          79 GGELFFHLSR--ERVFSEDRARFYGAEIVSALGYLHSC---DVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMK  153 (323)
T ss_pred             CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCccc
Confidence            9999999975  45789999999999999999999999   9999999999999999999999999987642        


Q ss_pred             ---CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHH
Q 048314          169 ---SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKN  245 (274)
Q Consensus       169 ---~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (274)
                         +++.|+|||.+....++.++|+||+||++|||++|..||....   .. .+..    ....       .....+...
T Consensus       154 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~---~~-~~~~----~~~~-------~~~~~p~~~  218 (323)
T cd05571         154 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD---HE-KLFE----LILM-------EEIRFPRTL  218 (323)
T ss_pred             ceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCC---HH-HHHH----HHHc-------CCCCCCCCC
Confidence               3678999999998889999999999999999999999996431   11 1110    0000       111244556


Q ss_pred             HHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          246 LENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       246 ~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      +.++.+++.+||+.||++||     ++.++++
T Consensus       219 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         219 SPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             CHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence            67899999999999999999     7888875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=5e-40  Score=280.61  Aligned_cols=234  Identities=18%  Similarity=0.201  Sum_probs=187.7

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ++|.....+|.|++  |.||+|..           .++|.....   .....+.+|+.++++++||||+++++++.+...
T Consensus         5 ~~~~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~   82 (283)
T cd05048           5 SAVRFLEELGEGAF--GKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQP   82 (283)
T ss_pred             HHcchhhcccCccC--CcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCc
Confidence            56777889999999  99998721           112222211   112457789999999999999999999999889


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCC--------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC
Q 048314           88 PSTEAALDLPWDLAYIIFCSAE--------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE  153 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~--------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~  153 (274)
                      .+++|||+++|+|.+++.....              ..+++..+..++.|++.||.|||+.   +++|+||||+||++++
T Consensus        83 ~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nil~~~  159 (283)
T cd05048          83 TCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGE  159 (283)
T ss_pred             eEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccccceEEEcC
Confidence            9999999999999999976321              4588999999999999999999999   9999999999999999


Q ss_pred             CCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHH
Q 048314          154 FWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIIL  219 (274)
Q Consensus       154 ~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~  219 (274)
                      ++.++|+|||++....             +..|+|||.+....++.++|+||||+++|||++ |..||.....  .  .+
T Consensus       160 ~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~--~--~~  235 (283)
T cd05048         160 GLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSN--Q--EV  235 (283)
T ss_pred             CCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCH--H--HH
Confidence            9999999999986432             345999999988889999999999999999997 9999864311  1  11


Q ss_pred             HHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..    .+.++..      ...+..++.++.+++.+||+.||.+|||+.||+++|
T Consensus       236 ~~----~i~~~~~------~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l  280 (283)
T cd05048         236 IE----MIRSRQL------LPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRL  280 (283)
T ss_pred             HH----HHHcCCc------CCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            11    1111111      124456778999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=5e-40  Score=287.27  Aligned_cols=243  Identities=17%  Similarity=0.181  Sum_probs=186.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|...+.+|.|+|  |.||++..      .++|.....   ...+++.+|++++++++||||+++++++.+++..++|
T Consensus         4 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   81 (331)
T cd06649           4 DDDFERISELGAGNG--GVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC   81 (331)
T ss_pred             cccceEEEeecCCCC--EEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            367888899999999  99998721      122222211   1234578999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |||+++|+|.+++..  ...+++..+..++.|++.||.|||+.  .+++|+||||+||+++.++.++|+|||++...   
T Consensus        82 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  157 (331)
T cd06649          82 MEHMDGGSLDQVLKE--AKRIPEEILGKVSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  157 (331)
T ss_pred             eecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHhhc--CCEEcCCCChhhEEEcCCCcEEEccCccccccccc
Confidence            999999999999975  35689999999999999999999985  16999999999999999999999999988643   


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh-------------
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN-------------  229 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-------------  229 (274)
                            ++..|+|||.+.+..++.++|+|||||++|+|++|+.||.......    +..........             
T Consensus       158 ~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  233 (331)
T cd06649         158 MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKE----LEAIFGRPVVDGEEGEPHSISPRP  233 (331)
T ss_pred             ccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH----HHHHhcccccccccCCccccCccc
Confidence                  3668999999998889999999999999999999999996431110    10000000000             


Q ss_pred             ---------------------hhhhhhhc---CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          230 ---------------------RELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       230 ---------------------~~~~~~~~---~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                                           .....+..   +.......+.++.+++.+||+.||++|||+.|+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h  301 (331)
T cd06649         234 RPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNH  301 (331)
T ss_pred             ccccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence                                 00000000   101122346789999999999999999999999864

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=5.4e-40  Score=277.22  Aligned_cols=235  Identities=16%  Similarity=0.219  Sum_probs=188.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----HHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      .++|.....+|.|++  |.||++..     .++|... .....+.+.+|+.++++++|+||+++++.+.+.+..+++|||
T Consensus         5 ~~~~~~~~~lg~g~~--g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   82 (261)
T cd05072           5 RESIKLVKKLGAGQF--GEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEY   82 (261)
T ss_pred             hHHeEEeeecCCcCC--ceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEec
Confidence            356777888999999  99999832     1112111 222345678999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      +++++|.+++.......+++..++.++.|++.||+|||+.   +++|+||+|+||+++.++.++++|||++....     
T Consensus        83 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~  159 (261)
T cd05072          83 MAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYT  159 (261)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEecCCCcEEECCCccceecCCCcee
Confidence            9999999999875556789999999999999999999999   99999999999999999999999999987543     


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +..|+|||.+....++.++|+||||+++|+|++ |..||....   .. .....    ....     .. .+.
T Consensus       160 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~---~~-~~~~~----~~~~-----~~-~~~  225 (261)
T cd05072         160 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMS---NS-DVMSA----LQRG-----YR-MPR  225 (261)
T ss_pred             ccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCC---HH-HHHHH----HHcC-----CC-CCC
Confidence                   235999999988888999999999999999998 899985331   11 11111    0110     00 112


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+.++.+++.+||+.+|++|||++++.+.|
T Consensus       226 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  258 (261)
T cd05072         226 MENCPDELYDIMKTCWKEKAEERPTFDYLQSVL  258 (261)
T ss_pred             CCCCCHHHHHHHHHHccCCcccCcCHHHHHHHH
Confidence            234557889999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=5e-40  Score=287.11  Aligned_cols=230  Identities=16%  Similarity=0.102  Sum_probs=185.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|.....+|.|+|  |.||+|..      .++|.     .......+.+.+|+.++++++||||+++++++.+++..+
T Consensus        17 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   94 (329)
T PTZ00263         17 LSDFEMGETLGTGSF--GRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVY   94 (329)
T ss_pred             chheEEEEEEEecCC--eEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEE
Confidence            367788889999999  99998811      11111     112223456789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      +||||+++|+|.+++..  ...+++.....++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++... 
T Consensus        95 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~  169 (329)
T PTZ00263         95 FLLEFVVGGELFTHLRK--AGRFPNDVAKFYHAELVLAFEYLHSK---DIIYRDLKPENLLLDNKGHVKVTDFGFAKKVP  169 (329)
T ss_pred             EEEcCCCCChHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEECCCCCEEEeeccCceEcC
Confidence            99999999999999985  45789999999999999999999999   9999999999999999999999999998754 


Q ss_pred             -------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          169 -------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       169 -------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +++.|+|||.+....++.++|+|||||++|+|++|..||....  . . ...    .....+.       ...
T Consensus       170 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~--~-~-~~~----~~i~~~~-------~~~  234 (329)
T PTZ00263        170 DRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDT--P-F-RIY----EKILAGR-------LKF  234 (329)
T ss_pred             CCcceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCC--H-H-HHH----HHHhcCC-------cCC
Confidence                   3567999999998889999999999999999999999996431  1 0 000    0011110       023


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCC-----hhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPS-----MKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps-----~~evl~  272 (274)
                      +...+..+.+++.+||+.||.+||+     ++++++
T Consensus       235 p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  270 (329)
T PTZ00263        235 PNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKN  270 (329)
T ss_pred             CCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence            3344567899999999999999997     677764

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=9.8e-40  Score=275.73  Aligned_cols=235  Identities=20%  Similarity=0.239  Sum_probs=189.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----HHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      +++|...+.+|.|++  |.||+|..     .++|... .....+.+.+|+.++++++||||+++++++...+..+++|||
T Consensus         5 ~~~~~~~~~lg~g~~--~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   82 (261)
T cd05068           5 RTSIQLLRKLGAGQF--GEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTEL   82 (261)
T ss_pred             hhheeeEEEecccCC--ccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeec
Confidence            456777899999999  99998731     1122222 122345688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      +++++|.+++.......+++..+..++.|++.|+.+||+.   +++|+||+|+||+++.++.++|+|||++....     
T Consensus        83 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~  159 (261)
T cd05068          83 MKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYE  159 (261)
T ss_pred             ccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCcceEEEcCCCCEEECCcceEEEccCCccc
Confidence            9999999999864445699999999999999999999999   99999999999999999999999999987543     


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             ...|+|||.+....++.++|+||||+++++|++ |+.||....   .. .+..    .....     . ....
T Consensus       160 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~---~~-~~~~----~~~~~-----~-~~~~  225 (261)
T cd05068         160 AREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMT---NA-EVLQ----QVDQG-----Y-RMPC  225 (261)
T ss_pred             ccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC---HH-HHHH----HHHcC-----C-CCCC
Confidence                   125999999988889999999999999999999 898886431   11 1111    11000     0 0113


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+..+.+++.+||+.+|++||++.++++.|
T Consensus       226 ~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l  258 (261)
T cd05068         226 PPGCPKELYDIMLDCWKEDPDDRPTFETLQWKL  258 (261)
T ss_pred             CCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHH
Confidence            344567899999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=4e-41  Score=297.26  Aligned_cols=231  Identities=21%  Similarity=0.223  Sum_probs=185.8

Q ss_pred             cccCCCCCCCCcchhHH----HHHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCC
Q 048314           27 SSLNDRNSPRSKSVWSC----MRALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWD   99 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~----~~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs   99 (274)
                      ..-||.|.|  |+||+|    .+|+|....+.   ...+.|.+|+.++++-+|.||+-++|||..++. .+|+.+|.|.|
T Consensus       397 ~~rIGsGsF--GtV~Rg~whGdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~-AIiTqwCeGsS  473 (678)
T KOG0193|consen  397 GERIGSGSF--GTVYRGRWHGDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL-AIITQWCEGSS  473 (678)
T ss_pred             cceeccccc--cceeecccccceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce-eeeehhccCch
Confidence            455999999  999999    44443322221   345678899999999999999999999998887 99999999999


Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----------
Q 048314          100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----------  169 (274)
Q Consensus       100 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----------  169 (274)
                      |+.+++. .+..|...+..+|+.|+++|+.|||.+   +|||||||..||++.+++++||+|||++....          
T Consensus       474 LY~hlHv-~etkfdm~~~idIAqQiaqGM~YLHAK---~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~q  549 (678)
T KOG0193|consen  474 LYTHLHV-QETKFDMNTTIDIAQQIAQGMDYLHAK---NIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQ  549 (678)
T ss_pred             hhhhccc-hhhhhhHHHHHHHHHHHHHhhhhhhhh---hhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCC
Confidence            9999987 557799999999999999999999999   99999999999999999999999999986432          


Q ss_pred             ---CCCcCCCccccc---CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          170 ---DKGCMAPECYKR---TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       170 ---~~~~~ape~~~~---~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                         ...|||||++..   .+|+..+||||||+++|||++|..||...  ..+.+..   +   ...+.  -..|......
T Consensus       550 p~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~--~~dqIif---m---VGrG~--l~pd~s~~~s  619 (678)
T KOG0193|consen  550 PHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQ--NRDQIIF---M---VGRGY--LMPDLSKIRS  619 (678)
T ss_pred             CccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCC--ChhheEE---E---ecccc--cCccchhhhc
Confidence               345999999874   47899999999999999999999999722  1111110   0   00000  0001112445


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          244 KNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .++.++++|+..||..++++||++.+|+.+|
T Consensus       620 ~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l  650 (678)
T KOG0193|consen  620 NCPKAMKRLLSDCWKFDREERPLFPQLLSKL  650 (678)
T ss_pred             cCHHHHHHHHHHHHhcCcccCccHHHHHHHH
Confidence            6778999999999999999999999998854

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=4e-40  Score=286.02  Aligned_cols=232  Identities=17%  Similarity=0.197  Sum_probs=184.6

Q ss_pred             hhccccccCCCCCCCCcchhHHHH----------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR----------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      .+|...+.+|+|+|  |.||+|..          .++|.....   ...+++.+|+.+++.++||||++++|+|... ..
T Consensus         7 ~~f~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~   83 (316)
T cd05108           7 TEFKKIKVLGSGAF--GTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TV   83 (316)
T ss_pred             hhceeeeeeecCCC--ceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Cc
Confidence            57888999999999  99999821          122222211   2235677899999999999999999999765 57


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++++||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++..
T Consensus        84 ~~v~e~~~~g~l~~~l~~-~~~~~~~~~~~~~~~qi~~~L~~LH~~---~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~  159 (316)
T cd05108          84 QLITQLMPFGCLLDYVRE-HKDNIGSQYLLNWCVQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (316)
T ss_pred             eeeeecCCCCCHHHHHHh-ccccCCHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEecCCCcEEEccccccccc
Confidence            899999999999999986 345689999999999999999999999   9999999999999999999999999998754


Q ss_pred             C-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 S-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .             +..|++||.+....++.++||||||+++||+++ |..||....  ...  +..    .....    
T Consensus       160 ~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~--~~~--~~~----~~~~~----  227 (316)
T cd05108         160 GADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASE--ISS----ILEKG----  227 (316)
T ss_pred             cCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC--HHH--HHH----HHhCC----
Confidence            3             235999999988889999999999999999987 999986431  111  111    00110    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       .. ...+..++..+.+++.+||..||++|||+.+++..|
T Consensus       228 -~~-~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l  265 (316)
T cd05108         228 -ER-LPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEF  265 (316)
T ss_pred             -CC-CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence             00 012334556789999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-40  Score=284.44  Aligned_cols=228  Identities=16%  Similarity=0.077  Sum_probs=184.2

Q ss_pred             hccccccCCCCCCCCcchhHHHHH------HHHHh-----cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMRA------LMATV-----NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~~------~~~~~-----~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|...+.+|.|+|  |.||++...      ++|..     ......+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus         2 ~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   79 (291)
T cd05612           2 DLERIKTVGTGTF--GRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYML   79 (291)
T ss_pred             CceeeeeeecCCC--eEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEE
Confidence            5777889999999  999998211      11111     1112334577899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |||+++|+|.+++..  .+.+++.....++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...   
T Consensus        80 ~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~  154 (291)
T cd05612          80 MEYVPGGELFSYLRN--SGRFSNSTGLFYASEIVCALEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDR  154 (291)
T ss_pred             EeCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEEecCcchhccCC
Confidence            999999999999975  45789999999999999999999999   9999999999999999999999999998643   


Q ss_pred             -----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          169 -----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       169 -----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                           +++.|+|||.+....++.++|||||||++|+|++|..||.....   . ...    ......       ....+.
T Consensus       155 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~---~-~~~----~~i~~~-------~~~~~~  219 (291)
T cd05612         155 TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP---F-GIY----EKILAG-------KLEFPR  219 (291)
T ss_pred             cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH---H-HHH----HHHHhC-------CcCCCc
Confidence                 36679999999888889999999999999999999999964311   0 000    000111       112344


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCC-----hhhHHh
Q 048314          244 KNLENLVKVGLWCVQDEPALRPS-----MKCVVM  272 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps-----~~evl~  272 (274)
                      ..+..+.+++.+||+.||.+||+     +.++++
T Consensus       220 ~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  253 (291)
T cd05612         220 HLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKN  253 (291)
T ss_pred             cCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhc
Confidence            45678899999999999999995     888775

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.3e-40  Score=283.34  Aligned_cols=221  Identities=16%  Similarity=0.111  Sum_probs=178.2

Q ss_pred             CCCCCCCCcchhHHHH------HHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCC
Q 048314           30 NDRNSPRSKSVWSCMR------ALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPW   98 (274)
Q Consensus        30 ~g~g~~~~g~vy~~~~------~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g   98 (274)
                      +|+|+|  |.||++..      .++|.     .........+.+|+.++.+++||||+++++++.+.+..++||||+++|
T Consensus         1 lg~G~~--g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   78 (312)
T cd05585           1 IGKGSF--GKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGG   78 (312)
T ss_pred             CCcCCC--eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCC
Confidence            689999  99998821      11111     112233455778999999999999999999999999999999999999


Q ss_pred             CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----------
Q 048314           99 DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----------  168 (274)
Q Consensus        99 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----------  168 (274)
                      +|.+++..  ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||+++..          
T Consensus        79 ~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~  153 (312)
T cd05585          79 ELFHHLQR--EGRFDLSRARFYTAELLCALENLHKF---NVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTF  153 (312)
T ss_pred             cHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccc
Confidence            99999975  45799999999999999999999999   9999999999999999999999999988642          


Q ss_pred             -CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHH
Q 048314          169 -SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLE  247 (274)
Q Consensus       169 -~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (274)
                       +++.|+|||.+.+..++.++|||||||++|+|++|..||.....   .    ...... ..       .+...+...+.
T Consensus       154 ~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~---~----~~~~~~-~~-------~~~~~~~~~~~  218 (312)
T cd05585         154 CGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENV---N----EMYRKI-LQ-------EPLRFPDGFDR  218 (312)
T ss_pred             cCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCH---H----HHHHHH-Hc-------CCCCCCCcCCH
Confidence             36789999999988899999999999999999999999964311   1    000000 00       11134455667


Q ss_pred             HHHHHHHHhhccCCCCCCC---hhhHHh
Q 048314          248 NLVKVGLWCVQDEPALRPS---MKCVVM  272 (274)
Q Consensus       248 ~~~~li~~cl~~dp~~Rps---~~evl~  272 (274)
                      .+.+++.+||+.||++||+   +.|+++
T Consensus       219 ~~~~li~~~L~~dp~~R~~~~~~~e~l~  246 (312)
T cd05585         219 DAKDLLIGLLSRDPTRRLGYNGAQEIKN  246 (312)
T ss_pred             HHHHHHHHHcCCCHHHcCCCCCHHHHHc
Confidence            8999999999999999985   566654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-39  Score=274.90  Aligned_cols=233  Identities=16%  Similarity=0.170  Sum_probs=186.5

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-----HHHHHhcC-CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNS-PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      .+|...+.+|.|++  |.||++..     .++|.... ....+.+.+|++++++++||||+++++++.+.+..++||||+
T Consensus         4 ~~~~~~~~lg~G~~--~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05059           4 SELTFLKELGSGQF--GVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYM   81 (256)
T ss_pred             HHcchhhhhccCCC--ceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecC
Confidence            35667788999999  99998721     11222222 123456889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++++|.+++... ...+++..++.++.|++.||.|||+.   +++|+|+||+||+++.++.++++|||.++...      
T Consensus        82 ~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~  157 (256)
T cd05059          82 ANGCLLNYLRER-KGKLGTEWLLDMCSDVCEAMEYLESN---GFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTS  157 (256)
T ss_pred             CCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHhhEEECCCCcEEECCcccceecccccccc
Confidence            999999999763 34789999999999999999999999   99999999999999999999999999886432      


Q ss_pred             ------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 ------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 ------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            +..|+|||.+....++.++|+||||+++|++++ |..||.....   .. ...    .     ...... ...+
T Consensus       158 ~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~---~~-~~~----~-----~~~~~~-~~~~  223 (256)
T cd05059         158 SQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSN---SE-VVE----S-----VSAGYR-LYRP  223 (256)
T ss_pred             cCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCH---HH-HHH----H-----HHcCCc-CCCC
Confidence                  125999999988889999999999999999998 7888864311   10 000    0     000001 1233


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+..+.+++.+||+.+|++|||+.|+++.|
T Consensus       224 ~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         224 KLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence            44677899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.1e-39  Score=276.57  Aligned_cols=228  Identities=16%  Similarity=0.159  Sum_probs=185.2

Q ss_pred             hhccccccCCCCCCCCcchhHH-------HHHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      .+|.....+|+|.+  |+|-++       .++++.+.+++    ++.-...+||++|+.|+||||+.++.+|...+...+
T Consensus        53 HRyE~~etLGkGTY--GKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvi  130 (668)
T KOG0611|consen   53 HRYEITETLGKGTY--GKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVI  130 (668)
T ss_pred             hHHHHHHHhcCCcc--cceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEE
Confidence            45556677999999  988777       23333322222    222334699999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      ||||..+|.|+||+.+  .+.|++.+...+++||++|+.|+|.+   +++|||||.+|||++++.++||+|||++...  
T Consensus       131 vMEYaS~GeLYDYiSe--r~~LsErEaRhfFRQIvSAVhYCHkn---rVvHRDLKLENILLD~N~NiKIADFGLSNly~~  205 (668)
T KOG0611|consen  131 VMEYASGGELYDYISE--RGSLSEREARHFFRQIVSAVHYCHKN---RVVHRDLKLENILLDQNNNIKIADFGLSNLYAD  205 (668)
T ss_pred             EEEecCCccHHHHHHH--hccccHHHHHHHHHHHHHHHHHHhhc---cceecccchhheeecCCCCeeeeccchhhhhcc
Confidence            9999999999999986  56899999999999999999999999   9999999999999999999999999998643  


Q ss_pred             --------CCCCcCCCcccccCCCc-cccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 --------SDKGCMAPECYKRTPIS-VKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 --------~~~~~~ape~~~~~~~~-~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                              +++-|.+||++.+.+|. +.+|.||+|++||.|+.|..||+..+.    ..+.    ..+..+.+.+     
T Consensus       206 ~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dh----k~lv----rQIs~GaYrE-----  272 (668)
T KOG0611|consen  206 KKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDH----KRLV----RQISRGAYRE-----  272 (668)
T ss_pred             ccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchH----HHHH----HHhhcccccC-----
Confidence                    36789999999999885 789999999999999999999975521    1111    1122222221     


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         ...+....-||+|||-.||++|.|+.+|..
T Consensus       273 ---P~~PSdA~gLIRwmLmVNP~RRATieDiAs  302 (668)
T KOG0611|consen  273 ---PETPSDASGLIRWMLMVNPERRATIEDIAS  302 (668)
T ss_pred             ---CCCCchHHHHHHHHHhcCcccchhHHHHhh
Confidence               223345678999999999999999999875

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-39  Score=275.74  Aligned_cols=234  Identities=19%  Similarity=0.175  Sum_probs=188.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHHHH---------HHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMRA---------LMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~~---------~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      .++|.....+|.|+|  |.||+|...         ++|.....   ....+|.+|+.++++++||||+++++++.+.+..
T Consensus         3 ~~~~~~~~~lg~g~~--g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (266)
T cd05033           3 PSYVTIEKVIGGGEF--GEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPV   80 (266)
T ss_pred             hHHceeeeEecCCcc--ceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCce
Confidence            367888899999999  999988321         12222221   1234577899999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      +++|||+++++|.+++.. ..+.+++..+..++.|++.|+.|||+.   +++|+|++|+||+++.++.++++|||++...
T Consensus        81 ~iv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~  156 (266)
T cd05033          81 MIITEYMENGSLDKFLRE-NDGKFTVGQLVGMLRGIASGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRRL  156 (266)
T ss_pred             EEEEEcCCCCCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCCEEECccchhhcc
Confidence            999999999999999976 345789999999999999999999999   9999999999999999999999999998764


Q ss_pred             C-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 S-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .             +..|+|||.+....++.++|+||||+++|++++ |..||....    ...+.    ......    
T Consensus       157 ~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~----~~~~~----~~~~~~----  224 (266)
T cd05033         157 EDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMS----NQDVI----KAVEDG----  224 (266)
T ss_pred             cccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCC----HHHHH----HHHHcC----
Confidence            3             245999999988889999999999999999987 999985321    01111    111110    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .  ..+.+...+..+.+++.+||+.+|++|||+.||++.|
T Consensus       225 ~--~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l  262 (266)
T cd05033         225 Y--RLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTL  262 (266)
T ss_pred             C--CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            0  1123345567899999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=5e-39  Score=271.19  Aligned_cols=224  Identities=16%  Similarity=0.226  Sum_probs=176.4

Q ss_pred             cCCCCCCCCcchhHHHH-------------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           29 LNDRNSPRSKSVWSCMR-------------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~-------------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .+|.|+|  |.||+|..             .++|.....  ...+.+.+|+.+++.++||||+++++++..++..++|||
T Consensus         2 ~lg~G~~--~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   79 (258)
T cd05078           2 SLGQGTF--TKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQE   79 (258)
T ss_pred             CCCcccc--hhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEe
Confidence            5899999  99999832             233333221  223567889999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc--------EEEeccccc
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT--------AKISDFGLA  165 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~--------~kl~d~g~~  165 (274)
                      |+++|+|.+++.. ....+++..+..++.|++.||.|||+.   +++||||||+||+++.++.        ++++|||.+
T Consensus        80 ~~~~g~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~  155 (258)
T cd05078          80 YVKFGSLDTYLKK-NKNLINISWKLEVAKQLAWALHFLEDK---GLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGIS  155 (258)
T ss_pred             cCCCCcHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEecccccccCCCceEEecccccc
Confidence            9999999999986 334689999999999999999999999   9999999999999977654        699999987


Q ss_pred             eec-------CCCCcCCCcccccC-CCccccceeehhHhHHHHhhcC-CCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          166 KLL-------SDKGCMAPECYKRT-PISVKADVYGYGIVLLETICCW-ENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       166 ~~~-------~~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      ...       .+..|+|||.+... .++.++|+||||+++|+|++|. .|+... .....   ..    . ..       
T Consensus       156 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~-~~~~~---~~----~-~~-------  219 (258)
T cd05078         156 ITVLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSAL-DSQKK---LQ----F-YE-------  219 (258)
T ss_pred             cccCCchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhc-cHHHH---HH----H-HH-------
Confidence            543       25679999998864 5788999999999999999995 555322 11100   00    0 00       


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .....+.....++.+++.+||+.||++|||++++++.|
T Consensus       220 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l  257 (258)
T cd05078         220 DRHQLPAPKWTELANLINQCMDYEPDFRPSFRAIIRDL  257 (258)
T ss_pred             ccccCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence            01123333446789999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1e-39  Score=286.31  Aligned_cols=231  Identities=15%  Similarity=0.087  Sum_probs=186.7

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH-------HHHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM-------RALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ..++|.....+|.|+|  |.||++.       ..++|.     .......+.+.+|+.+++.++||||+++++++.+.+.
T Consensus        28 ~~~~y~~~~~ig~G~~--g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~  105 (340)
T PTZ00426         28 KYEDFNFIRTLGTGSF--GRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESY  105 (340)
T ss_pred             ChhhcEEEEEEeecCC--eEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCE
Confidence            4567888899999999  9999882       111111     1112234457789999999999999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++|+|.+++..  ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++..
T Consensus       106 ~~lv~Ey~~~g~L~~~i~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~ikL~DFG~a~~  180 (340)
T PTZ00426        106 LYLVLEFVIGGEFFTFLRR--NKRFPNDVGCFYAAQIVLIFEYLQSL---NIVYRDLKPENLLLDKDGFIKMTDFGFAKV  180 (340)
T ss_pred             EEEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEecCCCCee
Confidence            9999999999999999975  45799999999999999999999999   999999999999999999999999999875


Q ss_pred             c--------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          168 L--------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       168 ~--------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                      .        +++.|+|||++....++.++|+|||||++|||++|..||.....   . ...    .....+.       .
T Consensus       181 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~---~-~~~----~~i~~~~-------~  245 (340)
T PTZ00426        181 VDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEP---L-LIY----QKILEGI-------I  245 (340)
T ss_pred             cCCCcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCH---H-HHH----HHHhcCC-------C
Confidence            3        35679999999888889999999999999999999999964311   1 000    0011110       1


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      ..|...+..+.+++.+||+.||++|+     |+.++++
T Consensus       246 ~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~  283 (340)
T PTZ00426        246 YFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKE  283 (340)
T ss_pred             CCCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHc
Confidence            23444556789999999999999995     8998875

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=8.7e-40  Score=279.75  Aligned_cols=244  Identities=16%  Similarity=0.109  Sum_probs=182.7

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ++|...+.+|.|+|  |.||++..      .++|....    ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus         1 ~~y~~~~~lg~g~~--~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   78 (287)
T cd07848           1 NKFEVLGVVGEGAY--GVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLV   78 (287)
T ss_pred             CCceEEEEecccCC--EEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEE
Confidence            35777888999999  99998821      12222221    12345577999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |||++++++..+..  ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||++...   
T Consensus        79 ~e~~~~~~l~~~~~--~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  153 (287)
T cd07848          79 FEYVEKNMLELLEE--MPNGVPPEKVRSYIYQLIKAIHWCHKN---DIVHRDIKPENLLISHNDVLKLCDFGFARNLSEG  153 (287)
T ss_pred             EecCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccCccccccc
Confidence            99999877765543  245699999999999999999999999   9999999999999999999999999998643   


Q ss_pred             ---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH-------HHH-Hhhhh
Q 048314          169 ---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV-------YKC-FINRE  231 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~-------~~~-~~~~~  231 (274)
                               ++..|+|||.+.+..++.++|+|||||++|+|++|+.||................       ... ..+..
T Consensus       154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (287)
T cd07848         154 SNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPR  233 (287)
T ss_pred             ccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccch
Confidence                     2567999999988889999999999999999999999997532111100000000       000 00000


Q ss_pred             hhhhhcCC---------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          232 LNKLVRGT---------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       232 ~~~~~~~~---------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ......+.         ......+..+.+++.+||+.||++|||++|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         234 FHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             hcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            00000000         011124567999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.6e-39  Score=276.77  Aligned_cols=196  Identities=22%  Similarity=0.281  Sum_probs=158.4

Q ss_pred             cHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 048314           59 RPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP  138 (274)
Q Consensus        59 ~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~  138 (274)
                      .+.+|+.++++++||||++++++|.+.+..++||||+++|+|.+++.. ..+.+++..+..++.|++.||.|||+.   +
T Consensus        62 ~~~~~~~~~~~l~h~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~  137 (274)
T cd05076          62 AFFETASLMSQVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRK-EKGRVPVAWKITVAQQLASALSYLEDK---N  137 (274)
T ss_pred             HHHHHHHHHhcCCCCCeeeEEEEEEeCCceEEEEecCCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHcC---C
Confidence            467889999999999999999999999999999999999999999975 345789999999999999999999999   9


Q ss_pred             cccCCCCCCceEEcCCC-------cEEEeccccceec-------CCCCcCCCccccc-CCCccccceeehhHhHHHHh-h
Q 048314          139 ILHCDIKPQNILMDEFW-------TAKISDFGLAKLL-------SDKGCMAPECYKR-TPISVKADVYGYGIVLLETI-C  202 (274)
Q Consensus       139 i~h~dl~~~nil~~~~~-------~~kl~d~g~~~~~-------~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~-~  202 (274)
                      ++||||||+||+++..+       .++++|||.+...       .+..|+|||.+.. ..++.++|+||||+++||++ +
T Consensus       138 iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~  217 (274)
T cd05076         138 LVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFD  217 (274)
T ss_pred             ccCCCCCcccEEEeccCcccCccceeeecCCccccccccccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            99999999999997543       4799999987532       2567999998865 46789999999999999984 6


Q ss_pred             cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          203 CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       203 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      |..||.... +..   ....    ...        ....+......+.+++.+||+.+|++|||+.+|++.|
T Consensus       218 g~~p~~~~~-~~~---~~~~----~~~--------~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         218 GEVPLKERT-PSE---KERF----YEK--------KHRLPEPSCKELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             CCCCccccC-hHH---HHHH----HHh--------ccCCCCCCChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence            888886431 111   0000    000        0012222335789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=2e-39  Score=276.34  Aligned_cols=235  Identities=17%  Similarity=0.204  Sum_probs=188.5

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      .++|.....+|.|++  |.||+|..           .++|......   ..+.+.+|++++++++||||+++++++....
T Consensus         4 ~~~~~~~~~lg~g~~--~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   81 (280)
T cd05049           4 RDTIVLKRELGEGAF--GKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGD   81 (280)
T ss_pred             hHHhhHHhhccccCC--ceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCC
Confidence            456777889999999  99999832           1122222221   2356789999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCC------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC
Q 048314           87 KPSTEAALDLPWDLAYIIFCSA------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  154 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  154 (274)
                      ..++||||+++++|.+++....            ...+++..+..++.|++.|+.|||+.   +++|+||||+||+++.+
T Consensus        82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~  158 (280)
T cd05049          82 PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ---HFVHRDLATRNCLVGYD  158 (280)
T ss_pred             CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeeccccccceEEEcCC
Confidence            9999999999999999997532            23488999999999999999999999   99999999999999999


Q ss_pred             CcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHH
Q 048314          155 WTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILT  220 (274)
Q Consensus       155 ~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~  220 (274)
                      +.++|+|||.+....             +..|+|||.+....++.++||||||+++|+|++ |..||.....   . ...
T Consensus       159 ~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~---~-~~~  234 (280)
T cd05049         159 LVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSN---E-EVI  234 (280)
T ss_pred             CeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCH---H-HHH
Confidence            999999999886431             245999999998889999999999999999998 9999864311   1 111


Q ss_pred             HHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          221 NWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .    ....+.      ....+...+..+.+++.+||+.||++|||+.|++++|
T Consensus       235 ~----~~~~~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l  278 (280)
T cd05049         235 E----CITQGR------LLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERL  278 (280)
T ss_pred             H----HHHcCC------cCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHh
Confidence            1    111111      1123345567899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=7.9e-40  Score=285.18  Aligned_cols=233  Identities=18%  Similarity=0.157  Sum_probs=192.4

Q ss_pred             hhccccccCCCCCCCCcchhHHH-------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc-ceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM-------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK-PST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~-------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~-~~l   90 (274)
                      .+|.....+|+|.|  |.++.+.       .++|++.-..   ..++...+|+.++++++|||||.+.+.|.+++. .+|
T Consensus         4 ~~Ye~~~~iG~Gaf--G~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~I   81 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAF--GSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCI   81 (426)
T ss_pred             chhhhhhhcCcccc--chhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEE
Confidence            45556788999999  7766662       2222221111   123345799999999999999999999999888 999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ||+||.||++.+.+...++..++++.+..++.|++.|+.|||++   .|+|||||+.||++..+..++|+|||+++... 
T Consensus        82 vm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~---~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~  158 (426)
T KOG0589|consen   82 VMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHEN---RVLHRDLKCANIFLTKDKKVKLGDFGLAKILNP  158 (426)
T ss_pred             EEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhh---hhhcccchhhhhhccccCceeecchhhhhhcCC
Confidence            99999999999999986667799999999999999999999998   99999999999999999999999999997654 


Q ss_pred             ----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 ----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 ----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                                |+.|++||++.+.+|..|+|||||||++|||.+=+++|...+...       .     ..........  
T Consensus       159 ~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~-------L-----i~ki~~~~~~--  224 (426)
T KOG0589|consen  159 EDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSE-------L-----ILKINRGLYS--  224 (426)
T ss_pred             chhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHH-------H-----HHHHhhccCC--
Confidence                      788999999999999999999999999999999999997542211       1     1111111122  


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      +.|...+.++..++..||..+|+.|||+.+++.+
T Consensus       225 Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  225 PLPSMYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             CCCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence            4788889999999999999999999999999864

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=1.4e-39  Score=279.33  Aligned_cols=235  Identities=17%  Similarity=0.227  Sum_probs=186.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      .++|...+.+|.|++  |.||.|..           .+++.....  ...+.+.+|+.++++++||||+++++++.+.+.
T Consensus         4 ~~~~~~~~~lg~g~~--g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   81 (291)
T cd05094           4 RRDIVLKRELGEGAF--GKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDP   81 (291)
T ss_pred             hHHeEEeeeecccCC--CeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCc
Confidence            356777889999999  99998731           111122111  112457799999999999999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC
Q 048314           88 PSTEAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE  153 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~  153 (274)
                      .++||||+++++|.+++....              ...+++..++.++.|++.||.|||++   +++|+||||+||+++.
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nil~~~  158 (291)
T cd05094          82 LIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGA  158 (291)
T ss_pred             eEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEcc
Confidence            999999999999999997532              23489999999999999999999999   9999999999999999


Q ss_pred             CCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHH
Q 048314          154 FWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIIL  219 (274)
Q Consensus       154 ~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~  219 (274)
                      ++.++++|||++....             +..|+|||.+....++.++|+||||+++|+|++ |..||..... .   ..
T Consensus       159 ~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-~---~~  234 (291)
T cd05094         159 NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSN-T---EV  234 (291)
T ss_pred             CCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH-H---HH
Confidence            9999999999985432             345999999988888999999999999999998 9999854311 0   01


Q ss_pred             HHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .    .....+...      ..+...+..+.+++.+||+.||++|||+.+|+++|
T Consensus       235 ~----~~~~~~~~~------~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l  279 (291)
T cd05094         235 I----ECITQGRVL------ERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKIL  279 (291)
T ss_pred             H----HHHhCCCCC------CCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHH
Confidence            1    111111111      12334567899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=1e-39  Score=291.73  Aligned_cols=236  Identities=16%  Similarity=0.192  Sum_probs=186.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC---CCCCcHHHHHHHHhcCC-CCccceEeEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP---YSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRG   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~---~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~   85 (274)
                      .+.|....+||.|+|  |.||+|..           .++|.+...   ...+.+.+|+++++++. ||||++++++|.+.
T Consensus        36 ~~~~~~~~~LG~G~f--G~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~  113 (400)
T cd05105          36 RDGLVLGRILGSGAF--GKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS  113 (400)
T ss_pred             ccceehhheecCCCC--ceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC
Confidence            456677889999999  99998731           122222221   22345789999999996 99999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCC---------------------------------------------------------
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSA---------------------------------------------------------  108 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~---------------------------------------------------------  108 (274)
                      +..++|||||++|+|.+++....                                                         
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (400)
T cd05105         114 GPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLE  193 (400)
T ss_pred             CceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhh
Confidence            99999999999999999987531                                                         


Q ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 048314          109 -------------------------------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM  151 (274)
Q Consensus       109 -------------------------------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~  151 (274)
                                                           ...+++..++.++.|++.||.|||+.   +++|+||||+||++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dikp~Nill  270 (400)
T cd05105         194 IKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASK---NCVHRDLAARNVLL  270 (400)
T ss_pred             hhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHhEEE
Confidence                                                 12478889999999999999999999   99999999999999


Q ss_pred             cCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhH
Q 048314          152 DEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEI  217 (274)
Q Consensus       152 ~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~  217 (274)
                      +.++.+|++|||++....             +..|+|||.+....++.++||||||+++|+|++ |..||.......   
T Consensus       271 ~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~---  347 (400)
T cd05105         271 AQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDS---  347 (400)
T ss_pred             eCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhH---
Confidence            999999999999986432             246999999988889999999999999999997 888886331110   


Q ss_pred             HHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          218 ILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+    ......+     .. ...+...+..+.+++.+||+.||++|||+.+|.+.|
T Consensus       348 ~~----~~~~~~~-----~~-~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l  394 (400)
T cd05105         348 TF----YNKIKSG-----YR-MAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIV  394 (400)
T ss_pred             HH----HHHHhcC-----CC-CCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHH
Confidence            00    0111111     00 123445667899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=2.2e-39  Score=282.91  Aligned_cols=222  Identities=17%  Similarity=0.149  Sum_probs=179.6

Q ss_pred             cCCCCCCCCcchhHHH------HHHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCC
Q 048314           29 LNDRNSPRSKSVWSCM------RALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLP   97 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~------~~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~   97 (274)
                      .+|+|+|  |.||++.      ..++|.     .........+.+|+.+++.++||||+++++++.+.+..++||||+++
T Consensus         2 ~lG~G~~--g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~   79 (328)
T cd05593           2 LLGKGTF--GKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNG   79 (328)
T ss_pred             eeeeCCC--EEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCC
Confidence            5899999  9999871      111111     11222345677899999999999999999999999999999999999


Q ss_pred             CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---------
Q 048314           98 WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---------  168 (274)
Q Consensus        98 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---------  168 (274)
                      |+|.+++..  ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++..         
T Consensus        80 g~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~  154 (328)
T cd05593          80 GELFFHLSR--ERVFSEDRTRFYGAEIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKT  154 (328)
T ss_pred             CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeEECCCCcEEEecCcCCccCCCccccccc
Confidence            999999875  45799999999999999999999999   9999999999999999999999999987642         


Q ss_pred             --CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHH
Q 048314          169 --SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNL  246 (274)
Q Consensus       169 --~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (274)
                        +++.|+|||.+....++.++|||||||++|+|++|..||.....   . ....    ....       .....+...+
T Consensus       155 ~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~---~-~~~~----~~~~-------~~~~~p~~~~  219 (328)
T cd05593         155 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---E-KLFE----LILM-------EDIKFPRTLS  219 (328)
T ss_pred             ccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCH---H-HHHH----Hhcc-------CCccCCCCCC
Confidence              35789999999888899999999999999999999999964311   1 0000    0000       1112444556


Q ss_pred             HHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          247 ENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       247 ~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      .++.+++.+||+.||++||     ++.|+++
T Consensus       220 ~~~~~li~~~L~~dP~~R~~~~~~~~~~il~  250 (328)
T cd05593         220 ADAKSLLSGLLIKDPNKRLGGGPDDAKEIMR  250 (328)
T ss_pred             HHHHHHHHHHcCCCHHHcCCCCCCCHHHHhc
Confidence            7889999999999999997     8888875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=2.4e-39  Score=272.92  Aligned_cols=233  Identities=15%  Similarity=0.153  Sum_probs=185.2

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-----HHHHHhcC-CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNS-PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      ++|.....+|.|++  |.||.+..     .++|.... ....+.+.+|+.++++++||||+++++++.+.+..+++|||+
T Consensus         4 ~~~~~~~~lg~G~~--~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05113           4 KDLTFLKELGTGQF--GVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYM   81 (256)
T ss_pred             HHeEEeeEecCccc--ceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcC
Confidence            45666778999999  99998821     11222222 223456889999999999999999999999888899999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      .+|+|.+++... ...+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.+|++|||.++...      
T Consensus        82 ~~~~l~~~i~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~  157 (256)
T cd05113          82 SNGCLLNYLREH-GKRFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTS  157 (256)
T ss_pred             CCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCCEEECCCccceecCCCceee
Confidence            999999999763 34689999999999999999999999   99999999999999999999999999886432      


Q ss_pred             ------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 ------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 ------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            +..|++||.+....++.++|+||||+++|+|++ |..||.....   . ....    ...+...      ...+
T Consensus       158 ~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~---~-~~~~----~~~~~~~------~~~~  223 (256)
T cd05113         158 SVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNN---S-ETVE----KVSQGLR------LYRP  223 (256)
T ss_pred             cCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCH---H-HHHH----HHhcCCC------CCCC
Confidence                  235999999988888999999999999999998 8999853311   0 0100    0111100      0122


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+..+.+++.+||+.||++|||+.+|++.|
T Consensus       224 ~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~  255 (256)
T cd05113         224 HLASEKVYAIMYSCWHEKAEERPTFQQLLSSI  255 (256)
T ss_pred             CCCCHHHHHHHHHHcCCCcccCCCHHHHHHhh
Confidence            33467899999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=2e-39  Score=272.30  Aligned_cols=226  Identities=18%  Similarity=0.179  Sum_probs=180.6

Q ss_pred             cCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCC
Q 048314           29 LNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWD   99 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs   99 (274)
                      .+|.|+|  |.||++..      .++|.....   .....+.+|++++++++||||+++++++.+....++||||+++++
T Consensus         2 ~lg~g~~--g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (252)
T cd05084           2 RIGRGNF--GEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGD   79 (252)
T ss_pred             ccCcccC--ccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCc
Confidence            5899999  99998722      122222211   123457899999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----------
Q 048314          100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----------  169 (274)
Q Consensus       100 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----------  169 (274)
                      |.+++.. ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+....          
T Consensus        80 L~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  155 (252)
T cd05084          80 FLTFLRT-EGPRLKVKELIQMVENAAAGMEYLESK---HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGM  155 (252)
T ss_pred             HHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEEcCCCcEEECccccCcccccccccccCCC
Confidence            9999975 345689999999999999999999999   99999999999999999999999999976432          


Q ss_pred             ---CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHH
Q 048314          170 ---DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKN  245 (274)
Q Consensus       170 ---~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (274)
                         ...|+|||.+....++.++|+||||+++|++++ |..||.....   . ...    ....     .. .+...+...
T Consensus       156 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~---~-~~~----~~~~-----~~-~~~~~~~~~  221 (252)
T cd05084         156 KQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSN---Q-QTR----EAIE-----QG-VRLPCPELC  221 (252)
T ss_pred             CCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCH---H-HHH----HHHH-----cC-CCCCCcccC
Confidence               134999999988889999999999999999997 8888853211   0 000    0000     00 111234455


Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          246 LENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       246 ~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +..+.+++.+||+.||++|||+.+|+++|
T Consensus       222 ~~~~~~li~~~l~~~p~~Rps~~~~~~~l  250 (252)
T cd05084         222 PDAVYRLMERCWEYDPGQRPSFSTVHQEL  250 (252)
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            67899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=1.4e-39  Score=283.53  Aligned_cols=223  Identities=17%  Similarity=0.156  Sum_probs=179.3

Q ss_pred             ccCCCCCCCCcchhHHHH------HHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCC
Q 048314           28 SLNDRNSPRSKSVWSCMR------ALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      +.+|+|+|  |.||++..      .++|.     .........+.+|+.++++++||||+++++++.+.+..++||||++
T Consensus         1 ~~lG~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~   78 (323)
T cd05595           1 KLLGKGTF--GKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYAN   78 (323)
T ss_pred             CeeeeCCC--EEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCC
Confidence            36899999  99998711      11111     1122233456789999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------  168 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--------  168 (274)
                      +|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...        
T Consensus        79 ~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~  153 (323)
T cd05595          79 GGELFFHLSR--ERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMK  153 (323)
T ss_pred             CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccc
Confidence            9999999875  45789999999999999999999999   9999999999999999999999999987542        


Q ss_pred             ---CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHH
Q 048314          169 ---SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKN  245 (274)
Q Consensus       169 ---~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (274)
                         +++.|+|||.+....++.++|+|||||++|+|++|..||.....   .. ...    ....       .....+...
T Consensus       154 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~---~~-~~~----~~~~-------~~~~~p~~~  218 (323)
T cd05595         154 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---ER-LFE----LILM-------EEIRFPRTL  218 (323)
T ss_pred             cccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCH---HH-HHH----HHhc-------CCCCCCCCC
Confidence               35689999999888899999999999999999999999964311   10 000    0000       011234455


Q ss_pred             HHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          246 LENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       246 ~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      +..+.+++.+||+.||++||     ++.++++
T Consensus       219 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         219 SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             CHHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence            67889999999999999998     7888765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-39  Score=282.11  Aligned_cols=234  Identities=15%  Similarity=0.126  Sum_probs=185.5

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|.....+|.|+|  |.||++..      .++|.     .......+.+.+|+.++.+++||||+++++++.+.+..++|
T Consensus         2 ~y~~~~~ig~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv   79 (333)
T cd05600           2 DFQILTQVGQGGY--GQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLA   79 (333)
T ss_pred             CcEEEEEEeecCC--eEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEE
Confidence            5777888999999  99998821      11111     11112334577899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |||+++|+|.+++..  ...+++.....++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...   
T Consensus        80 ~e~~~g~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~  154 (333)
T cd05600          80 MEYVPGGDFRTLLNN--LGVLSEDHARFYMAEMFEAVDALHEL---GYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTY  154 (333)
T ss_pred             EeCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEEEeCcCCcccccc
Confidence            999999999999975  45789999999999999999999999   9999999999999999999999999998643   


Q ss_pred             -----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc-CC--c
Q 048314          169 -----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR-GT--E  240 (274)
Q Consensus       169 -----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~  240 (274)
                           +++.|+|||++....++.++|||||||++|||++|..||...........+..+          ..... +.  .
T Consensus       155 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~----------~~~~~~~~~~~  224 (333)
T cd05600         155 ANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYW----------KETLQRPVYDD  224 (333)
T ss_pred             cCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhc----------cccccCCCCCc
Confidence                 367899999999888999999999999999999999999643111100001000          00000 10  0


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .....+.++.+++.+||..+|.+|||+.++++.
T Consensus       225 ~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         225 PRFNLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             cccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            112346788999999999999999999999863

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=2.8e-39  Score=277.19  Aligned_cols=246  Identities=17%  Similarity=0.166  Sum_probs=183.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|...+.+|.|+|  |.||+|.      ..++|.+..   ......+.+|+.++++++||||+++++++.+.+..++|
T Consensus         4 ~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv   81 (288)
T cd07871           4 LETYVKLDKLGEGTY--ATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLV   81 (288)
T ss_pred             cccceEeeEEecCCC--EEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEE
Confidence            356777889999999  9999981      112222221   12344577999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |||++ |+|.+++.. ....+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++....  
T Consensus        82 ~e~~~-~~l~~~l~~-~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~  156 (288)
T cd07871          82 FEYLD-SDLKQYLDN-CGNLMSMHNVKIFMFQLLRGLSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLARAKSVP  156 (288)
T ss_pred             EeCCC-cCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEECcCcceeeccCC
Confidence            99997 499999875 344689999999999999999999999   99999999999999999999999999986432  


Q ss_pred             ---------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH-------HHHH-hhhh
Q 048314          170 ---------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV-------YKCF-INRE  231 (274)
Q Consensus       170 ---------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~-------~~~~-~~~~  231 (274)
                               +..|+|||.+.+ ..++.++|+||+||++|+|++|+.||................       ++.. ....
T Consensus       157 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (288)
T cd07871         157 TKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEE  236 (288)
T ss_pred             CccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchh
Confidence                     456999998865 468899999999999999999999996542111100000000       0000 0000


Q ss_pred             hhhhhcCC-------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          232 LNKLVRGT-------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       232 ~~~~~~~~-------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ......+.       ........++.+++.+||+.||.+|||++|+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~h  285 (288)
T cd07871         237 FRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALRH  285 (288)
T ss_pred             hhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence            00111110       0011234678899999999999999999999863

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=2.3e-39  Score=278.77  Aligned_cols=234  Identities=18%  Similarity=0.196  Sum_probs=184.3

Q ss_pred             hhccccccCCCCCCCCcchhHHHH--------HHHHHhcC---CCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcce
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR--------ALMATVNS---PYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~--------~~~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~   89 (274)
                      ++|....++|.|+|  |.||+|..        +.++....   ....+.+.+|+.+++++ +||||+++++++.+.+..+
T Consensus         2 ~~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~   79 (297)
T cd05089           2 EDIKFEDVIGEGNF--GQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLY   79 (297)
T ss_pred             ccceeeeeecCCCc--ceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcce
Confidence            46777889999999  99998821        11111211   11234578899999999 6999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 048314           90 TEAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW  155 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~  155 (274)
                      +++||+++++|.+++....              ...+++..+..++.|++.||.|||+.   +++|+||||+||+++.++
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~  156 (297)
T cd05089          80 IAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENL  156 (297)
T ss_pred             EEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCcCCcceEEECCCC
Confidence            9999999999999997532              13489999999999999999999999   999999999999999999


Q ss_pred             cEEEeccccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHH
Q 048314          156 TAKISDFGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVY  224 (274)
Q Consensus       156 ~~kl~d~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~  224 (274)
                      .+||+|||++....          ...|+|||.+....++.++||||||+++|||++ |..||.....   . .+.    
T Consensus       157 ~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~---~-~~~----  228 (297)
T cd05089         157 ASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTC---A-ELY----  228 (297)
T ss_pred             eEEECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH---H-HHH----
Confidence            99999999875321          235999999988889999999999999999997 9999864311   0 010    


Q ss_pred             HHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          225 KCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .....    . .. ...+...+..+.+++.+||+.||.+|||++++++.|
T Consensus       229 ~~~~~----~-~~-~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  272 (297)
T cd05089         229 EKLPQ----G-YR-MEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQL  272 (297)
T ss_pred             HHHhc----C-CC-CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            00000    0 00 113344567899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=1.7e-39  Score=274.02  Aligned_cols=236  Identities=22%  Similarity=0.250  Sum_probs=190.3

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH-----HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ...+|...+.+|.|++  |.||++..     .++|.....  .....+.+|+.+++.++||||+++++++.+....++||
T Consensus         4 ~~~~y~~~~~ig~g~~--~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (261)
T cd05148           4 PREEFTLERKLGSGYF--GEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIIT   81 (261)
T ss_pred             cHHHHHHhhhhccCCC--ccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEE
Confidence            4567788889999999  99998722     112222221  23456789999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++++|.+++.......+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.++++|||.+....   
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~  158 (261)
T cd05148          82 ELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLIKEDV  158 (261)
T ss_pred             eecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccCcceEEEcCCceEEEccccchhhcCCcc
Confidence            999999999999875556799999999999999999999999   99999999999999999999999999986543   


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                              +..|++||.+....++.++|+||||+++++|++ |..||....   .. .....    ....     .. ..
T Consensus       159 ~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~---~~-~~~~~----~~~~-----~~-~~  224 (261)
T cd05148         159 YLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMN---NH-EVYDQ----ITAG-----YR-MP  224 (261)
T ss_pred             ccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCC---HH-HHHHH----HHhC-----Cc-CC
Confidence                    245999999988888999999999999999998 888885431   11 11110    0100     00 12


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+...+..+.+++.+||+.||++|||++++++.|
T Consensus       225 ~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L  258 (261)
T cd05148         225 CPAKCPQEIYKIMLECWAAEPEDRPSFKALREEL  258 (261)
T ss_pred             CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence            3445667899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-41  Score=286.80  Aligned_cols=230  Identities=21%  Similarity=0.212  Sum_probs=188.5

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ..|....+||+|.|  |.||+|..      +++|.++   ...+.++..+|+.+|++++++||.+.||.+..+..++++|
T Consensus        13 ~~~~~~~~IgrGsf--G~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiM   90 (467)
T KOG0201|consen   13 LLYTKLELIGRGSF--GEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIM   90 (467)
T ss_pred             cccccchhcccccc--ceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHH
Confidence            45666789999999  99999922      2222222   2244566779999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee-----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL-----  167 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~-----  167 (274)
                      |||.+|++.+.+..  ...+.+..+.-++++++.|+.|||.+   +.+|||||+.||++..++.+|++|||++..     
T Consensus        91 ey~~gGsv~~lL~~--~~~~~E~~i~~ilre~l~~l~ylH~~---~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~  165 (467)
T KOG0201|consen   91 EYCGGGSVLDLLKS--GNILDEFEIAVILREVLKGLDYLHSE---KKIHRDIKAANILLSESGDVKLADFGVAGQLTNTV  165 (467)
T ss_pred             HHhcCcchhhhhcc--CCCCccceeeeehHHHHHHhhhhhhc---ceecccccccceeEeccCcEEEEecceeeeeechh
Confidence            99999999999975  44558888888999999999999999   999999999999999999999999999854     


Q ss_pred             ------cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          168 ------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       168 ------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                            .+|+.|||||+++...|+.++||||||++.+||++|.+|+.... +.....        .....     .|...
T Consensus       166 ~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~h-Pmrvlf--------lIpk~-----~PP~L  231 (467)
T KOG0201|consen  166 KRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLH-PMRVLF--------LIPKS-----APPRL  231 (467)
T ss_pred             hccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccC-cceEEE--------eccCC-----CCCcc
Confidence                  34889999999998899999999999999999999999996431 100000        00000     11123


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....+..+++++..||++||+.||||.++++
T Consensus       232 ~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  232 DGDFSPPFKEFVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             ccccCHHHHHHHHHHhhcCcccCcCHHHHhh
Confidence            3467788999999999999999999999986

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=3.5e-39  Score=271.58  Aligned_cols=235  Identities=18%  Similarity=0.166  Sum_probs=187.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHH----HHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEE-eCCcceEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM----RALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAM-RGSKPSTEAALD   95 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~----~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~lv~e~~   95 (274)
                      .++|.....+|.|++  |.||++.    ..++|........+.+.+|+.++++++|+|++++++++. +++..++++||+
T Consensus         5 ~~~~~~~~~lg~g~~--~~v~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~   82 (256)
T cd05082           5 MKELKLLQTIGKGEF--GDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   82 (256)
T ss_pred             HHhCeeeeeecccCC--CeEEEEEEcCCcEEEEEeCCCchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECC
Confidence            356777889999999  9999872    222222333233456789999999999999999999865 456789999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++++|.+++.......+++..++.++.|++.||.|||++   +++|+||||+||+++.++.++++|||.+....      
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~  159 (256)
T cd05082          83 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG  159 (256)
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccccchheEEEcCCCcEEecCCccceeccccCCCC
Confidence            999999999875555689999999999999999999999   99999999999999999999999999987543      


Q ss_pred             --CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHH
Q 048314          170 --DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNL  246 (274)
Q Consensus       170 --~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (274)
                        +..|+|||.+....++.++|+||||+++|+|++ |+.||.....    ..+..    ....+      .....+...+
T Consensus       160 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~----~~~~~----~~~~~------~~~~~~~~~~  225 (256)
T cd05082         160 KLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL----KDVVP----RVEKG------YKMDAPDGCP  225 (256)
T ss_pred             ccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCH----HHHHH----HHhcC------CCCCCCCCCC
Confidence              336999999988888999999999999999997 8888853311    01111    01110      0112334556


Q ss_pred             HHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          247 ENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       247 ~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+.+++.+||+.||++|||+.++++.|
T Consensus       226 ~~~~~li~~~l~~~p~~Rpt~~~l~~~l  253 (256)
T cd05082         226 PVVYDVMKQCWHLDAATRPSFLQLREQL  253 (256)
T ss_pred             HHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence            7899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-39  Score=272.48  Aligned_cols=235  Identities=21%  Similarity=0.235  Sum_probs=189.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHH----HHHHHHhcCC-CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM----RALMATVNSP-YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~----~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      .++|...+.+|.|++  |.||++.    .+++|..... ...+++.+|+.++++++|+||+++++++.+.+..++||||+
T Consensus         5 ~~~~~~~~~ig~g~~--g~v~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   82 (256)
T cd05039           5 SKELKLGATIGKGEF--GDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYM   82 (256)
T ss_pred             hhhccceeeeecCCC--ceEEEEEecCcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEec
Confidence            457778899999999  9999872    1122222222 22456789999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++++|.+++.......+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+....      
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~~  159 (256)
T cd05039          83 AKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSG  159 (256)
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccchhcccceEEEeCCCCEEEcccccccccccccccC
Confidence            999999999875445799999999999999999999999   99999999999999999999999999887543      


Q ss_pred             --CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHH
Q 048314          170 --DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNL  246 (274)
Q Consensus       170 --~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (274)
                        ...|+|||.+....++.++|+||||++++++++ |..||....   .. .+..    .....     . ....+...+
T Consensus       160 ~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~---~~-~~~~----~~~~~-----~-~~~~~~~~~  225 (256)
T cd05039         160 KLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP---LK-DVVP----HVEKG-----Y-RMEAPEGCP  225 (256)
T ss_pred             CCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCC---HH-HHHH----HHhcC-----C-CCCCccCCC
Confidence              345999999988888999999999999999997 999986431   11 1111    00110     0 012333456


Q ss_pred             HHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          247 ENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       247 ~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+.+++.+||..+|++|||+.+++++|
T Consensus       226 ~~~~~li~~~l~~~p~~Rp~~~~l~~~l  253 (256)
T cd05039         226 PEVYKVMKDCWELDPAKRPTFKQLREQL  253 (256)
T ss_pred             HHHHHHHHHHhccChhhCcCHHHHHHHH
Confidence            7899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=1.8e-39  Score=276.52  Aligned_cols=236  Identities=20%  Similarity=0.277  Sum_probs=185.5

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      .+++|...+.+|.|++  |.||++..           .++|.....   ....++.+|+.++++++||||+++++++.+.
T Consensus         4 ~~~~~~~~~~ig~G~~--g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~   81 (277)
T cd05062           4 AREKITMSRELGQGSF--GMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG   81 (277)
T ss_pred             cHHHceeeeeeccccC--CeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence            4677888999999999  99997621           111222111   1123477899999999999999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcE
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSA--------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA  157 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~  157 (274)
                      ...++||||+++|+|.+++....        ...+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.+
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~vH~dlkp~Nil~~~~~~~  158 (277)
T cd05062          82 QPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTV  158 (277)
T ss_pred             CCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCcchheEEEcCCCCE
Confidence            99999999999999999997532        12368889999999999999999999   99999999999999999999


Q ss_pred             EEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHH
Q 048314          158 KISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWV  223 (274)
Q Consensus       158 kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~  223 (274)
                      +++|||++....             +..|+|||.+....++.++|+||||+++|||++ |..||....   ... ...  
T Consensus       159 ~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~---~~~-~~~--  232 (277)
T cd05062         159 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMS---NEQ-VLR--  232 (277)
T ss_pred             EECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCC---HHH-HHH--
Confidence            999999875321             346999999988889999999999999999998 678885331   111 111  


Q ss_pred             HHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          224 YKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .......      ...+...+..+.+++.+||+.||++|||+.|++++|
T Consensus       233 --~~~~~~~------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l  275 (277)
T cd05062         233 --FVMEGGL------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSI  275 (277)
T ss_pred             --HHHcCCc------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHh
Confidence              1111110      123344567899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=5.8e-39  Score=270.88  Aligned_cols=233  Identities=20%  Similarity=0.237  Sum_probs=185.8

Q ss_pred             hhccccccCCCCCCCCcchhHHH-----HHHHHHhcC-CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM-----RALMATVNS-PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~-----~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      ++|...+.+|.|++  |.||++.     ..++|.... ....+.+.+|+.++++++|+|++++++++. ....+++|||+
T Consensus         6 ~~~~~~~~ig~g~~--~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~   82 (260)
T cd05070           6 ESLQLIKKLGNGQF--GEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYM   82 (260)
T ss_pred             HHhhhhheeccccC--ceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEec
Confidence            46777888999999  9999882     122222222 233456889999999999999999999875 45689999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++++|.+++.......+++..+..++.|++.||.|||+.   +++|+||+|.||+++.++.++++|||.+....      
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~  159 (260)
T cd05070          83 SKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM---NYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTA  159 (260)
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEEeCCceEEeCCceeeeeccCccccc
Confidence            999999999864455689999999999999999999999   99999999999999999999999999986532      


Q ss_pred             ------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 ------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 ------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            +..|+|||.+....++.++|+||||+++|++++ |..||....    .......    ....      ...+.+
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~----~~~~~~~----~~~~------~~~~~~  225 (260)
T cd05070         160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMN----NREVLEQ----VERG------YRMPCP  225 (260)
T ss_pred             ccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCC----HHHHHHH----HHcC------CCCCCC
Confidence                  235999999888888999999999999999999 888885431    1111111    0000      011234


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+..+.+++.+||..||++|||++++.+.|
T Consensus       226 ~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l  257 (260)
T cd05070         226 QDCPISLHELMLQCWKKDPEERPTFEYLQSFL  257 (260)
T ss_pred             CcCCHHHHHHHHHHcccCcccCcCHHHHHHHH
Confidence            45667899999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.1e-39  Score=275.19  Aligned_cols=234  Identities=21%  Similarity=0.228  Sum_probs=185.4

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|...+.+|+|+|  |.||++..      .++|.+     ........+.+|+.++++++||||+++++.+.+++..++|
T Consensus         1 ~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   78 (285)
T cd05605           1 TFRHYRVLGKGGF--GEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV   78 (285)
T ss_pred             CceEEEEEecCCC--eEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEE
Confidence            3666788999999  99998721      111211     1112234567899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |||+.+|+|.+++.......+++..+..++.|++.||.|||+.   +++|+||+|+||++++++.++|+|||++....  
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~  155 (285)
T cd05605          79 LTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVEIPEG  155 (285)
T ss_pred             EeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHEEECCCCCEEEeeCCCceecCCC
Confidence            9999999999998764445799999999999999999999999   99999999999999999999999999987532  


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                              +..|+|||.+....++.++|+||+|+++|++++|..||............    ...     +..  .....
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~----~~~-----~~~--~~~~~  224 (285)
T cd05605         156 ETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEV----ERR-----VKE--DQEEY  224 (285)
T ss_pred             CccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHH----HHH-----hhh--ccccc
Confidence                    46799999998888999999999999999999999999743211110000    000     000  01123


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      +...+..+.+++..||+.||++||     +++++++
T Consensus       225 ~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05605         225 SEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKA  260 (285)
T ss_pred             CcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhc
Confidence            445667889999999999999999     8888865

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=7.2e-39  Score=273.15  Aligned_cols=228  Identities=22%  Similarity=0.240  Sum_probs=177.2

Q ss_pred             CCCCCCCCcchhHHHH-------H---H-HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCC
Q 048314           30 NDRNSPRSKSVWSCMR-------A---L-MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPW   98 (274)
Q Consensus        30 ~g~g~~~~g~vy~~~~-------~---~-~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g   98 (274)
                      +|.|+|  |.||++..       +   + +...........+..|++++++++||||+++++++.++...++||||++++
T Consensus         1 lg~G~~--g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~   78 (277)
T cd05607           1 LGKGGF--GEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGG   78 (277)
T ss_pred             CCCCCc--eEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCC
Confidence            689999  99998711       1   1 111111122334567999999999999999999999999999999999999


Q ss_pred             CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----------
Q 048314           99 DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----------  168 (274)
Q Consensus        99 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----------  168 (274)
                      +|.+++.......+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...          
T Consensus        79 ~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~  155 (277)
T cd05607          79 DLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSM---DIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRA  155 (277)
T ss_pred             CHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeeccC
Confidence            999998765555699999999999999999999999   9999999999999999999999999987643          


Q ss_pred             CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHH
Q 048314          169 SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLEN  248 (274)
Q Consensus       169 ~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (274)
                      ++..|+|||++....++.++|+||+||++|+|++|..||.............        .........  ......+.+
T Consensus       156 ~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~~~~  225 (277)
T cd05607         156 GTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELK--------RRTLEDEVK--FEHQNFTEE  225 (277)
T ss_pred             CCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHH--------HHhhccccc--cccccCCHH
Confidence            2568999999988889999999999999999999999996432211111110        000000000  011234567


Q ss_pred             HHHHHHHhhccCCCCCCChhhHHh
Q 048314          249 LVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       249 ~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +.+++..||+.||++|||++|+++
T Consensus       226 ~~~li~~~L~~~P~~R~~~~~~~~  249 (277)
T cd05607         226 SKDICRLFLAKKPEDRLGSREKND  249 (277)
T ss_pred             HHHHHHHHhccCHhhCCCCccchh
Confidence            899999999999999999976553

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=2.8e-39  Score=277.00  Aligned_cols=235  Identities=18%  Similarity=0.226  Sum_probs=185.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      .++|...+.+|.|+|  |.||++..           .+++.....  ...+.+.+|+.++++++||||+++++++.+.+.
T Consensus         4 ~~~~~~~~~lg~G~~--~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   81 (288)
T cd05093           4 RHNIVLKRELGEGAF--GKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDP   81 (288)
T ss_pred             hHHeeeccccCCcCC--eeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCc
Confidence            467888899999999  99998731           111222211  123457899999999999999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCC-----------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 048314           88 PSTEAALDLPWDLAYIIFCSA-----------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT  156 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~  156 (274)
                      .++||||+++++|.+++....           ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.
T Consensus        82 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~---~i~H~dlkp~Nili~~~~~  158 (288)
T cd05093          82 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLL  158 (288)
T ss_pred             cEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCc
Confidence            999999999999999997532           13489999999999999999999999   9999999999999999999


Q ss_pred             EEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHH
Q 048314          157 AKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNW  222 (274)
Q Consensus       157 ~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~  222 (274)
                      ++++|||.+....             +..|+|||.+....++.++|+||||+++++|++ |..||....   ... ..  
T Consensus       159 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~---~~~-~~--  232 (288)
T cd05093         159 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS---NNE-VI--  232 (288)
T ss_pred             EEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC---HHH-HH--
Confidence            9999999986432             336999999988888999999999999999998 888885431   110 00  


Q ss_pred             HHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          223 VYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .....+...      ..+...+.++.+++.+||+.||.+|||+.++++.|
T Consensus       233 --~~i~~~~~~------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l  276 (288)
T cd05093         233 --ECITQGRVL------QRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLL  276 (288)
T ss_pred             --HHHHcCCcC------CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence              111111110      12233456799999999999999999999997654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=3.4e-39  Score=282.29  Aligned_cols=246  Identities=17%  Similarity=0.182  Sum_probs=184.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|...+.+|.|+|  |.||++..      .+++.....   ...+.+.+|++++++++||||+++++++.+++..++|
T Consensus         4 ~~~y~~~~~lg~g~~--g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   81 (333)
T cd06650           4 DDDFEKISELGAGNG--GVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC   81 (333)
T ss_pred             hhhhheeccccCCCC--EEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEE
Confidence            467888999999999  99998721      122222111   1234578999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |||+++|+|.+++..  .+.+++.....++.|++.||.|||+.  .+++|+||||+||+++.++.+||+|||++...   
T Consensus        82 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~l~~~l~~lH~~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~  157 (333)
T cd06650          82 MEHMDGGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  157 (333)
T ss_pred             EecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhh
Confidence            999999999999975  45689999999999999999999974  17999999999999999999999999988643   


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHH--------------------H
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN--------------------W  222 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~--------------------~  222 (274)
                            ++..|+|||.+.+..++.++|+|||||++|+|++|+.||...........+..                    .
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T cd06650         158 MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRP  237 (333)
T ss_pred             ccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccch
Confidence                  35679999999888889999999999999999999999964311100000000                    0


Q ss_pred             HHHH-------Hhhhhhhh-hhcCC--cc-CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          223 VYKC-------FINRELNK-LVRGT--EV-DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       223 ~~~~-------~~~~~~~~-~~~~~--~~-~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....       ........ +....  .. ....+.++.+++.+||+.||++|||++|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~  298 (333)
T cd06650         238 LSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMV  298 (333)
T ss_pred             hhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhh
Confidence            0000       00000000 00000  01 1123467899999999999999999999975

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=7.6e-39  Score=270.87  Aligned_cols=224  Identities=17%  Similarity=0.230  Sum_probs=173.3

Q ss_pred             cCCCCCCCCcchhHHHH------------------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           29 LNDRNSPRSKSVWSCMR------------------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~------------------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      .+|+|++  |.||+|..                  +++|.....  .....+.+|+.+++.++||||+++++++.++...
T Consensus         2 ~lg~G~~--~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~   79 (262)
T cd05077           2 HLGRGTR--TQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVEN   79 (262)
T ss_pred             ccccCCc--ceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC
Confidence            5899999  99999942                  111211111  1223567889999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc-------EEEec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-------AKISD  161 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~-------~kl~d  161 (274)
                      +++|||+++|+|..++.. ....+++..++.++.|++.||+|||+.   +++||||||+||+++.++.       ++++|
T Consensus        80 ~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d  155 (262)
T cd05077          80 IMVEEFVEFGPLDLFMHR-KSDVLTTPWKFKVAKQLASALSYLEDK---DLVHGNVCTKNILLAREGIDGECGPFIKLSD  155 (262)
T ss_pred             EEEEecccCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHhhhC---CeECCCCCcccEEEecCCccCCCCceeEeCC
Confidence            999999999999999875 345689999999999999999999999   9999999999999976553       89999


Q ss_pred             cccceecC-------CCCcCCCcccc-cCCCccccceeehhHhHHHHh-hcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          162 FGLAKLLS-------DKGCMAPECYK-RTPISVKADVYGYGIVLLETI-CCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       162 ~g~~~~~~-------~~~~~ape~~~-~~~~~~~~Di~s~G~~l~el~-~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      ||.+....       +..|+|||.+. ...++.++||||||+++|+|+ .|..|+...... .   ...     ......
T Consensus       156 ~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~-~---~~~-----~~~~~~  226 (262)
T cd05077         156 PGIPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLA-E---KER-----FYEGQC  226 (262)
T ss_pred             CCCCccccCcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchh-H---HHH-----HHhcCc
Confidence            99886432       45699999886 456889999999999999997 577777532110 0   000     000000


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                             ........++.+++.+||+.||++||++.+|++.|
T Consensus       227 -------~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         227 -------MLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             -------cCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence                   11112246789999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-39  Score=285.07  Aligned_cols=231  Identities=18%  Similarity=0.147  Sum_probs=191.3

Q ss_pred             cccccCCCCCCCCcchhHH------HHHHHHHhc--CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCC
Q 048314           25 CRSSLNDRNSPRSKSVWSC------MRALMATVN--SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        25 ~~~~~~g~g~~~~g~vy~~------~~~~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      ....-+|.|.|  |+||++      ..++-|.+.  +.+..++++-||.||+.+.||+||+|++.|+..+.+++..|||+
T Consensus        35 eIiGELGDGAF--GKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~  112 (1187)
T KOG0579|consen   35 EIIGELGDGAF--GKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCG  112 (1187)
T ss_pred             HHHhhhcCccc--hhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecC
Confidence            33566899999  999999      333333333  33667889999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce----------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK----------  166 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~----------  166 (274)
                      ||.++..+.. -+..|.+.++..++.|++.||.|||+.   .|||||||..|||+..+|.++|+|||++.          
T Consensus       113 GGAVDaimlE-L~r~LtE~QIqvvc~q~ldALn~LHs~---~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRD  188 (1187)
T KOG0579|consen  113 GGAVDAIMLE-LGRVLTEDQIQVVCYQVLDALNWLHSQ---NIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRD  188 (1187)
T ss_pred             CchHhHHHHH-hccccchHHHHHHHHHHHHHHHHHhhc---chhhhhccccceEEEecCcEeeecccccccchhHHhhhc
Confidence            9999999987 457899999999999999999999999   99999999999999999999999999984          


Q ss_pred             -ecCCCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          167 -LLSDKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       167 -~~~~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                       +++++.|||||++.     ..+|++++||||||++|.||..+.+|....       +-...+... .+...+.+    .
T Consensus       189 sFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhel-------npMRVllKi-aKSePPTL----l  256 (1187)
T KOG0579|consen  189 SFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHEL-------NPMRVLLKI-AKSEPPTL----L  256 (1187)
T ss_pred             cccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCcccc-------chHHHHHHH-hhcCCCcc----c
Confidence             45689999999764     468999999999999999999999987422       111111111 11111111    3


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .|..++..+.+++.+||.+||..||+++++++.
T Consensus       257 qPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~H  289 (1187)
T KOG0579|consen  257 QPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKH  289 (1187)
T ss_pred             CcchhhhHHHHHHHHHHhcCCccCCCHHHHhhC
Confidence            677899999999999999999999999999863

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=5.4e-39  Score=274.44  Aligned_cols=234  Identities=18%  Similarity=0.185  Sum_probs=184.6

Q ss_pred             hhccccccCCCCCCCCcchhHHHH----------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR----------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      .+|+....+|+|+|  |.||+|..          .++|.....   .....+.+|+.++++++||||+++++++......
T Consensus         5 ~~~~~~~~lg~g~~--g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   82 (283)
T cd05090           5 SAVRFMEELGECAF--GKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPV   82 (283)
T ss_pred             hhceeeeeccccCC--cceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCce
Confidence            46777788999999  99999731          112222211   1124577899999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCC---------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC
Q 048314           89 STEAALDLPWDLAYIIFCSA---------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE  153 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~---------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~  153 (274)
                      +++|||+++++|.+++....               ...+++.....++.|++.||.|||+.   +++|+||||+||+++.
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~nili~~  159 (283)
T cd05090          83 CMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH---FFVHKDLAARNILIGE  159 (283)
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc---CeehhccccceEEEcC
Confidence            99999999999999996321               23478999999999999999999999   9999999999999999


Q ss_pred             CCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHH
Q 048314          154 FWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIIL  219 (274)
Q Consensus       154 ~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~  219 (274)
                      ++.++++|||++....             +..|+|||.+....++.++|+||||+++|||++ |..||....   . ...
T Consensus       160 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~---~-~~~  235 (283)
T cd05090         160 QLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS---N-QEV  235 (283)
T ss_pred             CCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC---H-HHH
Confidence            9999999999986432             235999999988888999999999999999998 888885431   0 011


Q ss_pred             HHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..    .......      ...+...+..+.+++.+||+.||++||++.+|+++|
T Consensus       236 ~~----~~~~~~~------~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l  280 (283)
T cd05090         236 IE----MVRKRQL------LPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRL  280 (283)
T ss_pred             HH----HHHcCCc------CCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHh
Confidence            11    0011100      013344567899999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=4.7e-39  Score=275.64  Aligned_cols=243  Identities=16%  Similarity=0.152  Sum_probs=178.8

Q ss_pred             hccccccCCCCCCCCcchhHHHH-------HHHHHhcCC----CCCCcHHHHHHHHhcC---CCCccceEeEEEE-----
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR-------ALMATVNSP----YSPSRPLTLTSIVSRV---SWTTDIEVSSVAM-----   83 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~-------~~~~~~~~~----~~~~~~~~e~~~l~~l---~h~niv~l~~~~~-----   83 (274)
                      +|...+.+|+|+|  |.||++..       .++|.....    .....+.+|+.+++++   +||||++++++|.     
T Consensus         2 ~Y~~~~~lg~G~~--g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~   79 (290)
T cd07862           2 QYECVAEIGEGAY--GKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   79 (290)
T ss_pred             CcceeeEeccCCC--eEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCC
Confidence            4666788999999  99998821       122222211    1223456787777765   6999999999985     


Q ss_pred             eCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccc
Q 048314           84 RGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG  163 (274)
Q Consensus        84 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g  163 (274)
                      .....++||||++ ++|.+++.......+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||
T Consensus        80 ~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~iiH~dlkp~Nil~~~~~~~kl~Dfg  155 (290)
T cd07862          80 RETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFG  155 (290)
T ss_pred             CCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEcCCCCEEEcccc
Confidence            2456899999996 6999999875556799999999999999999999999   99999999999999999999999999


Q ss_pred             cceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh-
Q 048314          164 LAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL-  232 (274)
Q Consensus       164 ~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-  232 (274)
                      ++....          +..|+|||.+....++.++|||||||++|||++|.+||...........+..... ....... 
T Consensus       156 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~-~~~~~~~~  234 (290)
T cd07862         156 LARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIG-LPGEEDWP  234 (290)
T ss_pred             ceEeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhC-CCChhhch
Confidence            986532          5679999999888899999999999999999999999974421111111110000 0000000 


Q ss_pred             ------hhhhcCC------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 ------NKLVRGT------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 ------~~~~~~~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                            .......      ......+..+.+++.+||+.||++|||+.|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         235 RDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             hhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence                  0000000      011234567889999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=3.8e-39  Score=278.36  Aligned_cols=235  Identities=18%  Similarity=0.176  Sum_probs=184.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHHH--------HHHHhcC---CCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMRA--------LMATVNS---PYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~~--------~~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~   88 (274)
                      .++|...+.+|.|+|  |.||++...        +++....   ....+.+.+|+.++.++ +||||+++++++.+++..
T Consensus         6 ~~~~~~~~~lg~G~~--g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~   83 (303)
T cd05088           6 WNDIKFQDVIGEGNF--GQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL   83 (303)
T ss_pred             hhhceeeeeecCCCC--ceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCc
Confidence            467888899999999  999999321        1111111   11223567899999999 899999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC
Q 048314           89 STEAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  154 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  154 (274)
                      ++||||+++|+|.+++....              ...+++..++.++.|++.|++|||+.   +++||||||+||+++.+
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dlkp~Nili~~~  160 (303)
T cd05088          84 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGEN  160 (303)
T ss_pred             eEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEecCC
Confidence            99999999999999997532              13589999999999999999999999   99999999999999999


Q ss_pred             CcEEEeccccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHH
Q 048314          155 WTAKISDFGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWV  223 (274)
Q Consensus       155 ~~~kl~d~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~  223 (274)
                      +.++|+|||++....          +..|+|||.+....++.++||||||+++|+|++ |..||......    ....  
T Consensus       161 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~----~~~~--  234 (303)
T cd05088         161 YVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA----ELYE--  234 (303)
T ss_pred             CcEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChH----HHHH--
Confidence            999999999985321          345999999888888999999999999999998 99998633111    0000  


Q ss_pred             HHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          224 YKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        ...     ... ....+...+..+.+++.+||+.+|++|||+.+++++|
T Consensus       235 --~~~-----~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l  277 (303)
T cd05088         235 --KLP-----QGY-RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL  277 (303)
T ss_pred             --HHh-----cCC-cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence              000     000 0012333456789999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=2.3e-39  Score=296.11  Aligned_cols=230  Identities=16%  Similarity=0.146  Sum_probs=183.5

Q ss_pred             ccccccCCCCCCCCcchhHHHH-------HHHHHhc-CC-CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR-------ALMATVN-SP-YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~-------~~~~~~~-~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      |...+.+|+|++  |.||++..       +++|... .. .....+.+|+.+|+.++|||||++++++.+.+..++||||
T Consensus        69 y~~~~~lg~G~~--g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~  146 (478)
T PTZ00267         69 YVLTTLVGRNPT--TAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEY  146 (478)
T ss_pred             EEEEEEEEeCCC--cEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEEC
Confidence            666888999999  99998721       1111111 11 1123456899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           95 DLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        95 ~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      +++|+|.+++.+.  ....+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++...    
T Consensus       147 ~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~  223 (478)
T PTZ00267        147 GSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR---KMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSV  223 (478)
T ss_pred             CCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCcCHHhEEECCCCcEEEEeCcCceecCCcc
Confidence            9999999988653  234689999999999999999999999   9999999999999999999999999998643    


Q ss_pred             ---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               +++.|+|||.+....++.++|||||||++|+|++|..||....   ... +..   . ...+.      ..
T Consensus       224 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~---~~~-~~~---~-~~~~~------~~  289 (478)
T PTZ00267        224 SLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPS---QRE-IMQ---Q-VLYGK------YD  289 (478)
T ss_pred             ccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC---HHH-HHH---H-HHhCC------CC
Confidence                     3567999999988889999999999999999999999996431   110 000   0 00010      01


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+...+..+.+++.+||+.||++|||+++++.
T Consensus       290 ~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        290 PFPCPVSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             CCCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence            234455678999999999999999999999875

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=2.2e-39  Score=261.08  Aligned_cols=240  Identities=18%  Similarity=0.155  Sum_probs=185.7

Q ss_pred             hccccccCCCCCCCCcchhHH-------HHHHHHHhcCC--CC-CCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSP--YS-PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~--~~-~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .|.....+|+|.|  |.||++       .+++||+....  +. ....++||+.|+.++|+||+.++++|-..+...||+
T Consensus         3 rY~~~~~lGEG~~--gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVf   80 (318)
T KOG0659|consen    3 RYEKLEKLGEGTY--GVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVF   80 (318)
T ss_pred             hhhhhhhhcCcce--EEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEE
Confidence            4555778999999  999999       33333322211  12 233579999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      |||+ -+|+..++. +...++...++.++.+++.|++|||++   .|+|||+||.|+|++.++.+|++|||+++..+   
T Consensus        81 Efm~-tdLe~vIkd-~~i~l~pa~iK~y~~m~LkGl~y~H~~---~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~  155 (318)
T KOG0659|consen   81 EFMP-TDLEVVIKD-KNIILSPADIKSYMLMTLKGLAYCHSK---WILHRDLKPNNLLISSDGQLKIADFGLARFFGSPN  155 (318)
T ss_pred             Eecc-ccHHHHhcc-cccccCHHHHHHHHHHHHHHHHHHHhh---hhhcccCCccceEEcCCCcEEeecccchhccCCCC
Confidence            9997 489999987 566799999999999999999999999   99999999999999999999999999999876   


Q ss_pred             --------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh---------h
Q 048314          170 --------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR---------E  231 (274)
Q Consensus       170 --------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---------~  231 (274)
                              +.-|+|||.+.+. .|+..+|+||.||++.||+.|.+.|... +..++   ...+...+...         .
T Consensus       156 ~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~-sDidQ---L~~If~~LGTP~~~~WP~~~~  231 (318)
T KOG0659|consen  156 RIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGD-SDIDQ---LSKIFRALGTPTPDQWPEMTS  231 (318)
T ss_pred             cccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCC-chHHH---HHHHHHHcCCCCcccCccccc
Confidence                    3458999988765 5899999999999999999988777543 22222   11111211111         0


Q ss_pred             hhhhhc----CC----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          232 LNKLVR----GT----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       232 ~~~~~~----~~----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      +.++++    |.    ..-..++.+..+++..||..||.+|+|+.|++++
T Consensus       232 lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  232 LPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             cccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence            111111    10    1122345667999999999999999999999874

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=8.3e-39  Score=270.49  Aligned_cols=233  Identities=20%  Similarity=0.242  Sum_probs=184.6

Q ss_pred             hhccccccCCCCCCCCcchhHHH-----HHHHHHhcC-CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM-----RALMATVNS-PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~-----~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      ++|...+.+|.|++  |.||++.     ..++|.... ....+.+.+|+.++++++||||+++++.+. .+..++||||+
T Consensus         6 ~~~~~~~~lg~g~~--~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~   82 (262)
T cd05071           6 ESLRLEVKLGQGCF--GEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYM   82 (262)
T ss_pred             HHeeEeeecCCCCC--CcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcC
Confidence            45777889999999  9999882     122222222 233456889999999999999999999874 45689999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++|+|.+++.......+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+....      
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~  159 (262)
T cd05071          83 SKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA  159 (262)
T ss_pred             CCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcccEEEcCCCcEEeccCCceeecccccccc
Confidence            999999999864445689999999999999999999999   99999999999999999999999999986432      


Q ss_pred             ------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 ------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 ------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            +..|++||......++.++|+||||+++|++++ |..||.....   .. ..    ......     . +...+
T Consensus       160 ~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~---~~-~~----~~~~~~-----~-~~~~~  225 (262)
T cd05071         160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN---RE-VL----DQVERG-----Y-RMPCP  225 (262)
T ss_pred             ccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCh---HH-HH----HHHhcC-----C-CCCCc
Confidence                  235999999988889999999999999999999 7778853311   10 00    000000     0 01233


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+..+.+++.+||+.||++|||++++++.|
T Consensus       226 ~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l  257 (262)
T cd05071         226 PECPESLHDLMCQCWRKEPEERPTFEYLQAFL  257 (262)
T ss_pred             cccCHHHHHHHHHHccCCcccCCCHHHHHHHH
Confidence            45667899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=7.9e-39  Score=273.10  Aligned_cols=232  Identities=16%  Similarity=0.163  Sum_probs=181.5

Q ss_pred             hhccccccCCCCCCCCcchhHHHH----------HHHHHhcCCCC---CCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR----------ALMATVNSPYS---PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      ++|...+.+|.|+|  |.||+|..          .++|.......   ..++..|+.+++++.||||+++++++. ....
T Consensus         7 ~~~~~~~~lg~G~~--~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~   83 (279)
T cd05111           7 TELRKLKLLGSGVF--GTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASL   83 (279)
T ss_pred             hhceeccccCccCC--cceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCcc
Confidence            46777889999999  99998831          12222222211   234567888899999999999999875 4557


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++++||+++|+|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.+|++|||.++..
T Consensus        84 ~~i~e~~~~gsL~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~  159 (279)
T cd05111          84 QLVTQLSPLGSLLDHVRQ-HRDSLDPQRLLNWCVQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIADFGVADLL  159 (279)
T ss_pred             EEEEEeCCCCcHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEEcCCccceec
Confidence            899999999999999976 345789999999999999999999999   9999999999999999999999999998643


Q ss_pred             C-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 S-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .             +..|++||.+....++.++|+||||+++||+++ |..||.....    .....    ...++..  
T Consensus       160 ~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~----~~~~~----~~~~~~~--  229 (279)
T cd05111         160 YPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRP----HEVPD----LLEKGER--  229 (279)
T ss_pred             cCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCH----HHHHH----HHHCCCc--
Confidence            2             346999999988889999999999999999998 9999864311    11111    1111110  


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .    ..+..++..+.+++.+||..||++|||+.|+++.|
T Consensus       230 ~----~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l  265 (279)
T cd05111         230 L----AQPQICTIDVYMVMVKCWMIDENVRPTFKELANEF  265 (279)
T ss_pred             C----CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            0    12223456789999999999999999999998754

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=5.7e-39  Score=270.58  Aligned_cols=224  Identities=18%  Similarity=0.202  Sum_probs=177.6

Q ss_pred             cCCCCCCCCcchhHHHH--------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCC
Q 048314           29 LNDRNSPRSKSVWSCMR--------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~--------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      .+|+|+|  |.||+|..        .++|.....    ...+.+.+|+.++++++||||+++++++. ....++||||++
T Consensus         2 ~lg~G~~--g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~   78 (257)
T cd05116           2 ELGSGNF--GTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAE   78 (257)
T ss_pred             cCCCcCC--cceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCC
Confidence            4899999  99998721        112222211    12345778999999999999999999875 456799999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-------  169 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-------  169 (274)
                      +|+|.+++..  ...+++.....++.|++.||.|||+.   +++|+||||.||+++.++.++++|||.+....       
T Consensus        79 ~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~  153 (257)
T cd05116          79 LGPLNKFLQK--NKHVTEKNITELVHQVSMGMKYLEET---NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYK  153 (257)
T ss_pred             CCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchhhEEEcCCCeEEECCCccccccCCCCCeee
Confidence            9999999975  35689999999999999999999999   99999999999999999999999999986432       


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +..|+|||.+....++.++|+||||+++|||++ |..||.....    ..+..    ...++.      ....
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~----~~~~~----~i~~~~------~~~~  219 (257)
T cd05116         154 AKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKG----NEVTQ----MIESGE------RMEC  219 (257)
T ss_pred             ecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHH----HHHCCC------CCCC
Confidence                   246999999988888999999999999999997 9999964311    11111    111111      0123


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+.++.++|.+||+.||++|||+++|.+.|
T Consensus       220 ~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l  252 (257)
T cd05116         220 PQRCPPEMYDLMKLCWTYGVDERPGFAVVELRL  252 (257)
T ss_pred             CCCCCHHHHHHHHHHhccCchhCcCHHHHHHHH
Confidence            445678899999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.2e-38  Score=284.26  Aligned_cols=239  Identities=18%  Similarity=0.192  Sum_probs=182.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      .++|.....+|.|+|  |.||++..      .++|.    .....+.+|+.++++++||||+++++++......++|+|+
T Consensus        91 ~~~y~~~~~lg~G~~--g~V~~~~d~~~~~~vaiK~----~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~  164 (391)
T PHA03212         91 KAGFSILETFTPGAE--GFAFACIDNKTCEHVVIKA----GQRGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPR  164 (391)
T ss_pred             cCCcEEEEEEcCCCC--eEEEEEEECCCCCEEEEec----hhhhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEec
Confidence            357888999999999  99999821      11111    1234578999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee-------
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL-------  167 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~-------  167 (274)
                      +. ++|..++..  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||++..       
T Consensus       165 ~~-~~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~ylH~~---~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~  238 (391)
T PHA03212        165 YK-TDLYCYLAA--KRNIAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINAN  238 (391)
T ss_pred             CC-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHhEEEcCCCCEEEEeCCccccccccccc
Confidence            85 789998875  45689999999999999999999999   999999999999999999999999999853       


Q ss_pred             -----cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCCh----hhHHHHHHHHHHHh----------
Q 048314          168 -----LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKP----EEIILTNWVYKCFI----------  228 (274)
Q Consensus       168 -----~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~----~~~~~~~~~~~~~~----------  228 (274)
                           .+++.|+|||++....++.++|||||||++|||++|..|+.......    ....+.. +.....          
T Consensus       239 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~-i~~~~g~~p~~~~~~~  317 (391)
T PHA03212        239 KYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKL-IIRRSGTHPNEFPIDA  317 (391)
T ss_pred             ccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHH-HHHHhcCChhhcCcch
Confidence                 23678999999988889999999999999999999998875321110    0000000 000000          


Q ss_pred             hhhhhh---------hhcCCcc-----CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          229 NRELNK---------LVRGTEV-----DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       229 ~~~~~~---------~~~~~~~-----~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ......         ...+...     ....+.++.+++.+||+.||++|||+.|+++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~  375 (391)
T PHA03212        318 QANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLD  375 (391)
T ss_pred             hHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhc
Confidence            000000         0001001     1123567899999999999999999999986

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=8.2e-39  Score=269.06  Aligned_cols=233  Identities=22%  Similarity=0.268  Sum_probs=185.5

Q ss_pred             hhccccccCCCCCCCCcchhHHHHH----HHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMRA----LMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLP   97 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~~----~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~   97 (274)
                      ++|...+.+|.|+|  |.||+|...    ++|........+.+.+|+.++++++|||++++++++... ..+++|||+++
T Consensus         6 ~~~~~~~~lg~g~~--g~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~~~   82 (254)
T cd05083           6 QKLTLGEIIGEGEF--GAVLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELMSK   82 (254)
T ss_pred             HHceeeeeeccCCC--CceEecccCCCceEEEeecCcchHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECCCC
Confidence            56777899999999  999998321    122222222345678999999999999999999998655 47999999999


Q ss_pred             CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--------
Q 048314           98 WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--------  169 (274)
Q Consensus        98 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--------  169 (274)
                      ++|.+++.......+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.++|+|||.+....        
T Consensus        83 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~  159 (254)
T cd05083          83 GNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKL  159 (254)
T ss_pred             CCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCcEEECCCccceeccccCCCCCC
Confidence            9999999875555689999999999999999999999   99999999999999999999999999886532        


Q ss_pred             CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHH
Q 048314          170 DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLEN  248 (274)
Q Consensus       170 ~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (274)
                      ...|+|||.+....++.++|+||||+++|+|++ |..||.....  .  ...    .....+     ... ..+...+..
T Consensus       160 ~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~--~--~~~----~~~~~~-----~~~-~~~~~~~~~  225 (254)
T cd05083         160 PVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSL--K--EVK----ECVEKG-----YRM-EPPEGCPAD  225 (254)
T ss_pred             CceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCH--H--HHH----HHHhCC-----CCC-CCCCcCCHH
Confidence            346999999988889999999999999999997 8888864311  0  010    111110     011 123345678


Q ss_pred             HHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          249 LVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       249 ~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +.+++.+||+.+|++|||++++++.|
T Consensus       226 ~~~li~~~l~~~p~~Rp~~~~l~~~l  251 (254)
T cd05083         226 VYVLMTSCWETEPKKRPSFHKLREKL  251 (254)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            89999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=2.6e-39  Score=282.04  Aligned_cols=223  Identities=17%  Similarity=0.159  Sum_probs=178.7

Q ss_pred             ccCCCCCCCCcchhHHH-------HH---HHH-HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCC
Q 048314           28 SLNDRNSPRSKSVWSCM-------RA---LMA-TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~-------~~---~~~-~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      +.+|+|+|  |.||++.       ++   +.+ ..........+.+|++++..++||||+++++++.+.+..++||||++
T Consensus         1 ~~lG~G~~--g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~   78 (325)
T cd05594           1 KLLGKGTF--GKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYAN   78 (325)
T ss_pred             CeeeeCCC--EEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCC
Confidence            36899999  9999771       11   111 11122234456789999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      +|+|.+++..  ...+++..+..++.|++.||.|||+ .   +++||||||+||+++.++.+||+|||++...       
T Consensus        79 ~~~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH~~~---~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~  153 (325)
T cd05594          79 GGELFFHLSR--ERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATM  153 (325)
T ss_pred             CCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhcC---CEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCccc
Confidence            9999999875  4579999999999999999999997 7   9999999999999999999999999987542       


Q ss_pred             ----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          169 ----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       169 ----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                          +++.|+|||++....++.++|||||||++|+|++|..||.....   . ....    ....       .....+..
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~---~-~~~~----~i~~-------~~~~~p~~  218 (325)
T cd05594         154 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---E-KLFE----LILM-------EEIRFPRT  218 (325)
T ss_pred             ccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCH---H-HHHH----HHhc-------CCCCCCCC
Confidence                36789999999888899999999999999999999999964311   1 0000    0000       01123444


Q ss_pred             HHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          245 NLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      .+.++.+++.+||+.||++|+     ++.++++
T Consensus       219 ~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~  251 (325)
T cd05594         219 LSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQ  251 (325)
T ss_pred             CCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence            567889999999999999996     8998875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1e-38  Score=278.15  Aligned_cols=222  Identities=16%  Similarity=0.159  Sum_probs=178.6

Q ss_pred             ccCCCCCCCCcchhHHHH---------HHHHHh------cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           28 SLNDRNSPRSKSVWSCMR---------ALMATV------NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~---------~~~~~~------~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +.+|.|+|  |.||++..         .++|.+      ........+.+|+.+|++++||||+++++++.+++..++||
T Consensus         2 ~~lg~G~~--g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   79 (323)
T cd05584           2 KVLGKGGY--GKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLIL   79 (323)
T ss_pred             ceeeecCC--eEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEE
Confidence            46899999  99997621         111111      11122344678999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      ||+++|+|.+++..  .+.+++.....++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++..    
T Consensus        80 e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  154 (323)
T cd05584          80 EYLSGGELFMHLER--EGIFMEDTACFYLSEISLALEHLHQQ---GIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEG  154 (323)
T ss_pred             eCCCCchHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEeeCcCCeecccCC
Confidence            99999999999975  45688999999999999999999999   9999999999999999999999999987632    


Q ss_pred             -------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-c
Q 048314          169 -------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-E  240 (274)
Q Consensus       169 -------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  240 (274)
                             +++.|+|||++....++.++||||||+++|||++|+.||.....   ...             ...+.... .
T Consensus       155 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~---~~~-------------~~~~~~~~~~  218 (323)
T cd05584         155 TVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENR---KKT-------------IDKILKGKLN  218 (323)
T ss_pred             CcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCH---HHH-------------HHHHHcCCCC
Confidence                   35679999999888889999999999999999999999964311   000             01111111 2


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      .+...+..+.+++.+||+.||++||     ++.++++
T Consensus       219 ~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         219 LPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             CCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence            3445567889999999999999999     7887765

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=6.2e-39  Score=276.90  Aligned_cols=242  Identities=16%  Similarity=0.150  Sum_probs=181.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|...+.+|.|+|  |.||+|..      .++|.+...   .....+.+|+.++++++||||+++++++.+....++|
T Consensus         4 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv   81 (303)
T cd07869           4 ADSYEKLEKLGEGSY--ATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLV   81 (303)
T ss_pred             cccceEeeeEEecCC--EEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEE
Confidence            467888899999999  99998821      122222211   2233567999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |||+. ++|.+++.. ....+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++....  
T Consensus        82 ~e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  156 (303)
T cd07869          82 FEYVH-TDLCQYMDK-HPGGLHPENVKLFLFQLLRGLSYIHQR---YILHRDLKPQNLLISDTGELKLADFGLARAKSVP  156 (303)
T ss_pred             EECCC-cCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECCCCcceeccCC
Confidence            99996 688888875 345689999999999999999999999   99999999999999999999999999886432  


Q ss_pred             ---------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh---hhhh---
Q 048314          170 ---------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN---RELN---  233 (274)
Q Consensus       170 ---------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~---  233 (274)
                               +..|+|||.+.+ ..++.++|+||+||++|+|++|..||........  .+.... .....   ....   
T Consensus       157 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~  233 (303)
T cd07869         157 SHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQD--QLERIF-LVLGTPNEDTWPGVH  233 (303)
T ss_pred             CccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHH--HHHHHH-HHhCCCChhhccchh
Confidence                     466999998865 4578899999999999999999999974311111  111100 00000   0000   


Q ss_pred             --hhhc--------CCcc-----CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 --KLVR--------GTEV-----DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 --~~~~--------~~~~-----~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                        ...+        +...     ....+..+.+++..||+.||++|||+.|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         234 SLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             hccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence              0000        0000     0012356789999999999999999999986

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=9.8e-39  Score=272.74  Aligned_cols=226  Identities=19%  Similarity=0.198  Sum_probs=179.0

Q ss_pred             CCCCCCCCcchhHHH-------HHHHHH----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCC
Q 048314           30 NDRNSPRSKSVWSCM-------RALMAT----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPW   98 (274)
Q Consensus        30 ~g~g~~~~g~vy~~~-------~~~~~~----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g   98 (274)
                      +|.|+|  |.||++.       +++|..    .......+.+..|+.++++++|+||+++.+++...+..++||||+++|
T Consensus         1 lg~G~~--g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g   78 (280)
T cd05608           1 LGKGGF--GEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGG   78 (280)
T ss_pred             CCCCCc--eeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCC
Confidence            689999  9999871       111111    111122345678999999999999999999999999999999999999


Q ss_pred             CHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--------
Q 048314           99 DLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------  168 (274)
Q Consensus        99 sL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--------  168 (274)
                      +|.+++...  ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||.+...        
T Consensus        79 ~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~  155 (280)
T cd05608          79 DLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR---RIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTK  155 (280)
T ss_pred             CHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCccceecCCCCcccc
Confidence            999888542  235699999999999999999999999   9999999999999999999999999998642        


Q ss_pred             ---CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh-cCCccCHH
Q 048314          169 ---SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV-RGTEVDKK  244 (274)
Q Consensus       169 ---~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  244 (274)
                         +++.|+|||.+....++.++|+||||+++|+|++|+.||..............            ... .+...+..
T Consensus       156 ~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~------------~~~~~~~~~~~~  223 (280)
T cd05608         156 GYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQ------------RILNDSVTYPDK  223 (280)
T ss_pred             ccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHH------------hhcccCCCCccc
Confidence               25679999999988999999999999999999999999975422211111100            111 11124445


Q ss_pred             HHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          245 NLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      .+..+.+++.+||+.||++||     |++++++
T Consensus       224 ~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~  256 (280)
T cd05608         224 FSPASKSFCEALLAKDPEKRLGFRDGNCDGLRT  256 (280)
T ss_pred             CCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhc
Confidence            677899999999999999999     6677764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.9e-39  Score=282.06  Aligned_cols=220  Identities=18%  Similarity=0.114  Sum_probs=175.3

Q ss_pred             ccCCCCCCCCcchhHHHHH---------HHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           28 SLNDRNSPRSKSVWSCMRA---------LMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~~---------~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      +.+|.|+|  |.||++...         ++|.+.    .......+.+|++++++++||||+++++++.+.+..++||||
T Consensus         2 ~~lg~G~~--g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   79 (318)
T cd05582           2 KVLGQGSF--GKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDF   79 (318)
T ss_pred             ceeeeCCC--EEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcC
Confidence            46899999  999965211         111111    112234466899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec------
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL------  168 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~------  168 (274)
                      +++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...      
T Consensus        80 ~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~  154 (318)
T cd05582          80 LRGGDLFTRLSK--EVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK  154 (318)
T ss_pred             CCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCc
Confidence            999999999975  45699999999999999999999999   9999999999999999999999999987643      


Q ss_pred             -----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          169 -----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       169 -----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                           ++..|+|||.+....++.++|+||||+++|+|++|+.||....   .. .....    ....       ....+.
T Consensus       155 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~---~~-~~~~~----i~~~-------~~~~p~  219 (318)
T cd05582         155 AYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKD---RK-ETMTM----ILKA-------KLGMPQ  219 (318)
T ss_pred             eecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCC---HH-HHHHH----HHcC-------CCCCCC
Confidence                 2557999999988888999999999999999999999996431   11 11000    0000       012344


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCChhh
Q 048314          244 KNLENLVKVGLWCVQDEPALRPSMKC  269 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps~~e  269 (274)
                      ..+..+.+++.+||+.||++|||+.+
T Consensus       220 ~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         220 FLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             CCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence            45678899999999999999999544

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=5.8e-39  Score=272.36  Aligned_cols=231  Identities=17%  Similarity=0.196  Sum_probs=178.8

Q ss_pred             cccccCCCCCCCCcchhHHHH--------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeC------C
Q 048314           25 CRSSLNDRNSPRSKSVWSCMR--------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG------S   86 (274)
Q Consensus        25 ~~~~~~g~g~~~~g~vy~~~~--------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~   86 (274)
                      .....+|.|+|  |.||+|..        .++|....    ....+.+.+|+.++++++||||+++++.+...      .
T Consensus         2 ~i~~~ig~G~~--g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   79 (272)
T cd05075           2 ALGKTLGEGEF--GSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYP   79 (272)
T ss_pred             ccccccCcccC--ceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCC
Confidence            34578999999  99999821        12222111    12245577899999999999999999987532      2


Q ss_pred             cceEEEEeCCCCCHHHHHHhC----CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           87 KPSTEAALDLPWDLAYIIFCS----AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                      ..+++|||+++|+|.+++...    ....+++.....++.|++.||.|||+.   +++||||||+||+++.++.++++||
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Df  156 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADF  156 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhheEEcCCCCEEECCC
Confidence            568999999999999998532    223489999999999999999999999   9999999999999999999999999


Q ss_pred             ccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHh
Q 048314          163 GLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFI  228 (274)
Q Consensus       163 g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~  228 (274)
                      |++....             +..|++||.+....++.++|+||||+++|+|++ |..||....   .. ..    .....
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~---~~-~~----~~~~~  228 (272)
T cd05075         157 GLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVE---NS-EI----YDYLR  228 (272)
T ss_pred             CcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCC---HH-HH----HHHHH
Confidence            9987532             346899999988889999999999999999999 788885421   11 11    01111


Q ss_pred             hhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          229 NRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ++..      ...+...+..+.+++.+||+.||++|||+.+|++.|
T Consensus       229 ~~~~------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l  268 (272)
T cd05075         229 QGNR------LKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCEL  268 (272)
T ss_pred             cCCC------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            1110      012334567799999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=5.7e-39  Score=274.07  Aligned_cols=234  Identities=17%  Similarity=0.185  Sum_probs=184.6

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      +++.-...+|.|+|  |.||++..           .+++.....  ...+.+.+|++++++++|+||+++++++.+.+..
T Consensus         5 ~~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   82 (280)
T cd05092           5 RDIVLKWELGEGAF--GKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPL   82 (280)
T ss_pred             HhceeccccCCccC--CeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCce
Confidence            45666788999999  99998721           111111111  1234578999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCC-------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 048314           89 STEAALDLPWDLAYIIFCSAE-------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW  155 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~-------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~  155 (274)
                      +++|||+++++|.+++.....             ..+++..+..++.|++.|++|||+.   +++|+||||+||++++++
T Consensus        83 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~nil~~~~~  159 (280)
T cd05092          83 LMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL---HFVHRDLATRNCLVGQGL  159 (280)
T ss_pred             EEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC---CeecccccHhhEEEcCCC
Confidence            999999999999999976321             3489999999999999999999999   999999999999999999


Q ss_pred             cEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHH
Q 048314          156 TAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTN  221 (274)
Q Consensus       156 ~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~  221 (274)
                      .++|+|||++....             ++.|+|||.+....++.++|+||||+++|+|++ |..||.....   .. .. 
T Consensus       160 ~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~---~~-~~-  234 (280)
T cd05092         160 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSN---TE-AI-  234 (280)
T ss_pred             CEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCH---HH-HH-
Confidence            99999999986431             346999999988889999999999999999998 8888853311   10 00 


Q ss_pred             HHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          222 WVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                         .....+.      +...+...+..+.+++.+||+.||++|||+++|++.|
T Consensus       235 ---~~~~~~~------~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l  278 (280)
T cd05092         235 ---ECITQGR------ELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRL  278 (280)
T ss_pred             ---HHHHcCc------cCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence               0000100      1123334567889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=1e-38  Score=268.25  Aligned_cols=232  Identities=21%  Similarity=0.260  Sum_probs=186.7

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|.....+|.|++  |.||++..      .+++...    .....+.+.+|+.++++++||||+++++.+.+.+..++||
T Consensus         1 ~~~~~~~l~~g~~--~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd08529           1 DFEILNKIGKGSF--GVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVM   78 (256)
T ss_pred             CceEeEEecCCCC--eEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEE
Confidence            4566788999999  99999822      1111111    1123456778999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++++|.+++.......+++..++.++.|++.||.|||+.   +++|+|++|+||+++.++.++++|||.+....   
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~---~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~  155 (256)
T cd08529          79 EYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNT  155 (256)
T ss_pred             EeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEeCCCCEEEcccccceeccCcc
Confidence            999999999999875456799999999999999999999999   99999999999999999999999999876532   


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                              +..|+|||++....++.++|+||||+++++|++|+.||....   .. ....    ....+..      ...
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~-~~~~----~~~~~~~------~~~  221 (256)
T cd08529         156 NFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN---QG-ALIL----KIIRGVF------PPV  221 (256)
T ss_pred             chhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC---HH-HHHH----HHHcCCC------CCC
Confidence                    456999999998888999999999999999999999996442   11 1100    0011100      113


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      +...+..+.+++.+||+.+|++||++.++++.
T Consensus       222 ~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         222 SQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             ccccCHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence            33556789999999999999999999999863

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=7.7e-39  Score=270.02  Aligned_cols=224  Identities=17%  Similarity=0.173  Sum_probs=177.8

Q ss_pred             CCCCCCCCcchhHHHH--------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCC
Q 048314           30 NDRNSPRSKSVWSCMR--------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPW   98 (274)
Q Consensus        30 ~g~g~~~~g~vy~~~~--------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g   98 (274)
                      +|.|+|  |.||+|..        +++|.....   ...+.+.+|+.++++++||||+++++++. .+..++||||++++
T Consensus         3 ig~G~~--g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~   79 (257)
T cd05115           3 LGSGNF--GCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGG   79 (257)
T ss_pred             cCCCCc--ccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCC
Confidence            899999  99998721        122222221   12345779999999999999999999875 45689999999999


Q ss_pred             CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---------
Q 048314           99 DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---------  169 (274)
Q Consensus        99 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---------  169 (274)
                      +|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++++|||++....         
T Consensus        80 ~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~  155 (257)
T cd05115          80 PLNKFLSG-KKDEITVSNVVELMHQVSMGMKYLEGK---NFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKAR  155 (257)
T ss_pred             CHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhc---CeeecccchheEEEcCCCcEEeccCCccccccCCccceecc
Confidence            99999975 345789999999999999999999999   99999999999999999999999999886432         


Q ss_pred             -----CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          170 -----DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       170 -----~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                           +..|+|||.+....++.++|+||||+++|++++ |..||.....  .  ...    .....+.      ....+.
T Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~--~~~----~~~~~~~------~~~~~~  221 (257)
T cd05115         156 SAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKG--P--EVM----SFIEQGK------RLDCPA  221 (257)
T ss_pred             CCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCH--H--HHH----HHHHCCC------CCCCCC
Confidence                 246999999988888999999999999999996 9999864311  0  000    1111110      112444


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          244 KNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .++.++.+++.+||..||++||++.+|.+.|
T Consensus       222 ~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l  252 (257)
T cd05115         222 ECPPEMYALMKDCWIYKWEDRPNFAKVEERM  252 (257)
T ss_pred             CCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            5678899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=6.9e-39  Score=274.78  Aligned_cols=233  Identities=21%  Similarity=0.222  Sum_probs=184.0

Q ss_pred             hccccccCCCCCCCCcchhHHHHH-----------HHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMRA-----------LMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~~-----------~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      +|...+.+|.|+|  |.||+|...           +++......   ..+++.+|+.++++++||||+++++.+...+..
T Consensus         1 ~~~~~~~lg~g~~--g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   78 (290)
T cd05045           1 NLVLGKTLGEGEF--GKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPL   78 (290)
T ss_pred             CccccccccCcCC--cceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCc
Confidence            3556788999999  999998321           122222111   123577899999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCC----------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCC
Q 048314           89 STEAALDLPWDLAYIIFCSA----------------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKP  146 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~----------------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~  146 (274)
                      ++++||+.+|+|.+++....                      ...+++..++.++.|++.||.|||+.   +++|+||+|
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~ivH~dikp  155 (290)
T cd05045          79 LLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEM---KLVHRDLAA  155 (290)
T ss_pred             EEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHC---Ceehhhhhh
Confidence            99999999999999986421                      13488999999999999999999999   999999999


Q ss_pred             CceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCC
Q 048314          147 QNILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDAS  212 (274)
Q Consensus       147 ~nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~  212 (274)
                      +||++++++.++|+|||.+....             +..|+|||.+....++.++||||||+++++|++ |..||.... 
T Consensus       156 ~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~-  234 (290)
T cd05045         156 RNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA-  234 (290)
T ss_pred             heEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC-
Confidence            99999999999999999986431             346999999888888999999999999999998 888885331 


Q ss_pred             ChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          213 KPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       ..  .+..    ....     ... ...+...+..+.+++.+||+.||++|||++++++.|
T Consensus       235 -~~--~~~~----~~~~-----~~~-~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l  283 (290)
T cd05045         235 -PE--RLFN----LLKT-----GYR-MERPENCSEEMYNLMLTCWKQEPDKRPTFADISKEL  283 (290)
T ss_pred             -HH--HHHH----HHhC-----CCC-CCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHH
Confidence             11  1111    1110     001 123445567899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=8.3e-39  Score=274.50  Aligned_cols=237  Identities=19%  Similarity=0.206  Sum_probs=186.7

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHHH-----------HHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEE
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMRA-----------LMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAM   83 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~~-----------~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~   83 (274)
                      ...++|.....+|+|++  |.||++...           ++|.....   ....++.+|+.++.++ +|+||+++++++.
T Consensus         9 ~~~~~~~~~~~ig~g~~--g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   86 (293)
T cd05053           9 LPRDRLTLGKPLGEGAF--GQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCT   86 (293)
T ss_pred             cCHhHeEEeeEeccccc--ccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEc
Confidence            34567888889999999  999988321           11222111   1123467899999999 7999999999999


Q ss_pred             eCCcceEEEEeCCCCCHHHHHHhC--------------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 048314           84 RGSKPSTEAALDLPWDLAYIIFCS--------------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  149 (274)
Q Consensus        84 ~~~~~~lv~e~~~~gsL~~~l~~~--------------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  149 (274)
                      +++..+++|||+++|+|.+++...              ....+++..++.++.|++.||.|||+.   +++|+||||+||
T Consensus        87 ~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~Ni  163 (293)
T cd05053          87 QEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHRDLAARNV  163 (293)
T ss_pred             CCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CccccccceeeE
Confidence            999999999999999999999752              234689999999999999999999999   999999999999


Q ss_pred             EEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChh
Q 048314          150 LMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPE  215 (274)
Q Consensus       150 l~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~  215 (274)
                      +++.++.++|+|||.+....             +..|+|||.+....++.++|||||||++|++++ |..||.....  .
T Consensus       164 l~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~  241 (293)
T cd05053         164 LVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPV--E  241 (293)
T ss_pred             EEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCH--H
Confidence            99999999999999986432             245999999888889999999999999999997 8888853311  0


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          216 EIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .  ..    .......      ....+...+..+.+++.+||..||++|||+.|+++.|
T Consensus       242 ~--~~----~~~~~~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l  288 (293)
T cd05053         242 E--LF----KLLKEGY------RMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDL  288 (293)
T ss_pred             H--HH----HHHHcCC------cCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHH
Confidence            0  00    1111100      0023445567899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1e-38  Score=284.52  Aligned_cols=230  Identities=17%  Similarity=0.152  Sum_probs=191.4

Q ss_pred             hhccccccCCCCCCCCcchhHH------HHHHHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC------MRALMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      +-|.-..-+|.|+-  |.|-.+      ..+++|++...     .......+|+.+|+-+.|||++++|+++.++.++|+
T Consensus        12 GpwkLgkTLG~Gst--g~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lyl   89 (786)
T KOG0588|consen   12 GPWKLGKTLGKGST--GCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYL   89 (786)
T ss_pred             cceeccccccCCCC--ceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEE
Confidence            44555777999999  888877      34444433332     335556799999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      |.||+++|-|.+++..  ++++++.+..+++.||+.|+.|+|..   +|+|||+||+|+|++.+..+||+|||.+...  
T Consensus        90 vlEyv~gGELFdylv~--kG~l~e~eaa~ff~QIi~gv~yCH~~---~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~  164 (786)
T KOG0588|consen   90 VLEYVPGGELFDYLVR--KGPLPEREAAHFFRQILDGVSYCHAF---NICHRDLKPENLLLDVKNNIKIADFGMASLEVP  164 (786)
T ss_pred             EEEecCCchhHHHHHh--hCCCCCHHHHHHHHHHHHHHHHHhhh---cceeccCCchhhhhhcccCEeeeccceeecccC
Confidence            9999999999999986  67899999999999999999999999   9999999999999999999999999998653  


Q ss_pred             --------CCCCcCCCcccccCCCc-cccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 --------SDKGCMAPECYKRTPIS-VKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 --------~~~~~~ape~~~~~~~~-~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                              +.++|.|||++.+.+|. .++||||+||+||.|++|+.||+.+       ++...+.. ++.+..       
T Consensus       165 gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDd-------Nir~LLlK-V~~G~f-------  229 (786)
T KOG0588|consen  165 GKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDD-------NIRVLLLK-VQRGVF-------  229 (786)
T ss_pred             CccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCc-------cHHHHHHH-HHcCcc-------
Confidence                    36889999999999885 7999999999999999999999733       12221111 111111       


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      +.|...+.+..+|+++|+..||+.|.|++||++.
T Consensus       230 ~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kH  263 (786)
T KOG0588|consen  230 EMPSNISSEAQDLLRRMLDVDPSTRITTEEILKH  263 (786)
T ss_pred             cCCCcCCHHHHHHHHHHhccCccccccHHHHhhC
Confidence            4666777899999999999999999999999863

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=8.2e-39  Score=270.99  Aligned_cols=234  Identities=19%  Similarity=0.199  Sum_probs=187.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      .++|...+.+|+|++  |.||+|..         .++|.....   ...+.+.+|++++++++||||+++++++.+.+..
T Consensus         4 ~~~~~~~~~lg~g~~--g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (268)
T cd05063           4 PSHITKQKVIGAGEF--GEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPA   81 (268)
T ss_pred             hHHceEeeEecCCCC--ccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCc
Confidence            357788899999999  99998832         122222211   1234577899999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||||+++++|.+++.. ..+.+++..+..++.|++.|+.|||+.   +++|+|+||+||+++.++.++++|||++...
T Consensus        82 ~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~  157 (268)
T cd05063          82 MIITEYMENGALDKYLRD-HDGEFSSYQLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLSRVL  157 (268)
T ss_pred             EEEEEcCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEEcCCCcEEECCCccceec
Confidence            999999999999999976 346799999999999999999999999   9999999999999999999999999998644


Q ss_pred             C--------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          169 S--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       169 ~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      .              ...|+|||.+....++.++|+||||+++||+++ |..||.....    .....    .....   
T Consensus       158 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~----~~~~~----~i~~~---  226 (268)
T cd05063         158 EDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN----HEVMK----AINDG---  226 (268)
T ss_pred             ccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH----HHHHH----HHhcC---
Confidence            2              125999999988888999999999999999987 9999854311    11111    11110   


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                         ...+.+...+..+.+++.+||+.+|++||++.+|++.|
T Consensus       227 ---~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l  264 (268)
T cd05063         227 ---FRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLL  264 (268)
T ss_pred             ---CCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence               01122334567889999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.1e-38  Score=283.16  Aligned_cols=227  Identities=21%  Similarity=0.264  Sum_probs=183.9

Q ss_pred             cccCCCCCCCCcchhHH------------HHHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc--ceEEE
Q 048314           27 SSLNDRNSPRSKSVWSC------------MRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK--PSTEA   92 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~------------~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~--~~lv~   92 (274)
                      ..++|+|.|  .+||+|            .+.+-...++....++|..|+.+|+.|+|||||++|.+|.+...  ..+|+
T Consensus        45 ~evLGrGaf--KtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   45 DEVLGRGAF--KTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             hhhcccccc--eeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            678999999  999999            11112233344555789999999999999999999999987554  77899


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEecccccee----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKISDFGLAKL----  167 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~d~g~~~~----  167 (274)
                      |++..|+|..|+.+  .+..+.+.++.|++||+.||.|||++ .|+|||||||++||++.+ .|.+||+|+|++..    
T Consensus       123 EL~TSGtLr~Y~kk--~~~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s  199 (632)
T KOG0584|consen  123 ELFTSGTLREYRKK--HRRVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKS  199 (632)
T ss_pred             ecccCCcHHHHHHH--hccCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhcc
Confidence            99999999999986  56789999999999999999999998 789999999999999975 48899999999864    


Q ss_pred             -----cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          168 -----LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       168 -----~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                           ++||.+||||+.. ..|+..+||||||+.++||+|+.-||.....+. .      +.+.+..+..+.     .+.
T Consensus       200 ~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~A-Q------IYKKV~SGiKP~-----sl~  266 (632)
T KOG0584|consen  200 HAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPA-Q------IYKKVTSGIKPA-----ALS  266 (632)
T ss_pred             ccceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHH-H------HHHHHHcCCCHH-----Hhh
Confidence                 5699999999887 789999999999999999999999997552221 1      112222221111     122


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .-..++++++|.+|+.. .++|||+.|+|+
T Consensus       267 kV~dPevr~fIekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  267 KVKDPEVREFIEKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             ccCCHHHHHHHHHHhcC-chhccCHHHHhh
Confidence            22246789999999999 999999999986

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=5.1e-38  Score=266.16  Aligned_cols=228  Identities=18%  Similarity=0.229  Sum_probs=181.8

Q ss_pred             ccCCCCCCCCcchhHHHH------------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           28 SLNDRNSPRSKSVWSCMR------------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +.+|.|++  |.||+|..            .++|.....   .....+.+|+.++++++||||+++++++...+..+++|
T Consensus         1 ~~lg~g~~--g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (269)
T cd05044           1 NFLGSGAF--GEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIM   78 (269)
T ss_pred             Cccccccc--eeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEE
Confidence            36899999  99998832            233333322   23456789999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCC-----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-----cEEEecc
Q 048314           93 ALDLPWDLAYIIFCSA-----ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-----TAKISDF  162 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-----~~kl~d~  162 (274)
                      ||+++++|.+++....     ...+++..+..++.|++.||.|||+.   +++|+|++|+||+++.+.     .++++||
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~~~~~l~df  155 (269)
T cd05044          79 ELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKIGDF  155 (269)
T ss_pred             eccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC---CcccCCCChheEEEecCCCCCCcceEECCc
Confidence            9999999999997532     23488999999999999999999999   999999999999998877     8999999


Q ss_pred             ccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHh
Q 048314          163 GLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFI  228 (274)
Q Consensus       163 g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~  228 (274)
                      |++....             +..|+|||.+....++.++|+||||+++|+|++ |..||....    .......    ..
T Consensus       156 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~----~~~~~~~----~~  227 (269)
T cd05044         156 GLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALN----NQEVLQH----VT  227 (269)
T ss_pred             ccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccC----HHHHHHH----Hh
Confidence            9875432             356999999998889999999999999999998 999985331    1111110    00


Q ss_pred             hhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          229 NRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..   .   ....+...+..+.+++.+||..+|.+|||+.++++.|
T Consensus       228 ~~---~---~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  267 (269)
T cd05044         228 AG---G---RLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEIL  267 (269)
T ss_pred             cC---C---ccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHH
Confidence            00   0   0123345567899999999999999999999999875

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=6.6e-39  Score=285.41  Aligned_cols=232  Identities=16%  Similarity=0.125  Sum_probs=179.5

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhc-----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVN-----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|.....||+|+|  |.||++..      .++|.+.     .....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus         2 ~f~~~~~LG~G~~--g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv   79 (381)
T cd05626           2 MFVKIKTLGIGAF--GEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV   79 (381)
T ss_pred             CceEEEEEeecCC--EEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEE
Confidence            4666788999999  99998811      1112111     112234577899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee----
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL----  167 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~----  167 (274)
                      |||+++|+|.+++..  ...+++.....++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||++..    
T Consensus        80 ~E~~~gg~L~~~l~~--~~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~  154 (381)
T cd05626          80 MDYIPGGDMMSLLIR--MEVFPEVLARFYIAELTLAIESVHKM---GFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWT  154 (381)
T ss_pred             EecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCcHHHEEECCCCCEEEeeCcCCcccccc
Confidence            999999999999975  45689999999999999999999999   999999999999999999999999998531    


Q ss_pred             ------------------------------------------------------cCCCCcCCCcccccCCCccccceeeh
Q 048314          168 ------------------------------------------------------LSDKGCMAPECYKRTPISVKADVYGY  193 (274)
Q Consensus       168 ------------------------------------------------------~~~~~~~ape~~~~~~~~~~~Di~s~  193 (274)
                                                                            .++..|+|||.+....++.++|||||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSl  234 (381)
T cd05626         155 HNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSV  234 (381)
T ss_pred             cccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeeh
Confidence                                                                  24678999999988889999999999


Q ss_pred             hHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHH--hhccCCCCCCChhhHH
Q 048314          194 GIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLW--CVQDEPALRPSMKCVV  271 (274)
Q Consensus       194 G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--cl~~dp~~Rps~~evl  271 (274)
                      ||++|||++|..||..............+          ..... .+.....+.++.+++.+  |+..+|..|||+.+++
T Consensus       235 G~il~elltG~~Pf~~~~~~~~~~~i~~~----------~~~~~-~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l  303 (381)
T cd05626         235 GVILFEMLVGQPPFLAPTPTETQLKVINW----------ENTLH-IPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIK  303 (381)
T ss_pred             hhHHHHHHhCCCCCcCCCHHHHHHHHHcc----------ccccC-CCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHh
Confidence            99999999999999643211110000000          00000 01112345678888887  5556667799999997


Q ss_pred             h
Q 048314          272 M  272 (274)
Q Consensus       272 ~  272 (274)
                      +
T Consensus       304 ~  304 (381)
T cd05626         304 A  304 (381)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=1.8e-38  Score=267.99  Aligned_cols=233  Identities=19%  Similarity=0.243  Sum_probs=184.2

Q ss_pred             hhccccccCCCCCCCCcchhHHH-----HHHHHHhcC-CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM-----RALMATVNS-PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~-----~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      ++|.....+|.|++  |.||++.     ..++|.... ....+.+.+|+.++++++|||++++++++. .+..+++|||+
T Consensus         6 ~~~~~~~~ig~g~~--~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05069           6 ESLRLDVKLGQGCF--GEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFM   82 (260)
T ss_pred             HHeeeeeeecCcCC--CeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcC
Confidence            45667788999999  9999882     112222222 123356789999999999999999999875 45689999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++++|.+++.......+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+....      
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~  159 (260)
T cd05069          83 GKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTA  159 (260)
T ss_pred             CCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCeEEECCCccceEccCCcccc
Confidence            999999999865445689999999999999999999999   99999999999999999999999999986532      


Q ss_pred             ------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 ------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 ------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            +..|+|||.......+.++|+||||+++|+|++ |..||....   .. .....    ....     . ....+
T Consensus       160 ~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~---~~-~~~~~----~~~~-----~-~~~~~  225 (260)
T cd05069         160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMV---NR-EVLEQ----VERG-----Y-RMPCP  225 (260)
T ss_pred             cCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCC---HH-HHHHH----HHcC-----C-CCCCC
Confidence                  235999999988888999999999999999999 888886331   11 11110    0000     0 01233


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+..+.+++.+||+.||++|||+++|++.|
T Consensus       226 ~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  257 (260)
T cd05069         226 QGCPESLHELMKLCWKKDPDERPTFEYIQSFL  257 (260)
T ss_pred             cccCHHHHHHHHHHccCCcccCcCHHHHHHHH
Confidence            45567899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=1.6e-38  Score=268.21  Aligned_cols=234  Identities=18%  Similarity=0.247  Sum_probs=186.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----HHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      .++|...+.+|.|+|  |.||++..     .++|... .....+++.+|+.++++++|+||+++++++. .+..+++|||
T Consensus         5 ~~~~~~~~~ig~G~~--g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~   81 (260)
T cd05067           5 RETLKLVKKLGAGQF--GEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEY   81 (260)
T ss_pred             hHHceeeeeeccCcc--ceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEc
Confidence            456777889999999  99999832     1122222 2233456889999999999999999999864 5568999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      +++++|.+++.......+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+....     
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~  158 (260)
T cd05067          82 MENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYT  158 (260)
T ss_pred             CCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHHhEEEcCCCCEEEccCcceeecCCCCcc
Confidence            9999999999865556799999999999999999999999   99999999999999999999999999986533     


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +..|+|||.+....++.++|+||||+++|++++ |+.||.....+    .....    ....     . ..+.
T Consensus       159 ~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~----~~~~~----~~~~-----~-~~~~  224 (260)
T cd05067         159 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNP----EVIQN----LERG-----Y-RMPR  224 (260)
T ss_pred             cccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChH----HHHHH----HHcC-----C-CCCC
Confidence                   246999999988888999999999999999998 99999643111    01000    0000     0 0123


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+.++.+++.+||+.||++|||++++++.|
T Consensus       225 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l  257 (260)
T cd05067         225 PDNCPEELYELMRLCWKEKPEERPTFEYLRSVL  257 (260)
T ss_pred             CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHh
Confidence            334567899999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=2e-38  Score=277.91  Aligned_cols=236  Identities=17%  Similarity=0.203  Sum_probs=184.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCCCC---CCcHHHHHHHHhcC-CCCccceEeEEEEe-
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSPYS---PSRPLTLTSIVSRV-SWTTDIEVSSVAMR-   84 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~~~---~~~~~~e~~~l~~l-~h~niv~l~~~~~~-   84 (274)
                      .++|...+.+|.|+|  |.||++..           .++|.+.....   .+.+.+|+.++.++ +|+||++++++|.. 
T Consensus         6 ~~~~~i~~~lG~G~f--g~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~   83 (337)
T cd05054           6 RDRLKLGKPLGRGAF--GKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKP   83 (337)
T ss_pred             HHHhhhhcccccCcC--ceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecC
Confidence            356888899999999  99998831           22333332211   23456899999999 79999999998865 


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCC--------------------------------------------------------
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSA--------------------------------------------------------  108 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~--------------------------------------------------------  108 (274)
                      ....+++|||+++++|.+++....                                                        
T Consensus        84 ~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (337)
T cd05054          84 GGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGD  163 (337)
T ss_pred             CCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhh
Confidence            456789999999999999986422                                                        


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-------------CCC
Q 048314          109 ---ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-------------DKG  172 (274)
Q Consensus       109 ---~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-------------~~~  172 (274)
                         ...++|..+..++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||++....             +..
T Consensus       164 ~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~  240 (337)
T cd05054         164 ELYKEPLTLEDLISYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLK  240 (337)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCcc
Confidence               12689999999999999999999999   99999999999999999999999999986532             346


Q ss_pred             cCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHH
Q 048314          173 CMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVK  251 (274)
Q Consensus       173 ~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (274)
                      |+|||.+.+..++.++|||||||++|||++ |..||.......   .+.    ......     .. ...+...+.++.+
T Consensus       241 y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~---~~~----~~~~~~-----~~-~~~~~~~~~~~~~  307 (337)
T cd05054         241 WMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDE---EFC----RRLKEG-----TR-MRAPEYATPEIYS  307 (337)
T ss_pred             ccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccH---HHH----HHHhcc-----CC-CCCCccCCHHHHH
Confidence            999999999999999999999999999997 999986431111   011    111111     01 0123345678999


Q ss_pred             HHHHhhccCCCCCCChhhHHhhC
Q 048314          252 VGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       252 li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ++.+||+.+|++|||+.||++.|
T Consensus       308 l~~~cl~~~p~~RPs~~ell~~l  330 (337)
T cd05054         308 IMLDCWHNNPEDRPTFSELVEIL  330 (337)
T ss_pred             HHHHHccCChhhCcCHHHHHHHH
Confidence            99999999999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=9e-39  Score=275.94  Aligned_cols=237  Identities=18%  Similarity=0.207  Sum_probs=187.0

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEEe
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMR   84 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~   84 (274)
                      ..++|...+.+|.|+|  |.||++..           .++|.....   ...+.+.+|+.+++++ +||||+++++++..
T Consensus        33 ~~~~~~~~~~ig~G~~--g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~  110 (302)
T cd05055          33 PRNNLSFGKTLGAGAF--GKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTI  110 (302)
T ss_pred             cHHHeEEcceeeccCC--eeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEec
Confidence            3467888999999999  99997621           111111111   1123577899999999 79999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      .+..+++|||+++|+|.+++.......+++.++..++.|++.||.|||+.   +++|+||||+||+++.+..++++|||.
T Consensus       111 ~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~dfg~  187 (302)
T cd05055         111 GGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNVLLTHGKIVKICDFGL  187 (302)
T ss_pred             CCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeehhhhccceEEEcCCCeEEECCCcc
Confidence            99999999999999999999864444589999999999999999999999   999999999999999999999999999


Q ss_pred             ceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhh
Q 048314          165 AKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINR  230 (274)
Q Consensus       165 ~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      +....             +..|+|||.+....++.++||||||+++|+|++ |..||........   +..    ....+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~---~~~----~~~~~  260 (302)
T cd05055         188 ARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSK---FYK----LIKEG  260 (302)
T ss_pred             cccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHH---HHH----HHHcC
Confidence            86432             245999999988889999999999999999998 9999864321111   111    00000


Q ss_pred             hhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          231 ELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                           .. ...+...+..+.+++.+||+.+|++|||+.||++.|
T Consensus       261 -----~~-~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l  298 (302)
T cd05055         261 -----YR-MAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLI  298 (302)
T ss_pred             -----Cc-CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence                 00 012233456899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=9.3e-39  Score=271.11  Aligned_cols=237  Identities=15%  Similarity=0.122  Sum_probs=184.5

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhc-CCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeC----
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN-SPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRG----   85 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~----   85 (274)
                      ..+.+.|.....+|.|++  |.||+|..      .++|... .......+.+|+.+++++ +||||+++++++...    
T Consensus         2 ~~~~~~y~~~~~lg~g~~--g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~   79 (272)
T cd06637           2 RDPAGIFELVELVGNGTY--GQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG   79 (272)
T ss_pred             CChhhhhhHHHheeecCC--eEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCC
Confidence            346778888899999999  99998821      2222222 223344577999999998 699999999998753    


Q ss_pred             --CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccc
Q 048314           86 --SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG  163 (274)
Q Consensus        86 --~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g  163 (274)
                        ...+++|||+++++|.+++.......+++..+..++.|++.|++|||+.   +++|+|++|+||+++.++.++|+|||
T Consensus        80 ~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivh~dl~~~nili~~~~~~~l~Dfg  156 (272)
T cd06637          80 MDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFG  156 (272)
T ss_pred             CCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHEEECCCCCEEEccCC
Confidence              4578999999999999999875556799999999999999999999999   99999999999999999999999999


Q ss_pred             cceecC-----------CCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH
Q 048314          164 LAKLLS-----------DKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF  227 (274)
Q Consensus       164 ~~~~~~-----------~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~  227 (274)
                      ++....           +..|+|||++.     ...++.++|+||||+++|+|++|..||..... ....     .  ..
T Consensus       157 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~-~~~~-----~--~~  228 (272)
T cd06637         157 VSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP-MRAL-----F--LI  228 (272)
T ss_pred             CceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCH-HHHH-----H--HH
Confidence            986432           45699999886     33578899999999999999999999953311 0000     0  00


Q ss_pred             hhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 INRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .     ........+...+..+.+++.+||+.||.+|||+.++++
T Consensus       229 ~-----~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         229 P-----RNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             h-----cCCCCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence            0     000111122344567899999999999999999999986

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=1.4e-38  Score=270.14  Aligned_cols=228  Identities=19%  Similarity=0.203  Sum_probs=178.7

Q ss_pred             ccCCCCCCCCcchhHHHH--------HHHHHhcC---CCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR--------ALMATVNS---PYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~--------~~~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +++|.|++  |.||+|..        ++++....   ....+.+.+|+.++.++ +||||+++++++...+..+++|||+
T Consensus         1 ~~lg~g~~--g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~   78 (270)
T cd05047           1 DVIGEGNF--GQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYA   78 (270)
T ss_pred             CcCCCCCC--ceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeC
Confidence            36899999  99999831        11122221   12234577899999999 7999999999999999999999999


Q ss_pred             CCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 048314           96 LPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD  161 (274)
Q Consensus        96 ~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  161 (274)
                      ++|+|.+++....              ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++++|
T Consensus        79 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nili~~~~~~kl~d  155 (270)
T cd05047          79 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIAD  155 (270)
T ss_pred             CCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccccceEEEcCCCeEEECC
Confidence            9999999997532              12488999999999999999999999   999999999999999999999999


Q ss_pred             cccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhh
Q 048314          162 FGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINR  230 (274)
Q Consensus       162 ~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      ||++....          +..|+|||.+....++.++|+||||++++||++ |..||.....   . ....   . ....
T Consensus       156 fgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~---~-~~~~---~-~~~~  227 (270)
T cd05047         156 FGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC---A-ELYE---K-LPQG  227 (270)
T ss_pred             CCCccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCH---H-HHHH---H-HhCC
Confidence            99974221          345999999988888999999999999999997 9999853211   0 0000   0 0000


Q ss_pred             hhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          231 ELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                           . ..+.+...+..+.+++.+||+.||.+|||+.+++.+|
T Consensus       228 -----~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l  265 (270)
T cd05047         228 -----Y-RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL  265 (270)
T ss_pred             -----C-CCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHH
Confidence                 0 0112334556789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=9.8e-39  Score=272.72  Aligned_cols=234  Identities=18%  Similarity=0.176  Sum_probs=183.8

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCCCC---CCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSPYS---PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      .+|...+.+|.|+|  |.||+|..           .++|.......   .+.+..|+.++++++||||+++++++.+.+.
T Consensus         5 ~~~~~~~~lg~G~~--g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~   82 (283)
T cd05091           5 STVRFMEELGEDRF--GKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQP   82 (283)
T ss_pred             HHHHHHHHhCCCCC--CeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCc
Confidence            34556677999999  99999832           11222222111   2346789999999999999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhC--------------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC
Q 048314           88 PSTEAALDLPWDLAYIIFCS--------------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE  153 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~--------------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~  153 (274)
                      .++++||+++++|.+++...              ....+++..+..++.|++.||.|||+.   +++||||||+||++.+
T Consensus        83 ~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~---gi~H~dlkp~Nil~~~  159 (283)
T cd05091          83 LSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRNVLVFD  159 (283)
T ss_pred             eEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc---CccccccchhheEecC
Confidence            99999999999999998632              123488999999999999999999999   9999999999999999


Q ss_pred             CCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHH
Q 048314          154 FWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIIL  219 (274)
Q Consensus       154 ~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~  219 (274)
                      ++.+|++|||+++...             ++.|+|||.+....++.++|+||||+++|||++ |..||.....    ...
T Consensus       160 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~----~~~  235 (283)
T cd05091         160 KLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN----QDV  235 (283)
T ss_pred             CCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCH----HHH
Confidence            9999999999876432             346999999988889999999999999999998 7778753311    011


Q ss_pred             HHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .    ....+...      ...+..++..+.+++..||+.+|++|||+++|+..|
T Consensus       236 ~----~~i~~~~~------~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l  280 (283)
T cd05091         236 I----EMIRNRQV------LPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRL  280 (283)
T ss_pred             H----HHHHcCCc------CCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHh
Confidence            1    11111110      123456678899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=1.4e-38  Score=278.02  Aligned_cols=231  Identities=14%  Similarity=0.173  Sum_probs=179.6

Q ss_pred             ccCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.+|.|+|  |.||++..      .++|.+     ......+.+..|..++.++ +||||+++++++.+.+..++||||+
T Consensus         1 ~~lG~G~~--g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~   78 (329)
T cd05588           1 RVIGRGSY--AKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFV   78 (329)
T ss_pred             CeEeeCCC--eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCC
Confidence            36899999  99998811      111111     1112334467899999988 6999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee--------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------  167 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~--------  167 (274)
                      ++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||+++.        
T Consensus        79 ~~g~L~~~~~~--~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~  153 (329)
T cd05588          79 SGGDLMFHMQR--QRKLPEEHARFYSAEISLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTT  153 (329)
T ss_pred             CCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEECcCccccccccCCCcc
Confidence            99999999875  45799999999999999999999999   999999999999999999999999998763        


Q ss_pred             ---cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChh-hHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          168 ---LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPE-EIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       168 ---~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                         .++..|+|||++....++.++|+|||||++|+|++|+.||........ ......+........       ....|.
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~p~  226 (329)
T cd05588         154 STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEK-------QIRIPR  226 (329)
T ss_pred             ccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcC-------CCCCCC
Confidence               236679999999988899999999999999999999999964322110 011111111111111       112344


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCC------hhhHHh
Q 048314          244 KNLENLVKVGLWCVQDEPALRPS------MKCVVM  272 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps------~~evl~  272 (274)
                      ..+..+.+++.+||+.||.+|||      +.++++
T Consensus       227 ~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~  261 (329)
T cd05588         227 SLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKS  261 (329)
T ss_pred             CCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhc
Confidence            55678899999999999999998      567754

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=1.4e-38  Score=277.95  Aligned_cols=226  Identities=16%  Similarity=0.180  Sum_probs=175.9

Q ss_pred             ccCCCCCCCCcchhHHH------HHHHHHh-----cCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCM------RALMATV-----NSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~------~~~~~~~-----~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.+|+|+|  |.||++.      ..++|.+     ......+.+.+|+.++.++ +||||+++++++.+.+..++||||+
T Consensus         1 ~~lG~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~   78 (329)
T cd05618           1 RVIGRGSY--AKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYV   78 (329)
T ss_pred             CeeeeCCC--eEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCC
Confidence            36899999  9999881      1111111     1112234466888888876 7999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      ++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||+++..       
T Consensus        79 ~~~~L~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~  153 (329)
T cd05618          79 NGGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT  153 (329)
T ss_pred             CCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCcc
Confidence            99999999875  45799999999999999999999999   9999999999999999999999999987642       


Q ss_pred             ----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChh-hHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          169 ----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPE-EIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       169 ----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                          ++..|+|||++.+..++.++|+||||+++|+|++|..||........ ......+........       ....|.
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~-------~~~~p~  226 (329)
T cd05618         154 STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK-------QIRIPR  226 (329)
T ss_pred             ccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcC-------CCCCCC
Confidence                36679999999988899999999999999999999999963221111 011111111111111       112455


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCh
Q 048314          244 KNLENLVKVGLWCVQDEPALRPSM  267 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps~  267 (274)
                      ..+..+.+++.+||+.||++|||+
T Consensus       227 ~~~~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         227 SLSVKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             CCCHHHHHHHHHHhcCCHHHcCCC
Confidence            566788999999999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=4e-39  Score=285.21  Aligned_cols=224  Identities=18%  Similarity=0.228  Sum_probs=189.8

Q ss_pred             cccCCCCCCCCcchhHHHH----------HHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           27 SSLNDRNSPRSKSVWSCMR----------ALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~----------~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ..+||.|-|  |.||+|..          +++|..+   ...+.+.|+.|..+|++++|||||+++|+|.+.+ .++|||
T Consensus       394 ~r~iG~GqF--GdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P-~WivmE  470 (974)
T KOG4257|consen  394 KRLIGEGQF--GDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQP-MWIVME  470 (974)
T ss_pred             HHhhcCCcc--cceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccc-eeEEEe
Confidence            678999999  99999921          1233222   2255788999999999999999999999999776 899999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      +++-|.|..||+. +...|+..+...++.|++.||+|||+.   ..+||||..+|||+.....+||+|||+++...    
T Consensus       471 L~~~GELr~yLq~-nk~sL~l~tL~ly~~Qi~talaYLeSk---rfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~y  546 (974)
T KOG4257|consen  471 LAPLGELREYLQQ-NKDSLPLRTLTLYCYQICTALAYLESK---RFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAY  546 (974)
T ss_pred             cccchhHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHhh---chhhhhhhhhheeecCcceeeecccchhhhccccch
Confidence            9999999999998 556799999999999999999999999   99999999999999999999999999998776    


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHh-hcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETI-CCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-  239 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~-~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  239 (274)
                              ...|||||.+....++..+|||=|||.+||++ .|..||+....                +..+..+-.+. 
T Consensus       547 YkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkN----------------sDVI~~iEnGeR  610 (974)
T KOG4257|consen  547 YKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKN----------------SDVIGHIENGER  610 (974)
T ss_pred             hhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccc----------------cceEEEecCCCC
Confidence                    23599999999999999999999999999986 59999975411                11122222222 


Q ss_pred             -ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          240 -EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       240 -~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                       +.|+.|++.+..|+.+||.+||.+||++.|+...
T Consensus       611 lP~P~nCPp~LYslmskcWayeP~kRPrftei~~~  645 (974)
T KOG4257|consen  611 LPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAI  645 (974)
T ss_pred             CCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHH
Confidence             5788999999999999999999999999998654

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=2e-38  Score=275.98  Aligned_cols=223  Identities=16%  Similarity=0.126  Sum_probs=177.6

Q ss_pred             ccCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.+|.|+|  |.||+|..      .++|.+     ......+.+..|.+++..+ +||||+++++++.+.+..++||||+
T Consensus         1 ~~lG~G~~--g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~   78 (321)
T cd05591           1 KVLGKGSF--GKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYV   78 (321)
T ss_pred             CccccCCC--eEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCC
Confidence            36899999  99998811      111111     1122334567889988865 6999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      ++|+|.+++..  ...+++.....++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...       
T Consensus        79 ~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~  153 (321)
T cd05591          79 NGGDLMFQIQR--SRKFDEPRSRFYAAEVTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTT  153 (321)
T ss_pred             CCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeecccceecccCCccc
Confidence            99999999875  45789999999999999999999999   9999999999999999999999999987642       


Q ss_pred             ----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          169 ----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       169 ----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                          ++..|+|||++....++.++|+||||+++|+|++|+.||....   ... +..   . ....       ....+..
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~---~~~-~~~---~-i~~~-------~~~~p~~  218 (321)
T cd05591         154 TTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADN---EDD-LFE---S-ILHD-------DVLYPVW  218 (321)
T ss_pred             cccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCC---HHH-HHH---H-HHcC-------CCCCCCC
Confidence                2567999999988889999999999999999999999996431   111 110   0 0000       0123334


Q ss_pred             HHHHHHHHHHHhhccCCCCCC-------ChhhHHh
Q 048314          245 NLENLVKVGLWCVQDEPALRP-------SMKCVVM  272 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rp-------s~~evl~  272 (274)
                      .+.++.+++..||+.||++||       ++.++++
T Consensus       219 ~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~  253 (321)
T cd05591         219 LSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQ  253 (321)
T ss_pred             CCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhc
Confidence            457889999999999999999       7788765

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=3.2e-38  Score=265.67  Aligned_cols=224  Identities=18%  Similarity=0.275  Sum_probs=176.3

Q ss_pred             ccCCCCCCCCcchhHHHH----------------HHHHHhcCCCC-CCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           28 SLNDRNSPRSKSVWSCMR----------------ALMATVNSPYS-PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~----------------~~~~~~~~~~~-~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      +.+|.|+|  |.||+|..                .+.+....... ...+.+|+.++++++||||+++++++.. +..++
T Consensus         1 ~~lg~G~~--~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~l   77 (259)
T cd05037           1 EHLGQGTF--TNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR-DENIM   77 (259)
T ss_pred             Cccccccc--ceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec-CCcEE
Confidence            36899999  99998822                12222222212 4567899999999999999999999988 77899


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-------cEEEeccc
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-------TAKISDFG  163 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-------~~kl~d~g  163 (274)
                      ||||+++|+|.+++... ...+++..+..++.|++.||.|||+.   +++|+||||+||+++.++       .++++|||
T Consensus        78 v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg  153 (259)
T cd05037          78 VEEYVKFGPLDVFLHRE-KNNVSLHWKLDVAKQLASALHYLEDK---KLVHGNVCGKNILVARYGLNEGYVPFIKLSDPG  153 (259)
T ss_pred             EEEcCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHhhC---CeecccCccceEEEecCccccCCceeEEeCCCC
Confidence            99999999999999862 33789999999999999999999999   999999999999999887       79999999


Q ss_pred             cceecC-------CCCcCCCcccccC--CCccccceeehhHhHHHHhhc-CCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          164 LAKLLS-------DKGCMAPECYKRT--PISVKADVYGYGIVLLETICC-WENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       164 ~~~~~~-------~~~~~ape~~~~~--~~~~~~Di~s~G~~l~el~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      .+....       ...|+|||.+...  .++.++|+||||+++|++++| ..|+.... .....   ..    ..     
T Consensus       154 ~a~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~-~~~~~---~~----~~-----  220 (259)
T cd05037         154 IPITVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLS-SSEKE---RF----YQ-----  220 (259)
T ss_pred             cccccccccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCC-chhHH---HH----Hh-----
Confidence            987632       4579999998776  688999999999999999994 66665331 11100   00    00     


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                         .....+......+.+++.+||+.+|.+|||+.+|++.|
T Consensus       221 ---~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l  258 (259)
T cd05037         221 ---DQHRLPMPDCAELANLINQCWTYDPTKRPSFRAILRDL  258 (259)
T ss_pred             ---cCCCCCCCCchHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence               11111112227889999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=1.8e-38  Score=266.18  Aligned_cols=226  Identities=22%  Similarity=0.211  Sum_probs=179.9

Q ss_pred             cCCCCCCCCcchhHHHH-----HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCH
Q 048314           29 LNDRNSPRSKSVWSCMR-----ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDL  100 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~-----~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL  100 (274)
                      ++|.|++  |.||+|..     .++|.....   .....+.+|+.++++++||||+++++++.+.+..++||||+++++|
T Consensus         2 ~ig~g~~--g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   79 (250)
T cd05085           2 LLGKGNF--GEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDF   79 (250)
T ss_pred             ccCCCCC--ceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcH
Confidence            6899999  99998832     112222211   1123477899999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----------
Q 048314          101 AYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----------  169 (274)
Q Consensus       101 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----------  169 (274)
                      .+++.. ....+++..+..++.|++.||.|+|+.   +++|+|++|+||+++.++.++++|||++....           
T Consensus        80 ~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  155 (250)
T cd05085          80 LSFLRK-KKDELKTKQLVKFALDAAAGMAYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQ  155 (250)
T ss_pred             HHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCC
Confidence            999976 345689999999999999999999999   99999999999999999999999999886432           


Q ss_pred             -CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHH
Q 048314          170 -DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLE  247 (274)
Q Consensus       170 -~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (274)
                       ...|+|||++....++.++|+||||+++|++++ |..||..... .   ...    .....     ... ...+...+.
T Consensus       156 ~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~-~---~~~----~~~~~-----~~~-~~~~~~~~~  221 (250)
T cd05085         156 IPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTN-Q---QAR----EQVEK-----GYR-MSCPQKCPD  221 (250)
T ss_pred             CcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCH-H---HHH----HHHHc-----CCC-CCCCCCCCH
Confidence             235999999988888999999999999999998 8989864311 0   000    00000     001 123334567


Q ss_pred             HHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          248 NLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       248 ~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+.+++.+||+.+|++|||+.|+++.|
T Consensus       222 ~~~~li~~~l~~~p~~Rp~~~~l~~~l  248 (250)
T cd05085         222 DVYKVMQRCWDYKPENRPKFSELQKEL  248 (250)
T ss_pred             HHHHHHHHHcccCcccCCCHHHHHHHh
Confidence            899999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.1e-38  Score=279.07  Aligned_cols=241  Identities=16%  Similarity=0.195  Sum_probs=176.3

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeC-----Ccc
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG-----SKP   88 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~   88 (274)
                      |...+.+|.|+|  |.||+|..      .++|.+.    ......++.+|+.++++++||||+++++++...     ...
T Consensus         2 y~i~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   79 (338)
T cd07859           2 YKIQEVIGKGSY--GVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDI   79 (338)
T ss_pred             eEEEEEEeecCC--eEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceE
Confidence            556778999999  99998821      1122111    112334578999999999999999999988643     247


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++|||||. ++|.+++..  ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++..
T Consensus        80 ~lv~e~~~-~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~  153 (338)
T cd07859          80 YVVFELME-SDLHQVIKA--NDDLTPEHHQFFLYQLLRALKYIHTA---NVFHRDLKPKNILANADCKLKICDFGLARVA  153 (338)
T ss_pred             EEEEecCC-CCHHHHHHh--cccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEccCcccccc
Confidence            99999995 689999875  45699999999999999999999999   9999999999999999999999999998642


Q ss_pred             --------------CCCCcCCCccccc--CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH-------HH
Q 048314          169 --------------SDKGCMAPECYKR--TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV-------YK  225 (274)
Q Consensus       169 --------------~~~~~~ape~~~~--~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~-------~~  225 (274)
                                    ++..|+|||.+..  ..++.++|||||||++|+|++|+.||...........+....       ..
T Consensus       154 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  233 (338)
T cd07859         154 FNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETIS  233 (338)
T ss_pred             ccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHH
Confidence                          2567999998865  578899999999999999999999996432110000000000       00


Q ss_pred             HHhhhhh----hhhhcCCccC-----HHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          226 CFINREL----NKLVRGTEVD-----KKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       226 ~~~~~~~----~~~~~~~~~~-----~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+...    ..+......+     ...+..+.+++.+||+.||++|||++|+++
T Consensus       234 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~  289 (338)
T cd07859         234 RVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALA  289 (338)
T ss_pred             HhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhc
Confidence            0000000    0000000010     123456889999999999999999999985

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=2.1e-38  Score=272.30  Aligned_cols=242  Identities=17%  Similarity=0.187  Sum_probs=185.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHHH----------------------HHHHhcCC---CCCCcHHHHHHHHhcCCCCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMRA----------------------LMATVNSP---YSPSRPLTLTSIVSRVSWTTD   75 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~~----------------------~~~~~~~~---~~~~~~~~e~~~l~~l~h~ni   75 (274)
                      .++|.....+|+|+|  |.||++...                      ++|.....   ...+.+.+|++++++++||||
T Consensus         4 ~~~~~~~~~lg~G~~--g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i   81 (296)
T cd05051           4 RQPLNFVEKLGEGQF--GEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNI   81 (296)
T ss_pred             hhhCcccccccCCCC--ccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCE
Confidence            456777899999999  999986211                      11211111   123456789999999999999


Q ss_pred             ceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCC---------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCC
Q 048314           76 IEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSA---------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKP  146 (274)
Q Consensus        76 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~  146 (274)
                      +++++++..++..+++|||+++++|.+++....         ...+++..++.++.|++.||+|||+.   +++|+||||
T Consensus        82 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~---~i~H~dlkp  158 (296)
T cd05051          82 ARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NFVHRDLAT  158 (296)
T ss_pred             eEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc---Cccccccch
Confidence            999999999999999999999999999997632         12589999999999999999999999   999999999


Q ss_pred             CceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh--cCCCccccC
Q 048314          147 QNILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC--CWENMEIDA  211 (274)
Q Consensus       147 ~nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~--g~~p~~~~~  211 (274)
                      +||+++.++.++++|||.+....             +..|+|||.+....++.++||||||+++|+|++  |..||....
T Consensus       159 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~  238 (296)
T cd05051         159 RNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLT  238 (296)
T ss_pred             hceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcC
Confidence            99999999999999999986432             346999999988889999999999999999988  667774321


Q ss_pred             CChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          212 SKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                         ... .................   ...+...+.++.+++.+||+.||++|||+.||++.|
T Consensus       239 ---~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L  294 (296)
T cd05051         239 ---DQQ-VIENAGHFFRDDGRQIY---LPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFL  294 (296)
T ss_pred             ---hHH-HHHHHHhcccccccccc---CCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHh
Confidence               111 11111111000000000   012334557899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.6e-38  Score=271.56  Aligned_cols=241  Identities=19%  Similarity=0.203  Sum_probs=181.6

Q ss_pred             ccccccCCCCCCCCcchhHHH----------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeC--Ccc
Q 048314           24 FCRSSLNDRNSPRSKSVWSCM----------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--SKP   88 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~----------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~   88 (274)
                      +.....+|.|+|  |.||.+.          ..++|.....   ...+.+.+|+.++++++||||+++++++.+.  ...
T Consensus         6 ~~~~~~lg~g~~--g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (283)
T cd05080           6 LKKIRVLGEGHF--GKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGL   83 (283)
T ss_pred             ceeceecccCCC--cEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceE
Confidence            366788999999  9996531          1112222211   1234577999999999999999999998653  357


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      +++|||+++++|.+++..   ..+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++...
T Consensus        84 ~lv~e~~~~~~l~~~~~~---~~l~~~~~~~i~~~l~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~  157 (283)
T cd05080          84 QLIMEYVPLGSLRDYLPK---HKLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAV  157 (283)
T ss_pred             EEEecCCCCCCHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccChheEEEcCCCcEEEeeccccccc
Confidence            899999999999999975   3599999999999999999999999   9999999999999999999999999998653


Q ss_pred             C--------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 S--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .              ...|++||.+....++.++|+||||+++++|++|..|+.........  ...............+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~  235 (283)
T cd05080         158 PEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEE--MIGPKQGQMTVVRLIE  235 (283)
T ss_pred             CCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhh--hhcccccccchhhhhh
Confidence            2              23489999998888899999999999999999999998643211110  0000000000001111


Q ss_pred             hhcCC---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGT---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+..   +.+...+..+.+++..||+.||++|||++++++.|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l  278 (283)
T cd05080         236 LLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPIL  278 (283)
T ss_pred             hhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHH
Confidence            11111   23445668899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=3.3e-38  Score=267.00  Aligned_cols=237  Identities=17%  Similarity=0.200  Sum_probs=187.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcC-----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS-----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.+|.|.|  |.||+|..      .++|....     ......+.+|+.++++++||||+++++++.+.+..++
T Consensus         2 ~~~~i~~~l~~g~~--~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   79 (267)
T cd08228           2 ANFQIEKKIGRGQF--SEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNI   79 (267)
T ss_pred             cceeeeeeeccCCC--eeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEE
Confidence            46778899999999  99998821      11221111     1122356789999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           91 EAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||+++|+|.+++...  ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+...
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~  156 (267)
T cd08228          80 VLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFF  156 (267)
T ss_pred             EEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCCHHHEEEcCCCCEEECccccceec
Confidence            99999999999998643  234589999999999999999999999   9999999999999999999999999987653


Q ss_pred             C-----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 S-----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 ~-----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                      .           +..|+|||.+....++.++|+||||+++|+|++|..||.........  ...    .     ......
T Consensus       157 ~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~--~~~----~-----~~~~~~  225 (267)
T cd08228         157 SSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFS--LCQ----K-----IEQCDY  225 (267)
T ss_pred             cchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHH--HHH----H-----HhcCCC
Confidence            2           45699999998888889999999999999999999998643221111  100    0     111111


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+...+..+.+++.+||+.+|++|||+.+|++.|
T Consensus       226 ~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~  262 (267)
T cd08228         226 PPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIA  262 (267)
T ss_pred             CCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHH
Confidence            1122335567899999999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-38  Score=253.50  Aligned_cols=233  Identities=15%  Similarity=0.147  Sum_probs=183.6

Q ss_pred             hhccccccCCCCCCCCcchhHH------HHHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC------MRALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +.|+.-..||+|.|  +.||.+      ..-+.+.++.+    .+.++..+|+.+-+.|+||||+++.....+.+..+||
T Consensus        11 d~y~l~e~igkG~F--SvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylv   88 (355)
T KOG0033|consen   11 DNYDVKEELGKGAF--SVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   88 (355)
T ss_pred             hhhhHHHHHccCch--HHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEE
Confidence            45555677999999  999998      22223322221    3556667999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEeccccceec
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGLAKLL  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~d~g~~~~~  168 (274)
                      +|+|.|++|..-+..+  .-+++...-..+.||+.||.|+|++   +|+|||+||.|+++..   .--+||+|||++...
T Consensus        89 Fe~m~G~dl~~eIV~R--~~ySEa~aSH~~rQiLeal~yCH~n---~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l  163 (355)
T KOG0033|consen   89 FDLVTGGELFEDIVAR--EFYSEADASHCIQQILEALAYCHSN---GIVHRDLKPENLLLASKAKGAAVKLADFGLAIEV  163 (355)
T ss_pred             EecccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeeeeccCCCceeecccceEEEe
Confidence            9999999997666542  3467888888999999999999999   9999999999999864   345899999998654


Q ss_pred             ----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          169 ----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       169 ----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                ++|+|||||++...+|+..+|||+.|++||-++.|.+||......    .+.    ..+..+.   +--+
T Consensus       164 ~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~----rly----e~I~~g~---yd~~  232 (355)
T KOG0033|consen  164 NDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH----RLY----EQIKAGA---YDYP  232 (355)
T ss_pred             CCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHH----HHH----HHHhccc---cCCC
Confidence                      388999999999999999999999999999999999999753111    111    1111111   1011


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+.....+++.++|+++||..||.+|.|+.|.++
T Consensus       233 ~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~  266 (355)
T KOG0033|consen  233 SPEWDTVTPEAKSLIRRMLTVNPKKRITADEALK  266 (355)
T ss_pred             CcccCcCCHHHHHHHHHHhccChhhhccHHHHhC
Confidence            1234456788999999999999999999999875

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.8e-39  Score=284.92  Aligned_cols=232  Identities=16%  Similarity=0.104  Sum_probs=179.9

Q ss_pred             hccccccCCCCCCCCcchhHHH-------HHHHH----HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM-------RALMA----TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~-------~~~~~----~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|...+.+|.|+|  |.||++.       +++|.    ........+.+.+|++++++++||||+++++++.+.+..++|
T Consensus         2 ~y~~~~~lG~G~~--g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv   79 (377)
T cd05629           2 DFHTVKVIGKGAF--GEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLI   79 (377)
T ss_pred             CceEeEEEeecCC--EEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEE
Confidence            5777888999999  9999871       11111    111112334567899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee----
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL----  167 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~----  167 (274)
                      |||+++|+|.+++..  .+.+++.....++.|++.||.|||+.   +++||||||+||+++.++.++|+|||+++.    
T Consensus        80 ~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~ql~~aL~~LH~~---givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~  154 (377)
T cd05629          80 MEFLPGGDLMTMLIK--YDTFSEDVTRFYMAECVLAIEAVHKL---GFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQ  154 (377)
T ss_pred             EeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEEeecccccccccc
Confidence            999999999999975  45789999999999999999999999   999999999999999999999999998741    


Q ss_pred             ------------------------------------------------------cCCCCcCCCcccccCCCccccceeeh
Q 048314          168 ------------------------------------------------------LSDKGCMAPECYKRTPISVKADVYGY  193 (274)
Q Consensus       168 ------------------------------------------------------~~~~~~~ape~~~~~~~~~~~Di~s~  193 (274)
                                                                            .+++.|+|||++....++.++|||||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSl  234 (377)
T cd05629         155 HDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSL  234 (377)
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEec
Confidence                                                                  24667999999988889999999999


Q ss_pred             hHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCC---CChhhH
Q 048314          194 GIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALR---PSMKCV  270 (274)
Q Consensus       194 G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R---ps~~ev  270 (274)
                      ||++|||++|..||.....   ...+.    . .... ...+..+  .....+..+.+++.+||. +|.+|   ||+.|+
T Consensus       235 Gvil~elltG~~Pf~~~~~---~~~~~----~-i~~~-~~~~~~p--~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~  302 (377)
T cd05629         235 GAIMFECLIGWPPFCSENS---HETYR----K-IINW-RETLYFP--DDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEI  302 (377)
T ss_pred             chhhhhhhcCCCCCCCCCH---HHHHH----H-HHcc-CCccCCC--CCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHH
Confidence            9999999999999964311   10000    0 0000 0000000  111345678999999997 67765   599998


Q ss_pred             Hhh
Q 048314          271 VMM  273 (274)
Q Consensus       271 l~~  273 (274)
                      ++.
T Consensus       303 l~h  305 (377)
T cd05629         303 KSH  305 (377)
T ss_pred             hcC
Confidence            763

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.8e-38  Score=269.97  Aligned_cols=235  Identities=21%  Similarity=0.274  Sum_probs=185.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHHH-----------HHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMRA-----------LMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~~-----------~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      .++|.....+|.|+|  |.||+|...           ++|......   ....+.+|+.+++.++||||+++++++.+..
T Consensus         5 ~~~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~   82 (277)
T cd05032           5 REKITLIRELGQGSF--GMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQ   82 (277)
T ss_pred             hHHeeEEeEecCCCC--ceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCC
Confidence            457777889999999  999987321           122222111   1234678999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 048314           87 KPSTEAALDLPWDLAYIIFCSA--------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK  158 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~k  158 (274)
                      ..++||||+++|+|.+++....        ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++
T Consensus        83 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~di~p~nill~~~~~~k  159 (277)
T cd05032          83 PTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KFVHRDLAARNCMVAEDLTVK  159 (277)
T ss_pred             CcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccChheEEEcCCCCEE
Confidence            9999999999999999997532        12378999999999999999999999   999999999999999999999


Q ss_pred             EeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHH
Q 048314          159 ISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVY  224 (274)
Q Consensus       159 l~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~  224 (274)
                      |+|||.++...             +..|+|||.+....++.++|+||||+++||+++ |..||.... .   ......  
T Consensus       160 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-~---~~~~~~--  233 (277)
T cd05032         160 IGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLS-N---EEVLKF--  233 (277)
T ss_pred             ECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCC-H---HHHHHH--
Confidence            99999875321             346999999988888999999999999999998 888885321 1   111111  


Q ss_pred             HHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          225 KCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .....      ....+...+..+.+++.+||+.+|++|||+.++++.|
T Consensus       234 --~~~~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l  275 (277)
T cd05032         234 --VIDGG------HLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSL  275 (277)
T ss_pred             --HhcCC------CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHh
Confidence              11110      0123444578899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.5e-38  Score=276.50  Aligned_cols=223  Identities=17%  Similarity=0.132  Sum_probs=178.6

Q ss_pred             ccCCCCCCCCcchhHHHH------HHHHH-----hcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR------ALMAT-----VNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------~~~~~-----~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.+|.|+|  |.||++..      .++|.     .......+.+..|..++..+ +||||+++++++.+.+..++||||+
T Consensus         1 ~~lG~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   78 (318)
T cd05570           1 KVLGKGSF--GKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYV   78 (318)
T ss_pred             CeeeeCCC--eEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCC
Confidence            36899999  99998811      11111     11222344567888999887 6999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      ++|+|.+++..  ...+++.....++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++...       
T Consensus        79 ~~~~L~~~~~~--~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~  153 (318)
T cd05570          79 NGGDLMFHIQR--SGRFDEPRARFYAAEIVLGLQFLHER---GIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTT  153 (318)
T ss_pred             CCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCcc
Confidence            99999999875  45799999999999999999999999   9999999999999999999999999987542       


Q ss_pred             ----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          169 ----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       169 ----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                          ++..|+|||++.+..++.++|+|||||++|+|++|..||....   .. ...    ......       ....+..
T Consensus       154 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~---~~-~~~----~~i~~~-------~~~~~~~  218 (318)
T cd05570         154 STFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDD---ED-ELF----QSILED-------EVRYPRW  218 (318)
T ss_pred             cceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCC---HH-HHH----HHHHcC-------CCCCCCc
Confidence                3567999999998899999999999999999999999996431   11 110    000000       1123444


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCh-----hhHHh
Q 048314          245 NLENLVKVGLWCVQDEPALRPSM-----KCVVM  272 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~-----~evl~  272 (274)
                      .+..+.+++.+||+.||++|||+     .++++
T Consensus       219 ~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         219 LSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             CCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence            56788999999999999999999     77764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-38  Score=268.48  Aligned_cols=232  Identities=17%  Similarity=0.214  Sum_probs=181.4

Q ss_pred             ccccccCCCCCCCCcchhHHHH---------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc---
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK---   87 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~---   87 (274)
                      |...+.+|.|+|  |.||+|..         .++|.....    ...+.+.+|+..++.++||||+++++++.+.+.   
T Consensus         1 ~~~~~~lg~G~~--g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   78 (273)
T cd05035           1 LKLGKILGEGEF--GSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQK   78 (273)
T ss_pred             CccccccCcCCC--ceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCcccc
Confidence            344678999999  99998731         112222211    112457789999999999999999999876554   


Q ss_pred             ---ceEEEEeCCCCCHHHHHHhC----CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 048314           88 ---PSTEAALDLPWDLAYIIFCS----AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKIS  160 (274)
Q Consensus        88 ---~~lv~e~~~~gsL~~~l~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~  160 (274)
                         .++++||+++|+|..++...    ....+++.....++.|++.||.|||+.   +++|+|+||+||+++.++.+|++
T Consensus        79 ~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~  155 (273)
T cd05035          79 IPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVA  155 (273)
T ss_pred             CcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchheEEECCCCeEEEC
Confidence               79999999999999998643    223589999999999999999999999   99999999999999999999999


Q ss_pred             ccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHH
Q 048314          161 DFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKC  226 (274)
Q Consensus       161 d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~  226 (274)
                      |||+++...             +..|++||.+....++.++|+||||+++|||++ |..||.....    ..+...    
T Consensus       156 dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~----~~~~~~----  227 (273)
T cd05035         156 DFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN----HEIYDY----  227 (273)
T ss_pred             CccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH----HHHHHH----
Confidence            999987532             246899999988889999999999999999999 8888853311    111111    


Q ss_pred             HhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          227 FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+.      ....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       228 ~~~~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l  269 (273)
T cd05035         228 LRHGN------RLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVL  269 (273)
T ss_pred             HHcCC------CCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            11110      1123445677899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=4e-39  Score=295.80  Aligned_cols=228  Identities=18%  Similarity=0.156  Sum_probs=184.5

Q ss_pred             hccccccCCCCCCCCcchhHH-------HHHHHHHhcC-CCCCCcHHHHHHHHhcCC-CCccceEeEE-EEe---C---C
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC-------MRALMATVNS-PYSPSRPLTLTSIVSRVS-WTTDIEVSSV-AMR---G---S   86 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~-~~~~~~~~~e~~~l~~l~-h~niv~l~~~-~~~---~---~   86 (274)
                      .....++|-+|||  +.||.+       ..+.|+.+.. ....+...+||.+|+.|+ |+|||.+++. ...   .   -
T Consensus        38 ~v~V~~vLAEGGF--a~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   38 RVTVEKVLAEGGF--AQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             EEEEEEEEccCCc--EEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            4445788999999  999988       1222333322 233445579999999998 9999999993 221   1   2


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      +.+|.||||.+|+|-|+|..+-...|++.++++|+.|+++|+++||.. .++|||||||.+|+|+..++..||||||.+.
T Consensus       116 EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSat  194 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSAT  194 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCcccccc
Confidence            568999999999999999976556699999999999999999999986 6779999999999999999999999999885


Q ss_pred             ecC--------------------CCCcCCCccc---ccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH
Q 048314          167 LLS--------------------DKGCMAPECY---KRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV  223 (274)
Q Consensus       167 ~~~--------------------~~~~~ape~~---~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~  223 (274)
                      ...                    |+.|++||++   .+.+.+.|+|||+|||+||-|..+..||...+.           
T Consensus       195 t~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~-----------  263 (738)
T KOG1989|consen  195 TKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK-----------  263 (738)
T ss_pred             cccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc-----------
Confidence            322                    7789999987   355789999999999999999999999974311           


Q ss_pred             HHHHhhhhhhhhhcCC---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          224 YKCFINRELNKLVRGT---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       224 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                               ..++...   +.....+..|.+||+.||+.||++||++-||++.
T Consensus       264 ---------laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~  307 (738)
T KOG1989|consen  264 ---------LAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEE  307 (738)
T ss_pred             ---------eeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHH
Confidence                     1122222   2334788999999999999999999999999875

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.8e-39  Score=284.49  Aligned_cols=232  Identities=16%  Similarity=0.120  Sum_probs=182.2

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhc-----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVN-----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.||.|+|  |.||++.      ..++|.+.     .......+.+|+.++..++||||+++++++.+.+..++
T Consensus         1 ~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~l   78 (364)
T cd05599           1 DDFESIKVIGRGAF--GEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYL   78 (364)
T ss_pred             CCceEEEEEEecCC--EEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEE
Confidence            36778899999999  9999871      11122111     11233446789999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee---
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL---  167 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~---  167 (274)
                      ||||+++|+|.+++..  ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++..   
T Consensus        79 v~E~~~~g~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  153 (364)
T cd05599          79 IMEYLPGGDMMTLLMK--KDTFTEEETRFYIAETILAIDSIHKL---GYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKK  153 (364)
T ss_pred             EECCCCCcHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEeecccceeccc
Confidence            9999999999999975  45699999999999999999999999   999999999999999999999999998753   


Q ss_pred             ----------------------------------------------cCCCCcCCCcccccCCCccccceeehhHhHHHHh
Q 048314          168 ----------------------------------------------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETI  201 (274)
Q Consensus       168 ----------------------------------------------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~  201 (274)
                                                                    .+++.|+|||++....++.++|||||||++|||+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~  233 (364)
T cd05599         154 SHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEML  233 (364)
T ss_pred             cccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhh
Confidence                                                          2467899999998888999999999999999999


Q ss_pred             hcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCC---hhhHHh
Q 048314          202 CCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPS---MKCVVM  272 (274)
Q Consensus       202 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps---~~evl~  272 (274)
                      +|..||.....  .. ...    . ..+.. .....  ..+...++.+.+++.+|+. +|.+|++   +.|+++
T Consensus       234 ~G~~Pf~~~~~--~~-~~~----~-i~~~~-~~~~~--~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~  295 (364)
T cd05599         234 VGYPPFCSDNP--QE-TYR----K-IINWK-ETLQF--PDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKS  295 (364)
T ss_pred             cCCCCCCCCCH--HH-HHH----H-HHcCC-CccCC--CCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhc
Confidence            99999964311  10 000    0 00000 00000  1111345678899999996 9999998   888875

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1e-38  Score=255.03  Aligned_cols=243  Identities=19%  Similarity=0.144  Sum_probs=191.8

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHH-------HHHHHHHhcCC-CCCCcHHHHHHHHhcCCCCccceEeEEEEeC----
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSP-YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG----   85 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~----   85 (274)
                      ....++|.....+|.|||  +-||.+       ..+.|++.-.. ++.+..++|++..++++|||++++++.+..+    
T Consensus        17 ~In~~Ryri~~~LgeGGf--sfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~   94 (302)
T KOG2345|consen   17 IINNKRYRIQRLLGEGGF--SFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDG   94 (302)
T ss_pred             EEcCceEEEeeeecCCCc--eeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccC
Confidence            334567888899999999  999988       45666655544 6677778999999999999999999887532    


Q ss_pred             -CcceEEEEeCCCCCHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           86 -SKPSTEAALDLPWDLAYIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        86 -~~~~lv~e~~~~gsL~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                       ...||+++|...|||.+.+....  +..+++.+.+.++.+++.||.+||+. .+++.||||||.||++.+.+.+++.||
T Consensus        95 ~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~  173 (302)
T KOG2345|consen   95 KHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDL  173 (302)
T ss_pred             ceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEec
Confidence             34899999999999999998763  33589999999999999999999998 345999999999999999999999999


Q ss_pred             ccceecC--------------------CCCcCCCccccc---CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHH
Q 048314          163 GLAKLLS--------------------DKGCMAPECYKR---TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL  219 (274)
Q Consensus       163 g~~~~~~--------------------~~~~~ape~~~~---~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~  219 (274)
                      |.+....                    +..|+|||.+.-   ...+.++|||||||++|+|+.|..||......-  ..+
T Consensus       174 GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~G--gSl  251 (302)
T KOG2345|consen  174 GSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQG--GSL  251 (302)
T ss_pred             cCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcC--CeE
Confidence            9987543                    567999998854   456899999999999999999999996431100  000


Q ss_pred             HHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .    -...+   .++.-|  .....++.+.+++.+|++.||.+||++.+++..+
T Consensus       252 a----LAv~n---~q~s~P--~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~  297 (302)
T KOG2345|consen  252 A----LAVQN---AQISIP--NSSRYSEALHQLIKSMLQVDPNQRPTIPELLSKL  297 (302)
T ss_pred             E----Eeeec---cccccC--CCCCccHHHHHHHHHHhcCCcccCCCHHHHHHHH
Confidence            0    00000   112222  2223778999999999999999999999998764

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=1.9e-38  Score=276.07  Aligned_cols=218  Identities=17%  Similarity=0.164  Sum_probs=174.4

Q ss_pred             ccCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.+|.|+|  |.||++..      .++|.+     ......+.+..|..++..+ +||||+++++++.+.+..++||||+
T Consensus         1 ~~lg~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~   78 (320)
T cd05590           1 RVLGKGSF--GKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFV   78 (320)
T ss_pred             CeeeeCCC--eEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCC
Confidence            36899999  99998811      111111     1122344567888888876 5999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      ++|+|.+++..  ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...       
T Consensus        79 ~~g~L~~~i~~--~~~l~~~~~~~~~~ql~~~L~~lH~~---~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~  153 (320)
T cd05590          79 NGGDLMFHIQK--SRRFDEARARFYAAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTT  153 (320)
T ss_pred             CCchHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcc
Confidence            99999999975  45799999999999999999999999   9999999999999999999999999987642       


Q ss_pred             ----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          169 ----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       169 ----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                          +++.|+|||.+....++.++|+|||||++|+|++|+.||.....    ..+..    .....       ....+..
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~----~~~~~----~i~~~-------~~~~~~~  218 (320)
T cd05590         154 STFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENE----DDLFE----AILND-------EVVYPTW  218 (320)
T ss_pred             cccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH----HHHHH----HHhcC-------CCCCCCC
Confidence                36789999999888899999999999999999999999964311    11111    01110       1123334


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCh
Q 048314          245 NLENLVKVGLWCVQDEPALRPSM  267 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~  267 (274)
                      .+.++.+++.+||+.||++||++
T Consensus       219 ~~~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         219 LSQDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             CCHHHHHHHHHHcccCHHHCCCC
Confidence            56788999999999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=2.3e-38  Score=273.36  Aligned_cols=237  Identities=18%  Similarity=0.185  Sum_probs=187.1

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH-------------HHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEE
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR-------------ALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSV   81 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~-------------~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~   81 (274)
                      ....+|.....+|.|+|  |.||++..             .++|.....   ...+++.+|+.+++.+ +||||++++++
T Consensus        12 ~~~~~~~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~   89 (304)
T cd05101          12 FSRDKLTLGKPLGEGCF--GQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGA   89 (304)
T ss_pred             ccHHHeeecceeeccCC--ceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEE
Confidence            34567888899999999  99997731             122222211   2234577999999999 79999999999


Q ss_pred             EEeCCcceEEEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC
Q 048314           82 AMRGSKPSTEAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQ  147 (274)
Q Consensus        82 ~~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~  147 (274)
                      +...+..+++|||+++|+|.+++....              ...+++..+..++.|++.||.|||+.   +++|+||||+
T Consensus        90 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~  166 (304)
T cd05101          90 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ---KCIHRDLAAR  166 (304)
T ss_pred             EecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC---Ceeecccccc
Confidence            999999999999999999999998632              23578999999999999999999999   9999999999


Q ss_pred             ceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCC
Q 048314          148 NILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASK  213 (274)
Q Consensus       148 nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~  213 (274)
                      ||+++.++.++|+|||.+....             +..|+|||.+....++.++||||||+++|++++ |..||...  +
T Consensus       167 Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~--~  244 (304)
T cd05101         167 NVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--P  244 (304)
T ss_pred             eEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC--C
Confidence            9999999999999999986542             245999999988889999999999999999998 77777532  1


Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          214 PEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...  +.    .......      ....+...+..+.+++.+||+.+|++|||+.|+++.|
T Consensus       245 ~~~--~~----~~~~~~~------~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  293 (304)
T cd05101         245 VEE--LF----KLLKEGH------RMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDL  293 (304)
T ss_pred             HHH--HH----HHHHcCC------cCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHH
Confidence            111  10    1111110      0113345667899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=1.6e-38  Score=270.74  Aligned_cols=236  Identities=19%  Similarity=0.202  Sum_probs=185.8

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHHH-----------HHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMRA-----------LMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~~-----------~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      .+++|...+.+|.|++  |.||++...           ++|.....   .....|.+|+.++++++|+||+++++++.+.
T Consensus         4 ~~~~~~~~~~lg~g~~--g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   81 (277)
T cd05036           4 PRDSITLLRALGHGAF--GEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFER   81 (277)
T ss_pred             CHHHcEeeeECCCCCC--CcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC
Confidence            3577888999999999  999988321           11211111   1123578899999999999999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC---cE
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAE-----RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TA  157 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~---~~  157 (274)
                      +..++||||+++++|.+++.....     ..+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++   .+
T Consensus        82 ~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~nil~~~~~~~~~~  158 (277)
T cd05036          82 LPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN---HFIHRDIAARNCLLTCKGPGRVA  158 (277)
T ss_pred             CCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchheEEEeccCCCcce
Confidence            999999999999999999976421     2589999999999999999999999   999999999999998654   68


Q ss_pred             EEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHH
Q 048314          158 KISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWV  223 (274)
Q Consensus       158 kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~  223 (274)
                      +++|||.++...             ...|+|||.+....++.++|||||||++|+|++ |..||.....   .. +..  
T Consensus       159 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~---~~-~~~--  232 (277)
T cd05036         159 KIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTN---QE-VME--  232 (277)
T ss_pred             EeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH---HH-HHH--
Confidence            999999986532             235999999988889999999999999999996 8899864311   11 111  


Q ss_pred             HHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          224 YKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .....      .....+...+..+.+++.+||+.||++|||+.+|++.|
T Consensus       233 --~~~~~------~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l  275 (277)
T cd05036         233 --FVTGG------GRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERI  275 (277)
T ss_pred             --HHHcC------CcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHh
Confidence              00000      01123344567899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.5e-38  Score=271.12  Aligned_cols=242  Identities=18%  Similarity=0.198  Sum_probs=183.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHHH--------------------HHHHhcCC---CCCCcHHHHHHHHhcCCCCccce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMRA--------------------LMATVNSP---YSPSRPLTLTSIVSRVSWTTDIE   77 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~~--------------------~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~   77 (274)
                      .++|...+.+|+|+|  |.||.+...                    ++|.....   ...+.+.+|++++++++|+|+++
T Consensus         4 ~~~~~~~~~lg~G~~--g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~   81 (295)
T cd05097           4 RQQLRLKEKLGEGQF--GEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIR   81 (295)
T ss_pred             hHhCeehhccCCCCC--ceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCe
Confidence            356777888999999  999987321                    11212111   11235778999999999999999


Q ss_pred             EeEEEEeCCcceEEEEeCCCCCHHHHHHhCC----------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC
Q 048314           78 VSSVAMRGSKPSTEAALDLPWDLAYIIFCSA----------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQ  147 (274)
Q Consensus        78 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~  147 (274)
                      +++++...+..++||||+++++|.+++....          ...+++..+..++.|++.||.|||+.   +++|+||||+
T Consensus        82 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~  158 (295)
T cd05097          82 LLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL---NFVHRDLATR  158 (295)
T ss_pred             EEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc---CeeccccChh
Confidence            9999999999999999999999999996521          12378999999999999999999999   9999999999


Q ss_pred             ceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh--cCCCccccCC
Q 048314          148 NILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC--CWENMEIDAS  212 (274)
Q Consensus       148 nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~--g~~p~~~~~~  212 (274)
                      ||+++.++.+|++|||++....             +..|+|||.+....++.++|+||||+++++|++  |..||.... 
T Consensus       159 Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~-  237 (295)
T cd05097         159 NCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLS-  237 (295)
T ss_pred             hEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccC-
Confidence            9999999999999999986432             346999999988889999999999999999988  556665321 


Q ss_pred             ChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          213 KPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        ........ .............   ..+...+..+.+++.+||+.||++|||+++|++.|
T Consensus       238 --~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l  293 (295)
T cd05097         238 --DEQVIENT-GEFFRNQGRQIYL---SQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFL  293 (295)
T ss_pred             --hHHHHHHH-HHhhhhccccccC---CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence              11111110 0000000000000   12223457899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=2.3e-38  Score=274.74  Aligned_cols=236  Identities=19%  Similarity=0.200  Sum_probs=186.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH-------------HHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR-------------ALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVA   82 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~-------------~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~   82 (274)
                      ...+|...+.+|.|++  |.||++..             .++|.....   .....+.+|+.+++++ +||||+++++++
T Consensus        10 ~~~~~~~~~~lg~G~~--g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~   87 (314)
T cd05099          10 PRDRLVLGKPLGEGCF--GQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVC   87 (314)
T ss_pred             cHHHeeeeeeecCCCc--ccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEE
Confidence            3467788899999999  99998731             122222221   1123567899999999 599999999999


Q ss_pred             EeCCcceEEEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCc
Q 048314           83 MRGSKPSTEAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN  148 (274)
Q Consensus        83 ~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~n  148 (274)
                      .+.+..+++|||+++|+|.+++....              ...+++..+..++.|++.||.|||++   +++|+||||+|
T Consensus        88 ~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~N  164 (314)
T cd05099          88 TQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR---RCIHRDLAARN  164 (314)
T ss_pred             ccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC---Ceeecccccee
Confidence            99999999999999999999997632              23589999999999999999999999   99999999999


Q ss_pred             eEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCCh
Q 048314          149 ILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKP  214 (274)
Q Consensus       149 il~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~  214 (274)
                      |+++.++.++|+|||.++...             +..|+|||.+....++.++|+||||+++|+|++ |..||....  .
T Consensus       165 ill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~--~  242 (314)
T cd05099         165 VLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIP--V  242 (314)
T ss_pred             EEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCC--H
Confidence            999999999999999986432             135999999988889999999999999999998 888885331  1


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          215 EEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..  +..    ......      ....+...+.++.+++.+||+.||++|||+.++++.|
T Consensus       243 ~~--~~~----~~~~~~------~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l  290 (314)
T cd05099         243 EE--LFK----LLREGH------RMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEAL  290 (314)
T ss_pred             HH--HHH----HHHcCC------CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            11  111    111110      0123445567889999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=1.8e-38  Score=269.01  Aligned_cols=233  Identities=20%  Similarity=0.206  Sum_probs=185.9

Q ss_pred             hhccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      ++|.....+|.|+|  |.||+|..         .+++.....   ...+.+.+|+.++++++||||+++++++.+++..+
T Consensus         4 ~~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   81 (267)
T cd05066           4 SCIKIEKVIGAGEF--GEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVM   81 (267)
T ss_pred             HHeEeeeeecccCC--CceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccE
Confidence            56777899999999  99998731         112222211   12345788999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +||||+++++|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++++|||.+....
T Consensus        82 lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd05066          82 IVTEYMENGSLDAFLRK-HDGQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVLE  157 (267)
T ss_pred             EEEEcCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeehhhchhcEEECCCCeEEeCCCCcccccc
Confidence            99999999999999986 345689999999999999999999999   99999999999999999999999999886532


Q ss_pred             --------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          170 --------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       170 --------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                                    +..|++||.+....++.++|+||||+++|++++ |..||.....  ..  ...    ...+.    
T Consensus       158 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~--~~--~~~----~~~~~----  225 (267)
T cd05066         158 DDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSN--QD--VIK----AIEEG----  225 (267)
T ss_pred             cccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCH--HH--HHH----HHhCC----
Confidence                          235899999988889999999999999999886 9999864311  10  111    11111    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       . ..+.+...+..+.+++.+||+.+|.+|||+.++++.|
T Consensus       226 -~-~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  263 (267)
T cd05066         226 -Y-RLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSIL  263 (267)
T ss_pred             -C-cCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHH
Confidence             0 0122334567889999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=4.6e-38  Score=269.32  Aligned_cols=233  Identities=21%  Similarity=0.222  Sum_probs=183.6

Q ss_pred             ccccccCCCCCCCCcchhHHH------HHHHHHhcC-----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCM------RALMATVNS-----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      |...+++|+|+|  |.||++.      ..++|.+..     ....+.+.+|+.++++++|+||+++++.+.+.+..++||
T Consensus         2 f~~~~~ig~G~~--g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~   79 (285)
T cd05630           2 FRQYRVLGKGGF--GEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVL   79 (285)
T ss_pred             ceeeEEeecCCC--eEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEE
Confidence            556788999999  9999871      111221111     112234678999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      ||+++++|.+++.......+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++++|||++...    
T Consensus        80 e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~  156 (285)
T cd05630          80 TLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ  156 (285)
T ss_pred             EecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeccceeecCCCc
Confidence            999999999999764455699999999999999999999999   9999999999999999999999999988643    


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            ++..|+|||.+....++.++|+||||+++|+|++|..||................    ..  ..     ...+
T Consensus       157 ~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~----~~--~~-----~~~~  225 (285)
T cd05630         157 TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLV----KE--VQ-----EEYS  225 (285)
T ss_pred             cccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhh----hh--hh-----hhcC
Confidence                  2567999999988889999999999999999999999997532211111111100    00  00     0123


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCC-----hhhHHh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPS-----MKCVVM  272 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps-----~~evl~  272 (274)
                      ...+..+.+++..||+.||++|||     +.|+++
T Consensus       226 ~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         226 EKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKE  260 (285)
T ss_pred             ccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence            344567899999999999999999     788876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=3.1e-38  Score=267.18  Aligned_cols=237  Identities=17%  Similarity=0.213  Sum_probs=186.5

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhc-----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN-----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.+|.|++  |.||++..      .++|...     .....+++.+|+.+++.++||||+++++++.+++..++
T Consensus         2 ~~y~~~~~ig~g~~--g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~   79 (267)
T cd08229           2 ANFRIEKKIGRGQF--SEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI   79 (267)
T ss_pred             chhhhhhhhcccCC--eEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEE
Confidence            45677888999999  99998831      1122111     11223467789999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           91 EAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      +|||+++++|.+++...  ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+...
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~  156 (267)
T cd08229          80 VLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFF  156 (267)
T ss_pred             EEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEECcchhhhcc
Confidence            99999999999998742  234689999999999999999999999   9999999999999999999999999987543


Q ss_pred             -----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 -----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 -----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                                 ++..|+|||.+....++.++|+||||+++|+|++|..||........  ...    .     .......
T Consensus       157 ~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~--~~~----~-----~~~~~~~  225 (267)
T cd08229         157 SSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY--SLC----K-----KIEQCDY  225 (267)
T ss_pred             ccCCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHH--HHh----h-----hhhcCCC
Confidence                       24569999999888889999999999999999999999864321110  000    0     1111111


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+...+..+.+++.+||+.||++|||+.+|++.|
T Consensus       226 ~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~  262 (267)
T cd08229         226 PPLPSDHYSEELRQLVNMCINPDPEKRPDITYVYDVA  262 (267)
T ss_pred             CCCCcccccHHHHHHHHHhcCCCcccCCCHHHHHHHH
Confidence            1122334667899999999999999999999887754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=1.9e-38  Score=270.47  Aligned_cols=233  Identities=15%  Similarity=0.162  Sum_probs=183.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH----------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR----------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      .++|...+.+|.|+|  |.||+|..          .++|.....   ...+.+.+|+.+++.++||||+++++++.. ..
T Consensus         6 ~~~~~~~~~lg~G~~--g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~   82 (279)
T cd05109           6 ETELKKVKVLGSGAF--GTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-ST   82 (279)
T ss_pred             hhheeeeeecCCCCC--ceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CC
Confidence            356777889999999  99999821          112222211   123456789999999999999999999875 45


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++++||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||++.+++.++|+|||+++.
T Consensus        83 ~~l~~~~~~~g~l~~~l~~-~~~~~~~~~~~~~~~qi~~~L~~lH~~---~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~  158 (279)
T cd05109          83 VQLVTQLMPYGCLLDYVRE-NKDRIGSQDLLNWCVQIAKGMSYLEEV---RLVHRDLAARNVLVKSPNHVKITDFGLARL  158 (279)
T ss_pred             cEEEEEcCCCCCHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECCCCceee
Confidence            7899999999999999976 345699999999999999999999999   999999999999999999999999999865


Q ss_pred             cC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          168 LS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       168 ~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ..             +..|++||.+....++.++||||||+++||+++ |..||....    ...+..+.    ...   
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~----~~~~~~~~----~~~---  227 (279)
T cd05109         159 LDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIP----AREIPDLL----EKG---  227 (279)
T ss_pred             cccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC----HHHHHHHH----HCC---
Confidence            42             246999999988889999999999999999998 888886431    11111111    110   


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                         ...+.+...+..+.+++..||+.||++|||+.++++.|
T Consensus       228 ---~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l  265 (279)
T cd05109         228 ---ERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEF  265 (279)
T ss_pred             ---CcCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence               01122334567889999999999999999999998754

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=4.3e-38  Score=265.68  Aligned_cols=234  Identities=16%  Similarity=0.255  Sum_probs=185.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----HHHHHhcC-CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNS-PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      ..+|...+.+|.|+|  |.||++..     .++|.... ....+.+.+|+.++++++|+||+++++.+.+ ...+++|||
T Consensus         5 ~~~~~~~~~lg~g~~--~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~   81 (260)
T cd05073           5 RESLKLEKKLGAGQF--GEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEF   81 (260)
T ss_pred             ccceeEEeEecCccc--eEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEe
Confidence            346777889999999  99998821     11222222 1234568899999999999999999999887 778999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      +++++|.+++.......+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+....     
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  158 (260)
T cd05073          82 MAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYT  158 (260)
T ss_pred             CCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCCcceeeccCCCcc
Confidence            9999999999864455689999999999999999999999   99999999999999999999999999876532     


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             ...|+|||.+....++.++|+||||+++|++++ |..||......    .+..    ......      ..+.
T Consensus       159 ~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~----~~~~----~~~~~~------~~~~  224 (260)
T cd05073         159 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP----EVIR----ALERGY------RMPR  224 (260)
T ss_pred             cccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHH----HHHH----HHhCCC------CCCC
Confidence                   235999999988888999999999999999998 88888643110    0111    001100      0012


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+.++.+++.+||+.||++|||+.++.+.|
T Consensus       225 ~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L  257 (260)
T cd05073         225 PENCPEELYNIMMRCWKNRPEERPTFEYIQSVL  257 (260)
T ss_pred             cccCCHHHHHHHHHHcccCcccCcCHHHHHHHH
Confidence            334567899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=5.8e-38  Score=269.92  Aligned_cols=241  Identities=18%  Similarity=0.216  Sum_probs=184.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHHH----------------------HHHHhcCC---CCCCcHHHHHHHHhcCCCCccc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMRA----------------------LMATVNSP---YSPSRPLTLTSIVSRVSWTTDI   76 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~~----------------------~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv   76 (274)
                      ++|...+.+|+|+|  |.||++...                      ++|.....   ...+.+.+|+.++++++|+||+
T Consensus         5 ~~~~~~~~lg~G~~--g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~   82 (296)
T cd05095           5 KRLTFKEKLGEGQF--GEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNII   82 (296)
T ss_pred             hhceeeeeccCCCC--CeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcc
Confidence            56777889999999  999986211                      11111111   1224577999999999999999


Q ss_pred             eEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCC---------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC
Q 048314           77 EVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAE---------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQ  147 (274)
Q Consensus        77 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~---------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~  147 (274)
                      ++++++.+.+..+++|||+++|+|.+++.....         ..+++.....++.|++.||+|||+.   +++|+||||+
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dlkp~  159 (296)
T cd05095          83 RLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL---NFVHRDLATR  159 (296)
T ss_pred             eEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CeecccCChh
Confidence            999999999999999999999999999976321         2378889999999999999999999   9999999999


Q ss_pred             ceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh--cCCCccccCC
Q 048314          148 NILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC--CWENMEIDAS  212 (274)
Q Consensus       148 nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~--g~~p~~~~~~  212 (274)
                      ||+++.++.++++|||.+....             ...|++||....+.++.++|+||||+++|||++  |..||.....
T Consensus       160 Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~  239 (296)
T cd05095         160 NCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSD  239 (296)
T ss_pred             eEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccCh
Confidence            9999999999999999986431             246899998888889999999999999999998  6677753211


Q ss_pred             ChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          213 KPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .. .... ......... .....  +.+..++..+.+++.+||+.||++|||+.+|++.|
T Consensus       240 --~~-~~~~-~~~~~~~~~-~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l  294 (296)
T cd05095         240 --EQ-VIEN-TGEFFRDQG-RQVYL--PKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATL  294 (296)
T ss_pred             --HH-HHHH-HHHHHhhcc-ccccC--CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHH
Confidence              11 1110 001111100 00011  12334567899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.5e-38  Score=266.00  Aligned_cols=235  Identities=21%  Similarity=0.271  Sum_probs=188.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----HHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      .++|.....+|.|++  |.||++..     .++|... .....+++.+|+.++++++|+||+++++++.+....+++|||
T Consensus         5 ~~~~~i~~~ig~g~~--~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   82 (261)
T cd05034           5 RESLKLERKLGAGQF--GEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEY   82 (261)
T ss_pred             hhheeeeeeeccCcc--eEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEec
Confidence            467888889999999  99998721     1222222 223345688999999999999999999999988899999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      +++++|.+++.......+++..+..++.|++.|+.|||+.   +++|+|++|+||+++.++.++++|||.+....     
T Consensus        83 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~  159 (261)
T cd05034          83 MSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESR---NYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYT  159 (261)
T ss_pred             cCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcchheEEEcCCCCEEECccccceeccchhhh
Confidence            9999999999875445799999999999999999999999   99999999999999999999999999986543     


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +..|+|||.+.+..++.++|+||||++++++++ |+.||....   ....+..     ....     . ....
T Consensus       160 ~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~---~~~~~~~-----~~~~-----~-~~~~  225 (261)
T cd05034         160 AREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMT---NREVLEQ-----VERG-----Y-RMPR  225 (261)
T ss_pred             hhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCC---HHHHHHH-----HHcC-----C-CCCC
Confidence                   246999999988888999999999999999998 899985331   1111110     0000     0 0112


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+..+.+++.+||+.||++|||++++++.|
T Consensus       226 ~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l  258 (261)
T cd05034         226 PPNCPEELYDLMLQCWDKDPEERPTFEYLQSFL  258 (261)
T ss_pred             CCCCCHHHHHHHHHHcccCcccCCCHHHHHHHH
Confidence            333467899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=3e-38  Score=280.10  Aligned_cols=237  Identities=15%  Similarity=0.078  Sum_probs=184.0

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHH------HHHHHHh-----cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCM------RALMATV-----NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      +....++|...+.+|.|+|  |.||++.      ..++|.+     ......+.+.+|+.+++.++||||+++++++.+.
T Consensus        38 ~~~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~  115 (370)
T cd05596          38 LRMKAEDFDVIKVIGRGAF--GEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDD  115 (370)
T ss_pred             CCCCHHHcEEEEEEeeCCC--EEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecC
Confidence            3445678888999999999  9999771      1111111     1112334467899999999999999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      +..++||||+++|+|.+++.+   ..++......++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++
T Consensus       116 ~~~~lv~Ey~~gg~L~~~l~~---~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~kL~DfG~~  189 (370)
T cd05596         116 KYLYMVMEYMPGGDLVNLMSN---YDIPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTC  189 (370)
T ss_pred             CEEEEEEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEcCCCCEEEEeccce
Confidence            999999999999999999975   3588899999999999999999999   9999999999999999999999999997


Q ss_pred             eec------------CCCCcCCCcccccC----CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh
Q 048314          166 KLL------------SDKGCMAPECYKRT----PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN  229 (274)
Q Consensus       166 ~~~------------~~~~~~ape~~~~~----~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                      ...            +++.|+|||++...    .++.++|+|||||++|||++|..||......   ...     .....
T Consensus       190 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~---~~~-----~~i~~  261 (370)
T cd05596         190 MKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV---GTY-----SKIMD  261 (370)
T ss_pred             eeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHH---HHH-----HHHHc
Confidence            543            35679999988653    3788999999999999999999999744210   000     00000


Q ss_pred             hhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCC--CCChhhHHh
Q 048314          230 RELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL--RPSMKCVVM  272 (274)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~evl~  272 (274)
                      .. .....  +.....+..+.+++..||+.+|.+  |||+.|+++
T Consensus       262 ~~-~~~~~--~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~  303 (370)
T cd05596         262 HK-NSLTF--PDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKS  303 (370)
T ss_pred             CC-CcCCC--CCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhc
Confidence            00 00000  111134678899999999999988  999999975

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=5.6e-38  Score=264.19  Aligned_cols=227  Identities=21%  Similarity=0.198  Sum_probs=181.1

Q ss_pred             cCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCC
Q 048314           29 LNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      .+|.|++  |.||++..         .++|.....   ...+++.+|+.++++++||||+++++.+.+ ...++++||++
T Consensus         2 ~ig~g~~--~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~   78 (257)
T cd05040           2 KLGDGSF--GVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAP   78 (257)
T ss_pred             cCCccCc--ccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecC
Confidence            5899999  99998831         122322222   123467789999999999999999999988 88999999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-------  169 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-------  169 (274)
                      +++|.+++.+.....+++...+.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+....       
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~  155 (257)
T cd05040          79 LGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYV  155 (257)
T ss_pred             CCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhC---CccccccCcccEEEecCCEEEecccccccccccccccee
Confidence            99999999874335789999999999999999999999   99999999999999999999999999886543       


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +..|+|||.+....++.++|+||||+++|+|++ |..||.....  ..  ...   .. .. ..    .....
T Consensus       156 ~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~--~~~---~~-~~-~~----~~~~~  222 (257)
T cd05040         156 MEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSG--SQ--ILK---KI-DK-EG----ERLER  222 (257)
T ss_pred             cccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCH--HH--HHH---HH-Hh-cC----CcCCC
Confidence                   246999999988889999999999999999998 9999853311  10  100   00 00 00    01112


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+..+.+++.+||+.+|++|||+.++++.|
T Consensus       223 ~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l  255 (257)
T cd05040         223 PEACPQDIYNVMLQCWAHNPADRPTFAALREFL  255 (257)
T ss_pred             CccCCHHHHHHHHHHCCCCcccCCCHHHHHHHh
Confidence            334567899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=2.1e-38  Score=274.09  Aligned_cols=235  Identities=19%  Similarity=0.194  Sum_probs=185.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-------------HHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-------------ALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAM   83 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-------------~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~   83 (274)
                      .++|...+.+|+|+|  |.||++..             .++|.....   ...+++.+|+.+++++ +||||+++++++.
T Consensus        17 ~~~~~i~~~lg~G~~--g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (307)
T cd05098          17 RDRLVLGKPLGEGCF--GQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT   94 (307)
T ss_pred             hHHeEEeeeeccCCC--eeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe
Confidence            467888899999999  99997731             112222211   1223567899999999 6999999999999


Q ss_pred             eCCcceEEEEeCCCCCHHHHHHhCCC--------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 048314           84 RGSKPSTEAALDLPWDLAYIIFCSAE--------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  149 (274)
Q Consensus        84 ~~~~~~lv~e~~~~gsL~~~l~~~~~--------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  149 (274)
                      +.+..++||||+++|+|.+++.....              ..+++.++..++.|++.||+|||+.   +++|+||||+||
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Ni  171 (307)
T cd05098          95 QDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK---KCIHRDLAARNV  171 (307)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHHhe
Confidence            99999999999999999999986321              3489999999999999999999999   999999999999


Q ss_pred             EEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChh
Q 048314          150 LMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPE  215 (274)
Q Consensus       150 l~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~  215 (274)
                      +++.++.++|+|||.+....             +..|+|||.+....++.++|+||||+++|+|++ |..||...  +..
T Consensus       172 ll~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~--~~~  249 (307)
T cd05098         172 LVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV--PVE  249 (307)
T ss_pred             EEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcC--CHH
Confidence            99999999999999986432             246999999988888999999999999999998 78888532  111


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          216 EIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .  +.    ......      ...+.+...+..+.+++.+||+.+|++|||+.+|++.|
T Consensus       250 ~--~~----~~~~~~------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l  296 (307)
T cd05098         250 E--LF----KLLKEG------HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  296 (307)
T ss_pred             H--HH----HHHHcC------CCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHH
Confidence            1  00    001111      01123445567899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=3.5e-38  Score=265.26  Aligned_cols=232  Identities=16%  Similarity=0.175  Sum_probs=185.4

Q ss_pred             hccccccCCCCCCCCcchhHHH------HHHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM------RALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      +|...+.+|.|++  |.||++.      ..++|...   .....+.+.+|+.++++++||||+++++.+.+.+..+++||
T Consensus         1 ~y~~~~~lg~g~~--g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   78 (255)
T cd08219           1 QYNVLRVVGEGSF--GRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVME   78 (255)
T ss_pred             CceEEEEeeccCC--eEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEe
Confidence            3556788999999  9999871      11222221   11234556789999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++|+|.+++.......+++...+.++.|++.||.|||+.   +++|+||+|.||+++.++.++++|||.+....    
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~  155 (255)
T cd08219          79 YCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGA  155 (255)
T ss_pred             eCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEECCCCcEEEcccCcceeeccccc
Confidence            99999999999765556689999999999999999999999   99999999999999999999999999986543    


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                             +..|+|||++....++.++|+||||+++|+|++|..||....   .....    .. ...+..      ...+
T Consensus       156 ~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~---~~~~~----~~-~~~~~~------~~~~  221 (255)
T cd08219         156 YACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANS---WKNLI----LK-VCQGSY------KPLP  221 (255)
T ss_pred             ccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCC---HHHHH----HH-HhcCCC------CCCC
Confidence                   446999999988888999999999999999999999996431   10000    00 001110      1233


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ...+..+.+++.+||+.||++|||+.+++..
T Consensus       222 ~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         222 SHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             cccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence            4456778999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=3.8e-38  Score=265.05  Aligned_cols=233  Identities=17%  Similarity=0.237  Sum_probs=184.8

Q ss_pred             hhccccccCCCCCCCCcchhHHHHH-----HHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMRA-----LMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~~-----~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      .+|.....+|.|++  |.||++...     ++|... .....+.+.+|++++++++|||++++++++......+++|||+
T Consensus         4 ~~~~~~~~ig~g~~--g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd05112           4 SELTLVQEIGSGQF--GLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFM   81 (256)
T ss_pred             hHeEEEeeecCccc--ceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcC
Confidence            35566788999999  999987221     122222 1223456889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++++|.+++.. ....+++..++.++.|++.|+.|||+.   +++|+|++|+||+++.++.++++|||.+....      
T Consensus        82 ~~~~L~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~  157 (256)
T cd05112          82 EHGCLSDYLRA-QRGKFSQETLLGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTS  157 (256)
T ss_pred             CCCcHHHHHHh-CccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccccceEEEcCCCeEEECCCcceeecccCcccc
Confidence            99999999976 345689999999999999999999999   99999999999999999999999999876432      


Q ss_pred             ------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 ------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 ------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            +..|+|||.+....++.++|+||||+++|++++ |..||....   .. .+..   . ....  ...    ..+
T Consensus       158 ~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~---~~-~~~~---~-~~~~--~~~----~~~  223 (256)
T cd05112         158 STGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRS---NS-EVVE---T-INAG--FRL----YKP  223 (256)
T ss_pred             cCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCC---HH-HHHH---H-HhCC--CCC----CCC
Confidence                  246999999988888999999999999999998 899986331   11 1111   0 0000  011    122


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+..+.+++.+||+.+|++|||+.++++.|
T Consensus       224 ~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         224 RLASQSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             CCCCHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence            23457899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=3.5e-38  Score=275.65  Aligned_cols=232  Identities=15%  Similarity=0.109  Sum_probs=180.9

Q ss_pred             hccccccCCCCCCCCcchhHHHHH---------HHHHh------cCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCC
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMRA---------LMATV------NSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGS   86 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~~---------~~~~~------~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~   86 (274)
                      +|...+.||.|+|  |.||.+..+         ++|..      ......+.+..|+.++.+++ ||||+++++++.+.+
T Consensus         1 ~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~   78 (332)
T cd05614           1 NFELLKVLGTGAY--GKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEA   78 (332)
T ss_pred             CceEEEEEeecCC--EEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCC
Confidence            3566788999999  999975221         11111      11122345678999999995 899999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++||||+++|+|.+++..  ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++.
T Consensus        79 ~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nili~~~~~~kl~DfG~~~  153 (332)
T cd05614          79 KLHLILDYVSGGEMFTHLYQ--RDNFSEDEVRFYSGEIILALEHLHKL---GIVYRDIKLENILLDSEGHVVLTDFGLSK  153 (332)
T ss_pred             EEEEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHeEECCCCCEEEeeCcCCc
Confidence            99999999999999999975  45689999999999999999999999   99999999999999999999999999886


Q ss_pred             ec------------CCCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          167 LL------------SDKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       167 ~~------------~~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ..            ++..|+|||.+... .++.++|||||||++|||++|..||...........+..    ...     
T Consensus       154 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~----~~~-----  224 (332)
T cd05614         154 EFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSR----RIL-----  224 (332)
T ss_pred             cccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHH----HHh-----
Confidence            42            35679999998764 478899999999999999999999964422221111111    000     


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      .  .....+...+..+.+++.+||+.||++||     ++.++++
T Consensus       225 ~--~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  266 (332)
T cd05614         225 K--CDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKE  266 (332)
T ss_pred             c--CCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence            0  01123445567889999999999999999     6677765

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.1e-38  Score=281.13  Aligned_cols=231  Identities=18%  Similarity=0.191  Sum_probs=177.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ..+|.....||.|+|  |.||++..      .++|.....   ...+.+.+|++++++++|+||+++++++.+.+..++|
T Consensus        73 ~~~~~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  150 (353)
T PLN00034         73 LSELERVNRIGSGAG--GTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVL  150 (353)
T ss_pred             HHHHhhhhhccCCCC--eEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEE
Confidence            355666788999999  99999821      122222211   1124577999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |||+.+|+|.+..      ..++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...   
T Consensus       151 ~e~~~~~~L~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~  221 (353)
T PLN00034        151 LEFMDGGSLEGTH------IADEQFLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQT  221 (353)
T ss_pred             EecCCCCcccccc------cCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEcccccceecccc
Confidence            9999999986532      356788889999999999999999   9999999999999999999999999998643   


Q ss_pred             --------CCCCcCCCcccccC-----CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          169 --------SDKGCMAPECYKRT-----PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       169 --------~~~~~~ape~~~~~-----~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                              ++..|+|||.+...     ..+.++|||||||++|||++|+.||......... .+..   ..    .   .
T Consensus       222 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~-~~~~---~~----~---~  290 (353)
T PLN00034        222 MDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWA-SLMC---AI----C---M  290 (353)
T ss_pred             cccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHH-HHHH---HH----h---c
Confidence                    25679999987432     2346899999999999999999999733111111 0000   00    0   0


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ......+...+.++.+++.+||+.||++|||+.|+++.
T Consensus       291 ~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        291 SQPPEAPATASREFRHFISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             cCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            01112344566789999999999999999999999863

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=4.4e-38  Score=266.79  Aligned_cols=233  Identities=20%  Similarity=0.175  Sum_probs=186.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      +++.....+|.|+|  |.||+|..         .++|.....   ...+.|..|+.++++++||||+++++++.++...+
T Consensus         4 ~~~~~~~~lg~g~~--g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   81 (269)
T cd05065           4 SCVKIEEVIGAGEF--GEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVM   81 (269)
T ss_pred             HHeEEEeEecCCCC--CeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceE
Confidence            45667889999999  99998731         222222221   12346789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +||||+++++|.+++.. ..+.+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||++....
T Consensus        82 lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~~l~~al~~lH~~---g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~  157 (269)
T cd05065          82 IITEFMENGALDSFLRQ-NDGQFTVIQLVGMLRGIAAGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLE  157 (269)
T ss_pred             EEEecCCCCcHHHHHhh-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccChheEEEcCCCcEEECCCccccccc
Confidence            99999999999999976 345689999999999999999999999   99999999999999999999999999876432


Q ss_pred             ----------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          170 ----------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       170 ----------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                                      +..|++||.+....++.++|+||||+++||+++ |..||.....    .......    .    
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~----~~~~~~i----~----  225 (269)
T cd05065         158 DDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSN----QDVINAI----E----  225 (269)
T ss_pred             cCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCH----HHHHHHH----H----
Confidence                            125999999988889999999999999999886 9999853311    1111111    0    


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       .. .+.+.+...+..+.+++.+||+.+|.+||++.+|+.+|
T Consensus       226 -~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  265 (269)
T cd05065         226 -QD-YRLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTL  265 (269)
T ss_pred             -cC-CcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence             00 01123345567889999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1.7e-38  Score=277.35  Aligned_cols=233  Identities=18%  Similarity=0.113  Sum_probs=181.7

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|.....+|.|+|  |.||++.      ..++|.     .......+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus         1 ~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~l   78 (330)
T cd05601           1 KDFDVKSLVGRGHF--GEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYL   78 (330)
T ss_pred             CCceEEEEEEeccC--EEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEE
Confidence            35777889999999  9999871      111111     1112234456789999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      ||||+++|+|.+++.. ....+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...  
T Consensus        79 v~e~~~~~~L~~~l~~-~~~~l~~~~~~~~~~qi~~aL~~lH~~---~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~  154 (330)
T cd05601          79 VMEYQPGGDLLSLLNR-YEDQFDEDMAQFYLAELVLAIHSVHQM---GYVHRDIKPENVLIDRTGHIKLADFGSAARLTA  154 (330)
T ss_pred             EECCCCCCCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEcccCchHheEECCCCCEEeccCCCCeECCC
Confidence            9999999999999986 335799999999999999999999999   9999999999999999999999999998643  


Q ss_pred             ----------CCCCcCCCcccc------cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          169 ----------SDKGCMAPECYK------RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       169 ----------~~~~~~ape~~~------~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                                +++.|+|||++.      ...++.++|||||||++|+|++|..||......   ....    .. .+.  
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~---~~~~----~i-~~~--  224 (330)
T cd05601         155 NKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSA---KTYN----NI-MNF--  224 (330)
T ss_pred             CCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHH---HHHH----HH-HcC--
Confidence                      256799999886      445788999999999999999999999643111   1010    00 000  


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .....- +.+...+..+.+++..||+ ||.+|||+.++++
T Consensus       225 ~~~~~~-~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         225 QRFLKF-PEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             CCccCC-CCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence            000000 1112345778999999998 9999999999875

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=1.7e-38  Score=282.19  Aligned_cols=231  Identities=18%  Similarity=0.103  Sum_probs=180.2

Q ss_pred             hccccccCCCCCCCCcchhHHH------HHHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM------RALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~------~~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|...+.||.|+|  |.||++.      ..++|.     .......+.+.+|+.+|++++||||+++++.+.+++..++|
T Consensus         2 ~y~~~~~lG~G~~--g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv   79 (376)
T cd05598           2 MFVKIKTIGIGAF--GEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV   79 (376)
T ss_pred             CceEEEEEEeCCC--eEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEE
Confidence            5677888999999  9999881      111111     11112345567899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce-----
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-----  166 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~-----  166 (274)
                      |||+++|+|.+++..  .+.+++.....++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||++.     
T Consensus        80 ~E~~~~g~L~~~i~~--~~~~~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~  154 (376)
T cd05598          80 MDYIPGGDMMSLLIR--LGIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWT  154 (376)
T ss_pred             EeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHEEECCCCCEEEEeCCCCcccccc
Confidence            999999999999975  45689999999999999999999999   99999999999999999999999999863     


Q ss_pred             -------------------------------------------------ecCCCCcCCCcccccCCCccccceeehhHhH
Q 048314          167 -------------------------------------------------LLSDKGCMAPECYKRTPISVKADVYGYGIVL  197 (274)
Q Consensus       167 -------------------------------------------------~~~~~~~~ape~~~~~~~~~~~Di~s~G~~l  197 (274)
                                                                       ..+++.|+|||++....++.++|||||||++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil  234 (376)
T cd05598         155 HDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL  234 (376)
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeecccee
Confidence                                                             1346789999999988899999999999999


Q ss_pred             HHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCC---ChhhHHh
Q 048314          198 LETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRP---SMKCVVM  272 (274)
Q Consensus       198 ~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp---s~~evl~  272 (274)
                      |||++|+.||............        ..... ....  +.....+..+.+++.+|+ .+|++|+   |+.|+++
T Consensus       235 yell~G~~Pf~~~~~~~~~~~i--------~~~~~-~~~~--~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~  300 (376)
T cd05598         235 YEMLVGQPPFLADTPAETQLKV--------INWET-TLHI--PSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKA  300 (376)
T ss_pred             eehhhCCCCCCCCCHHHHHHHH--------hccCc-cccC--CCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhC
Confidence            9999999999644211100000        00000 0000  111234567788888876 5999999   8999875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.4e-38  Score=265.03  Aligned_cols=225  Identities=20%  Similarity=0.226  Sum_probs=178.2

Q ss_pred             ccCCCCCCCCcchhHHHH---------HHHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR---------ALMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~---------~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.||.|+|  |.||+|..         .++|......   ..+.+.+|+.+++++.||||+++++++. .+..++||||+
T Consensus         1 ~~ig~G~~--g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~   77 (257)
T cd05060           1 KELGHGNF--GSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELA   77 (257)
T ss_pred             CccCccCc--eeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeC
Confidence            36899999  99998831         1122222111   2345778999999999999999999875 45689999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++|+|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+....      
T Consensus        78 ~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~  152 (257)
T cd05060          78 PLGPLLKYLKK--RREIPVSDLKELAHQVAMGMAYLESK---HFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYY  152 (257)
T ss_pred             CCCcHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHhhc---CeeccCcccceEEEcCCCcEEeccccccceeecCCccc
Confidence            99999999986  33789999999999999999999999   99999999999999999999999999986432      


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                              +..|+|||.+....++.++|+||||+++|++++ |..||.....    ..+....    ...      ....
T Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~----~~~~~~~----~~~------~~~~  218 (257)
T cd05060         153 RATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG----AEVIAML----ESG------ERLP  218 (257)
T ss_pred             ccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH----HHHHHHH----HcC------CcCC
Confidence                    135999999988889999999999999999997 9999864311    1111111    111      1112


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+...+..+.+++.+||+.||++|||+.+|++.|
T Consensus       219 ~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l  252 (257)
T cd05060         219 RPEECPQEIYSIMLSCWKYRPEDRPTFSELESTF  252 (257)
T ss_pred             CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence            3445567899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=5.4e-38  Score=272.80  Aligned_cols=221  Identities=15%  Similarity=0.109  Sum_probs=174.4

Q ss_pred             cCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHHHHhc-CCCCccceEeEEEEeCCcceEEEEeCC
Q 048314           29 LNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTSIVSR-VSWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~~l~~-l~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      .||.|+|  |.||++..      .++|.+     ......+.+..|..++.. .+||||+++++++...+..++||||++
T Consensus         2 ~lG~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~   79 (316)
T cd05592           2 VLGKGSF--GKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLN   79 (316)
T ss_pred             eeeeCCC--eEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCC
Confidence            6899999  99998821      111111     111233445667777765 479999999999999999999999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------  168 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--------  168 (274)
                      +|+|.+++..  ...+++.....++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...        
T Consensus        80 gg~L~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~  154 (316)
T cd05592          80 GGDLMFHIQS--SGRFDEARARFYAAEIICGLQFLHKK---GIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKAS  154 (316)
T ss_pred             CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccc
Confidence            9999999975  45689999999999999999999999   9999999999999999999999999998642        


Q ss_pred             ---CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHH
Q 048314          169 ---SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKN  245 (274)
Q Consensus       169 ---~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (274)
                         +++.|+|||++.+..++.++|+|||||++|+|++|..||.....   .. +.    .....       .....+...
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~---~~-~~----~~i~~-------~~~~~~~~~  219 (316)
T cd05592         155 TFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDE---DE-LF----DSILN-------DRPHFPRWI  219 (316)
T ss_pred             cccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCH---HH-HH----HHHHc-------CCCCCCCCC
Confidence               26789999999888899999999999999999999999964311   10 10    00000       011234445


Q ss_pred             HHHHHHHHHHhhccCCCCCCChh-hHH
Q 048314          246 LENLVKVGLWCVQDEPALRPSMK-CVV  271 (274)
Q Consensus       246 ~~~~~~li~~cl~~dp~~Rps~~-evl  271 (274)
                      +..+.+++.+||+.||++||++. +++
T Consensus       220 ~~~~~~ll~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05592         220 SKEAKDCLSKLFERDPTKRLGVDGDIR  246 (316)
T ss_pred             CHHHHHHHHHHccCCHHHcCCChHHHH
Confidence            67789999999999999999975 454

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=4.5e-38  Score=265.49  Aligned_cols=227  Identities=22%  Similarity=0.295  Sum_probs=174.8

Q ss_pred             ccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEe-CCcceEEEEe
Q 048314           28 SLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR-GSKPSTEAAL   94 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~e~   94 (274)
                      +.+|+|+|  |.||+|..         .++|.....   ...+.+.+|+.+++.++||||+++++++.. ++..++++||
T Consensus         1 ~~lg~g~~--g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~   78 (262)
T cd05058           1 RVIGKGHF--GCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPY   78 (262)
T ss_pred             CcccccCC--ceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEec
Confidence            36899999  99998731         122222111   123467789999999999999999998764 5568999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      +++|+|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++++|||++....     
T Consensus        79 ~~~~~L~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~  154 (262)
T cd05058          79 MKHGDLRNFIRS-ETHNPTVKDLIGFGLQVAKGMEYLASK---KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYY  154 (262)
T ss_pred             CCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCccccccccCCcce
Confidence            999999999976 334578888899999999999999999   99999999999999999999999999886321     


Q ss_pred             ----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcC-CCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          170 ----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCW-ENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       170 ----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                +..|+|||.+....++.++||||||+++|||++|. +||... .   ...+....    ..+      ..
T Consensus       155 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~-~---~~~~~~~~----~~~------~~  220 (262)
T cd05058         155 SVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-D---SFDITVYL----LQG------RR  220 (262)
T ss_pred             eecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCC-C---HHHHHHHH----hcC------CC
Confidence                      34699999998888999999999999999999964 455322 1   11111110    000      01


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+...+..+.+++..||+.+|++|||+.+|++.|
T Consensus       221 ~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l  256 (262)
T cd05058         221 LLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRI  256 (262)
T ss_pred             CCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence            112333456899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=3.8e-38  Score=274.60  Aligned_cols=226  Identities=19%  Similarity=0.153  Sum_probs=175.6

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHHHH---hcCCCCccceEeEEEEeCCcce
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTSIV---SRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~~l---~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      |...+.+|.|++  |.||++..      .++|..     ......+.+.+|++++   ++++||||+++++++.+.+..+
T Consensus         1 y~i~~~lg~G~~--g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~   78 (324)
T cd05589           1 FRCLAVLGRGHF--GKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVC   78 (324)
T ss_pred             CeEEEEEeecCC--EEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEE
Confidence            344678999999  99998821      111111     1112234455665554   5678999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      +||||+++|+|..++..   ..+++.....++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++... 
T Consensus        79 lv~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~  152 (324)
T cd05589          79 FVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGLCKEGM  152 (324)
T ss_pred             EEEcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCcEEeCcccCCccCC
Confidence            99999999999988853   5699999999999999999999999   9999999999999999999999999987532 


Q ss_pred             ----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          169 ----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       169 ----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                +++.|+|||.+....++.++|+|||||++|+|++|..||....   .....     ......       .
T Consensus       153 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~---~~~~~-----~~i~~~-------~  217 (324)
T cd05589         153 GFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDD---EEEVF-----DSIVND-------E  217 (324)
T ss_pred             CCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCC---HHHHH-----HHHHhC-------C
Confidence                      3668999999988889999999999999999999999996431   11100     000110       1


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      ...+...+..+.+++.+||+.||.+||     ++.++++
T Consensus       218 ~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~  256 (324)
T cd05589         218 VRYPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKK  256 (324)
T ss_pred             CCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhh
Confidence            123444567889999999999999999     4666654

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.8e-38  Score=271.17  Aligned_cols=246  Identities=18%  Similarity=0.188  Sum_probs=181.9

Q ss_pred             hhccccccCCCCCCCCcchhHHHH----------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEe--CCc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR----------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--GSK   87 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~   87 (274)
                      ++|...+.+|.|+|  |.||++..          .++|.....  ...+.+.+|++++++++||||+++++++..  ...
T Consensus         4 ~~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   81 (284)
T cd05081           4 RHLKFIQQLGKGNF--GSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN   81 (284)
T ss_pred             ccceeeeeccCCCC--ceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCc
Confidence            45677888999999  99998631          112222111  123457799999999999999999998754  346


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++|+||+++|+|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++..
T Consensus        82 ~~lv~e~~~~~~L~~~l~~-~~~~l~~~~~~~~~~~l~~aL~~LH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~  157 (284)
T cd05081          82 LRLVMEYLPYGSLRDYLQK-HRERLDHRKLLLYASQICKGMEYLGSK---RYVHRDLATRNILVESENRVKIGDFGLTKV  157 (284)
T ss_pred             eEEEEEecCCCCHHHHHHh-cCcCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHhhEEECCCCeEEECCCccccc
Confidence            8999999999999999975 334689999999999999999999999   999999999999999999999999999875


Q ss_pred             cC--------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          168 LS--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       168 ~~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ..              ...|+|||.+....++.++|+||||++++||++|..++.......... .............+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  236 (284)
T cd05081         158 LPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRM-MGNDKQGQMIVYHLI  236 (284)
T ss_pred             ccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhh-cccccccccchHHHH
Confidence            32              123899999988888999999999999999999877654221100000 000000000000000


Q ss_pred             hhhcCC---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVRGT---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +.+...   ..+...+..+.+++.+||..+|++|||+.||++.|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l  280 (284)
T cd05081         237 ELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQV  280 (284)
T ss_pred             HHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence            111111   23344567899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=7.2e-38  Score=265.45  Aligned_cols=231  Identities=17%  Similarity=0.167  Sum_probs=173.5

Q ss_pred             cCCCCCCCCcchhHHHH--------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCC
Q 048314           29 LNDRNSPRSKSVWSCMR--------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLP   97 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~--------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~   97 (274)
                      .+|+|+|  |.||+|..        .+++.....   .....+.+|+.+++.++||||+++++.+.+....++||||+++
T Consensus         2 ~lg~G~f--g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~   79 (269)
T cd05042           2 EIGNGWF--GKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPL   79 (269)
T ss_pred             cCCccCC--ceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCC
Confidence            4899999  99998821        112222211   1123467899999999999999999999999999999999999


Q ss_pred             CCHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           98 WDLAYIIFCSAE---RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        98 gsL~~~l~~~~~---~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      |+|.+++.....   ...++.....++.|++.||+|||+.   +++||||||+||+++.++.+|++|||++....     
T Consensus        80 g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~  156 (269)
T cd05042          80 GDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA---DFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYY  156 (269)
T ss_pred             CcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc---CEecccccHhheEecCCCcEEEeccccccccccchhe
Confidence            999999986432   2357888899999999999999999   99999999999999999999999999975421     


Q ss_pred             --------CCCcCCCccccc-------CCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          170 --------DKGCMAPECYKR-------TPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       170 --------~~~~~ape~~~~-------~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                              +..|+|||++..       ..++.++|+||||+++|||++ |..||...   .....+..    ... ....
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~---~~~~~~~~----~~~-~~~~  228 (269)
T cd05042         157 ITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDL---SDEQVLKQ----VVR-EQDI  228 (269)
T ss_pred             eccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcC---CHHHHHHH----Hhh-ccCc
Confidence                    345999998743       346789999999999999998 67777533   11111111    001 1111


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+ ..+...+..+.+++..|| .||++|||+++|++.|
T Consensus       229 ~~~~~-~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l  267 (269)
T cd05042         229 KLPKP-QLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHELL  267 (269)
T ss_pred             cCCCC-cccccCCHHHHHHHHHHh-cCcccccCHHHHHHHh
Confidence            11111 233355677888999999 5999999999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=2.4e-38  Score=281.89  Aligned_cols=231  Identities=16%  Similarity=0.098  Sum_probs=178.2

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhc-----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVN-----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|...+.||+|+|  |.||++..      .++|.+.     .....+.+.+|+.++++++||||+++++.+.+.+..++|
T Consensus         2 ~f~~~~~LG~G~~--g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv   79 (382)
T cd05625           2 MFVKIKTLGIGAF--GEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFV   79 (382)
T ss_pred             CcEEEEEEEeCCC--EEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEE
Confidence            4667788999999  99999821      1111111     112234567899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee----
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL----  167 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~----  167 (274)
                      ||||++|+|.+++..  .+.+++.....++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||++..    
T Consensus        80 ~E~~~gg~L~~~l~~--~~~~~e~~~~~~~~qi~~al~~lH~~---~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~  154 (382)
T cd05625          80 MDYIPGGDMMSLLIR--MGIFPEDLARFYIAELTCAVESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWT  154 (382)
T ss_pred             EeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEeECCCCcccccc
Confidence            999999999999975  35689999999999999999999999   999999999999999999999999998531    


Q ss_pred             ------------------------------------------------------cCCCCcCCCcccccCCCccccceeeh
Q 048314          168 ------------------------------------------------------LSDKGCMAPECYKRTPISVKADVYGY  193 (274)
Q Consensus       168 ------------------------------------------------------~~~~~~~ape~~~~~~~~~~~Di~s~  193 (274)
                                                                            .+++.|+|||++....++.++||||+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSl  234 (382)
T cd05625         155 HDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSV  234 (382)
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEec
Confidence                                                                  24567999999988889999999999


Q ss_pred             hHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCC---hhhH
Q 048314          194 GIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPS---MKCV  270 (274)
Q Consensus       194 G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps---~~ev  270 (274)
                      ||++|||++|..||............        .... ...  ..+.....++++.+++.+|+ .||++|++   +.++
T Consensus       235 Gvil~elltG~~Pf~~~~~~~~~~~i--------~~~~-~~~--~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei  302 (382)
T cd05625         235 GVILYEMLVGQPPFLAQTPLETQMKV--------INWQ-TSL--HIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEI  302 (382)
T ss_pred             hHHHHHHHhCCCCCCCCCHHHHHHHH--------HccC-CCc--CCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHH
Confidence            99999999999999643111000000        0000 000  00111234567788888876 59999997   8887


Q ss_pred             Hh
Q 048314          271 VM  272 (274)
Q Consensus       271 l~  272 (274)
                      ++
T Consensus       303 ~~  304 (382)
T cd05625         303 KA  304 (382)
T ss_pred             hc
Confidence            64

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5e-38  Score=266.96  Aligned_cols=229  Identities=18%  Similarity=0.125  Sum_probs=188.1

Q ss_pred             hhccccccCCCCCCCCcchhHH----------HHHH-HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC----------MRAL-MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~----------~~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      +.|...+.+|.|..  |.||.+          ++++ +....+.....+...|-+||+.++||.++.||..+..+...|+
T Consensus        77 ~~f~llk~LG~Gdi--G~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl  154 (459)
T KOG0610|consen   77 RHFRLLKRLGCGDI--GTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCL  154 (459)
T ss_pred             HHHHHHHHcCCCCc--eeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEE
Confidence            45666778999999  999988          2222 3333333455566789999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      +||||+||+|...++...++.+++..++.++.+++.||.|||-.   ||++|||||+|||+.++|++.|+||.++.... 
T Consensus       155 ~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHml---GivYRDLKPENILvredGHIMLsDFDLS~~~~~  231 (459)
T KOG0610|consen  155 VMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHML---GIVYRDLKPENILVREDGHIMLSDFDLSLRCPV  231 (459)
T ss_pred             EEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhh---ceeeccCCcceeEEecCCcEEeeeccccccCCC
Confidence            99999999999999988888899999999999999999999999   99999999999999999999999998763110 


Q ss_pred             ------------------------------------------------------------------CCCcCCCcccccCC
Q 048314          170 ------------------------------------------------------------------DKGCMAPECYKRTP  183 (274)
Q Consensus       170 ------------------------------------------------------------------~~~~~ape~~~~~~  183 (274)
                                                                                        |..|+|||++.+..
T Consensus       232 ~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~G  311 (459)
T KOG0610|consen  232 SPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEG  311 (459)
T ss_pred             CCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCC
Confidence                                                                              33499999999999


Q ss_pred             CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-cc--CHHHHHHHHHHHHHhhccC
Q 048314          184 ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-EV--DKKNLENLVKVGLWCVQDE  260 (274)
Q Consensus       184 ~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~li~~cl~~d  260 (274)
                      .+..+|.|+|||++|||+.|..||........                ..+++... .+  ....+..++|||++.|.+|
T Consensus       312 HgsAVDWWtfGIflYEmLyG~TPFKG~~~~~T----------------l~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKd  375 (459)
T KOG0610|consen  312 HGSAVDWWTFGIFLYEMLYGTTPFKGSNNKET----------------LRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKD  375 (459)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCcCCCCchhh----------------HHHHhcCCCcCCCCCcchhHHHHHHHHHhccC
Confidence            99999999999999999999999975532221                12222211 11  2255678999999999999


Q ss_pred             CCCCCC----hhhHH
Q 048314          261 PALRPS----MKCVV  271 (274)
Q Consensus       261 p~~Rps----~~evl  271 (274)
                      |.+|.-    ++||-
T Consensus       376 P~kRlg~~rGA~eIK  390 (459)
T KOG0610|consen  376 PSKRLGSKRGAAEIK  390 (459)
T ss_pred             hhhhhccccchHHhh
Confidence            999986    66653

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.7e-37  Score=262.37  Aligned_cols=236  Identities=17%  Similarity=0.205  Sum_probs=187.8

Q ss_pred             hhccccccCCCCCCCCcchhHHHHH------HHHHh-----cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMRA------LMATV-----NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~~------~~~~~-----~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.+|.|++  |.||+|...      ++|..     ......+.+.+|++++++++|+|++++++.+.+.+..++
T Consensus         2 ~~y~~~~~lg~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~l   79 (267)
T cd08224           2 GNFKIEKKIGKGQF--SVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNI   79 (267)
T ss_pred             CceeeeeeeccCCc--eEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence            56777889999999  999988221      12211     111234567899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           91 EAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      +|||+++|+|.+++...  ....+++..++.++.+++.||.|||+.   +++|+||+|+||+++.++.++++|||.+...
T Consensus        80 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~  156 (267)
T cd08224          80 VLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK---RIMHRDIKPANVFITATGVVKLGDLGLGRFF  156 (267)
T ss_pred             EEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecCCcChhhEEECCCCcEEEeccceeeec
Confidence            99999999999999753  234589999999999999999999999   9999999999999999999999999987643


Q ss_pred             C-----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 S-----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 ~-----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                      .           +..|+|||.+....++.++|+||||+++|+|++|..||.......     .... .....+     ..
T Consensus       157 ~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-----~~~~-~~~~~~-----~~  225 (267)
T cd08224         157 SSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL-----YSLC-KKIEKC-----DY  225 (267)
T ss_pred             cCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccH-----HHHH-hhhhcC-----CC
Confidence            2           446999999988888999999999999999999999986442111     0000 000000     01


Q ss_pred             CCccCH-HHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          238 GTEVDK-KNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       238 ~~~~~~-~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      + +.+. ..+..+.+++.+||+.+|++|||+.+|+++|
T Consensus       226 ~-~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~  262 (267)
T cd08224         226 P-PLPADHYSEELRDLVSRCINPDPEKRPDISYVLQVA  262 (267)
T ss_pred             C-CCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHH
Confidence            1 1222 5567899999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=1e-37  Score=264.70  Aligned_cols=231  Identities=17%  Similarity=0.165  Sum_probs=173.4

Q ss_pred             cCCCCCCCCcchhHHHH--------HHHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCC
Q 048314           29 LNDRNSPRSKSVWSCMR--------ALMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLP   97 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~--------~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~   97 (274)
                      .+|.|+|  |.||+|..        .+++......   ....+.+|+.++++++||||+++++++.+....++||||+++
T Consensus         2 ~lg~G~~--g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   79 (269)
T cd05087           2 EIGNGWF--GKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPL   79 (269)
T ss_pred             cccccCC--ceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCC
Confidence            5899999  99998831        1122222211   123567899999999999999999999998899999999999


Q ss_pred             CCHHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           98 WDLAYIIFCSAE---RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        98 gsL~~~l~~~~~---~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      |+|.+++.....   ..+++..+..++.|++.|+.|||+.   +++|+|+||+||+++.++.++++|||.+....     
T Consensus        80 g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~  156 (269)
T cd05087          80 GDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN---NFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYY  156 (269)
T ss_pred             CcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEECCccccccccCccee
Confidence            999999975321   2467888889999999999999999   99999999999999999999999999885321     


Q ss_pred             --------CCCcCCCcccccC-------CCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          170 --------DKGCMAPECYKRT-------PISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       170 --------~~~~~ape~~~~~-------~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                              +..|+|||++...       .++.++|+||||+++|||++ |..||.....  ...  ...    .......
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~--~~~--~~~----~~~~~~~  228 (269)
T cd05087         157 VTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSD--EQV--LTY----TVREQQL  228 (269)
T ss_pred             ecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCCh--HHH--HHH----HhhcccC
Confidence                    3459999987532       35789999999999999996 9999964311  110  000    0001111


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...++ ......+..+.+++..|| .+|++|||++||+..|
T Consensus       229 ~~~~~-~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l  267 (269)
T cd05087         229 KLPKP-RLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLL  267 (269)
T ss_pred             CCCCC-ccCCCCChHHHHHHHHHh-cCcccCCCHHHHHHHh
Confidence            11111 122234567889999999 6899999999998765

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-38  Score=279.90  Aligned_cols=232  Identities=17%  Similarity=0.161  Sum_probs=183.8

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|...+.+|.|+|  |.||++..      .++|.     .........+.+|+.++..++||||+++++++.+.+..++|
T Consensus         2 ~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv   79 (350)
T cd05573           2 DFEVIKVIGRGAF--GEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLV   79 (350)
T ss_pred             CceEEEEEEeCCc--EEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEE
Confidence            5777889999999  99998821      11111     11223345577899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...   
T Consensus        80 ~e~~~~~~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH~~---giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~  154 (350)
T cd05573          80 MEYMPGGDLMNLLIR--KDVFPEETARFYIAELVLALDSVHKL---GFIHRDIKPDNILIDADGHIKLADFGLCKKMNKA  154 (350)
T ss_pred             EcCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEeecCCCCccCccc
Confidence            999999999999986  36799999999999999999999999   9999999999999999999999999987532   


Q ss_pred             -------------------------------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccC
Q 048314          169 -------------------------------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDA  211 (274)
Q Consensus       169 -------------------------------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~  211 (274)
                                                           +++.|+|||++....++.++|||||||++|+|++|+.||....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~  234 (350)
T cd05573         155 KDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDT  234 (350)
T ss_pred             CcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCC
Confidence                                                 2566999999998899999999999999999999999997542


Q ss_pred             CChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCC-hhhHHhh
Q 048314          212 SKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPS-MKCVVMM  273 (274)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-~~evl~~  273 (274)
                      ...   ..     ...... ......  +.....+..+.+++.+|+. ||.+||+ ++++++.
T Consensus       235 ~~~---~~-----~~i~~~-~~~~~~--p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         235 LQE---TY-----NKIINW-KESLRF--PPDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             HHH---HH-----HHHhcc-CCcccC--CCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence            110   00     000000 000000  1111246789999999997 9999999 9999863

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=6.2e-38  Score=273.17  Aligned_cols=219  Identities=17%  Similarity=0.145  Sum_probs=171.9

Q ss_pred             ccCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHH-HHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTS-IVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      ++||.|+|  |.||++..      .++|.+     ........+..|.. +++.++||||+++++++.+.+..++||||+
T Consensus         1 ~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~   78 (323)
T cd05575           1 KVIGKGSF--GKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYV   78 (323)
T ss_pred             CeeeeCCC--eEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCC
Confidence            36899999  99998821      111111     11122234455555 467899999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      .+|+|.+++..  ...+++.....++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...       
T Consensus        79 ~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~  153 (323)
T cd05575          79 NGGELFFHLQR--ERSFPEPRARFYAAEIASALGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTT  153 (323)
T ss_pred             CCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCcc
Confidence            99999999975  45789999999999999999999999   9999999999999999999999999987532       


Q ss_pred             ----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          169 ----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       169 ----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                          +++.|+|||++....++.++|||||||++|+|++|..||.....   .. +   . ......       +...+..
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~---~~-~---~-~~i~~~-------~~~~~~~  218 (323)
T cd05575         154 STFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDT---AE-M---Y-DNILNK-------PLRLKPN  218 (323)
T ss_pred             ccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCH---HH-H---H-HHHHcC-------CCCCCCC
Confidence                35679999999988899999999999999999999999964311   00 0   0 000010       1112334


Q ss_pred             HHHHHHHHHHHhhccCCCCCCChh
Q 048314          245 NLENLVKVGLWCVQDEPALRPSMK  268 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~~  268 (274)
                      .+..+.+++.+||+.||.+||++.
T Consensus       219 ~~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         219 ISVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             CCHHHHHHHHHHhhcCHHhCCCCC
Confidence            467889999999999999999984

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.7e-37  Score=305.83  Aligned_cols=242  Identities=18%  Similarity=0.370  Sum_probs=188.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      ...|...+++|+|+|  |.||+|..      .++|....  .......|++++++++|||||+++|+|.+.+..++||||
T Consensus       689 ~~~~~~~~~ig~G~~--g~Vy~~~~~~~~~~vavK~~~~--~~~~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey  764 (968)
T PLN00113        689 LSSLKEENVISRGKK--GASYKGKSIKNGMQFVVKEIND--VNSIPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEY  764 (968)
T ss_pred             HhhCCcccEEccCCC--eeEEEEEECCCCcEEEEEEccC--CccccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeC
Confidence            345777889999999  99999931      12222222  222335679999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee-------
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL-------  167 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~-------  167 (274)
                      +++|+|.+++..     ++|..+..++.|++.|++|||..+.++++|||+||+||+++.+...++. ++....       
T Consensus       765 ~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~~~  838 (968)
T PLN00113        765 IEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTKC  838 (968)
T ss_pred             CCCCcHHHHHhc-----CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccCCCc
Confidence            999999999963     8999999999999999999996555699999999999999988877765 444322       


Q ss_pred             cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-----ccC
Q 048314          168 LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-----EVD  242 (274)
Q Consensus       168 ~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  242 (274)
                      ..+..|+|||++....++.++|||||||++|||++|+.||......  ...+..|............++++.     ..+
T Consensus       839 ~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  916 (968)
T PLN00113        839 FISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGV--HGSIVEWARYCYSDCHLDMWIDPSIRGDVSVN  916 (968)
T ss_pred             cccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCC--CCcHHHHHHHhcCccchhheeCccccCCCCcc
Confidence            2257899999999888999999999999999999999999643211  122334443333222333333332     344


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .....++.+++.+||+.||++||||+||+++|
T Consensus       917 ~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L  948 (968)
T PLN00113        917 QNEIVEVMNLALHCTATDPTARPCANDVLKTL  948 (968)
T ss_pred             HHHHHHHHHHHHhhCcCCchhCcCHHHHHHHH
Confidence            56677889999999999999999999999875

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=7.2e-38  Score=272.88  Aligned_cols=223  Identities=18%  Similarity=0.167  Sum_probs=177.6

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHHHHhcCCC-CccceEeEEEEeCCcceE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTSIVSRVSW-TTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~l   90 (274)
                      +|...+.+|.|+|  |.||+|..      .++|.+     ......+.+..|+.++..++| ++|+++++++.+.+..++
T Consensus         1 ~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~l   78 (324)
T cd05587           1 DFNFLMVLGKGSF--GKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF   78 (324)
T ss_pred             CceEEEEEeeccC--eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEE
Confidence            4666788999999  99998811      111111     122334567789999999976 458889999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      ||||+++|+|.+++..  ...+++...+.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...  
T Consensus        79 v~E~~~~g~L~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~  153 (324)
T cd05587          79 VMEYVNGGDLMYHIQQ--VGKFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCKENIF  153 (324)
T ss_pred             EEcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEEcCCCCEEEeecCcceecCC
Confidence            9999999999999975  45689999999999999999999999   9999999999999999999999999987632  


Q ss_pred             ---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               +++.|+|||++....++.++|+||+||++|+|++|+.||....   .. .+...    ....       ..
T Consensus       154 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~---~~-~~~~~----i~~~-------~~  218 (324)
T cd05587         154 GGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGED---ED-ELFQS----IMEH-------NV  218 (324)
T ss_pred             CCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC---HH-HHHHH----HHcC-------CC
Confidence                     3678999999998889999999999999999999999996431   11 11100    0000       01


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCCh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSM  267 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~  267 (274)
                      ..+...+..+.+++.+||+.||.+||+.
T Consensus       219 ~~~~~~~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         219 SYPKSLSKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             CCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence            2344456788999999999999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=6.4e-38  Score=272.32  Aligned_cols=222  Identities=14%  Similarity=0.108  Sum_probs=175.4

Q ss_pred             ccCCCCCCCCcchhHHHH------HHHHHhc-----CCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR------ALMATVN-----SPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------~~~~~~~-----~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.+|.|+|  |.||++..      .++|...     .....+....|..++... +||||+++++++.+.+..++||||+
T Consensus         1 ~~lg~G~~--g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~   78 (316)
T cd05620           1 KVLGKGSF--GKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFL   78 (316)
T ss_pred             CeeeeCCC--eEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCC
Confidence            36899999  99998811      1111111     112334566788888754 7999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      ++|+|.+++..  ...+++.....++.|++.||.|||+.   +++||||||+||+++.++.++|+|||+++..       
T Consensus        79 ~~g~L~~~i~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  153 (316)
T cd05620          79 NGGDLMFHIQD--KGRFDLYRATFYAAEIVCGLQFLHSK---GIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRA  153 (316)
T ss_pred             CCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCce
Confidence            99999999975  45789999999999999999999999   9999999999999999999999999987632       


Q ss_pred             ----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          169 ----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       169 ----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                          ++..|+|||++....++.++|+||+||++|+|++|..||....   .. .+.    .....       .....+..
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~---~~-~~~----~~~~~-------~~~~~~~~  218 (316)
T cd05620         154 STFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDD---ED-ELF----ESIRV-------DTPHYPRW  218 (316)
T ss_pred             eccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC---HH-HHH----HHHHh-------CCCCCCCC
Confidence                3678999999998889999999999999999999999996431   11 111    00000       01123334


Q ss_pred             HHHHHHHHHHHhhccCCCCCCChh-hHH
Q 048314          245 NLENLVKVGLWCVQDEPALRPSMK-CVV  271 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~~-evl  271 (274)
                      .+.++.+++.+||+.||++||++. +++
T Consensus       219 ~~~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         219 ITKESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             CCHHHHHHHHHHccCCHHHcCCChHHHH
Confidence            567789999999999999999985 555

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.2e-37  Score=275.01  Aligned_cols=243  Identities=19%  Similarity=0.212  Sum_probs=180.8

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ....+|...+.+|.|+|  |.||+|..      +++|.    ........|+.++++++||||+++++++.+.+..++|+
T Consensus        63 ~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~valK~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  136 (357)
T PHA03209         63 VASLGYTVIKTLTPGSE--GRVFVATKPGQPDPVVLKI----GQKGTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVL  136 (357)
T ss_pred             hhhcCcEEEEEecCCCC--eEEEEEEECCCCceEEEEe----CCccccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEE
Confidence            34457888999999999  99999822      11111    22344568999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      |++. ++|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||.+...    
T Consensus       137 e~~~-~~l~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~  211 (357)
T PHA03209        137 PHYS-SDLYTYLTK-RSRPLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAP  211 (357)
T ss_pred             EccC-CcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEecCccccccccCc
Confidence            9985 689999876 446799999999999999999999999   9999999999999999999999999998642    


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCcc-ccCCChhhH--HHHHHHHHHHhh-----hhh--
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENME-IDASKPEEI--ILTNWVYKCFIN-----REL--  232 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~-~~~~~~~~~--~~~~~~~~~~~~-----~~~--  232 (274)
                            ++..|+|||++....++.++|+|||||++|||+++..|+. .........  .....+......     ...  
T Consensus       212 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  291 (357)
T PHA03209        212 AFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPR  291 (357)
T ss_pred             ccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCC
Confidence                  3567999999998889999999999999999998655543 221111110  000011110000     000  


Q ss_pred             -------hhhhcCC-----c-------cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 -------NKLVRGT-----E-------VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 -------~~~~~~~-----~-------~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                             ...++..     .       .....+..+.++|.+||+.||++|||+.||++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~  350 (357)
T PHA03209        292 DPGSRLVRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILN  350 (357)
T ss_pred             CCccHHHHHHHhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCCcccCcCHHHHhc
Confidence                   0000000     0       00122345677999999999999999999986

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=4.1e-38  Score=269.80  Aligned_cols=236  Identities=19%  Similarity=0.266  Sum_probs=183.8

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      ..++|...+.+|.|+|  |.||+|..           .++|......   ....+.+|+.++++++||||+++++++.+.
T Consensus         4 ~~~~~~i~~~lg~G~~--g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   81 (288)
T cd05061           4 SREKITLLRELGQGSF--GMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKG   81 (288)
T ss_pred             cHHHceeeeeecCCCC--cEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence            3567888899999999  99998721           1122222111   123467899999999999999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcE
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSA--------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA  157 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~  157 (274)
                      +..++||||+++|+|.+++....        ...+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.+
T Consensus        82 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dikp~nili~~~~~~  158 (288)
T cd05061          82 QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTV  158 (288)
T ss_pred             CCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCCChheEEEcCCCcE
Confidence            99999999999999999997532        12357788899999999999999999   99999999999999999999


Q ss_pred             EEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHH
Q 048314          158 KISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWV  223 (274)
Q Consensus       158 kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~  223 (274)
                      +++|||+++...             +..|+|||.+....++.++|+||||+++|||++ |..||....   .. ....  
T Consensus       159 ~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~---~~-~~~~--  232 (288)
T cd05061         159 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLS---NE-QVLK--  232 (288)
T ss_pred             EECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCC---HH-HHHH--
Confidence            999999876421             245999999988889999999999999999998 677885321   11 0111  


Q ss_pred             HHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          224 YKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        ....+..      ...+...+..+.+++.+||+.||++|||+.++++.|
T Consensus       233 --~~~~~~~------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l  275 (288)
T cd05061         233 --FVMDGGY------LDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL  275 (288)
T ss_pred             --HHHcCCC------CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence              0000000      012334467899999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=7.1e-38  Score=268.16  Aligned_cols=236  Identities=19%  Similarity=0.194  Sum_probs=185.5

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      ..++|...+.+|.|+|  |.||++..           .++|.....   ...+.+.+|+.++++++||||+++++++.++
T Consensus         3 ~~~~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~   80 (288)
T cd05050           3 PRNNIEYVRDIGQGAF--GRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVG   80 (288)
T ss_pred             ChHhceeccccccccc--ccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCC
Confidence            3568888999999999  99998621           111222211   1134577899999999999999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCC--------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCC
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSA--------------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIK  145 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~--------------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~  145 (274)
                      +..+++|||+++|+|.+++....                    ...+++..++.++.|++.||.|||+.   +++|+||+
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~---~i~H~dl~  157 (288)
T cd05050          81 KPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFVHRDLA  157 (288)
T ss_pred             CccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---Ceeccccc
Confidence            99999999999999999997421                    12478999999999999999999999   99999999


Q ss_pred             CCceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccC
Q 048314          146 PQNILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDA  211 (274)
Q Consensus       146 ~~nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~  211 (274)
                      |+||+++.++.++++|||.+....             +..|+|||.+....++.++|+||||+++|+|++ |..||....
T Consensus       158 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~  237 (288)
T cd05050         158 TRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA  237 (288)
T ss_pred             HhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            999999999999999999886422             235999999888889999999999999999997 777875321


Q ss_pred             CChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          212 SKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        ..+  ..    ....++...      ..+...+.++.+++.+||+.||++|||+.|+++.|
T Consensus       238 --~~~--~~----~~~~~~~~~------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l  286 (288)
T cd05050         238 --HEE--VI----YYVRDGNVL------SCPDNCPLELYNLMRLCWSKLPSDRPSFASINRIL  286 (288)
T ss_pred             --HHH--HH----HHHhcCCCC------CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHh
Confidence              111  00    111111110      12334567899999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=8e-38  Score=271.71  Aligned_cols=221  Identities=17%  Similarity=0.113  Sum_probs=175.2

Q ss_pred             cCCCCCCCCcchhHHHH------HHHHHhc-----CCCCCCcHHHHHHHHhc-CCCCccceEeEEEEeCCcceEEEEeCC
Q 048314           29 LNDRNSPRSKSVWSCMR------ALMATVN-----SPYSPSRPLTLTSIVSR-VSWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~------~~~~~~~-----~~~~~~~~~~e~~~l~~-l~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      .+|.|+|  |.||+|..      .++|.+.     .....+.+..|..++.. ++||||+++++++.+.+..++||||++
T Consensus         2 ~lG~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~   79 (316)
T cd05619           2 MLGKGSF--GKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLN   79 (316)
T ss_pred             eeeeCCC--EEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCC
Confidence            5899999  99998821      1111111     11233446678888876 489999999999999999999999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------  168 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--------  168 (274)
                      +|+|.+++..  ...+++.....++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...        
T Consensus        80 ~g~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (316)
T cd05619          80 GGDLMFHIQS--CHKFDLPRATFYAAEIICGLQFLHSK---GIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTC  154 (316)
T ss_pred             CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCcee
Confidence            9999999975  35689999999999999999999999   9999999999999999999999999987642        


Q ss_pred             ---CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHH
Q 048314          169 ---SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKN  245 (274)
Q Consensus       169 ---~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (274)
                         ++..|+|||++.+..++.++|+|||||++|+|++|..||....   .. .+...    ...   .    ....+...
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~---~~-~~~~~----i~~---~----~~~~~~~~  219 (316)
T cd05619         155 TFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHD---EE-ELFQS----IRM---D----NPCYPRWL  219 (316)
T ss_pred             eecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCC---HH-HHHHH----HHh---C----CCCCCccC
Confidence               2567999999988889999999999999999999999996431   11 11110    000   0    01123345


Q ss_pred             HHHHHHHHHHhhccCCCCCCChh-hHH
Q 048314          246 LENLVKVGLWCVQDEPALRPSMK-CVV  271 (274)
Q Consensus       246 ~~~~~~li~~cl~~dp~~Rps~~-evl  271 (274)
                      +..+.+++.+||+.||++||++. ++.
T Consensus       220 ~~~~~~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         220 TREAKDILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             CHHHHHHHHHHhccCHhhcCCChHHHH
Confidence            56789999999999999999997 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-37  Score=262.42  Aligned_cols=232  Identities=16%  Similarity=0.124  Sum_probs=185.7

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-------CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-------YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      ++|...+.+|.|++  |.||.+..      .++|.....       ...+.+.+|+.++++++||||+++++++.+.+..
T Consensus         2 ~~~~~~~~lg~g~~--~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   79 (263)
T cd06625           2 TNWRRGKLLGQGAF--GRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETL   79 (263)
T ss_pred             CcccccceecCCCc--eEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeE
Confidence            46888899999999  99998821      122221111       1123567899999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++++||+++++|.+++..  ...+++.....++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+...
T Consensus        80 ~~v~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~  154 (263)
T cd06625          80 SIFMEYMPGGSVKDQLKA--YGALTETVTRKYTRQILEGVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRL  154 (263)
T ss_pred             EEEEEECCCCcHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceec
Confidence            999999999999999975  45689999999999999999999999   9999999999999999999999999988643


Q ss_pred             C--------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 S--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .              +..|+|||.+....++.++|+||||+++|++++|+.||....   .......    . ..    .
T Consensus       155 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~---~~~~~~~----~-~~----~  222 (263)
T cd06625         155 QTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFE---AMAAIFK----I-AT----Q  222 (263)
T ss_pred             cccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccc---hHHHHHH----H-hc----c
Confidence            2              346999999998888999999999999999999999986331   1100000    0 00    0


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                       -.....+...+..+.+++.+||..+|++|||+.++++.
T Consensus       223 -~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         223 -PTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             -CCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence             00112444566789999999999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=5.7e-38  Score=267.61  Aligned_cols=236  Identities=21%  Similarity=0.218  Sum_probs=185.8

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHHHH----------HHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEe-C
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMRAL----------MATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR-G   85 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~~~----------~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~   85 (274)
                      ..++|....++|.|+|  |.||+|....          +|.....   ...+.+.+|+.++++++||||+++++++.+ +
T Consensus         4 ~~~~~~~~~~i~~g~~--g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~   81 (280)
T cd05043           4 SRDRVTLSDLLQEGTF--GRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDG   81 (280)
T ss_pred             chhheEEeeeecccCC--ceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            3567888899999999  9999983221          2212111   123446789999999999999999999876 5


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCC------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAE------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI  159 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl  159 (274)
                      ...++++||+++++|.+++.....      ..+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.+|+
T Consensus        82 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kl  158 (280)
T cd05043          82 EPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVKI  158 (280)
T ss_pred             CCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCHhhEEEcCCCcEEE
Confidence            678999999999999999976322      4589999999999999999999999   9999999999999999999999


Q ss_pred             eccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHH
Q 048314          160 SDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYK  225 (274)
Q Consensus       160 ~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~  225 (274)
                      +|||+++...             +..|+|||.+....++.++||||||+++||+++ |+.||....  .  ..+..+.  
T Consensus       159 ~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~--~~~~~~~--  232 (280)
T cd05043         159 TDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEID--P--FEMAAYL--  232 (280)
T ss_pred             CCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCC--H--HHHHHHH--
Confidence            9999987431             235999999988889999999999999999998 999986431  1  1111111  


Q ss_pred             HHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          226 CFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        ..+     ... ..+...+.++.+++.+||+.||++|||+.++++.|
T Consensus       233 --~~~-----~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l  273 (280)
T cd05043         233 --KDG-----YRL-AQPINCPDELFAVMACCWALDPEERPSFSQLVQCL  273 (280)
T ss_pred             --HcC-----CCC-CCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence              111     000 12233457899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.6e-37  Score=281.26  Aligned_cols=245  Identities=17%  Similarity=0.145  Sum_probs=181.6

Q ss_pred             hhccccccCCCCCCCCcchhHHHHHH--HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMRAL--MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWD   99 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~~~--~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs   99 (274)
                      .+|...+.+|.|+|  |.||++....  .....+......+.+|+++|++++|+|||++++++...+..++|||++. ++
T Consensus       169 ~gy~i~~~Lg~G~~--G~Vy~a~~~~~~~~vavK~~~~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~  245 (461)
T PHA03211        169 LGFAIHRALTPGSE--GCVFESSHPDYPQRVVVKAGWYASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SD  245 (461)
T ss_pred             CCeEEEEEEccCCC--eEEEEEEECCCCCEEEEecccccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC-CC
Confidence            35777889999999  9999982211  0000011233457899999999999999999999999999999999985 79


Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-----------
Q 048314          100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-----------  168 (274)
Q Consensus       100 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-----------  168 (274)
                      |.+++.. ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||+++..           
T Consensus       246 L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~  321 (461)
T PHA03211        246 LYTYLGA-RLRPLGLAQVTAVARQLLSAIDYIHGE---GIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYG  321 (461)
T ss_pred             HHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccc
Confidence            9999875 345799999999999999999999999   9999999999999999999999999998642           


Q ss_pred             --CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCCh----hhHHHHHHHHHHHhh-------------
Q 048314          169 --SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKP----EEIILTNWVYKCFIN-------------  229 (274)
Q Consensus       169 --~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~-------------  229 (274)
                        ++..|+|||++.+..++.++|||||||++|||++|..++.......    ....+...+......             
T Consensus       322 ~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~  401 (461)
T PHA03211        322 IAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLV  401 (461)
T ss_pred             cCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHH
Confidence              3678999999988889999999999999999999876654321111    111111111110000             


Q ss_pred             hhhhhh----hcCC-ccC-----HHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          230 RELNKL----VRGT-EVD-----KKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       230 ~~~~~~----~~~~-~~~-----~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ......    ..+. ..+     ......+.+|+.+||+.||.+|||+.|+++.
T Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        402 SQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             HHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence            000000    0000 000     0223468899999999999999999999874

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-38  Score=280.52  Aligned_cols=228  Identities=20%  Similarity=0.269  Sum_probs=185.3

Q ss_pred             ccCCCCCCCCcchhHH-----HHHHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCC
Q 048314           28 SLNDRNSPRSKSVWSC-----MRALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWD   99 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~-----~~~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs   99 (274)
                      +.||+|.|  |.|-.|     .++++|..+   .+..+.+|.+|+++|.+++|||||+++|+|..++..++++|||.+|+
T Consensus       544 ekiGeGqF--GEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnGD  621 (807)
T KOG1094|consen  544 EKIGEGQF--GEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENGD  621 (807)
T ss_pred             hhhcCccc--ceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcCc
Confidence            45888888  888877     223333332   22446789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----------
Q 048314          100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----------  169 (274)
Q Consensus       100 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----------  169 (274)
                      |.+|+..+....+.-...+.++.||+.|++||.+.   +++|||+.++|||++.++++||+|||.++-..          
T Consensus       622 LnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~---nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr  698 (807)
T KOG1094|consen  622 LNQFLSAHELPTAETAPGVSICTQIASGMAYLESL---NFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGR  698 (807)
T ss_pred             HHHHHHhccCcccccchhHHHHHHHHHHHHHHHhh---chhhccccccceeecCcccEEecCcccccccccCCceeeecc
Confidence            99999986444456677788999999999999999   99999999999999999999999999997432          


Q ss_pred             ---CCCcCCCcccccCCCccccceeehhHhHHHHh--hcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-----
Q 048314          170 ---DKGCMAPECYKRTPISVKADVYGYGIVLLETI--CCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-----  239 (274)
Q Consensus       170 ---~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~--~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  239 (274)
                         ..+|||+|.+..++++.++|+|+||+++||++  +...||...   ..+..          -++....++..     
T Consensus       699 ~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~l---t~e~v----------ven~~~~~~~~~~~~~  765 (807)
T KOG1094|consen  699 AVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQL---TDEQV----------VENAGEFFRDQGRQVV  765 (807)
T ss_pred             eeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhh---hHHHH----------HHhhhhhcCCCCccee
Confidence               24699999999999999999999999999975  578888532   11110          11122222222     


Q ss_pred             -ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          240 -EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       240 -~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                       ..|..++..+.++|.+||..|.++|||++++...
T Consensus       766 l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~  800 (807)
T KOG1094|consen  766 LSRPPACPQGLYELMLRCWRRESEQRPSFEQLHLF  800 (807)
T ss_pred             ccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHH
Confidence             3677888999999999999999999999998654

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=5.7e-38  Score=280.40  Aligned_cols=237  Identities=17%  Similarity=0.183  Sum_probs=185.3

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC---CCCCcHHHHHHHHhcCC-CCccceEeEEEEe
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP---YSPSRPLTLTSIVSRVS-WTTDIEVSSVAMR   84 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~---~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~   84 (274)
                      ..+++.....+|+|+|  |.||+|..           .++|.+...   ...+.+.+|+++|.++. |||||++++.|.+
T Consensus        35 ~~~~~~~~~~lG~G~f--G~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~  112 (401)
T cd05107          35 PRDNLVLGRTLGSGAF--GRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTK  112 (401)
T ss_pred             cHHHeehhhhccCCCc--eeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEcc
Confidence            3456777789999999  99998831           122222221   11235779999999998 9999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCC-------------------------------------------------------
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAE-------------------------------------------------------  109 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~-------------------------------------------------------  109 (274)
                      .+..++||||+++|+|.+++.....                                                       
T Consensus       113 ~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (401)
T cd05107         113 GGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPM  192 (401)
T ss_pred             CCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccch
Confidence            9999999999999999999975321                                                       


Q ss_pred             -----------------------------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCc
Q 048314          110 -----------------------------------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN  148 (274)
Q Consensus       110 -----------------------------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~n  148 (274)
                                                               ..+++..++.++.|++.||.|||+.   +++||||||+|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrdlkp~N  269 (401)
T cd05107         193 QDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASK---NCVHRDLAARN  269 (401)
T ss_pred             hcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CcCcccCCcce
Confidence                                                     2367888899999999999999999   99999999999


Q ss_pred             eEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCCh
Q 048314          149 ILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKP  214 (274)
Q Consensus       149 il~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~  214 (274)
                      |+++.++.++++|||+++...             +..|+|||.+....++.++|+||||+++|||++ |..||.......
T Consensus       270 iLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~  349 (401)
T cd05107         270 VLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNE  349 (401)
T ss_pred             EEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchH
Confidence            999999999999999986431             346999999988888999999999999999998 888885431111


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          215 EEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                         .+.    .....+.     . ...+...+..+.+++.+||+.+|.+|||+++|++.|
T Consensus       350 ---~~~----~~~~~~~-----~-~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L  396 (401)
T cd05107         350 ---QFY----NAIKRGY-----R-MAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLV  396 (401)
T ss_pred             ---HHH----HHHHcCC-----C-CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence               010    1111110     0 013334567899999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=1e-37  Score=272.13  Aligned_cols=243  Identities=13%  Similarity=0.046  Sum_probs=175.9

Q ss_pred             cccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCC
Q 048314           27 SSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      ..+||+|.++.+.||++..      .++|.+...    ...+.+.+|+.+++.++||||+++++++.+++..++||||++
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~   82 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMA   82 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccC
Confidence            3678999544488998821      122222211    112334579999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------  168 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--------  168 (274)
                      +|+|.+++.......+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++++||+.....        
T Consensus        83 ~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~  159 (327)
T cd08227          83 YGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLR  159 (327)
T ss_pred             CCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCChhhEEEecCCcEEEcccchhhcccccccccc
Confidence            99999999764455699999999999999999999999   9999999999999999999999998753221        


Q ss_pred             ----------CCCCcCCCccccc--CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH-HHh-----hh
Q 048314          169 ----------SDKGCMAPECYKR--TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK-CFI-----NR  230 (274)
Q Consensus       169 ----------~~~~~~ape~~~~--~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~-~~~-----~~  230 (274)
                                .+..|+|||++..  ..++.++|||||||++|+|++|..||.................. ...     ..
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (327)
T cd08227         160 VVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAE  239 (327)
T ss_pred             ccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhh
Confidence                      1345899999875  35889999999999999999999999643111100000000000 000     00


Q ss_pred             hh-------------hhh-----hcC-------CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          231 EL-------------NKL-----VRG-------TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       231 ~~-------------~~~-----~~~-------~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..             ...     ..+       .+........+.+++.+||+.||++|||++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~  306 (327)
T cd08227         240 ELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLN  306 (327)
T ss_pred             hcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhc
Confidence            00             000     000       0112234568999999999999999999999986

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=3e-38  Score=279.43  Aligned_cols=233  Identities=15%  Similarity=0.139  Sum_probs=177.7

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhc-----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN-----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.+|.|+|  |.||++..      .++|.+.     .......+.+|+.++.+++|+||+++++.+.+....++
T Consensus         1 ~~y~~~~~LG~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~l   78 (363)
T cd05628           1 EDFESLKVIGRGAF--GEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYL   78 (363)
T ss_pred             CCceEeEEEEeCCC--EEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEE
Confidence            36777889999999  99998711      1112111     11223456789999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee---
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL---  167 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~---  167 (274)
                      ||||+++|+|.+++..  .+.+++.....++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||+++.   
T Consensus        79 v~E~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH~~---givHrDlKp~NILi~~~~~vkL~DFGla~~~~~  153 (363)
T cd05628          79 IMEFLPGGDMMTLLMK--KDTLTEEETQFYIAETVLAIDSIHQL---GFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKK  153 (363)
T ss_pred             EEcCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCCEEEeeccCcccccc
Confidence            9999999999999975  45799999999999999999999999   999999999999999999999999998752   


Q ss_pred             -------------------------------------------cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcC
Q 048314          168 -------------------------------------------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCW  204 (274)
Q Consensus       168 -------------------------------------------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~  204 (274)
                                                                 .+++.|+|||++.+..++.++|+|||||++|||++|.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~  233 (363)
T cd05628         154 AHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGY  233 (363)
T ss_pred             cccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCC
Confidence                                                       2466799999999888999999999999999999999


Q ss_pred             CCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhc--cCCCCCCChhhHHh
Q 048314          205 ENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQ--DEPALRPSMKCVVM  272 (274)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~--~dp~~Rps~~evl~  272 (274)
                      .||.....  .. ..     ....... .....+  .....++.+.+++.+++.  .++..||+++||++
T Consensus       234 ~Pf~~~~~--~~-~~-----~~i~~~~-~~~~~p--~~~~~s~~~~~li~~l~~~~~~r~~r~~~~ei~~  292 (363)
T cd05628         234 PPFCSETP--QE-TY-----KKVMNWK-ETLIFP--PEVPISEKAKDLILRFCCEWEHRIGAPGVEEIKT  292 (363)
T ss_pred             CCCCCCCH--HH-HH-----HHHHcCc-CcccCC--CcCCCCHHHHHHHHHHcCChhhcCCCCCHHHHhC
Confidence            99964311  10 00     0000000 001111  111234567788877553  23445689999976

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=7.1e-38  Score=272.80  Aligned_cols=223  Identities=18%  Similarity=0.165  Sum_probs=177.2

Q ss_pred             hccccccCCCCCCCCcchhHHH------HHHHHHhc-----CCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM------RALMATVN-----SPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~-----~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~l   90 (274)
                      +|.....+|+|+|  |.||+|.      ..++|.+.     .....+.+..|..++..+. |++|+++++++.+.+..++
T Consensus         1 df~~~~~lg~G~~--g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~l   78 (323)
T cd05616           1 DFNFLMVLGKGSF--GKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYF   78 (323)
T ss_pred             CceEEEEEeeCCC--eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEE
Confidence            4667788999999  9999881      11112111     1122334567888888774 8999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      ||||+++|+|.+++..  ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...  
T Consensus        79 v~E~~~~g~L~~~~~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~  153 (323)
T cd05616          79 VMEYVNGGDLMYQIQQ--VGRFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENMW  153 (323)
T ss_pred             EEcCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEecCCCHHHeEECCCCcEEEccCCCceecCC
Confidence            9999999999999975  45689999999999999999999999   9999999999999999999999999988642  


Q ss_pred             ---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               +++.|+|||++....++.++|+|||||++|||++|..||....   .. .+..    .....       ..
T Consensus       154 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~---~~-~~~~----~i~~~-------~~  218 (323)
T cd05616         154 DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED---ED-ELFQ----SIMEH-------NV  218 (323)
T ss_pred             CCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCC---HH-HHHH----HHHhC-------CC
Confidence                     2667999999999899999999999999999999999996431   11 1111    00110       11


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCCh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSM  267 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~  267 (274)
                      ..|...+.++.+++.+||+.||++|++.
T Consensus       219 ~~p~~~s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         219 AYPKSMSKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             CCCCcCCHHHHHHHHHHcccCHHhcCCC
Confidence            2344556788999999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=6.9e-38  Score=270.42  Aligned_cols=233  Identities=18%  Similarity=0.208  Sum_probs=182.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH----------HHHHHhcCCCC---CCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR----------ALMATVNSPYS---PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      .++|...+.+|.|++  |.||+|..          .++|.......   ...+.+|+.++++++||||++++|+|... .
T Consensus         6 ~~~~~~~~~lg~G~~--g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~   82 (303)
T cd05110           6 ETELKRVKVLGSGAF--GTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-T   82 (303)
T ss_pred             hhhceeccccccCCC--ccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-C
Confidence            356777889999999  99999821          12222222111   22567899999999999999999998754 4


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++++||+++|+|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||++..
T Consensus        83 ~~~v~e~~~~g~l~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dikp~Nill~~~~~~kL~Dfg~~~~  158 (303)
T cd05110          83 IQLVTQLMPHGCLLDYVHE-HKDNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARL  158 (303)
T ss_pred             ceeeehhcCCCCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHhhc---CeeccccccceeeecCCCceEEcccccccc
Confidence            6799999999999999976 344689999999999999999999999   999999999999999999999999999864


Q ss_pred             cC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          168 LS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       168 ~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ..             +..|++||.+....++.++||||||+++||+++ |..||....  .  .....+.    ....  
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~--~--~~~~~~~----~~~~--  228 (303)
T cd05110         159 LEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP--T--REIPDLL----EKGE--  228 (303)
T ss_pred             ccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC--H--HHHHHHH----HCCC--
Confidence            32             246999999988889999999999999999987 888885331  1  1111111    1110  


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                          ....+..++..+.+++..||..+|++|||++++++.|
T Consensus       229 ----~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l  265 (303)
T cd05110         229 ----RLPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEF  265 (303)
T ss_pred             ----CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence                0012233456789999999999999999999998764

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=8.3e-38  Score=270.60  Aligned_cols=245  Identities=17%  Similarity=0.171  Sum_probs=184.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ++|...+.+|.|+|  |.||++..      .+++.....   ...+++.+|++++++++||||+++++.+.+++..++||
T Consensus         1 ~~~~~~~~lg~G~~--g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   78 (308)
T cd06615           1 DDFEKLGELGAGNG--GVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICM   78 (308)
T ss_pred             CCceEEeeccCCCC--eEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEe
Confidence            36778889999999  99998721      112222111   11244678999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      ||+++++|.+++..  ...+++..+..++.|++.||.|||+ .   +++|+|++|+||+++.++.++++|||.+...   
T Consensus        79 ey~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  153 (308)
T cd06615          79 EHMDGGSLDQVLKK--AGRIPENILGKISIAVLRGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  153 (308)
T ss_pred             eccCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhhC---CEEECCCChHHEEEecCCcEEEccCCCccccccc
Confidence            99999999999975  3678999999999999999999997 5   8999999999999999999999999987643   


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH---------------
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF---------------  227 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~---------------  227 (274)
                            ++..|+|||.+.+..++.++|+||||+++|+|++|..||...........+........               
T Consensus       154 ~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (308)
T cd06615         154 MANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDS  233 (308)
T ss_pred             ccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCc
Confidence                  25679999998887889999999999999999999999864321110000000000000               


Q ss_pred             -----hhhhhhhhhc---CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          228 -----INRELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       228 -----~~~~~~~~~~---~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                           ..........   +.......+.++.+++.+||..||++|||+++|++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  287 (308)
T cd06615         234 PRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKH  287 (308)
T ss_pred             cchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                 0000000000   000111245679999999999999999999999864

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=1.1e-37  Score=276.40  Aligned_cols=238  Identities=14%  Similarity=0.078  Sum_probs=182.3

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHH------HHHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCM------RALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      +....++|...+.+|.|+|  |.||++.      ..++|.     .......+.+.+|+.+++.++||||+++++++.++
T Consensus        38 ~~~~~~~y~~~~~lG~G~f--g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~  115 (370)
T cd05621          38 LQMKAEDYDVVKVIGRGAF--GEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDD  115 (370)
T ss_pred             cCCCHHHCeEEEEEEecCC--eEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcC
Confidence            4445578888899999999  9999771      111111     11112334467899999999999999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      +..++||||+++|+|.+++..   ..+++.....++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus       116 ~~~~lv~Ey~~gg~L~~~l~~---~~~~~~~~~~~~~qil~aL~~LH~~---~IvHrDLKp~NILl~~~~~~kL~DFG~a  189 (370)
T cd05621         116 KYLYMVMEYMPGGDLVNLMSN---YDVPEKWAKFYTAEVVLALDAIHSM---GLIHRDVKPDNMLLDKHGHLKLADFGTC  189 (370)
T ss_pred             CEEEEEEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEEecccc
Confidence            999999999999999999965   3589999999999999999999999   9999999999999999999999999998


Q ss_pred             eec------------CCCCcCCCcccccC----CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh
Q 048314          166 KLL------------SDKGCMAPECYKRT----PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN  229 (274)
Q Consensus       166 ~~~------------~~~~~~ape~~~~~----~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                      ...            +++.|+|||++...    .++.++|+||+||++|+|++|..||.....   .....    .....
T Consensus       190 ~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~---~~~~~----~i~~~  262 (370)
T cd05621         190 MKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSL---VGTYS----KIMDH  262 (370)
T ss_pred             eecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCH---HHHHH----HHHhC
Confidence            643            36679999998654    377899999999999999999999964311   11010    00000


Q ss_pred             hhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCC--CCChhhHHhh
Q 048314          230 RELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL--RPSMKCVVMM  273 (274)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~evl~~  273 (274)
                      ..  ....  +.+...+..+.+++..||..++.+  |||+.|+++.
T Consensus       263 ~~--~~~~--p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         263 KN--SLNF--PEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             Cc--ccCC--CCcccCCHHHHHHHHHHccCchhccCCCCHHHHhcC
Confidence            00  0000  112234677889999999865543  8999998863

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=1.5e-37  Score=266.01  Aligned_cols=233  Identities=18%  Similarity=0.199  Sum_probs=181.8

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhc-----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVN-----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      |...+.+|.|+|  |.||++..      .++|...     .......+.+|+.++++++|+||+.+++.+.+++..+++|
T Consensus         2 ~~~~~~lg~G~~--g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~   79 (285)
T cd05632           2 FRQYRVLGKGGF--GEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVL   79 (285)
T ss_pred             ceEEEEEecCCC--eEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEE
Confidence            455678999999  99998711      1112111     1122344678999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      ||+++++|.+++.......+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...    
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~  156 (285)
T cd05632          80 TIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGE  156 (285)
T ss_pred             EeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEECCCCCEEEecCCcceecCCCC
Confidence            999999999999764445799999999999999999999999   9999999999999999999999999988543    


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            ++..|+|||.+....++.++|+||||+++|++++|..||.....   ....... ..     .....  ....+
T Consensus       157 ~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~---~~~~~~~-~~-----~~~~~--~~~~~  225 (285)
T cd05632         157 SIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKE---KVKREEV-DR-----RVLET--EEVYS  225 (285)
T ss_pred             cccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCH---HHHHHHH-HH-----hhhcc--ccccC
Confidence                  25679999999888899999999999999999999999964311   1000000 00     00000  00133


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCC-----hhhHHh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPS-----MKCVVM  272 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps-----~~evl~  272 (274)
                      ...+..+.+++..||+.||++|||     ++++++
T Consensus       226 ~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05632         226 AKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKR  260 (285)
T ss_pred             ccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHc
Confidence            345567899999999999999999     666654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=1.4e-37  Score=264.39  Aligned_cols=235  Identities=18%  Similarity=0.177  Sum_probs=185.2

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCCCC---CCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSPYS---PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      .+|.....+|.|+|  |.||++..           .++|.......   .+++.+|+.++++++|+||+++++++.+.+.
T Consensus         5 ~~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   82 (275)
T cd05046           5 SNLQEITTLGRGEF--GEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEP   82 (275)
T ss_pred             Hhceeeeeecccce--eEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCc
Confidence            57778889999999  99998842           11222222211   2457899999999999999999999999899


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCC-------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 048314           88 PSTEAALDLPWDLAYIIFCSAE-------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKIS  160 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~  160 (274)
                      .++||||+++|+|.+++.....       ..+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++++
T Consensus        83 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~  159 (275)
T cd05046          83 HYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQREVKVS  159 (275)
T ss_pred             ceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc---CcccCcCccceEEEeCCCcEEEc
Confidence            9999999999999999986431       1589999999999999999999999   99999999999999999999999


Q ss_pred             ccccceecC------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHH
Q 048314          161 DFGLAKLLS------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCF  227 (274)
Q Consensus       161 d~g~~~~~~------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~  227 (274)
                      |||++....            +..|++||.+.....+.++|+||||++++++++ |..||....   ... ..    ...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~---~~~-~~----~~~  231 (275)
T cd05046         160 LLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLS---DEE-VL----NRL  231 (275)
T ss_pred             ccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccc---hHH-HH----HHH
Confidence            999875432            234999999888888899999999999999998 777885321   111 10    001


Q ss_pred             hhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          228 INRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ......     ...+...+..+.+++.+||+.||++|||+.|++..|
T Consensus       232 ~~~~~~-----~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l  273 (275)
T cd05046         232 QAGKLE-----LPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSAL  273 (275)
T ss_pred             HcCCcC-----CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHh
Confidence            111110     012334567899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=1.1e-37  Score=272.21  Aligned_cols=225  Identities=16%  Similarity=0.179  Sum_probs=176.0

Q ss_pred             ccCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.+|+|+|  |.||++..      .++|.+     ......+.+.+|+.++.++ +||||+++++++.+.+..++||||+
T Consensus         1 ~~lG~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   78 (327)
T cd05617           1 RVIGRGSY--AKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYV   78 (327)
T ss_pred             CeeeeCCC--eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCC
Confidence            36899999  99998811      111111     1112334567899999888 5999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      ++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...       
T Consensus        79 ~~~~L~~~~~~--~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~  153 (327)
T cd05617          79 NGGDLMFHMQR--QRKLPEEHARFYAAEICIALNFLHER---GIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTT  153 (327)
T ss_pred             CCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCce
Confidence            99999999875  45799999999999999999999999   9999999999999999999999999988642       


Q ss_pred             ----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          169 ----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       169 ----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                          +++.|+|||++....++.++|+||||+++|+|++|..||........ .............       .+...|..
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~-~~~~~~~~~~~~~-------~~~~~p~~  225 (327)
T cd05617         154 STFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPD-MNTEDYLFQVILE-------KPIRIPRF  225 (327)
T ss_pred             ecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcc-cccHHHHHHHHHh-------CCCCCCCC
Confidence                36679999999988999999999999999999999999964322111 0111111111111       11124445


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCh
Q 048314          245 NLENLVKVGLWCVQDEPALRPSM  267 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~  267 (274)
                      .+..+.+++.+||+.||++||++
T Consensus       226 ~~~~~~~li~~~L~~dP~~R~~~  248 (327)
T cd05617         226 LSVKASHVLKGFLNKDPKERLGC  248 (327)
T ss_pred             CCHHHHHHHHHHhccCHHHcCCC
Confidence            56778999999999999999985

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=7.7e-38  Score=265.15  Aligned_cols=240  Identities=16%  Similarity=0.142  Sum_probs=186.8

Q ss_pred             hHHHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           16 SLCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        16 ~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      |+.-+++++.....+|+|+|  |.||+|..      .+++.....  ...+.+.+|+.++++++|+||+++++++.+++.
T Consensus         2 ~~~~~~~~~~~~~~lg~g~~--g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   79 (268)
T cd06624           2 EYEYEYDENGERVVLGKGTY--GIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGF   79 (268)
T ss_pred             CcccccccCCceEEEecCCc--eEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCE
Confidence            34556788888899999999  99999931      112211111  223457799999999999999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEecccc
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNP--YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKISDFGL  164 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l--~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~d~g~  164 (274)
                      .++++||+++++|.+++... ...+  ++..+..++.|++.||.|||+.   +++|+|++|+||+++. ++.++|+|||.
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~h~dl~p~nil~~~~~~~~~l~dfg~  155 (268)
T cd06624          80 FKIFMEQVPGGSLSALLRSK-WGPLKDNEQTIIFYTKQILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKISDFGT  155 (268)
T ss_pred             EEEEEecCCCCCHHHHHHHh-cccCCCcHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCeEEEecchh
Confidence            99999999999999999862 2345  8888999999999999999999   9999999999999976 67899999998


Q ss_pred             ceec-----------CCCCcCCCcccccCC--CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhh
Q 048314          165 AKLL-----------SDKGCMAPECYKRTP--ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRE  231 (274)
Q Consensus       165 ~~~~-----------~~~~~~ape~~~~~~--~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  231 (274)
                      +...           ++..|+|||.+....  ++.++|+||||+++|+|++|..||..........    +  .   .. 
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~----~--~---~~-  225 (268)
T cd06624         156 SKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAM----F--K---VG-  225 (268)
T ss_pred             heecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhH----h--h---hh-
Confidence            7543           256799999986543  7889999999999999999999986432111100    0  0   00 


Q ss_pred             hhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          232 LNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ..  -.....+......+.+++.+||+.+|++|||+.|+++.
T Consensus       226 ~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  265 (268)
T cd06624         226 MF--KIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQD  265 (268)
T ss_pred             hh--ccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHhC
Confidence            00  00112444566789999999999999999999999863

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=2e-37  Score=260.69  Aligned_cols=233  Identities=20%  Similarity=0.199  Sum_probs=184.5

Q ss_pred             hccccccCCCCCCCCcchhHH------HHHHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC------MRALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|...+++|.|.+  |.||.+      ...++|...    +....+++.+|+.++++++|+||+++++++.+.+..+++|
T Consensus         1 ~y~~~~~ig~g~~--g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~   78 (256)
T cd08221           1 HYIPIRVLGKGAF--GEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEM   78 (256)
T ss_pred             CceEeeEecccCC--ceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEE
Confidence            3566788999999  766555      111122111    1123345779999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      ||+++++|.+++.......+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.+|++|||.+...    
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~  155 (256)
T cd08221          79 EYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEY  155 (256)
T ss_pred             EecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChHhEEEeCCCCEEECcCcceEEccccc
Confidence            999999999999875456689999999999999999999999   9999999999999999999999999987653    


Q ss_pred             -------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          169 -------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       169 -------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +++.|+|||.+.+..++.++|+||||+++++|++|..||......       ...... ..+..      ...
T Consensus       156 ~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~-------~~~~~~-~~~~~------~~~  221 (256)
T cd08221         156 SMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPL-------NLVVKI-VQGNY------TPV  221 (256)
T ss_pred             ccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHH-------HHHHHH-HcCCC------CCC
Confidence                   256799999998878889999999999999999999999643110       000000 01100      112


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+..+.+++.+||+.||++|||+.++++.+
T Consensus       222 ~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~  254 (256)
T cd08221         222 VSVYSSELISLVHSLLQQDPEKRPTADEVLDQP  254 (256)
T ss_pred             ccccCHHHHHHHHHHcccCcccCCCHHHHhhCc
Confidence            334567799999999999999999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=1.7e-37  Score=268.62  Aligned_cols=244  Identities=15%  Similarity=0.163  Sum_probs=181.4

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .+|...+.+|.|+|  |.||+|..      .++|.+.   .......+.+|+.++++++||||+++++++.+++..++||
T Consensus         6 ~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   83 (309)
T cd07872           6 ETYIKLEKLGEGTY--ATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVF   83 (309)
T ss_pred             CceEEEEEecccCC--EEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEE
Confidence            46777889999999  99998821      1222222   1122345779999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++ +|.+++.. ....+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++....   
T Consensus        84 e~~~~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~  158 (309)
T cd07872          84 EYLDK-DLKQYMDD-CGNIMSMHNVKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSVPT  158 (309)
T ss_pred             eCCCC-CHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECccccceecCCCc
Confidence            99975 89888875 345689999999999999999999999   99999999999999999999999999986432   


Q ss_pred             --------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH-------HHHHHhh-hhh
Q 048314          170 --------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW-------VYKCFIN-REL  232 (274)
Q Consensus       170 --------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~-------~~~~~~~-~~~  232 (274)
                              +..|+|||.+.. ..++.++|+||||+++|+|++|+.||...............       .++.... ...
T Consensus       159 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
T cd07872         159 KTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEF  238 (309)
T ss_pred             cccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhh
Confidence                    456999998865 45789999999999999999999999644221110000000       0000000 000


Q ss_pred             hhhhcCC-------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 NKLVRGT-------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 ~~~~~~~-------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...-.+.       ......+.++.+++.+||+.||.+|||+.|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  285 (309)
T cd07872         239 KNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK  285 (309)
T ss_pred             hhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence            0000000       011123567899999999999999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=8e-38  Score=264.80  Aligned_cols=236  Identities=17%  Similarity=0.100  Sum_probs=183.5

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .++|.....+|.|+|  |.||+|..      .++|.....  ...+.+.+|+.++++++||||+++++++...+..++||
T Consensus         8 ~~~y~~~~~lg~g~~--g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~   85 (267)
T cd06646           8 QHDYELIQRVGSGTY--GDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICM   85 (267)
T ss_pred             hhhcchhheeecCCC--eEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEE
Confidence            356888899999999  99999831      222222221  22344668999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++++|.+++..  ...+++..+..++.|++.|+.|||+.   +++|+|++|.||+++.++.++++|||.+....   
T Consensus        86 e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd06646          86 EYCGGGSLQDIYHV--TGPLSELQIAYVCRETLQGLAYLHSK---GKMHRDIKGANILLTDNGDVKLADFGVAAKITATI  160 (267)
T ss_pred             eCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEECcCccceeecccc
Confidence            99999999999975  45789999999999999999999999   99999999999999999999999999886432   


Q ss_pred             --------CCCcCCCcccc---cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          170 --------DKGCMAPECYK---RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       170 --------~~~~~ape~~~---~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                              +..|+|||.+.   ...++.++|+||||+++|+|++|..||..... ...  ...     ....   ....+
T Consensus       161 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~-~~~--~~~-----~~~~---~~~~~  229 (267)
T cd06646         161 AKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHP-MRA--LFL-----MSKS---NFQPP  229 (267)
T ss_pred             cccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccch-hhh--hee-----eecC---CCCCC
Confidence                    35699999874   34467899999999999999999999853210 000  000     0000   00000


Q ss_pred             C-ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          239 T-EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       239 ~-~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      . ......+..+.+++.+||+.||++|||++++++.|
T Consensus       230 ~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         230 KLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             CCccccccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence            0 11123457899999999999999999999999865

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.2e-37  Score=264.31  Aligned_cols=233  Identities=15%  Similarity=0.170  Sum_probs=183.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      .++|.....+|.|++  |.||+|..         +++|.....   ...+.+.+|+.++++++||||+++++++.+ +..
T Consensus         5 ~~~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~   81 (270)
T cd05056           5 REDITLGRCIGEGQF--GDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPV   81 (270)
T ss_pred             hhhceeeeeeCCccc--eeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCc
Confidence            345677889999999  99998831         122222221   123467899999999999999999998875 557


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||++...
T Consensus        82 ~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~  157 (270)
T cd05056          82 WIVMELAPLGELRSYLQV-NKYSLDLASLILYSYQLSTALAYLESK---RFVHRDIAARNVLVSSPDCVKLGDFGLSRYL  157 (270)
T ss_pred             EEEEEcCCCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccChheEEEecCCCeEEccCceeeec
Confidence            899999999999999976 334689999999999999999999999   9999999999999999999999999998653


Q ss_pred             C------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          169 S------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       169 ~------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      .            ...|+|||.+....++.++|+||||++++++++ |..||......    .....    ...+.    
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~----~~~~~----~~~~~----  225 (270)
T cd05056         158 EDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNN----DVIGR----IENGE----  225 (270)
T ss_pred             ccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHH----HHHHH----HHcCC----
Confidence            2            236999999888888999999999999999886 99999644111    11010    01100    


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        ....+...+..+.+++.+||..+|++|||+.++++.|
T Consensus       226 --~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l  262 (270)
T cd05056         226 --RLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQL  262 (270)
T ss_pred             --cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence              1123345567899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-37  Score=260.04  Aligned_cols=228  Identities=20%  Similarity=0.204  Sum_probs=184.0

Q ss_pred             ccCCCCCCCCcchhHHHHH---------HHHHhcCCCC---CCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMRA---------LMATVNSPYS---PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~~---------~~~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.+|.|+|  |.||++...         ++|.......   .+.+.+|+++++.++|+||+++++++.+....+++|||+
T Consensus         1 ~~ig~g~~--g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   78 (262)
T cd00192           1 KKLGEGAF--GEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYM   78 (262)
T ss_pred             CccccCCc--eEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEec
Confidence            36899999  999998332         1222222211   356778999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhCC-------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           96 LPWDLAYIIFCSA-------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++++|.+++....       ...+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+...
T Consensus        79 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~  155 (262)
T cd00192          79 EGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK---KFVHRDLAARNCLVGEDLVVKISDFGLSRDV  155 (262)
T ss_pred             cCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC---CcccCccCcceEEECCCCcEEEccccccccc
Confidence            9999999998631       36799999999999999999999999   9999999999999999999999999998754


Q ss_pred             C-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 S-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .             +..|+|||.+....++.++|+||+|+++++|++ |..||....    ...+.    ......    
T Consensus       156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~----~~~~~----~~~~~~----  223 (262)
T cd00192         156 YDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLS----NEEVL----EYLRKG----  223 (262)
T ss_pred             ccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCC----HHHHH----HHHHcC----
Confidence            3             346999999988888999999999999999998 588886441    11111    111110    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .....+...+.++.+++.+||+.||++|||+.|+++.|
T Consensus       224 --~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l  261 (262)
T cd00192         224 --YRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERL  261 (262)
T ss_pred             --CCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence              01124445578899999999999999999999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=2.4e-37  Score=262.46  Aligned_cols=231  Identities=16%  Similarity=0.140  Sum_probs=173.3

Q ss_pred             cCCCCCCCCcchhHHHH--------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCC
Q 048314           29 LNDRNSPRSKSVWSCMR--------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLP   97 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~--------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~   97 (274)
                      .+|+|+|  |.||+|..        .+++.....   ...+.+.+|+.+++.++||||+++++.|.+....++||||+++
T Consensus         2 ~lg~G~~--g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   79 (268)
T cd05086           2 EIGNGWF--GKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCEL   79 (268)
T ss_pred             cCCCCcC--ceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCC
Confidence            5899999  99998721        111111111   2235678999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           98 WDLAYIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        98 gsL~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      |+|.+++.+..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++++|||++...       
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~  156 (268)
T cd05086          80 GDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH---NFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIE  156 (268)
T ss_pred             CcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CeeccCCccceEEEcCCccEEecccccccccCcchhhh
Confidence            99999998632  23467788889999999999999999   9999999999999999999999999987531       


Q ss_pred             ------CCCCcCCCccccc-------CCCccccceeehhHhHHHHhhc-CCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 ------SDKGCMAPECYKR-------TPISVKADVYGYGIVLLETICC-WENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ------~~~~~~ape~~~~-------~~~~~~~Di~s~G~~l~el~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                            .+..|+|||++..       ..++.++|+||||+++|||+++ ..||... ..  ...+.    .. ..+....
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~-~~--~~~~~----~~-~~~~~~~  228 (268)
T cd05086         157 TEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHL-SD--REVLN----HV-IKDQQVK  228 (268)
T ss_pred             cccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCC-CH--HHHHH----HH-Hhhcccc
Confidence                  1357999998743       2357889999999999999874 6677432 11  11111    11 1111112


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..++. .+....+.+.+++..|| .+|++|||+++|++.|
T Consensus       229 ~~~~~-~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l  266 (268)
T cd05086         229 LFKPQ-LELPYSERWYEVLQFCW-LSPEKRATAEEVHRLL  266 (268)
T ss_pred             cCCCc-cCCCCcHHHHHHHHHHh-hCcccCCCHHHHHHHh
Confidence            22222 22235567888999999 6799999999999876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=9.5e-38  Score=271.73  Aligned_cols=219  Identities=17%  Similarity=0.152  Sum_probs=172.4

Q ss_pred             ccCCCCCCCCcchhHHHH------HHHHH-----hcCCCCCCcHHHHHH-HHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR------ALMAT-----VNSPYSPSRPLTLTS-IVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------~~~~~-----~~~~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      ++||.|+|  |.||++..      .++|.     .........+.+|.. +++.++||||+++++++.+.+..++||||+
T Consensus         1 ~~lg~G~~--g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   78 (321)
T cd05603           1 KVIGKGSF--GKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYV   78 (321)
T ss_pred             CeeeeCCC--EEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCC
Confidence            36899999  99998821      11111     111122334455554 678899999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      ++|+|.+++..  ...+++.....++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...       
T Consensus        79 ~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~  153 (321)
T cd05603          79 NGGELFFHLQR--ERCFLEPRARFYAAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETT  153 (321)
T ss_pred             CCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCcc
Confidence            99999998875  45689999999999999999999999   9999999999999999999999999987642       


Q ss_pred             ----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          169 ----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       169 ----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                          +++.|+|||.+....++.++|+|||||++|+|++|..||.....    ..+.    .....       .+...+..
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~----~~~~----~~i~~-------~~~~~~~~  218 (321)
T cd05603         154 STFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDV----SQMY----DNILH-------KPLQLPGG  218 (321)
T ss_pred             ccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCH----HHHH----HHHhc-------CCCCCCCC
Confidence                25679999999888899999999999999999999999964311    0010    00000       11134445


Q ss_pred             HHHHHHHHHHHhhccCCCCCCChh
Q 048314          245 NLENLVKVGLWCVQDEPALRPSMK  268 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~~  268 (274)
                      ....+.+++.+||+.||.+||++.
T Consensus       219 ~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         219 KTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CCHHHHHHHHHHccCCHhhcCCCC
Confidence            567899999999999999999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-37  Score=265.63  Aligned_cols=232  Identities=18%  Similarity=0.190  Sum_probs=184.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH----------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR----------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      ++|.....+|.|+|  |.||+|..          .++|.....   .....+.+|+.++++++||||+++++++.. ...
T Consensus         7 ~~~~~~~~ig~g~~--g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~   83 (279)
T cd05057           7 TELEKIKVLGSGAF--GTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQV   83 (279)
T ss_pred             HHcEEcceecCCCC--ccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-Cce
Confidence            56677788999999  99998731          111212111   122456789999999999999999999987 789


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||||+++|+|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.++..
T Consensus        84 ~~v~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kL~dfg~~~~~  159 (279)
T cd05057          84 QLITQLMPLGCLLDYVRN-HKDNIGSQYLLNWCVQIAKGMSYLEEK---RLVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (279)
T ss_pred             EEEEecCCCCcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEecccCcceEEEcCCCeEEECCCcccccc
Confidence            999999999999999986 344699999999999999999999999   9999999999999999999999999998653


Q ss_pred             C-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 S-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .             +..|++||.+....++.++|+||||+++||+++ |..||.....  .  .+..    .....    
T Consensus       160 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~--~~~~----~~~~~----  227 (279)
T cd05057         160 DVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPA--V--EIPD----LLEKG----  227 (279)
T ss_pred             cCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCH--H--HHHH----HHhCC----
Confidence            2             235999999988888999999999999999998 9999864311  1  1111    11110    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .....+..++..+.+++.+||..||.+|||+.++++.|
T Consensus       228 --~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l  265 (279)
T cd05057         228 --ERLPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEF  265 (279)
T ss_pred             --CCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence              01123334557789999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=6.2e-38  Score=260.00  Aligned_cols=242  Identities=18%  Similarity=0.161  Sum_probs=184.7

Q ss_pred             HHhhhccccccCCCCCCCCcchhHH-------HHHHHHHhcCCCCCCcH----HHHHHHHhcCCCCccceEeEEEE--eC
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSPYSPSRP----LTLTSIVSRVSWTTDIEVSSVAM--RG   85 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~~~~~~~----~~e~~~l~~l~h~niv~l~~~~~--~~   85 (274)
                      ....+|...+.|++|+|  |.||+|       .+|.|+ ++-....+.|    ++||.+|.+++|||||.+-.+..  +-
T Consensus        73 rsv~efe~lnrI~EGty--GiVYRakdk~t~eIVALKr-~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~  149 (419)
T KOG0663|consen   73 RSVEEFEKLNRIEEGTY--GVVYRAKDKKTDEIVALKR-LKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNM  149 (419)
T ss_pred             ccHHHHHHHhhcccCcc--eeEEEeccCCcceeEEeee-cccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEecccc
Confidence            34467777888999999  999999       233333 2222233334    69999999999999999988764  45


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      +..|||||||.+ +|...+.. -.+++...+++.+..|++.|+.|||++   .|+|||||++|+|+...|.+|++|||++
T Consensus       150 d~iy~VMe~~Eh-DLksl~d~-m~q~F~~~evK~L~~QlL~glk~lH~~---wilHRDLK~SNLLm~~~G~lKiaDFGLA  224 (419)
T KOG0663|consen  150 DKIYIVMEYVEH-DLKSLMET-MKQPFLPGEVKTLMLQLLRGLKHLHDN---WILHRDLKTSNLLLSHKGILKIADFGLA  224 (419)
T ss_pred             ceeeeeHHHHHh-hHHHHHHh-ccCCCchHHHHHHHHHHHHHHHHHhhc---eeEecccchhheeeccCCcEEecccchh
Confidence            679999999975 89999987 346899999999999999999999999   9999999999999999999999999999


Q ss_pred             eecCC-----------CCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh----
Q 048314          166 KLLSD-----------KGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN----  229 (274)
Q Consensus       166 ~~~~~-----------~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~----  229 (274)
                      +..+.           .-|+|||.+.+. .|+...|+||+||++.|++.+++.|... ++..+.   +-+...+..    
T Consensus       225 R~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~-sE~dQl---~~If~llGtPte~  300 (419)
T KOG0663|consen  225 REYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGK-SEIDQL---DKIFKLLGTPSEA  300 (419)
T ss_pred             hhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCC-chHHHH---HHHHHHhCCCccc
Confidence            87763           359999999876 5899999999999999999999999654 222221   111111100    


Q ss_pred             -------hhhh-hhhcCC--------ccCHH-HHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          230 -------RELN-KLVRGT--------EVDKK-NLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       230 -------~~~~-~~~~~~--------~~~~~-~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                             -..- .+-.+.        .++.. .++.-.+|+..+|..||.+|.|+.|.|+
T Consensus       301 iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~  360 (419)
T KOG0663|consen  301 IWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLK  360 (419)
T ss_pred             cCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhc
Confidence                   0000 000000        01111 3467789999999999999999999875

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.9e-37  Score=277.03  Aligned_cols=244  Identities=19%  Similarity=0.167  Sum_probs=184.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHHHH----HHH-HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMRA----LMA-TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~~----~~~-~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      ...|...+.+|.|+|  |.||++...    ..+ .++.....+...+|+++|++++||||+++++++......+++||++
T Consensus        91 ~~~y~i~~~Lg~G~~--g~Vy~~~~~~~~~~~~v~vK~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~  168 (392)
T PHA03207         91 RMQYNILSSLTPGSE--GEVFVCTKHGDEQRKKVIVKAVTGGKTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKY  168 (392)
T ss_pred             cCceEEEEeecCCCC--eEEEEEEEcCCccceeEEEEeccccccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhc
Confidence            346888899999999  999987211    111 1111122345678999999999999999999999999999999998


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      . ++|.+++..  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||++...       
T Consensus       169 ~-~~l~~~l~~--~~~l~~~~~~~i~~ql~~aL~~LH~~---givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~  242 (392)
T PHA03207        169 K-CDLFTYVDR--SGPLPLEQAITIQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTP  242 (392)
T ss_pred             C-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEccCccccccCcccccc
Confidence            6 689998853  56799999999999999999999999   9999999999999999999999999987532       


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh------------
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR------------  230 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~------------  230 (274)
                            ++..|+|||++....++.++|||||||++|||++|+.||...........+...... ....            
T Consensus       243 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~  321 (392)
T PHA03207        243 QCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRC-MQVHPLEFPQNGSTNL  321 (392)
T ss_pred             cccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHH-hccCccccCCccchhH
Confidence                  366799999999888999999999999999999999999754332211111111110 0000            


Q ss_pred             --h---hhhhhcCC-ccC-----HHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          231 --E---LNKLVRGT-EVD-----KKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       231 --~---~~~~~~~~-~~~-----~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                        .   .....++. ..+     .....++.+++.+||..||++|||+.|++..
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        322 CKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             HHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence              0   00000000 000     1234578899999999999999999999863

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=9.1e-38  Score=273.29  Aligned_cols=234  Identities=19%  Similarity=0.192  Sum_probs=184.7

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-------------HHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEEe
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-------------ALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMR   84 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-------------~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~   84 (274)
                      .+|...+.+|.|+|  |.||++..             .++|.....   ...+.+.+|+++++++ +||||++++++|.+
T Consensus        12 ~~~~i~~~ig~G~~--g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~   89 (334)
T cd05100          12 TRLTLGKPLGEGCF--GQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ   89 (334)
T ss_pred             hHeeecceeccccC--CcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEcc
Confidence            45777889999999  99997731             112222211   1234577999999999 79999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceE
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNIL  150 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil  150 (274)
                      .+..++++||+++|+|.+++....              ...+++..++.++.|++.||.|||+.   +++|+||||+||+
T Consensus        90 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nil  166 (334)
T cd05100          90 DGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ---KCIHRDLAARNVL  166 (334)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEE
Confidence            999999999999999999997532              23488999999999999999999999   9999999999999


Q ss_pred             EcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhh
Q 048314          151 MDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEE  216 (274)
Q Consensus       151 ~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~  216 (274)
                      ++.++.++|+|||+++...             +..|+|||.+....++.++|+||||+++|||++ |..||....   ..
T Consensus       167 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~---~~  243 (334)
T cd05100         167 VTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP---VE  243 (334)
T ss_pred             EcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC---HH
Confidence            9999999999999986432             235999999988889999999999999999998 788885331   11


Q ss_pred             HHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          217 IILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      . ..    .......      ....+...+..+.+++.+||+.+|++|||+.|+++.|
T Consensus       244 ~-~~----~~~~~~~------~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l  290 (334)
T cd05100         244 E-LF----KLLKEGH------RMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDL  290 (334)
T ss_pred             H-HH----HHHHcCC------CCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHH
Confidence            1 10    0011100      0123345567899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=3.5e-37  Score=260.72  Aligned_cols=229  Identities=20%  Similarity=0.192  Sum_probs=182.3

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhcCC-CC----------CCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-YS----------PSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-~~----------~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      |...+.+|.|++  |.||+|..      .+++..... ..          .+.+.+|+.++++++||||+++++++.+.+
T Consensus         2 ~~~~~~ig~g~~--~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   79 (267)
T cd06628           2 WIKGALIGSGSF--GSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDAD   79 (267)
T ss_pred             ccccceeecCCC--eEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCC
Confidence            344678999999  99999832      112211111 11          134668999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++++||+++++|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.++
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~~l~~~l~~lH~~---~ivH~di~p~nil~~~~~~~~l~dfg~~~  154 (267)
T cd06628          80 HLNIFLEYVPGGSVAALLNN--YGAFEETLVRNFVRQILKGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDFGISK  154 (267)
T ss_pred             ccEEEEEecCCCCHHHHHHh--ccCccHHHHHHHHHHHHHHHHHHHhc---CcccccCCHHHEEEcCCCCEEecccCCCc
Confidence            99999999999999999975  35689999999999999999999999   99999999999999999999999999875


Q ss_pred             ecC-----------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh
Q 048314          167 LLS-----------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN  229 (274)
Q Consensus       167 ~~~-----------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                      ...                 +..|+|||.+....++.++|+||||+++|+|++|..||.....   .....    .    
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~---~~~~~----~----  223 (267)
T cd06628         155 KLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQ---LQAIF----K----  223 (267)
T ss_pred             ccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccH---HHHHH----H----
Confidence            432                 3469999999888889999999999999999999999964311   00000    0    


Q ss_pred             hhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          230 RELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                        ...... ...+...+..+.+++.+||+.||.+||++.|+++.
T Consensus       224 --~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  264 (267)
T cd06628         224 --IGENAS-PEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLKH  264 (267)
T ss_pred             --HhccCC-CcCCcccCHHHHHHHHHHccCCchhCcCHHHHhhC
Confidence              001111 12444566889999999999999999999999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=4.5e-38  Score=288.23  Aligned_cols=238  Identities=18%  Similarity=0.203  Sum_probs=186.1

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      .....++|...+.||.|+|  |.||++..      .++|.+...    .....+.+|+.++..++|+||++++..+...+
T Consensus        27 ~~~~~~rY~i~~~LG~G~f--G~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~  104 (496)
T PTZ00283         27 AKEQAKKYWISRVLGSGAT--GTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKD  104 (496)
T ss_pred             ccccCCCEEEEEEEecCCC--EEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceeccc
Confidence            3445578888999999999  99998821      122222211    12344678999999999999999988764322


Q ss_pred             --------cceEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 048314           87 --------KPSTEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT  156 (274)
Q Consensus        87 --------~~~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~  156 (274)
                              ..++||||+++|+|.+++...  ....+++..+..++.|++.||.|||+.   +++||||||+||+++.++.
T Consensus       105 ~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~---~IiHrDLKP~NILl~~~~~  181 (496)
T PTZ00283        105 PRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK---HMIHRDIKSANILLCSNGL  181 (496)
T ss_pred             ccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEeCCCC
Confidence                    368999999999999999753  234689999999999999999999999   9999999999999999999


Q ss_pred             EEEeccccceec-------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH
Q 048314          157 AKISDFGLAKLL-------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV  223 (274)
Q Consensus       157 ~kl~d~g~~~~~-------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~  223 (274)
                      +||+|||+++..             +++.|+|||++....++.++||||||+++|||++|+.||....   ..    ...
T Consensus       182 vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~---~~----~~~  254 (496)
T PTZ00283        182 VKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGEN---ME----EVM  254 (496)
T ss_pred             EEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC---HH----HHH
Confidence            999999997642             2567999999998889999999999999999999999996431   10    000


Q ss_pred             HHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          224 YKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .. ...+    ...  ..+...+..+.+++..||+.||.+|||+.++++.
T Consensus       255 ~~-~~~~----~~~--~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        255 HK-TLAG----RYD--PLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             HH-HhcC----CCC--CCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence            00 0111    011  2444566789999999999999999999999763

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=1.1e-37  Score=261.94  Aligned_cols=234  Identities=20%  Similarity=0.164  Sum_probs=186.9

Q ss_pred             hhccccccCCCCCCCCcchhHHHHH------HHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMRA------LMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~~------~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      ++|.....+|.|.+  |.||+|...      +++........+.+.+|++++++++||||+++++++.+....++++||+
T Consensus         3 ~~y~~~~~i~~g~~--~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~   80 (256)
T cd06612           3 EVFDILEKLGEGSY--GSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYC   80 (256)
T ss_pred             ccchhhhhhcCCCC--eEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecC
Confidence            56777888999999  999988321      1222222122456889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++++|.+++.. ....+++.....++.|++.|+.|||+.   +++|+|++|.||+++.++.++++|||++....      
T Consensus        81 ~~~~L~~~l~~-~~~~l~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~  156 (256)
T cd06612          81 GAGSVSDIMKI-TNKTLTEEEIAAILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKR  156 (256)
T ss_pred             CCCcHHHHHHh-CccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEECCCCcEEEcccccchhcccCcccc
Confidence            99999999975 346789999999999999999999999   99999999999999999999999999876432      


Q ss_pred             -----CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          170 -----DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       170 -----~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                           +..|++||.+.+..++.++|+||||+++|+|++|+.||...... ..  ..     ....    ........+..
T Consensus       157 ~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~-~~--~~-----~~~~----~~~~~~~~~~~  224 (256)
T cd06612         157 NTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPM-RA--IF-----MIPN----KPPPTLSDPEK  224 (256)
T ss_pred             ccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchh-hh--hh-----hhcc----CCCCCCCchhh
Confidence                 45699999998888899999999999999999999999643111 00  00     0000    00000122334


Q ss_pred             HHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          245 NLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .+..+.+++.+||+.||++|||+.||++.
T Consensus       225 ~~~~~~~~i~~~l~~~P~~Rps~~~il~~  253 (256)
T cd06612         225 WSPEFNDFVKKCLVKDPEERPSAIQLLQH  253 (256)
T ss_pred             cCHHHHHHHHHHHhcChhhCcCHHHHhcC
Confidence            55789999999999999999999999863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=7.9e-38  Score=277.62  Aligned_cols=242  Identities=17%  Similarity=0.194  Sum_probs=179.3

Q ss_pred             hccccccCCCCCCCCcchhHHH------HHHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC-----c
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM------RALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS-----K   87 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~   87 (274)
                      +|+..+.+|.|+|  |.||++.      ..++|....    ....+++.+|+.+++.++||||+++++++...+     .
T Consensus         1 ~~~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   78 (372)
T cd07853           1 DVEPDRPIGYGAF--GVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEE   78 (372)
T ss_pred             CCcccceeeeCCC--EEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccce
Confidence            4777889999999  9999882      112222211    122345779999999999999999999998766     7


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++|+||+. ++|.+++..  ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++..
T Consensus        79 ~~lv~e~~~-~~l~~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~  152 (372)
T cd07853          79 IYVVTELMQ-SDLHKIIVS--PQPLSSDHVKVFLYQILRGLKYLHSA---GILHRDIKPGNLLVNSNCVLKICDFGLARV  152 (372)
T ss_pred             EEEEeeccc-cCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHHEEECCCCCEEeccccceee
Confidence            899999986 588888864  45799999999999999999999999   999999999999999999999999999864


Q ss_pred             cC------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH-------HHH
Q 048314          168 LS------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY-------KCF  227 (274)
Q Consensus       168 ~~------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~-------~~~  227 (274)
                      ..            +..|+|||.+.+. .++.++||||+||++|||++|+.||...........+.....       ...
T Consensus       153 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~  232 (372)
T cd07853         153 EEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSA  232 (372)
T ss_pred             cccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHh
Confidence            32            4569999988764 478999999999999999999999964421110000000000       000


Q ss_pred             hhhhhhhhh----cCC------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 INRELNKLV----RGT------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 ~~~~~~~~~----~~~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .......+.    .+.      ......++++.+++.+||+.||++|||+.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  287 (372)
T cd07853         233 CEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALA  287 (372)
T ss_pred             hHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhc
Confidence            000000000    000      112233567899999999999999999999986

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=1.2e-37  Score=266.00  Aligned_cols=232  Identities=16%  Similarity=0.114  Sum_probs=180.6

Q ss_pred             ccccccCCCCCCCCcchhHHHHH------HHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMRA------LMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~~------~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      |.....+|.|++  |.||+|...      +++.....  ...+.+.+|+++++.++||||+++++.+...+..++|+||+
T Consensus         7 ~~i~~~lg~g~~--g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~   84 (282)
T cd06643           7 WEIIGELGDGAF--GKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   84 (282)
T ss_pred             HHHHhhcccCCC--eEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEec
Confidence            344567999999  999998211      11211111  22345778999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      ++++|..++.. ....+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||++...       
T Consensus        85 ~~~~l~~~~~~-~~~~l~~~~~~~~~~qi~~~L~~LH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~  160 (282)
T cd06643          85 AGGAVDAVMLE-LERPLTEPQIRVVCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRR  160 (282)
T ss_pred             CCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEccCCCEEEcccccccccccccccc
Confidence            99999998865 345799999999999999999999999   9999999999999999999999999987543       


Q ss_pred             ----CCCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ----SDKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ----~~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                          .+..|+|||++.     ...++.++|+|||||++|+|++|..||....   .......    . .......    .
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~---~~~~~~~----~-~~~~~~~----~  228 (282)
T cd06643         161 DSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELN---PMRVLLK----I-AKSEPPT----L  228 (282)
T ss_pred             ccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccC---HHHHHHH----H-hhcCCCC----C
Confidence                245799999874     3456789999999999999999999986431   1111111    0 0000000    1


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ..+...+..+.+++.+||+.||.+|||+.++++.
T Consensus       229 ~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  262 (282)
T cd06643         229 AQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQH  262 (282)
T ss_pred             CCccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            1233456789999999999999999999999863

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.3e-37  Score=258.59  Aligned_cols=227  Identities=19%  Similarity=0.204  Sum_probs=180.6

Q ss_pred             ccCCCCCCCCcchhHHHH-----HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCC
Q 048314           28 SLNDRNSPRSKSVWSCMR-----ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWD   99 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~-----~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs   99 (274)
                      +.+|.|++  |.||++..     .++|.....   ...+.+.+|++++++++|+||+++++++.+....++||||+.+++
T Consensus         1 ~~lg~g~~--g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   78 (251)
T cd05041           1 EKIGKGNF--GDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGS   78 (251)
T ss_pred             CccccCCC--ceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCc
Confidence            36899999  99998732     112222211   123467899999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----------
Q 048314          100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----------  169 (274)
Q Consensus       100 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----------  169 (274)
                      |.+++.. ....+++..+..++.+++.||.|||++   +++|+|++|+||+++.++.++++|||.+....          
T Consensus        79 l~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~  154 (251)
T cd05041          79 LLTFLRK-KKNRLTVKKLLQMSLDAAAGMEYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGL  154 (251)
T ss_pred             HHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CEehhhcCcceEEEcCCCcEEEeeccccccccCCcceecccc
Confidence            9999976 345689999999999999999999999   99999999999999999999999999886432          


Q ss_pred             ---CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHH
Q 048314          170 ---DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKN  245 (274)
Q Consensus       170 ---~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (274)
                         +..|+|||.+....++.++|+||||+++|+|++ |..||......    ....    .     .... .....+...
T Consensus       155 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~----~~~~----~-----~~~~-~~~~~~~~~  220 (251)
T cd05041         155 KQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQ----QTRE----R-----IESG-YRMPAPQLC  220 (251)
T ss_pred             CcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHH----HHHH----H-----HhcC-CCCCCCccC
Confidence               234999999988889999999999999999998 78888543110    0000    0     0000 011234455


Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          246 LENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       246 ~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +..+.+++.+||+.+|.+|||+.||++.|
T Consensus       221 ~~~~~~li~~~l~~~p~~Rp~~~ell~~l  249 (251)
T cd05041         221 PEEIYRLMLQCWAYDPENRPSFSEIYNEL  249 (251)
T ss_pred             CHHHHHHHHHHhccChhhCcCHHHHHHHh
Confidence            67899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-37  Score=252.37  Aligned_cols=233  Identities=21%  Similarity=0.226  Sum_probs=184.2

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-------HHHHHhc-----CCCCC----CcHHHHHHHHhcCC-CCccceEeEEEEe
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-------ALMATVN-----SPYSP----SRPLTLTSIVSRVS-WTTDIEVSSVAMR   84 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-------~~~~~~~-----~~~~~----~~~~~e~~~l~~l~-h~niv~l~~~~~~   84 (274)
                      +.|.+...+|+|..  +.|-.+..       +++++..     +.+..    +..++|+.+|+++. ||+|+++.+++.+
T Consensus        17 ~~y~pkeilgrgvs--s~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes   94 (411)
T KOG0599|consen   17 AKYEPKEILGRGVS--SVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYES   94 (411)
T ss_pred             hhcChHHHhcccch--hhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccC
Confidence            45666888999988  77777721       1111111     11111    22357999999987 9999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      +...++|+|.|+.|.|.|+|..  .-.++++....+++|+..|+.|||.+   +|+||||||+|||++++.+++|+|||+
T Consensus        95 ~sF~FlVFdl~prGELFDyLts--~VtlSEK~tR~iMrqlfegVeylHa~---~IVHRDLKpENILlddn~~i~isDFGF  169 (411)
T KOG0599|consen   95 DAFVFLVFDLMPRGELFDYLTS--KVTLSEKETRRIMRQLFEGVEYLHAR---NIVHRDLKPENILLDDNMNIKISDFGF  169 (411)
T ss_pred             cchhhhhhhhcccchHHHHhhh--heeecHHHHHHHHHHHHHHHHHHHHh---hhhhcccChhheeeccccceEEeccce
Confidence            9999999999999999999975  56799999999999999999999999   999999999999999999999999999


Q ss_pred             ceecC----------CCCcCCCccccc------CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh
Q 048314          165 AKLLS----------DKGCMAPECYKR------TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI  228 (274)
Q Consensus       165 ~~~~~----------~~~~~ape~~~~------~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~  228 (274)
                      +..+.          |++|+|||.+..      ..|+..+|+|++|+++|.++.|.+||..-    ...    .+...+.
T Consensus       170 a~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHR----kQm----lMLR~Im  241 (411)
T KOG0599|consen  170 ACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHR----KQM----LMLRMIM  241 (411)
T ss_pred             eeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHH----HHH----HHHHHHH
Confidence            97654          899999998853      35788999999999999999999999521    111    1112222


Q ss_pred             hhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          229 NRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+..   --..+...+.+...++||.+||+.||.+|.|++|++.
T Consensus       242 eGky---qF~speWadis~~~KdLIsrlLqVdp~~Ritake~La  282 (411)
T KOG0599|consen  242 EGKY---QFRSPEWADISATVKDLISRLLQVDPTKRITAKEALA  282 (411)
T ss_pred             hccc---ccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence            2221   1111344566778999999999999999999999875

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.2e-37  Score=265.56  Aligned_cols=245  Identities=20%  Similarity=0.224  Sum_probs=186.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH----------HHHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEe--CC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR----------ALMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMR--GS   86 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~   86 (274)
                      ++|...+.+|.|+|  |.||++..          .++|......   ..+.+.+|++++++++||||+++++++..  ..
T Consensus         4 ~~~~~~~~ig~g~~--~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~   81 (284)
T cd05038           4 RHLKFIKQLGEGHF--GKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGR   81 (284)
T ss_pred             hhchhheeeccCCC--eeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCC
Confidence            45666788999999  99998842          1122222221   24567899999999999999999999877  55


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..+++|||+++++|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+.
T Consensus        82 ~~~lv~e~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~  157 (284)
T cd05038          82 SLRLIMEYLPSGSLRDYLQR-HRDQINLKRLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAK  157 (284)
T ss_pred             ceEEEEecCCCCCHHHHHHh-CccccCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEccccccc
Confidence            78999999999999999986 334699999999999999999999999   99999999999999999999999999987


Q ss_pred             ecC--------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          167 LLS--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       167 ~~~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      ...              ...|++||.+....++.++|+||||+++++|++|..|+...............  ........
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~--~~~~~~~~  235 (284)
T cd05038         158 VLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQ--GQMIVTRL  235 (284)
T ss_pred             ccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhcccccccc--ccccHHHH
Confidence            644              22489999998888899999999999999999999998643111100000000  00000000


Q ss_pred             hhhhcC---CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          233 NKLVRG---TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       233 ~~~~~~---~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+..   ...+..++.++.+++.+||+.||++|||+.||+++|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l  280 (284)
T cd05038         236 LELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIV  280 (284)
T ss_pred             HHHHHcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHH
Confidence            011100   122345567899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-38  Score=282.81  Aligned_cols=227  Identities=18%  Similarity=0.178  Sum_probs=187.7

Q ss_pred             ccCCCCCCCCcchhHH------HHHHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCC
Q 048314           28 SLNDRNSPRSKSVWSC------MRALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWD   99 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~------~~~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs   99 (274)
                      -++|+|.+  |.||.|      .+.++|.+..+  ...+-...||..-++++|.|||+.+|.|.+++.+-+.||.++|||
T Consensus       581 vVLGKGTY--G~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGS  658 (1226)
T KOG4279|consen  581 VVLGKGTY--GTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGS  658 (1226)
T ss_pred             EEeecCce--eEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCc
Confidence            36999999  999999      22334444433  334556799999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCC--CHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CCCcEEEeccccceec--------
Q 048314          100 LAYIIFCSAERNP--YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKISDFGLAKLL--------  168 (274)
Q Consensus       100 L~~~l~~~~~~~l--~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-~~~~~kl~d~g~~~~~--------  168 (274)
                      |.+.|.. .=+++  ++.+.-.+..||++||.|||++   .|+|||||-+|+|+. -.|.+||+|||.++..        
T Consensus       659 LSsLLrs-kWGPlKDNEstm~fYtkQILeGLkYLHen---~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TE  734 (1226)
T KOG4279|consen  659 LSSLLRS-KWGPLKDNESTMNFYTKQILEGLKYLHEN---KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTE  734 (1226)
T ss_pred             HHHHHHh-ccCCCccchhHHHHHHHHHHHHhhhhhhc---ceeeccccCCcEEEeeccceEEecccccchhhccCCcccc
Confidence            9999986 45666  8999999999999999999999   999999999999996 4688999999998753        


Q ss_pred             ---CCCCcCCCcccccC--CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          169 ---SDKGCMAPECYKRT--PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       169 ---~~~~~~ape~~~~~--~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                         +|..|||||++-.+  .|+..+|||||||++.||.||++||...+.+.....-.         + +.+  .-.++|.
T Consensus       735 TFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkV---------G-myK--vHP~iPe  802 (1226)
T KOG4279|consen  735 TFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKV---------G-MYK--VHPPIPE  802 (1226)
T ss_pred             ccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhh---------c-cee--cCCCCcH
Confidence               25679999999776  48899999999999999999999997654433221100         0 111  1115888


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          244 KNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +.+++.+.+|.+|+.+||.+|||+.++++
T Consensus       803 elsaeak~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  803 ELSAEAKNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             HHHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence            99999999999999999999999999975

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.9e-37  Score=265.28  Aligned_cols=242  Identities=16%  Similarity=0.116  Sum_probs=176.5

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcC---CCCccceEeEEEEe-----C
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRV---SWTTDIEVSSVAMR-----G   85 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l---~h~niv~l~~~~~~-----~   85 (274)
                      |.....+|.|++  |.||++..      .++|.+...    .....+.+|+.+++++   +||||+++++++.+     .
T Consensus         2 y~~~~~lg~g~~--g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~   79 (288)
T cd07863           2 YEPVAEIGVGAY--GTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRE   79 (288)
T ss_pred             ceEeeEEeecCC--eEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCC
Confidence            556678999999  99999821      122222211    1223455777777665   69999999998864     2


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      ...+++|||++ ++|.+++.......+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++
T Consensus        80 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~kl~dfg~~  155 (288)
T cd07863          80 TKVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGQVKLADFGLA  155 (288)
T ss_pred             ceEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccCcc
Confidence            45799999997 5899999865555699999999999999999999999   9999999999999999999999999998


Q ss_pred             eecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh-
Q 048314          166 KLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK-  234 (274)
Q Consensus       166 ~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  234 (274)
                      ....          +..|+|||++.+..++.++||||+||++|+|++|.+||................. ......... 
T Consensus       156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~  234 (288)
T cd07863         156 RIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIG-LPPEDDWPRD  234 (288)
T ss_pred             ccccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhC-CCChhhCccc
Confidence            6532          4569999999888899999999999999999999999864321111111110000 000000000 


Q ss_pred             ------hhcCC------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          235 ------LVRGT------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       235 ------~~~~~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                            ...+.      ......+..+.+++.+||+.||++|||+.|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         235 VTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             ccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence                  00000      011234567899999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=1.7e-37  Score=264.85  Aligned_cols=234  Identities=18%  Similarity=0.199  Sum_probs=180.0

Q ss_pred             hccccccCCCCCCCCcchhHHH------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      +|....++|.|++  |.||+|.      ..++|.....   ...+.+.+|++++++++||||+++++.+...+..++|||
T Consensus         2 ~~~~~~~lg~g~~--~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   79 (279)
T cd06619           2 DIQYQEILGHGNG--GTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTE   79 (279)
T ss_pred             cchheeeeccCCC--eEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEe
Confidence            5666788999999  9999982      1112222111   122457799999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++++|..+.      .+++.....++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++....    
T Consensus        80 ~~~~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~  150 (279)
T cd06619          80 FMDGGSLDVYR------KIPEHVLGRIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIA  150 (279)
T ss_pred             cCCCCChHHhh------cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCCHHHEEECCCCCEEEeeCCcceecccccc
Confidence            99999997552      478999999999999999999999   99999999999999999999999999986432    


Q ss_pred             -----CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          170 -----DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       170 -----~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                           +..|+|||.+....++.++|+||||+++|+|++|..||............... .....+.     ..+......
T Consensus       151 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~  224 (279)
T cd06619         151 KTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQL-LQCIVDE-----DPPVLPVGQ  224 (279)
T ss_pred             cCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHH-HHHHhcc-----CCCCCCCCc
Confidence                 56799999998888999999999999999999999999643211110000000 0000000     011111223


Q ss_pred             HHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          245 NLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .+.++.+++.+||+.||++||+++|+++.
T Consensus       225 ~~~~~~~li~~~l~~~P~~Rp~~~eil~~  253 (279)
T cd06619         225 FSEKFVHFITQCMRKQPKERPAPENLMDH  253 (279)
T ss_pred             CCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            45678999999999999999999999763

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.7e-38  Score=263.83  Aligned_cols=242  Identities=18%  Similarity=0.144  Sum_probs=181.6

Q ss_pred             hhhccccccCCCCCCCCcchhHH-------HHHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC-----cc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS-----KP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~~   88 (274)
                      +-.|...+++|.|.|  |.||+|       .+|+||...   +.+---+|+.+|+++.|||||+|.-+|....     ..
T Consensus        23 ~i~~~~~~liG~GsF--g~Vyq~~~~e~~~~vAIKKv~~---d~r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~l   97 (364)
T KOG0658|consen   23 EISYEAVRLIGSGSF--GVVYQAKLRETEEEVAIKKVLQ---DKRYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYL   97 (364)
T ss_pred             EEEEEeeEEEeeccc--ceEEEEEEcCCCceeEEEEecC---CCCcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHH
Confidence            345677899999999  999999       223333322   2332238999999999999999998886422     45


Q ss_pred             eEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcEEEeccccc
Q 048314           89 STEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKISDFGLA  165 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~d~g~~  165 (274)
                      .+|||||+. +|.+++...  .+..++...++-+.-|+..||+|||+.   +|+||||||.|+|++.+ +.+||+|||.+
T Consensus        98 nlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~---~IcHRDIKPqNlLvD~~tg~LKicDFGSA  173 (364)
T KOG0658|consen   98 NLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSH---GICHRDIKPQNLLVDPDTGVLKICDFGSA  173 (364)
T ss_pred             HHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhc---CcccCCCChheEEEcCCCCeEEeccCCcc
Confidence            799999985 999999853  346688888899999999999999998   99999999999999865 89999999999


Q ss_pred             eecC----------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          166 KLLS----------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       166 ~~~~----------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      +...          +..|+|||.+.+. .|+.+.||||.||++.||+-|++.|....+...-......+ .....+.+..
T Consensus       174 K~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~l-G~Pt~e~I~~  252 (364)
T KOG0658|consen  174 KVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVL-GTPTREDIKS  252 (364)
T ss_pred             eeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHh-CCCCHHHHhh
Confidence            8765          4569999998875 69999999999999999999999997642222111111111 0001111110


Q ss_pred             -----------hhcCC---c-cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          235 -----------LVRGT---E-VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       235 -----------~~~~~---~-~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                                 -+.+.   . .....+++..+++.++|..+|.+|.|+.|++.
T Consensus       253 mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~  305 (364)
T KOG0658|consen  253 MNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALA  305 (364)
T ss_pred             cCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhc
Confidence                       01111   1 33455678999999999999999999999875

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=1e-37  Score=272.07  Aligned_cols=219  Identities=17%  Similarity=0.133  Sum_probs=171.4

Q ss_pred             ccCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHH-HHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTS-IVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.+|.|+|  |.||++..      .++|..     ........+..|.. +++.++||||+++++++.+.+..++||||+
T Consensus         1 ~~lG~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~   78 (325)
T cd05604           1 KVIGKGSF--GKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFV   78 (325)
T ss_pred             CceeeCCC--eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCC
Confidence            36899999  99998721      111111     11122234455555 467799999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      ++|+|.+++..  ...+++.....++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...       
T Consensus        79 ~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH~~---givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~  153 (325)
T cd05604          79 NGGELFFHLQR--ERSFPEPRARFYAAEIASALGYLHSI---NIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTT  153 (325)
T ss_pred             CCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCc
Confidence            99999999875  45799999999999999999999999   9999999999999999999999999987642       


Q ss_pred             ----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          169 ----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       169 ----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                          ++..|+|||++....++.++|||||||++|+|++|..||.....   .. +.    ......       ....+..
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~---~~-~~----~~~~~~-------~~~~~~~  218 (325)
T cd05604         154 TTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDV---AE-MY----DNILHK-------PLVLRPG  218 (325)
T ss_pred             ccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCH---HH-HH----HHHHcC-------CccCCCC
Confidence                25679999999988899999999999999999999999964311   00 00    000010       0112223


Q ss_pred             HHHHHHHHHHHhhccCCCCCCChh
Q 048314          245 NLENLVKVGLWCVQDEPALRPSMK  268 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~~  268 (274)
                      .+..+.+++.+||+.||.+||++.
T Consensus       219 ~~~~~~~ll~~ll~~~p~~R~~~~  242 (325)
T cd05604         219 ASLTAWSILEELLEKDRQRRLGAK  242 (325)
T ss_pred             CCHHHHHHHHHHhccCHHhcCCCC
Confidence            556788999999999999999885

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.5e-37  Score=264.40  Aligned_cols=240  Identities=19%  Similarity=0.158  Sum_probs=186.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|...+.+|+|++  |.||++..      .++|....   ....+.+.+|+++++.++||||+++++.+...+.+++|
T Consensus         4 ~~~~~~~~~ig~g~~--g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (284)
T cd06620           4 NEDLETISDLGAGNG--GSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMC   81 (284)
T ss_pred             HHHHHHHHHcCCCCC--eEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEE
Confidence            356777888999999  99998721      12222111   12235677999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      |||+++++|.+++..  .+.+++.....++.+++.||.|||+ .   +++|+|++|+||+++.++.++++|||++...  
T Consensus        82 ~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~~---~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~  156 (284)
T cd06620          82 MEFMDCGSLDRIYKK--GGPIPVEILGKIAVAVVEGLTYLYNVH---RIMHRDIKPSNILVNSRGQIKLCDFGVSGELIN  156 (284)
T ss_pred             EecCCCCCHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHhc---CeeccCCCHHHEEECCCCcEEEccCCcccchhh
Confidence            999999999999875  4568999999999999999999996 5   8999999999999999999999999987542  


Q ss_pred             -------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChh----hHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 -------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPE----EIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 -------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                             ++..|+|||.+....++.++|+|||||++|++++|..||........    ...+..+...... ..     .
T Consensus       157 ~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~  230 (284)
T cd06620         157 SIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQ-EP-----P  230 (284)
T ss_pred             hccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhh-cc-----C
Confidence                   35679999999888889999999999999999999999975422211    1111111111100 00     0


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      +.......+..+.+++.+||+.||++|||+.|++++
T Consensus       231 ~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~  266 (284)
T cd06620         231 PRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAM  266 (284)
T ss_pred             CCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            111112355779999999999999999999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1.7e-37  Score=269.39  Aligned_cols=177  Identities=20%  Similarity=0.214  Sum_probs=144.2

Q ss_pred             cccCCCCCCCCcchhHHHH--------HHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEe--CCcceEEEEeCC
Q 048314           27 SSLNDRNSPRSKSVWSCMR--------ALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--GSKPSTEAALDL   96 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~--------~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~e~~~   96 (274)
                      ...+|+|+|  |.||+|..        .++|..........+.+|+.++++++||||+++++++.+  +...+++|||+.
T Consensus         6 ~~~lG~G~~--g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07868           6 GCKVGRGTY--GHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE   83 (317)
T ss_pred             ccccccCCC--eEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence            467999999  99999831        112222222233457799999999999999999999864  456789999986


Q ss_pred             CCCHHHHHHhC-------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE----cCCCcEEEeccccc
Q 048314           97 PWDLAYIIFCS-------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKISDFGLA  165 (274)
Q Consensus        97 ~gsL~~~l~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~----~~~~~~kl~d~g~~  165 (274)
                       ++|.+++...       ....+++..++.++.|++.||.|||+.   +++||||||+||++    +.++.+||+|||++
T Consensus        84 -~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a  159 (317)
T cd07868          84 -HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFA  159 (317)
T ss_pred             -CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEecCCCCcCcEEEeecCce
Confidence             5888887632       123589999999999999999999999   99999999999999    45678999999998


Q ss_pred             eecC--------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccc
Q 048314          166 KLLS--------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEI  209 (274)
Q Consensus       166 ~~~~--------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~  209 (274)
                      ....              ++.|+|||++.+. .++.++|+||+||++|+|++|+.||..
T Consensus       160 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~  218 (317)
T cd07868         160 RLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             eccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccC
Confidence            6432              5569999988764 578999999999999999999999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=2.7e-37  Score=272.90  Aligned_cols=244  Identities=18%  Similarity=0.144  Sum_probs=179.7

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH------HHHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC---
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM------RALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS---   86 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~---   86 (274)
                      ..++|.....||.|+|  |.||++.      ..++|.+.    .......+.+|+.+++.++||||+++++++....   
T Consensus        19 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~   96 (359)
T cd07876          19 VLKRYQQLKPIGSGAQ--GIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLE   96 (359)
T ss_pred             hhhceEEEEEeecCCC--EEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcc
Confidence            4578888999999999  9999982      12222221    1123455678999999999999999999986433   


Q ss_pred             ---cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccc
Q 048314           87 ---KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG  163 (274)
Q Consensus        87 ---~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g  163 (274)
                         ..++||||+.+ +|.+.+..    .+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||
T Consensus        97 ~~~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~---~ivHrDlkp~NIl~~~~~~~kl~Dfg  168 (359)
T cd07876          97 EFQDVYLVMELMDA-NLCQVIHM----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFG  168 (359)
T ss_pred             ccceeEEEEeCCCc-CHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEecCC
Confidence               47999999975 67776643    488999999999999999999999   99999999999999999999999999


Q ss_pred             cceec----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHH-----------HHH
Q 048314          164 LAKLL----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL-----------TNW  222 (274)
Q Consensus       164 ~~~~~----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~-----------~~~  222 (274)
                      ++...          ++..|+|||.+.+..++.++||||||+++|+|++|..||............           ...
T Consensus       169 ~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (359)
T cd07876         169 LARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNR  248 (359)
T ss_pred             CccccccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHH
Confidence            98643          256799999999888999999999999999999999999744211100000           000


Q ss_pred             HHHHH----hhhh------hh----hhhcCC--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          223 VYKCF----INRE------LN----KLVRGT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       223 ~~~~~----~~~~------~~----~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .....    ....      ..    .+..+.  ..+......+.+++.+||+.||++|||++|+++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  315 (359)
T cd07876         249 LQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRH  315 (359)
T ss_pred             HHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcC
Confidence            00000    0000      00    000000  1112234678999999999999999999999863

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=2.7e-37  Score=274.06  Aligned_cols=241  Identities=14%  Similarity=0.060  Sum_probs=184.5

Q ss_pred             hhhHHHHhhhccccccCCCCCCCCcchhHHHH------HHHH-----HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEE
Q 048314           14 RSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMA-----TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVA   82 (274)
Q Consensus        14 ~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~-----~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~   82 (274)
                      ..++....++|...+.+|+|+|  |.||++..      .++|     ........+.+.+|+.+++.++||||+++++.+
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~f--g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~  112 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAF--GEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAF  112 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCC--eEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            4456666789999999999999  99998811      1111     111112234467899999999999999999999


Q ss_pred             EeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           83 MRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        83 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                      .+++..++||||+++|+|.+++..   ..++...+..++.|++.||.|||+.   +++||||||+||+++.++.+||+||
T Consensus       113 ~~~~~~~lv~Ey~~gg~L~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NIll~~~~~ikL~Df  186 (371)
T cd05622         113 QDDRYLYMVMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADF  186 (371)
T ss_pred             EcCCEEEEEEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEECCCCCEEEEeC
Confidence            999999999999999999999975   3589999999999999999999999   9999999999999999999999999


Q ss_pred             ccceec------------CCCCcCCCcccccC----CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH
Q 048314          163 GLAKLL------------SDKGCMAPECYKRT----PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC  226 (274)
Q Consensus       163 g~~~~~------------~~~~~~ape~~~~~----~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~  226 (274)
                      |++...            +++.|+|||++...    .++.++|+|||||++|||++|..||.....   .....    ..
T Consensus       187 G~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~---~~~~~----~i  259 (371)
T cd05622         187 GTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL---VGTYS----KI  259 (371)
T ss_pred             CceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCH---HHHHH----HH
Confidence            998643            36679999998653    378899999999999999999999964311   10000    00


Q ss_pred             HhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCC--CCChhhHHhh
Q 048314          227 FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL--RPSMKCVVMM  273 (274)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~evl~~  273 (274)
                      ........    .+.+...+..+.+++..||..++.+  ||+++|+++.
T Consensus       260 ~~~~~~~~----~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h  304 (371)
T cd05622         260 MNHKNSLT----FPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH  304 (371)
T ss_pred             HcCCCccc----CCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcC
Confidence            00000000    0112245678899999999844443  7899998764

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.9e-37  Score=266.91  Aligned_cols=232  Identities=16%  Similarity=0.151  Sum_probs=184.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcC--CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS--PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ..+|...+.+|.|++  |.||+|..      .+++....  ....+.+.+|+.+++++.|+||+++++.+......++||
T Consensus        19 ~~~y~~~~~lg~g~~--~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~   96 (296)
T cd06654          19 KKKYTRFEKIGQGAS--GTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (296)
T ss_pred             ccceeeEEEecCCCC--eEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEee
Confidence            356777888999999  99999831      11122221  123355778999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      ||+++++|.+++.+   ..+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+...    
T Consensus        97 e~~~~~~L~~~~~~---~~~~~~~~~~i~~ql~~aL~~LH~~---gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~  170 (296)
T cd06654          97 EYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ  170 (296)
T ss_pred             cccCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEECccccchhccccc
Confidence            99999999999964   4589999999999999999999999   9999999999999999999999999987532    


Q ss_pred             -------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          169 -------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       169 -------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +++.|+|||.+....++.++|+||||+++|+|++|..||.....  .. ...    ......     ......
T Consensus       171 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~--~~-~~~----~~~~~~-----~~~~~~  238 (296)
T cd06654         171 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP--LR-ALY----LIATNG-----TPELQN  238 (296)
T ss_pred             cccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCH--HH-hHH----HHhcCC-----CCCCCC
Confidence                   24579999999888889999999999999999999999964311  00 000    000000     001112


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +...+..+.+++.+||..||++|||+.++++
T Consensus       239 ~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~  269 (296)
T cd06654         239 PEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (296)
T ss_pred             ccccCHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence            3345577899999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=4.1e-37  Score=262.72  Aligned_cols=244  Identities=18%  Similarity=0.181  Sum_probs=180.1

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|...+.+|.|++  |.||+|..      .++|.....    ...+.+.+|+.++++++||||+++++++.+++..++||
T Consensus         1 ~y~~~~~l~~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (285)
T cd07861           1 DYTKIEKIGEGTY--GVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIF   78 (285)
T ss_pred             CceEeeEecccCc--eEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEE
Confidence            3566778999999  99999821      112221111    12345678999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           93 ALDLPWDLAYIIFCSAE-RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      ||++ ++|.+++..... ..+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++....  
T Consensus        79 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  154 (285)
T cd07861          79 EFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIP  154 (285)
T ss_pred             ecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEEcCCCcEEECcccceeecCCC
Confidence            9997 689999875332 5689999999999999999999999   99999999999999999999999999886432  


Q ss_pred             ---------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH-------HHHHhh-hh
Q 048314          170 ---------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV-------YKCFIN-RE  231 (274)
Q Consensus       170 ---------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~-------~~~~~~-~~  231 (274)
                               +..|+|||.+... .++.++|+||||+++++|++|+.||................       +..... ..
T Consensus       155 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (285)
T cd07861         155 VRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPD  234 (285)
T ss_pred             cccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHH
Confidence                     4579999987654 56889999999999999999999996432111110000000       000000 00


Q ss_pred             hhhhhcC----C--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          232 LNKLVRG----T--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       232 ~~~~~~~----~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .......    .  ......+.++.+++.+||+.||++|||+.+|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         235 YKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             HHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence            0000000    0  011224567889999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.5e-37  Score=270.71  Aligned_cols=233  Identities=19%  Similarity=0.205  Sum_probs=182.7

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHH------HHHHHHHhc---CCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCc
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSC------MRALMATVN---SPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSK   87 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~---~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~   87 (274)
                      ....+.|.....||.||.  +.||++      ..++++...   +....+.|.+|+..|.+|+ |.+||+|++|-..++.
T Consensus       357 ~Vkg~~Yeilk~iG~GGS--SkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~  434 (677)
T KOG0596|consen  357 KVKGREYEILKQIGSGGS--SKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGY  434 (677)
T ss_pred             EECcchhhHHHhhcCCCc--ceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCce
Confidence            344556777888999999  999998      344444322   2245667899999999998 9999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      +|||||| ...+|..+|.........| .++.+..|++.|+.++|++   ||||.||||.|+|+- .|.+||+|||++..
T Consensus       435 lYmvmE~-Gd~DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~IH~~---gIVHSDLKPANFLlV-kG~LKLIDFGIA~a  508 (677)
T KOG0596|consen  435 LYMVMEC-GDIDLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTIHQH---GIVHSDLKPANFLLV-KGRLKLIDFGIANA  508 (677)
T ss_pred             EEEEeec-ccccHHHHHHhccCCCchH-HHHHHHHHHHHHHHHHHHh---ceeecCCCcccEEEE-eeeEEeeeechhcc
Confidence            9999995 6789999998743333345 8899999999999999999   999999999999984 46899999999975


Q ss_pred             cC-------------CCCcCCCcccccC-----------CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH
Q 048314          168 LS-------------DKGCMAPECYKRT-----------PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV  223 (274)
Q Consensus       168 ~~-------------~~~~~ape~~~~~-----------~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~  223 (274)
                      +.             |..||+||.+...           ..+.++||||+||+||+|+.|+.||...         .+  
T Consensus       509 I~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~---------~n--  577 (677)
T KOG0596|consen  509 IQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQI---------IN--  577 (677)
T ss_pred             cCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHH---------HH--
Confidence            43             7889999987432           2467899999999999999999999632         00  


Q ss_pred             HHHHhhhhhhhhhcCC---ccCHHHHH-HHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          224 YKCFINRELNKLVRGT---EVDKKNLE-NLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       224 ~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                          .-..+..+.++.   ++|.-... ++.+++..||.+||.+|||+.|||+.
T Consensus       578 ----~~aKl~aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLqh  627 (677)
T KOG0596|consen  578 ----QIAKLHAITDPNHEIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQH  627 (677)
T ss_pred             ----HHHHHHhhcCCCccccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhcC
Confidence                011233444442   33332222 29999999999999999999999863

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2e-37  Score=265.00  Aligned_cols=240  Identities=16%  Similarity=0.218  Sum_probs=181.6

Q ss_pred             hhccccccCCCCCCCCcchhHHH----------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeC--C
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM----------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--S   86 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~----------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~   86 (274)
                      +.|...+.+|+|+|  |.||.+.          ..++|.....   ...+.+.+|+.++++++||||+++++++.+.  .
T Consensus         4 ~~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (284)
T cd05079           4 RFLKRIRDLGEGHF--GKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGN   81 (284)
T ss_pred             hhhhhceecCCCCc--eeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCC
Confidence            45677788999999  9998652          1112222211   2234577899999999999999999998775  5


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++||||+++++|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++.
T Consensus        82 ~~~lv~e~~~g~~L~~~l~~-~~~~~~~~~~~~i~~~i~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~~l~dfg~~~  157 (284)
T cd05079          82 GIKLIMEFLPSGSLKEYLPR-NKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTK  157 (284)
T ss_pred             ceEEEEEccCCCCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccchheEEEcCCCCEEECCCcccc
Confidence            68999999999999999975 334689999999999999999999999   99999999999999999999999999886


Q ss_pred             ecC--------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCCh--------hhHHHHHHHH
Q 048314          167 LLS--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKP--------EEIILTNWVY  224 (274)
Q Consensus       167 ~~~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~--------~~~~~~~~~~  224 (274)
                      ...              +..|+|||.+....++.++|+||||+++|+++++..|........        ......... 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  236 (284)
T cd05079         158 AIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLV-  236 (284)
T ss_pred             ccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHH-
Confidence            432              235899999888888999999999999999999876653210000        000000000 


Q ss_pred             HHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          225 KCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ......      .....+...+..+.+++.+||+.||++|||+.++++.|
T Consensus       237 ~~~~~~------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l  280 (284)
T cd05079         237 RVLEEG------KRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGF  280 (284)
T ss_pred             HHHHcC------ccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHH
Confidence            000000      00122344667899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=1e-37  Score=282.32  Aligned_cols=245  Identities=16%  Similarity=0.128  Sum_probs=177.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeC--------
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--------   85 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--------   85 (274)
                      ..++|...+.+|.|+|  |.||+|..      .++|.+.  .......+|+.+|++++|||||++++++...        
T Consensus        64 ~~~~y~~~~~LG~G~f--g~Vy~~~~~~~~~~vAiK~i~--~~~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~  139 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSF--GVVYEAICIDTSEKVAIKKVL--QDPQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKN  139 (440)
T ss_pred             cCCeEEEeEEEEeCCC--EEEEEEEECCCCCEEEEEEEe--cCcchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCc
Confidence            3457888999999999  99999822      1122111  1233455899999999999999999886432        


Q ss_pred             CcceEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEecc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKISDF  162 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~d~  162 (274)
                      ...++||||+++ +|.+++...  ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.+. .+||+||
T Consensus       140 ~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~---~IiHrDLKp~NILl~~~~~~vkL~DF  215 (440)
T PTZ00036        140 IFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSK---FICHRDLKPQNLLIDPNTHTLKLCDF  215 (440)
T ss_pred             eEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCcCHHHEEEcCCCCceeeecc
Confidence            246799999984 787777532  345699999999999999999999999   999999999999998654 6999999


Q ss_pred             ccceec----------CCCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH----HHH
Q 048314          163 GLAKLL----------SDKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY----KCF  227 (274)
Q Consensus       163 g~~~~~----------~~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~----~~~  227 (274)
                      |+++..          +++.|+|||++.+. .++.++|||||||++|||++|.+||.................    ...
T Consensus       216 Gla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~  295 (440)
T PTZ00036        216 GSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQL  295 (440)
T ss_pred             ccchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHH
Confidence            998643          25679999988654 689999999999999999999999964421111111100000    000


Q ss_pred             --hhhhhhhhhcCC--------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 --INRELNKLVRGT--------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 --~~~~~~~~~~~~--------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                        .+.....+..+.        .++...+.++.+|+.+||+.||.+|||+.|+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~  350 (440)
T PTZ00036        296 KEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALA  350 (440)
T ss_pred             HHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhC
Confidence              000000000000        123344578999999999999999999999975

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=2e-37  Score=270.21  Aligned_cols=219  Identities=18%  Similarity=0.151  Sum_probs=171.4

Q ss_pred             cCCCCCCCCcchhHHHH------HHHHHhc-----CCCCCCcHHHHHH-HHhcCCCCccceEeEEEEeCCcceEEEEeCC
Q 048314           29 LNDRNSPRSKSVWSCMR------ALMATVN-----SPYSPSRPLTLTS-IVSRVSWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~------~~~~~~~-----~~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      .+|.|+|  |.||++..      .++|.+.     .......+..|.. +++.++||||+++++++.+.+..++||||++
T Consensus         2 ~lg~G~f--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~   79 (325)
T cd05602           2 VIGKGSF--GKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYIN   79 (325)
T ss_pred             eeeeCCC--eEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCC
Confidence            6899999  99998811      1111111     1112223444444 5678999999999999999999999999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------  168 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--------  168 (274)
                      +|+|.+++..  ...+++.....++.|++.||.|||+.   +++||||||+||+++.++.++|+|||+++..        
T Consensus        80 ~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~---giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~  154 (325)
T cd05602          80 GGELFYHLQR--ERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTS  154 (325)
T ss_pred             CCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcc
Confidence            9999999975  45688899999999999999999999   9999999999999999999999999987632        


Q ss_pred             ---CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHH
Q 048314          169 ---SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKN  245 (274)
Q Consensus       169 ---~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (274)
                         +++.|+|||++....++.++||||+||++|+|++|..||....   ... ...    .....       +...+...
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~---~~~-~~~----~i~~~-------~~~~~~~~  219 (325)
T cd05602         155 TFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN---TAE-MYD----NILNK-------PLQLKPNI  219 (325)
T ss_pred             cccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCC---HHH-HHH----HHHhC-------CcCCCCCC
Confidence               3678999999998889999999999999999999999996431   111 100    00010       11233345


Q ss_pred             HHHHHHHHHHhhccCCCCCCChhh
Q 048314          246 LENLVKVGLWCVQDEPALRPSMKC  269 (274)
Q Consensus       246 ~~~~~~li~~cl~~dp~~Rps~~e  269 (274)
                      +..+.+++.+||+.||.+||++.+
T Consensus       220 ~~~~~~li~~~l~~~p~~R~~~~~  243 (325)
T cd05602         220 TNSARHLLEGLLQKDRTKRLGAKD  243 (325)
T ss_pred             CHHHHHHHHHHcccCHHHCCCCCC
Confidence            678899999999999999999874

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=1.5e-37  Score=265.19  Aligned_cols=243  Identities=15%  Similarity=0.124  Sum_probs=188.6

Q ss_pred             hhhhhHHHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcC-CCCCCcHHHHHHHHhcC-CCCccceEeEEEE
Q 048314           12 IARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS-PYSPSRPLTLTSIVSRV-SWTTDIEVSSVAM   83 (274)
Q Consensus        12 ~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~   83 (274)
                      .+..++....+.|.....+|.|+|  |.||++..      .++|.... ......+..|+.+++++ +|+||+++++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~--~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~   83 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTY--GQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFI   83 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCC--eEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehh
Confidence            356666677889999999999999  99998722      11222221 12334567899999998 6999999999985


Q ss_pred             e------CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcE
Q 048314           84 R------GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA  157 (274)
Q Consensus        84 ~------~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~  157 (274)
                      .      ....+++|||+++|+|.+++.......+++..+..++.|++.|+.|||+.   +++|+|++|+||+++.++.+
T Consensus        84 ~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dl~~~nili~~~~~~  160 (282)
T cd06636          84 KKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAH---KVIHRDIKGQNVLLTENAEV  160 (282)
T ss_pred             cccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCE
Confidence            3      45689999999999999999875556689999999999999999999999   99999999999999999999


Q ss_pred             EEeccccceec-----------CCCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHH
Q 048314          158 KISDFGLAKLL-----------SDKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN  221 (274)
Q Consensus       158 kl~d~g~~~~~-----------~~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~  221 (274)
                      +|+|||++...           ++..|+|||.+.     ...++.++|+||||+++|+|++|..||.... +....  . 
T Consensus       161 ~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~-~~~~~--~-  236 (282)
T cd06636         161 KLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMH-PMRAL--F-  236 (282)
T ss_pred             EEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccC-HHhhh--h-
Confidence            99999987532           245699999875     3457789999999999999999999996431 11100  0 


Q ss_pred             HHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          222 WVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                               .......+.......+..+.+++.+||+.||.+|||+.|+++
T Consensus       237 ---------~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         237 ---------LIPRNPPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             ---------hHhhCCCCCCcccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence                     000101111122245678999999999999999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=1.6e-37  Score=266.43  Aligned_cols=246  Identities=15%  Similarity=0.095  Sum_probs=189.7

Q ss_pred             hhhhhhhHHHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-CCCCcHHHHHHHHhcC-CCCccceEeEE
Q 048314           10 AWIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-YSPSRPLTLTSIVSRV-SWTTDIEVSSV   81 (274)
Q Consensus        10 ~~~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~l~~~   81 (274)
                      +.++..++....++|.....+|.|++  |.||++..      .++|..... ...+.+.+|+.++.++ +|||+++++++
T Consensus        10 ~~~~~~~~~~~~~~y~~~~~l~~g~~--~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~   87 (291)
T cd06639          10 SMLGLESLGDPTDTWEIIETIGKGTY--GKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGM   87 (291)
T ss_pred             hhhhcccCCCCCCCeEEEEEeecCCC--eEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEE
Confidence            35677888888999999999999999  99998722      112222211 1234566899999998 79999999999


Q ss_pred             EEeC-----CcceEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC
Q 048314           82 AMRG-----SKPSTEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  154 (274)
Q Consensus        82 ~~~~-----~~~~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  154 (274)
                      +...     +..++||||+++++|.+++...  ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.+
T Consensus        88 ~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~nili~~~  164 (291)
T cd06639          88 FYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTE  164 (291)
T ss_pred             EEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCC
Confidence            8753     3589999999999999998642  235689999999999999999999999   99999999999999999


Q ss_pred             CcEEEeccccceecC-----------CCCcCCCcccccC-----CCccccceeehhHhHHHHhhcCCCccccCCChhhHH
Q 048314          155 WTAKISDFGLAKLLS-----------DKGCMAPECYKRT-----PISVKADVYGYGIVLLETICCWENMEIDASKPEEII  218 (274)
Q Consensus       155 ~~~kl~d~g~~~~~~-----------~~~~~ape~~~~~-----~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~  218 (274)
                      +.++++|||++....           +..|+|||.+...     .++.++|+||||+++|+|++|+.||.....   ...
T Consensus       165 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~---~~~  241 (291)
T cd06639         165 GGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHP---VKT  241 (291)
T ss_pred             CCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcH---HHH
Confidence            999999999876432           4569999987643     257899999999999999999999964311   111


Q ss_pred             HHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          219 LTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +...     ........    ..+......+.+++.+||+.||++|||+.|+++
T Consensus       242 ~~~~-----~~~~~~~~----~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~  286 (291)
T cd06639         242 LFKI-----PRNPPPTL----LHPEKWCRSFNHFISQCLIKDFEARPSVTHLLE  286 (291)
T ss_pred             HHHH-----hcCCCCCC----CcccccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            1100     00101111    123344567999999999999999999999986

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=1.4e-37  Score=277.89  Aligned_cols=182  Identities=18%  Similarity=0.177  Sum_probs=156.9

Q ss_pred             hccccccCCCCCCCCcchhHH------HHHHHHHhcCC-CCCCcHHHHHHHHhcCC-C-----CccceEeEEEEeCCcce
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC------MRALMATVNSP-YSPSRPLTLTSIVSRVS-W-----TTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~~-~~~~~~~~e~~~l~~l~-h-----~niv~l~~~~~~~~~~~   89 (274)
                      .|....+||+|.|  |.|.+|      ..+++|++++. .-..+...|+++|..++ |     -|+|+++++|...++.|
T Consensus       187 rY~V~e~LGkGtF--GQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlc  264 (586)
T KOG0667|consen  187 RYEVLEVLGKGSF--GQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLC  264 (586)
T ss_pred             EEEEEEEeccccc--ceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccccee
Confidence            4566889999999  999999      22334444433 33444568999999997 4     46999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC--CCcEEEecccccee
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE--FWTAKISDFGLAKL  167 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~--~~~~kl~d~g~~~~  167 (274)
                      ||+|.+. -||+++++.++..+++.+.++.++.||+.||.+||+.   +|||+||||+|||+.+  ...+|++|||.+..
T Consensus       265 iVfELL~-~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l---~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~  340 (586)
T KOG0667|consen  265 IVFELLS-TNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHEL---GIIHCDLKPENILLKDPKRSRIKVIDFGSSCF  340 (586)
T ss_pred             eeehhhh-hhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCChhheeeccCCcCceeEEecccccc
Confidence            9999875 6999999999999999999999999999999999999   9999999999999964  34789999999976


Q ss_pred             cC--------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCcccc
Q 048314          168 LS--------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEID  210 (274)
Q Consensus       168 ~~--------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~  210 (274)
                      ..        +..|+|||++.+.+|+.+.|||||||++.||.+|.+.|...
T Consensus       341 ~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~  391 (586)
T KOG0667|consen  341 ESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD  391 (586)
T ss_pred             cCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCC
Confidence            55        56799999999999999999999999999999998888654

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=4e-37  Score=258.86  Aligned_cols=231  Identities=20%  Similarity=0.214  Sum_probs=184.5

Q ss_pred             ccccccCCCCCCCCcchhHH------HHHHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSC------MRALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      |...+.+|.|+|  |.+|.+      ...+++...    .....+++.+|+.++++++||||+++++++.+.+..++|+|
T Consensus         2 y~~~~~lg~g~~--g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08218           2 YVKVKKIGEGSF--GKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMD   79 (256)
T ss_pred             ceEEEEeccCCc--eEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEe
Confidence            566788999999  888876      111112111    11223467899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++++|.+++.......+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.++++|||.+....    
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~  156 (256)
T cd08218          80 YCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVE  156 (256)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEEeeccceeecCcchh
Confidence            99999999999764445689999999999999999999999   99999999999999999999999999886542    


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                             +..|+|||.+.....+.++|+||||++++++++|..||.....   .    ...... ..+..      ...+
T Consensus       157 ~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~---~----~~~~~~-~~~~~------~~~~  222 (256)
T cd08218         157 LARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNM---K----NLVLKI-IRGSY------PPVS  222 (256)
T ss_pred             hhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCH---H----HHHHHH-hcCCC------CCCc
Confidence                   4569999999888889999999999999999999999864311   0    000010 01100      1234


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ...+.++.+++.+||+.+|++||++.+|++.
T Consensus       223 ~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~  253 (256)
T cd08218         223 SHYSYDLRNLVSQLFKRNPRDRPSVNSILEK  253 (256)
T ss_pred             ccCCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence            4556789999999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=2.7e-37  Score=264.10  Aligned_cols=245  Identities=15%  Similarity=0.094  Sum_probs=188.3

Q ss_pred             hhhhhHHHHhhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC-CCCCcHHHHHHHHhcC-CCCccceEeEEEE
Q 048314           12 IARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP-YSPSRPLTLTSIVSRV-SWTTDIEVSSVAM   83 (274)
Q Consensus        12 ~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~l~~~~~   83 (274)
                      +.++.+....++|.....+|.|++  |.||++.      ..++|..... ...+.+.+|+.+++++ +||||+++++++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~--~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   85 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTY--GKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYY   85 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCC--cEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeee
Confidence            456777888999999999999999  9999871      1222222221 2234567899999999 6999999999884


Q ss_pred             -----eCCcceEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 048314           84 -----RGSKPSTEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT  156 (274)
Q Consensus        84 -----~~~~~~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~  156 (274)
                           +++.+++||||+++++|.+++...  ....+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~  162 (286)
T cd06638          86 KKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN---KTIHRDVKGNNILLTTEGG  162 (286)
T ss_pred             ecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC---CccccCCCHHhEEECCCCC
Confidence                 345689999999999999988642  235689999999999999999999999   9999999999999999999


Q ss_pred             EEEeccccceecC-----------CCCcCCCccccc-----CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHH
Q 048314          157 AKISDFGLAKLLS-----------DKGCMAPECYKR-----TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT  220 (274)
Q Consensus       157 ~kl~d~g~~~~~~-----------~~~~~ape~~~~-----~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~  220 (274)
                      ++++|||++....           +..|+|||.+..     ..++.++|+||+|+++|+|++|..||..... ..  .+.
T Consensus       163 ~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~-~~--~~~  239 (286)
T cd06638         163 VKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHP-MR--ALF  239 (286)
T ss_pred             EEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCch-hH--HHh
Confidence            9999999986432           456999998753     3478899999999999999999999864311 00  000


Q ss_pred             HHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          221 NWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                          . .........    ..+...+..+.+++.+||+.||++|||+.||++.
T Consensus       240 ----~-~~~~~~~~~----~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         240 ----K-IPRNPPPTL----HQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             ----h-ccccCCCcc----cCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence                0 000000000    1222345679999999999999999999999875

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-38  Score=280.43  Aligned_cols=225  Identities=19%  Similarity=0.159  Sum_probs=187.6

Q ss_pred             HHhhhccccccCCCCCCCCcchhHH----------HHHHHH-HhcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCC
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSC----------MRALMA-TVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGS   86 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~----------~~~~~~-~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~   86 (274)
                      ...++|.-.+++|+|+|  |+|+.+          .++.+| .+-...+.+..+.|-+|+.-.. ||.+++++..|.+..
T Consensus       365 ~~l~~F~~l~vLGkGsF--GkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~  442 (694)
T KOG0694|consen  365 LTLDDFRLLAVLGRGSF--GKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKE  442 (694)
T ss_pred             ccccceEEEEEeccCcC--ceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCC
Confidence            34578888999999999  999988          334444 2333356677788999888776 999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      +.|.||||+.||++..++   ..+.+++.....++..++.||.|||++   +||+||||.+|||++.+|++||+|||+++
T Consensus       443 ~l~fvmey~~Ggdm~~~~---~~~~F~e~rarfyaAev~l~L~fLH~~---~IIYRDlKLdNiLLD~eGh~kiADFGlcK  516 (694)
T KOG0694|consen  443 HLFFVMEYVAGGDLMHHI---HTDVFSEPRARFYAAEVVLGLQFLHEN---GIIYRDLKLDNLLLDTEGHVKIADFGLCK  516 (694)
T ss_pred             eEEEEEEecCCCcEEEEE---ecccccHHHHHHHHHHHHHHHHHHHhc---CceeeecchhheEEcccCcEEeccccccc
Confidence            999999999999944333   346799999999999999999999999   99999999999999999999999999997


Q ss_pred             ec-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          167 LL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       167 ~~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      ..           +|+.|+|||++....|+..+|.|||||++|||+.|..||..++.   +. +.            ..+
T Consensus       517 e~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddE---ee-~F------------dsI  580 (694)
T KOG0694|consen  517 EGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDE---EE-VF------------DSI  580 (694)
T ss_pred             ccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCH---HH-HH------------HHH
Confidence            43           37899999999999999999999999999999999999975421   11 11            111


Q ss_pred             h-cCCccCHHHHHHHHHHHHHhhccCCCCCCCh
Q 048314          236 V-RGTEVDKKNLENLVKVGLWCVQDEPALRPSM  267 (274)
Q Consensus       236 ~-~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  267 (274)
                      + |...+|.-.+.+..++++++|..||++|--+
T Consensus       581 ~~d~~~yP~~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  581 VNDEVRYPRFLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             hcCCCCCCCcccHHHHHHHHHHhccCcccccCC
Confidence            1 2224677888899999999999999999755

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-38  Score=261.50  Aligned_cols=234  Identities=19%  Similarity=0.136  Sum_probs=195.4

Q ss_pred             hhccccccCCCCCCCCcchhHH------HHHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC------MRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      ..|.....+|+|++  |.|||+      .+.++|.+....+.++.+.|+.+|+++..|++|++||.++.+..+++|||||
T Consensus        33 EVFDi~~KLGEGSY--GSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYC  110 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSY--GSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYC  110 (502)
T ss_pred             HHHHHHHHhcCCcc--hHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhc
Confidence            45666778999999  999999      2333444444456778889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee--------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------  167 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~--------  167 (274)
                      .-||+.|.+.. +..+|++.++..++.+.+.||.|||..   .-+|||||..|||+..+|..||+|||++..        
T Consensus       111 GAGSiSDI~R~-R~K~L~E~EIs~iL~~TLKGL~YLH~~---~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKR  186 (502)
T KOG0574|consen  111 GAGSISDIMRA-RRKPLSEQEISAVLRDTLKGLQYLHDL---KKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKR  186 (502)
T ss_pred             CCCcHHHHHHH-hcCCccHHHHHHHHHHHHhHHHHHHHH---HHHHhhcccccEEEcccchhhhhhccccchhhhhHHhh
Confidence            99999999987 567899999999999999999999998   899999999999999999999999999854        


Q ss_pred             ---cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          168 ---LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       168 ---~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                         ++++.|||||++..-.|..++||||+|++..||..|++||... .+-..+.        ........-+   .-|..
T Consensus       187 NTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDI-HPMRAIF--------MIPT~PPPTF---~KPE~  254 (502)
T KOG0574|consen  187 NTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDI-HPMRAIF--------MIPTKPPPTF---KKPEE  254 (502)
T ss_pred             CccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccc-cccceeE--------eccCCCCCCC---CChHh
Confidence               4489999999999989999999999999999999999999633 1100000        0000000001   35778


Q ss_pred             HHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          245 NLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ++.++.++++.||.++|++|.|+-++++.
T Consensus       255 WS~~F~DFi~~CLiK~PE~R~TA~~L~~H  283 (502)
T KOG0574|consen  255 WSSEFNDFIRSCLIKKPEERKTALRLCEH  283 (502)
T ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence            89999999999999999999999998863

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=4.4e-37  Score=263.85  Aligned_cols=233  Identities=18%  Similarity=0.136  Sum_probs=181.5

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      +.|...+.+|.|++  |.||+|..      .+++.....  ...+.+.+|+.++++++||||+++++.+..++..++|||
T Consensus        12 ~~y~i~~~lg~g~~--g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   89 (292)
T cd06644          12 EVWEIIGELGDGAF--GKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIE   89 (292)
T ss_pred             hhhhhhheecCCCC--eEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEe
Confidence            45666788999999  99998821      111211111  223457789999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-----  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-----  168 (274)
                      |+++++|..++.+ ....+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.++|+|||.+...     
T Consensus        90 ~~~~~~l~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~  165 (292)
T cd06644          90 FCPGGAVDAIMLE-LDRGLTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQ  165 (292)
T ss_pred             cCCCCcHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHhcC---CeeecCCCcceEEEcCCCCEEEccCccceecccccc
Confidence            9999999998865 345699999999999999999999999   9999999999999999999999999987542     


Q ss_pred             ------CCCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 ------SDKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 ------~~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                            .+..|+|||.+.     ...++.++|+||||+++|+|++|..||.....  .. ....     .......    
T Consensus       166 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~--~~-~~~~-----~~~~~~~----  233 (292)
T cd06644         166 RRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP--MR-VLLK-----IAKSEPP----  233 (292)
T ss_pred             ccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccH--HH-HHHH-----HhcCCCc----
Confidence                  245799999885     34467899999999999999999999864311  00 0000     0000000    


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....+...+.++.+++.+||+.||++||++.++++
T Consensus       234 ~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         234 TLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             cCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            00123345567899999999999999999999976

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=3.5e-37  Score=268.47  Aligned_cols=223  Identities=18%  Similarity=0.163  Sum_probs=177.0

Q ss_pred             hccccccCCCCCCCCcchhHHH------HHHHHHh-----cCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM------RALMATV-----NSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~-----~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~l   90 (274)
                      +|...+.+|.|+|  |.||++.      ..++|..     ......+.+..|..++..+. |++|+++++++.+.+..++
T Consensus         1 ~f~~~~~lg~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~l   78 (323)
T cd05615           1 DFNFLMVLGKGSF--GKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYF   78 (323)
T ss_pred             CceEEEEEEecCC--eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEE
Confidence            4667789999999  9999871      1111211     11123345678899998886 5778889999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      ||||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...  
T Consensus        79 v~Ey~~~g~L~~~i~~--~~~l~~~~~~~i~~qi~~al~~lH~~---~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~  153 (323)
T cd05615          79 VMEYVNGGDLMYHIQQ--VGKFKEPQAVFYAAEISVGLFFLHRR---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMV  153 (323)
T ss_pred             EEcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeccccccccCC
Confidence            9999999999999975  45699999999999999999999999   9999999999999999999999999987642  


Q ss_pred             ---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               ++..|+|||++....++.++|+||+|+++|+|++|..||....   .. .+..    .....       ..
T Consensus       154 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~---~~-~~~~----~i~~~-------~~  218 (323)
T cd05615         154 DGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGED---ED-ELFQ----SIMEH-------NV  218 (323)
T ss_pred             CCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCC---HH-HHHH----HHHhC-------CC
Confidence                     3667999999988889999999999999999999999996431   11 1111    00010       11


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCCh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSM  267 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~  267 (274)
                      ..+...+..+.+++.+||+.||.+|++.
T Consensus       219 ~~p~~~~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         219 SYPKSLSKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             CCCccCCHHHHHHHHHHcccCHhhCCCC
Confidence            2344456788999999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-37  Score=263.61  Aligned_cols=229  Identities=21%  Similarity=0.228  Sum_probs=196.2

Q ss_pred             HhhhccccccCCCCCCCCcchhHH-------HHHH----HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSC-------MRAL----MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~-------~~~~----~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      ..+.|..-+++|+|+|  |.||.|       +.+.    ||.++.+......++|-.+|++++.+.||.+--.+.+.+.+
T Consensus       183 t~n~F~~~RvlGkGGF--GEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~L  260 (591)
T KOG0986|consen  183 TKNTFRVYRVLGKGGF--GEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDAL  260 (591)
T ss_pred             cccceeeeEEEecccc--cceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCce
Confidence            3478999999999999  888877       3333    55566656667778999999999999999998889999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      |+|+..|.||+|.-+|.+..+..+++...+.++.+|+-||.+||..   +|++||+||+|||+|++|+++|+|+|++..+
T Consensus       261 ClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~---~iVYRDLKPeNILLDd~GhvRISDLGLAvei  337 (591)
T KOG0986|consen  261 CLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRR---RIVYRDLKPENILLDDHGHVRISDLGLAVEI  337 (591)
T ss_pred             EEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhc---ceeeccCChhheeeccCCCeEeeccceEEec
Confidence            9999999999999999987777899999999999999999999999   9999999999999999999999999999654


Q ss_pred             ----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh--
Q 048314          169 ----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV--  236 (274)
Q Consensus       169 ----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  236 (274)
                                +|.+|||||++..+.|+...|.||+||++|||+.|+.||......             ...+.+...+  
T Consensus       338 ~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeK-------------vk~eEvdrr~~~  404 (591)
T KOG0986|consen  338 PEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEK-------------VKREEVDRRTLE  404 (591)
T ss_pred             CCCCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhh-------------hhHHHHHHHHhc
Confidence                      388999999999999999999999999999999999999754221             1222222222  


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCC
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPS  266 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps  266 (274)
                      ++.+.+...+++.+++.+..|++||++|--
T Consensus       405 ~~~ey~~kFS~eakslc~~LL~Kdp~~RLG  434 (591)
T KOG0986|consen  405 DPEEYSDKFSEEAKSLCEGLLTKDPEKRLG  434 (591)
T ss_pred             chhhcccccCHHHHHHHHHHHccCHHHhcc
Confidence            233677888899999999999999999863

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=3.1e-37  Score=270.96  Aligned_cols=236  Identities=17%  Similarity=0.191  Sum_probs=181.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRG   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~   85 (274)
                      .++|...+.||.|+|  |.||+|.           ..++|.+...   ...+.+.+|+.++.++ +||||++++++|...
T Consensus         6 ~~~~~~~~~lG~G~f--g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~   83 (343)
T cd05103           6 RDRLKLGKPLGRGAF--GQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKP   83 (343)
T ss_pred             hhHhcccccccCCcc--ceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecC
Confidence            356788899999999  9999873           1122322221   1123467899999999 689999999988654


Q ss_pred             -CcceEEEEeCCCCCHHHHHHhCC--------------------------------------------------------
Q 048314           86 -SKPSTEAALDLPWDLAYIIFCSA--------------------------------------------------------  108 (274)
Q Consensus        86 -~~~~lv~e~~~~gsL~~~l~~~~--------------------------------------------------------  108 (274)
                       ...+++||||++|+|.+++....                                                        
T Consensus        84 ~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (343)
T cd05103          84 GGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEE  163 (343)
T ss_pred             CCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchh
Confidence             45789999999999999997531                                                        


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----------
Q 048314          109 ---------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----------  169 (274)
Q Consensus       109 ---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----------  169 (274)
                               ...+++..+..++.|++.||.|||+.   +++||||||.||+++.++.++++|||++....          
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  240 (343)
T cd05103         164 EEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGD  240 (343)
T ss_pred             hhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCC
Confidence                     12368888999999999999999999   99999999999999999999999999886431          


Q ss_pred             ---CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHH
Q 048314          170 ---DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKN  245 (274)
Q Consensus       170 ---~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (274)
                         +..|+|||.+....++.++|+||||+++|+|++ |..||........   ..    ....++..      ...+...
T Consensus       241 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~---~~----~~~~~~~~------~~~~~~~  307 (343)
T cd05103         241 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE---FC----RRLKEGTR------MRAPDYT  307 (343)
T ss_pred             CCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHH---HH----HHHhccCC------CCCCCCC
Confidence               245999999988889999999999999999997 8888864311110   00    11111100      0122234


Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          246 LENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       246 ~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +..+.+++..||+.||++|||+.||++.|
T Consensus       308 ~~~~~~~~~~cl~~~p~~Rps~~eil~~l  336 (343)
T cd05103         308 TPEMYQTMLDCWHGEPSQRPTFSELVEHL  336 (343)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            46789999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=1.1e-37  Score=275.44  Aligned_cols=231  Identities=16%  Similarity=0.134  Sum_probs=178.6

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|...+.+|.|+|  |.||++..      .++|.+     ......+.+.+|+.++.+++||||+++++.+.+.+..++|
T Consensus         2 ~f~~~~~lG~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv   79 (360)
T cd05627           2 DFESLKVIGRGAF--GEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLI   79 (360)
T ss_pred             CceEEEEEeeCCC--EEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEE
Confidence            5777889999999  99998711      111211     1222344567899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee----
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL----  167 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~----  167 (274)
                      |||+++|+|.+++..  .+.+++.....++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++..    
T Consensus        80 ~E~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~~L~~lH~~---givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~  154 (360)
T cd05627          80 MEFLPGGDMMTLLMK--KDTLSEEATQFYIAETVLAIDAIHQL---GFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKA  154 (360)
T ss_pred             EeCCCCccHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEeeccCCcccccc
Confidence            999999999999975  45789999999999999999999999   999999999999999999999999998642    


Q ss_pred             ------------------------------------------cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCC
Q 048314          168 ------------------------------------------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWE  205 (274)
Q Consensus       168 ------------------------------------------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~  205 (274)
                                                                .+++.|+|||++....++.++|+|||||++|||++|..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~  234 (360)
T cd05627         155 HRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYP  234 (360)
T ss_pred             cccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCC
Confidence                                                      24667999999998889999999999999999999999


Q ss_pred             CccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCC---hhhHHh
Q 048314          206 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPS---MKCVVM  272 (274)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps---~~evl~  272 (274)
                      ||.......   ...    . ..+.. .....+  .....+..+.+++.+|+ .||.+|++   +.|+++
T Consensus       235 Pf~~~~~~~---~~~----~-i~~~~-~~~~~p--~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~  292 (360)
T cd05627         235 PFCSETPQE---TYR----K-VMNWK-ETLVFP--PEVPISEKAKDLILRFC-TDSENRIGSNGVEEIKS  292 (360)
T ss_pred             CCCCCCHHH---HHH----H-HHcCC-CceecC--CCCCCCHHHHHHHHHhc-cChhhcCCCCCHHHHhc
Confidence            996431110   000    0 00000 000001  11123567888888877 49999985   566654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-37  Score=278.97  Aligned_cols=222  Identities=20%  Similarity=0.195  Sum_probs=187.2

Q ss_pred             ccCCCCCCCCcchhHH---------HHHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSC---------MRALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~---------~~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      .++|.|.|  |.|+.|         +-+++|-+++.   ...++|++|+.+|.+|+|||+|+|||+..+ ....||+|++
T Consensus       116 e~LG~GsF--gvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~ELa  192 (1039)
T KOG0199|consen  116 ELLGEGSF--GVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFELA  192 (1039)
T ss_pred             HHhcCcce--eeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhhc
Confidence            45999999  999999         22223333322   256789999999999999999999999998 5578999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      +.|||.+.|.......|....+.+++.||+.|+.||.++   ++|||||-.+|+++.....+||+|||+.+-++      
T Consensus       193 plGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLesk---rlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Y  269 (1039)
T KOG0199|consen  193 PLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESK---RLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMY  269 (1039)
T ss_pred             ccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhheecccceeeeecccceeccCCCCcce
Confidence            999999999875556799999999999999999999999   99999999999999999999999999998765      


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-  239 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  239 (274)
                              -..|.|||.+....++.++|+|+|||++|||++ |..||-...                 ...+.+.+|.. 
T Consensus       270 vm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~-----------------g~qIL~~iD~~e  332 (1039)
T KOG0199|consen  270 VMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCR-----------------GIQILKNIDAGE  332 (1039)
T ss_pred             EecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCC-----------------HHHHHHhccccc
Confidence                    235899999999999999999999999999997 678885431                 11122223322 


Q ss_pred             --ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 --EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 --~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                        +.|..|++++.+++..||..+|++|||+..|.+
T Consensus       333 rLpRPk~csedIY~imk~cWah~paDRptFsair~  367 (1039)
T KOG0199|consen  333 RLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIRE  367 (1039)
T ss_pred             cCCCCCCChHHHHHHHHHhccCCccccccHHHHHH
Confidence              478899999999999999999999999998864

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=6.4e-37  Score=258.99  Aligned_cols=230  Identities=14%  Similarity=0.147  Sum_probs=182.1

Q ss_pred             ccccccCCCCCCCCcchhHHHH-----HHHHHhcCC-C-------CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSP-Y-------SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~-~-------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      |...+.+|.|+|  |.||+|..     .++|.+... .       ....+.+|+.++++++|+||+++++++.+.+..++
T Consensus         2 ~~~~~~ig~g~~--~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l   79 (265)
T cd06631           2 WTKGEVLGKGAY--GTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISI   79 (265)
T ss_pred             ccccceEeccCC--eEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEE
Confidence            455678999999  99998732     122222211 0       11346789999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      ++||+++++|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+...  
T Consensus        80 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  154 (265)
T cd06631          80 FMEFVPGGSISSILNR--FGPLPEPVFCKYTKQILDGVAYLHNN---CVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAW  154 (265)
T ss_pred             EEecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHhEEECCCCeEEeccchhhHhhhh
Confidence            9999999999999975  35689999999999999999999999   9999999999999999999999999987542  


Q ss_pred             ---------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          169 ---------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       169 ---------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                                     ++..|+|||.+....++.++|+||||++++++++|..||.....   .....       ......
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~---~~~~~-------~~~~~~  224 (265)
T cd06631         155 VGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDR---LAAMF-------YIGAHR  224 (265)
T ss_pred             ccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCCh---HHHHH-------Hhhhcc
Confidence                           24569999999888889999999999999999999999964311   00000       000000


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...  ...+...+..+.+++.+||+.+|++|||+.++++
T Consensus       225 ~~~--~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         225 GLM--PRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             CCC--CCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            000  1234456678899999999999999999999985

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=8.8e-37  Score=256.75  Aligned_cols=231  Identities=20%  Similarity=0.244  Sum_probs=182.1

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEe-CCcceEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR-GSKPSTEA   92 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~   92 (274)
                      |...+.+|.|++  |.||.+..      .++|.+..    ....+.+.+|++++++++|+|++++++.+.. .+..+++|
T Consensus         2 y~~~~~lg~g~~--~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~   79 (257)
T cd08223           2 YCFVRVVGKGSY--GEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVM   79 (257)
T ss_pred             ceEEEEecCCCC--eEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEe
Confidence            555678999999  99997721      11222211    1223456789999999999999999998764 44679999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++++|.+++.......+++.+++.++.|++.|+.+||+.   +++|+||+|+||+++.++.++|+|||++....   
T Consensus        80 e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~---~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~  156 (257)
T cd08223          80 GFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQC  156 (257)
T ss_pred             cccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCchhEEEecCCcEEEecccceEEecccC
Confidence            999999999999875556699999999999999999999999   99999999999999999999999999886432   


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                              ++.|+|||.+....++.++|+||||++++++++|+.||....   ..    ..... ...+..      ...
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~---~~----~~~~~-~~~~~~------~~~  222 (257)
T cd08223         157 DMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKD---MN----SLVYR-IIEGKL------PPM  222 (257)
T ss_pred             CccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC---HH----HHHHH-HHhcCC------CCC
Confidence                    457999999988888999999999999999999999986331   11    00001 011111      013


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      +...+..+.+++.+||+.||++|||+.++++.
T Consensus       223 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         223 PKDYSPELGELIATMLSKRPEKRPSVKSILRQ  254 (257)
T ss_pred             ccccCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            34556789999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=5.7e-37  Score=271.30  Aligned_cols=245  Identities=18%  Similarity=0.133  Sum_probs=180.4

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeC---
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG---   85 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~---   85 (274)
                      ...++|...+.+|.|+|  |.||++..      .++|.+..    ......+.+|+.+++.++||||+++++++...   
T Consensus        21 ~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~   98 (364)
T cd07875          21 TVLKRYQNLKPIGSGAQ--GIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSL   98 (364)
T ss_pred             chhcceeEEEEeecCCC--eEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccc
Confidence            34578999999999999  99998821      11222221    12234567899999999999999999987543   


Q ss_pred             ---CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           86 ---SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        86 ---~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                         ...++||||+++ +|.+++..    .+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+||
T Consensus        99 ~~~~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Df  170 (364)
T cd07875          99 EEFQDVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDF  170 (364)
T ss_pred             cccCeEEEEEeCCCC-CHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEECCCCcEEEEeC
Confidence               357999999974 78887753    488999999999999999999999   9999999999999999999999999


Q ss_pred             ccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHH-----------
Q 048314          163 GLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN-----------  221 (274)
Q Consensus       163 g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~-----------  221 (274)
                      |+++...          +..|+|||.+.+..++.++|||||||++|+|++|+.||..............           
T Consensus       171 G~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  250 (364)
T cd07875         171 GLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMK  250 (364)
T ss_pred             CCccccCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence            9986432          5679999999988899999999999999999999999964321110000000           


Q ss_pred             ----HHHHHHhhhh------hhhhhcCC------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          222 ----WVYKCFINRE------LNKLVRGT------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       222 ----~~~~~~~~~~------~~~~~~~~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                          .......+..      ........      ..+......+.+++.+||+.||.+|||+.|+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~h  318 (364)
T cd07875         251 KLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  318 (364)
T ss_pred             hhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                0000000000      00000000      1111234578999999999999999999999863

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-37  Score=263.53  Aligned_cols=231  Identities=19%  Similarity=0.210  Sum_probs=179.7

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHH----------HHHH-HHHhcCC-----------CCCCcHHHHHHHHhcCCCCcc
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSC----------MRAL-MATVNSP-----------YSPSRPLTLTSIVSRVSWTTD   75 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~----------~~~~-~~~~~~~-----------~~~~~~~~e~~~l~~l~h~ni   75 (274)
                      .+..|.|....-+|.|.+  |.|-.+          ++++ ++.....           ...++..+||.+|++++||||
T Consensus        93 ~k~lNqy~l~~eiG~G~y--GkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nV  170 (576)
T KOG0585|consen   93 RKQLNQYELIKEIGSGQY--GKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNV  170 (576)
T ss_pred             ceehhheehhhhhcCCcc--ceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCe
Confidence            445577888889999999  888777          2222 2211111           112356789999999999999


Q ss_pred             ceEeEEEEe--CCcceEEEEeCCCCCHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc
Q 048314           76 IEVSSVAMR--GSKPSTEAALDLPWDLAYIIFCSAERN-PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD  152 (274)
Q Consensus        76 v~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~-l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~  152 (274)
                      |+|+.+-.+  .+..|||+|||..|.+...-   .... +++.+.++++++++.||.|||.+   +|+||||||+|+|++
T Consensus       171 V~LiEvLDDP~s~~~YlVley~s~G~v~w~p---~d~~els~~~Ar~ylrDvv~GLEYLH~Q---giiHRDIKPsNLLl~  244 (576)
T KOG0585|consen  171 VKLIEVLDDPESDKLYLVLEYCSKGEVKWCP---PDKPELSEQQARKYLRDVVLGLEYLHYQ---GIIHRDIKPSNLLLS  244 (576)
T ss_pred             eEEEEeecCcccCceEEEEEeccCCccccCC---CCcccccHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEEc
Confidence            999999866  46789999999998876543   2344 99999999999999999999999   999999999999999


Q ss_pred             CCCcEEEeccccceec----------------CCCCcCCCcccccCC----CccccceeehhHhHHHHhhcCCCccccCC
Q 048314          153 EFWTAKISDFGLAKLL----------------SDKGCMAPECYKRTP----ISVKADVYGYGIVLLETICCWENMEIDAS  212 (274)
Q Consensus       153 ~~~~~kl~d~g~~~~~----------------~~~~~~ape~~~~~~----~~~~~Di~s~G~~l~el~~g~~p~~~~~~  212 (274)
                      .++++||+|||.+...                +|+.++|||++..+.    .+.+.||||+||+||-++.|+.||...  
T Consensus       245 ~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~--  322 (576)
T KOG0585|consen  245 SDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDD--  322 (576)
T ss_pred             CCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccc--
Confidence            9999999999998754                388999999987732    357899999999999999999999643  


Q ss_pred             ChhhHHHHHHHHHHHhhhhhhhhhcCC-ccCH--HHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          213 KPEEIILTNWVYKCFINRELNKLVRGT-EVDK--KNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                        ...       ..     ..+++... .+|.  +..+.+.+||.++|.+||++|.++.+|..
T Consensus       323 --~~~-------~l-----~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~  371 (576)
T KOG0585|consen  323 --FEL-------EL-----FDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKL  371 (576)
T ss_pred             --hHH-------HH-----HHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhhee
Confidence              111       11     11111111 2222  45788999999999999999999998754

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.8e-37  Score=257.04  Aligned_cols=235  Identities=17%  Similarity=0.114  Sum_probs=185.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcC--CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS--PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ++|.....+|.|++  |.||++..      .+++....  ....+.+.+|+.++++++||||+++++.+.+.+..+++||
T Consensus         3 ~~~~~~~~l~~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e   80 (262)
T cd06613           3 EDYELIQRIGSGTY--GDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVME   80 (262)
T ss_pred             cceEEEEEecCCCc--eEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEe
Confidence            46777788999999  99999832      11222211  1234567899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++++|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+....    
T Consensus        81 ~~~~~~l~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  156 (262)
T cd06613          81 YCGGGSLQDIYQV-TRGPLSELQIAYVCRETLKGLAYLHET---GKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA  156 (262)
T ss_pred             CCCCCcHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHhC---CceecCCChhhEEECCCCCEEECccccchhhhhhhh
Confidence            9999999999976 335799999999999999999999999   99999999999999999999999999875432    


Q ss_pred             -------CCCcCCCcccccC---CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 -------DKGCMAPECYKRT---PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 -------~~~~~ape~~~~~---~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                             +..|++||.+...   .++.++|+||||+++|+|++|..||.... +...  ...     .........  ..
T Consensus       157 ~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~-~~~~--~~~-----~~~~~~~~~--~~  226 (262)
T cd06613         157 KRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH-PMRA--LFL-----ISKSNFPPP--KL  226 (262)
T ss_pred             ccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC-HHHH--HHH-----HHhccCCCc--cc
Confidence                   4469999998766   78899999999999999999999996431 1110  000     000000000  00


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+...+.++.+++.+||..||.+|||+.+|++
T Consensus       227 ~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         227 KDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             cchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            123345678999999999999999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=5e-37  Score=264.72  Aligned_cols=241  Identities=15%  Similarity=0.174  Sum_probs=182.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|...+.+|.|++  |.||+|..      .++|.+.   .......+.+|+.++++++||||+++++++.+.+..++|
T Consensus         5 ~~~y~~~~~lg~g~~--g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv   82 (301)
T cd07873           5 LETYIKLDKLGEGTY--ATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLV   82 (301)
T ss_pred             ccceEEeeEeccCcC--EEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEE
Confidence            356777888999999  99999821      1122222   112234567999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |||++ ++|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++++|||++....  
T Consensus        83 ~e~~~-~~l~~~l~~-~~~~~~~~~~~~~~~qi~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  157 (301)
T cd07873          83 FEYLD-KDLKQYLDD-CGNSINMHNVKLFLFQLLRGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSIP  157 (301)
T ss_pred             Eeccc-cCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHHHEEECCCCcEEECcCcchhccCCC
Confidence            99997 599999876 345689999999999999999999999   99999999999999999999999999886432  


Q ss_pred             ---------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH---hhhhhhhhh
Q 048314          170 ---------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF---INRELNKLV  236 (274)
Q Consensus       170 ---------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  236 (274)
                               +..|+|||.+... .++.++||||||+++|+|++|+.||....... .   ........   .........
T Consensus       158 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~  233 (301)
T cd07873         158 TKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEE-Q---LHFIFRILGTPTEETWPGIL  233 (301)
T ss_pred             CCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHH-H---HHHHHHHcCCCChhhchhhh
Confidence                     4569999987653 57889999999999999999999997442111 1   00000000   000000000


Q ss_pred             c---------CC-------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 R---------GT-------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 ~---------~~-------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .         +.       ......+..+.+++.+||+.||.+|||++|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         234 SNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             ccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            0         00       011123557899999999999999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=7.2e-37  Score=256.99  Aligned_cols=231  Identities=20%  Similarity=0.240  Sum_probs=183.2

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|...+.+|.|++  |.||++..      .++|.....    ...+.+.+|+.++++++|||++++++.+...+..++||
T Consensus         1 ~y~~~~~lg~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   78 (256)
T cd08220           1 KYEKIRVVGRGAF--GIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVM   78 (256)
T ss_pred             CceEEEEecccCc--eEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEE
Confidence            3566788999999  99998721      112222211    22345778999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcEEEeccccceecC--
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKISDFGLAKLLS--  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~d~g~~~~~~--  169 (274)
                      ||+++++|.+++.......+++..+..++.+++.|+.|||++   +++|+|++|+||+++.+ ..++++|||.+....  
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~  155 (256)
T cd08220          79 EYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLDKHKMVVKIGDFGISKILSSK  155 (256)
T ss_pred             ecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccCCCceecCCC
Confidence            999999999999874455689999999999999999999999   99999999999999754 468999999987543  


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                              +..|+|||.+....++.++|+||||+++++|++|..||.......    ...   .. ....      ....
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~----~~~---~~-~~~~------~~~~  221 (256)
T cd08220         156 SKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPA----LVL---KI-MSGT------FAPI  221 (256)
T ss_pred             ccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHH----HHH---HH-HhcC------CCCC
Confidence                    457999999988888999999999999999999999996432111    000   00 0000      0123


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +...+..+.+++.+||+.||++|||+.|+++
T Consensus       222 ~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         222 SDRYSPDLRQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             CCCcCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence            3345678999999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=6.5e-37  Score=256.84  Aligned_cols=242  Identities=19%  Similarity=0.177  Sum_probs=183.0

Q ss_pred             hhccccccCCCCCCCCcchhHH-------HHHHHHHhcCCC---CCCcHHHHHHHHhcCCCCc-cceEeEEEEeCC----
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSPY---SPSRPLTLTSIVSRVSWTT-DIEVSSVAMRGS----   86 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~~---~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~----   86 (274)
                      ..|.....+|+|.+  |.||+|       .++.|+.-...+   .+....+|+.+|++++|+| ||++++++.+.+    
T Consensus        11 ~~~~~~eklGeGty--g~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~   88 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTY--GVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRG   88 (323)
T ss_pred             HHHHHHHHhCCCCc--eEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccc
Confidence            34555556999999  999999       233333222211   3455689999999999999 999999998876    


Q ss_pred             --cceEEEEeCCCCCHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           87 --KPSTEAALDLPWDLAYIIFCSAE--RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        87 --~~~lv~e~~~~gsL~~~l~~~~~--~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                        ..++|+||+. -+|..++.....  ..++...++.+..|++.||+|||++   +|+||||||.|++++.++.+||+||
T Consensus        89 ~~~l~lvfe~~d-~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHRDLKPQNlLi~~~G~lKlaDF  164 (323)
T KOG0594|consen   89 IGKLYLVFEFLD-RDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH---GILHRDLKPQNLLISSSGVLKLADF  164 (323)
T ss_pred             cceEEEEEEeec-ccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCcceEEECCCCcEeeecc
Confidence              7899999986 599999997543  4688899999999999999999999   9999999999999999999999999


Q ss_pred             ccceecC-----------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh
Q 048314          163 GLAKLLS-----------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR  230 (274)
Q Consensus       163 g~~~~~~-----------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      |+++...           |..|.|||.+.+. .|+...||||+||++.||++++..|.....    ......+.......
T Consensus       165 GlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se----~~ql~~If~~lGtP  240 (323)
T KOG0594|consen  165 GLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSE----IDQLFRIFRLLGTP  240 (323)
T ss_pred             chHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcH----HHHHHHHHHHcCCC
Confidence            9997544           3459999999876 689999999999999999999999875422    11111111111110


Q ss_pred             h---h-------------hhhhcCCccCHHH---HHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          231 E---L-------------NKLVRGTEVDKKN---LENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       231 ~---~-------------~~~~~~~~~~~~~---~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .   .             ...-.+.......   ..+..+++.+||+.+|.+|.|++.++++
T Consensus       241 ~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  241 NEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             CccCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence            0   0             0000011111111   1478999999999999999999998764

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=5.8e-37  Score=265.87  Aligned_cols=177  Identities=20%  Similarity=0.215  Sum_probs=143.5

Q ss_pred             cccCCCCCCCCcchhHHHH--------HHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEe--CCcceEEEEeCC
Q 048314           27 SSLNDRNSPRSKSVWSCMR--------ALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--GSKPSTEAALDL   96 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~--------~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~e~~~   96 (274)
                      .+.+|.|+|  |.||++..        .++|..........+.+|+.++++++||||+++++++..  +...++||||+.
T Consensus         6 g~~lG~G~~--g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07867           6 GCKVGRGTY--GHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAE   83 (317)
T ss_pred             ceEeccCCC--eeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC
Confidence            467999999  99999831        112222222233457799999999999999999999854  556799999987


Q ss_pred             CCCHHHHHHhC-------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE----cCCCcEEEeccccc
Q 048314           97 PWDLAYIIFCS-------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKISDFGLA  165 (274)
Q Consensus        97 ~gsL~~~l~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~----~~~~~~kl~d~g~~  165 (274)
                       ++|.+++...       ....+++..++.++.|++.||.|||+.   +++||||||+||++    +.++.+||+|||++
T Consensus        84 -~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a  159 (317)
T cd07867          84 -HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFA  159 (317)
T ss_pred             -CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEccCCCCCCcEEEeeccce
Confidence             4788887532       123489999999999999999999999   99999999999999    45678999999998


Q ss_pred             eecC--------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccc
Q 048314          166 KLLS--------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEI  209 (274)
Q Consensus       166 ~~~~--------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~  209 (274)
                      +...              +..|+|||.+... .++.++||||||+++|||++|..||..
T Consensus       160 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~  218 (317)
T cd07867         160 RLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             eccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence            6532              4569999988764 578999999999999999999999964

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-37  Score=263.06  Aligned_cols=234  Identities=18%  Similarity=0.144  Sum_probs=183.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .++|...+.+|.|++  |.||++..      .++|.....  ...+.+.+|++++++++||||+++++.+.++...++||
T Consensus         4 ~~~~~i~~~l~~g~~--~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd06611           4 NDIWEIIGELGDGAF--GKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILI   81 (280)
T ss_pred             hhHHHHHHHhcCCCC--ceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEe
Confidence            456777788999999  99999822      112221111  22345778999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      ||+++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+|++|+||+++.++.++++|||.+...    
T Consensus        82 e~~~~~~L~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~  157 (280)
T cd06611          82 EFCDGGALDSIMLE-LERGLTEPQIRYVCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTL  157 (280)
T ss_pred             eccCCCcHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEECCCCCEEEccCccchhhcccc
Confidence            99999999999976 345799999999999999999999999   9999999999999999999999999987532    


Q ss_pred             -------CCCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          169 -------SDKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       169 -------~~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                             ++..|++||.+.     ...++.++|+||||+++|+|++|..||.....   ......     ........  
T Consensus       158 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~---~~~~~~-----~~~~~~~~--  227 (280)
T cd06611         158 QKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNP---MRVLLK-----ILKSEPPT--  227 (280)
T ss_pred             cccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCH---HHHHHH-----HhcCCCCC--
Confidence                   255799999875     33567899999999999999999999964311   110100     01100000  


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                        ...+...+..+.+++..||+.||.+|||+.++++
T Consensus       228 --~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (280)
T cd06611         228 --LDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLK  261 (280)
T ss_pred             --cCCcccCCHHHHHHHHHHhccChhhCcCHHHHhc
Confidence              0123345678899999999999999999999986

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5e-37  Score=260.29  Aligned_cols=238  Identities=16%  Similarity=0.115  Sum_probs=183.9

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcC-CCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCC----
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS-PYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGS----   86 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~----   86 (274)
                      ..+++|.....+|.|++  |.||++..      .+++.... ....+.+.+|+.+++++ .|+||+++++++.+..    
T Consensus         3 ~~~~~y~~~~~l~~g~~--~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   80 (275)
T cd06608           3 DPTGIFELVEVIGEGTY--GKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGN   80 (275)
T ss_pred             CchhheeheeeecCCCC--eEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCc
Confidence            45788999999999999  99999822      11111111 12235678999999999 6999999999997644    


Q ss_pred             --cceEEEEeCCCCCHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           87 --KPSTEAALDLPWDLAYIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        87 --~~~lv~e~~~~gsL~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                        ..++||||+++++|.+++....  ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++||
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~~l~p~ni~~~~~~~~~l~d~  157 (275)
T cd06608          81 DDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDF  157 (275)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEEccCCeEEECCC
Confidence              4899999999999999987533  45799999999999999999999999   9999999999999999999999999


Q ss_pred             ccceecC-----------CCCcCCCccccc-----CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH
Q 048314          163 GLAKLLS-----------DKGCMAPECYKR-----TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC  226 (274)
Q Consensus       163 g~~~~~~-----------~~~~~ape~~~~-----~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~  226 (274)
                      |.+....           +..|+|||.+..     ..++.++|+||||++++++++|..||.....   ...+.    . 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~---~~~~~----~-  229 (275)
T cd06608         158 GVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHP---MRALF----K-  229 (275)
T ss_pred             ccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccch---HHHHH----H-
Confidence            9876432           456999998753     2467889999999999999999999963211   00010    0 


Q ss_pred             HhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          227 FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ......    .....+...+..+.+++.+||..||++|||+.++++.
T Consensus       230 ~~~~~~----~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~  272 (275)
T cd06608         230 IPRNPP----PTLKSPENWSKKFNDFISECLIKNYEQRPFMEELLEH  272 (275)
T ss_pred             hhccCC----CCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence            000000    0112233456789999999999999999999999863

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=5.5e-37  Score=259.65  Aligned_cols=235  Identities=16%  Similarity=0.121  Sum_probs=182.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .++|...+.+|.|++  |.||++..      .++|.....  .....+.+|+.+++.++||||+++++.+.+.+..+++|
T Consensus         8 ~~~~~~~~~lg~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~   85 (267)
T cd06645           8 QEDFELIQRIGSGTY--GDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICM   85 (267)
T ss_pred             HHHHHHHHHhCCCCC--eEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEE
Confidence            357777888999999  99998821      112222211  22334678999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      ||+++++|.+++..  .+.+++..+..++.|++.|+.|||+.   +++|+||||+||+++.++.++|+|||.+...    
T Consensus        86 e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd06645          86 EFCGGGSLQDIYHV--TGPLSESQIAYVSRETLQGLYYLHSK---GKMHRDIKGANILLTDNGHVKLADFGVSAQITATI  160 (267)
T ss_pred             eccCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECcceeeeEccCcc
Confidence            99999999999975  45799999999999999999999999   9999999999999999999999999987543    


Q ss_pred             -------CCCCcCCCcccc---cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          169 -------SDKGCMAPECYK---RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       169 -------~~~~~~ape~~~---~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                             ++..|+|||.+.   ...++.++|+|||||++|+|++|..||..... ..  .+..     .......   .+
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~-~~--~~~~-----~~~~~~~---~~  229 (267)
T cd06645         161 AKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHP-MR--ALFL-----MTKSNFQ---PP  229 (267)
T ss_pred             cccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccc-hh--hHHh-----hhccCCC---CC
Confidence                   256799999874   44578899999999999999999999853311 10  0000     0000000   00


Q ss_pred             C-ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          239 T-EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       239 ~-~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      . ......+..+.+++.+||+.||++|||+++|++.
T Consensus       230 ~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~  265 (267)
T cd06645         230 KLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQH  265 (267)
T ss_pred             cccccCCCCHHHHHHHHHHccCCchhCcCHHHHhcC
Confidence            0 0111234678999999999999999999999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=6.9e-37  Score=263.46  Aligned_cols=231  Identities=15%  Similarity=0.164  Sum_probs=184.5

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcC--CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNS--PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .+|.....+|.|++  |.||+|.      ..++|....  ....+.+.+|+.+++.++||||+++++++.+.+..++|+|
T Consensus        19 ~~y~~~~~lg~g~~--g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   96 (296)
T cd06655          19 KKYTRYEKIGQGAS--GTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVME   96 (296)
T ss_pred             ceEEEEEEEecCCC--eEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEE
Confidence            35788889999999  9999872      111222221  1234567789999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-----  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-----  168 (274)
                      |+++++|.+++..   ..+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++...     
T Consensus        97 ~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~---~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~  170 (296)
T cd06655          97 YLAGGSLTDVVTE---TCMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQS  170 (296)
T ss_pred             ecCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccchhcccccc
Confidence            9999999999864   4589999999999999999999999   9999999999999999999999999987542     


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            .+..|+|||.+....++.++|+||||+++|++++|..||..... ...  ..    . .....    ......+
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~-~~~--~~----~-~~~~~----~~~~~~~  238 (296)
T cd06655         171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP-LRA--LY----L-IATNG----TPELQNP  238 (296)
T ss_pred             cCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHH--HH----H-HHhcC----CcccCCc
Confidence                  24569999999888889999999999999999999999964311 110  00    0 00000    0011233


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+..+.+++.+||..||++|||+.+++.
T Consensus       239 ~~~~~~~~~li~~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         239 EKLSPIFRDFLNRCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             ccCCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence            445667899999999999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-36  Score=265.46  Aligned_cols=231  Identities=17%  Similarity=0.152  Sum_probs=188.5

Q ss_pred             hccccccCCCCCCCCcchhHH-------HHHH----HHHhcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC-------MRAL----MATVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~-------~~~~----~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~l   90 (274)
                      .|.-...+|.|.|  |.||++       ..+.    ++......+.+...+|+.+|+++. |||||++.+.+.+....++
T Consensus        36 ~Y~l~~~lG~G~F--g~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   36 KYELGRELGRGQF--GVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             cEEehhhhCCCCc--eEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            4555688999999  999998       1111    222222234467789999999999 9999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC----CcEEEeccccce
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF----WTAKISDFGLAK  166 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~----~~~kl~d~g~~~  166 (274)
                      |||+|.||.|.+.+...   .+++.....++.|++.++.|||+.   +++|||+||+|+|+...    +.++++|||++.
T Consensus       114 vmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~---gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~  187 (382)
T KOG0032|consen  114 VMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSL---GVVHRDLKPENLLLASKDEGSGRIKLIDFGLAK  187 (382)
T ss_pred             EEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhC---CceeccCCHHHeeeccccCCCCcEEEeeCCCce
Confidence            99999999999999874   399999999999999999999999   99999999999998643    479999999997


Q ss_pred             ecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          167 LLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       167 ~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      ...          ++.|+|||++...+|+..+||||+|+++|.|++|.+||.......   ...     .+..+   ++-
T Consensus       188 ~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~---~~~-----~i~~~---~~~  256 (382)
T KOG0032|consen  188 FIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFE---IFL-----AILRG---DFD  256 (382)
T ss_pred             EccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhH---HHH-----HHHcC---CCC
Confidence            644          788999999999999999999999999999999999997552111   111     11111   111


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+.....+..+.++++.|+..||.+|+|++++++
T Consensus       257 f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~  292 (382)
T KOG0032|consen  257 FTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQ  292 (382)
T ss_pred             CCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhc
Confidence            122344566889999999999999999999999986

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=6.1e-37  Score=261.65  Aligned_cols=240  Identities=16%  Similarity=0.159  Sum_probs=179.2

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      |...+.+|.|++  |.||++..      .++|...    .......+.+|+.++++++||||+++++++.+.+..++++|
T Consensus         2 y~~~~~l~~g~~--~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (284)
T cd07839           2 YEKLEKIGEGTY--GTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFE   79 (284)
T ss_pred             ceeEEEecccCC--eEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEe
Confidence            556678999999  99998821      1112111    11233567789999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+. ++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++....    
T Consensus        80 ~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~  154 (284)
T cd07839          80 YCD-QDLKKYFDS-CNGDIDPEIVKSFMFQLLKGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVR  154 (284)
T ss_pred             cCC-CCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEcCCCcEEECccchhhccCCCCC
Confidence            997 588888865 345699999999999999999999999   99999999999999999999999999886432    


Q ss_pred             -------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh------hhhhh
Q 048314          170 -------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR------ELNKL  235 (274)
Q Consensus       170 -------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  235 (274)
                             +..|+|||.+.+. .++.++|+||||+++|+|++|..|+.........  +.. ........      .....
T Consensus       155 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~  231 (284)
T cd07839         155 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQ--LKR-IFRLLGTPTEESWPGVSKL  231 (284)
T ss_pred             CcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHH--HHH-HHHHhCCCChHHhHHhhhc
Confidence                   4569999988664 4688999999999999999999887543221111  110 00000000      00000


Q ss_pred             hc----CC--------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          236 VR----GT--------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       236 ~~----~~--------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .+    +.        ......+..+.+++.+||+.||.+|||++++++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h  281 (284)
T cd07839         232 PDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQH  281 (284)
T ss_pred             ccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhcC
Confidence            00    00        0112345788999999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=1.3e-36  Score=259.68  Aligned_cols=245  Identities=18%  Similarity=0.178  Sum_probs=181.3

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|...+.+|.|++  |.||++..      .+++....    ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus         1 ~y~~~~~l~~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (284)
T cd07860           1 NFQKVEKIGEGTY--GVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF   78 (284)
T ss_pred             CceeeeeecCCCc--eEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEe
Confidence            4667788999999  99999821      11222211    122346789999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+. ++|.+++.......+++..+..++.|++.||+|||+.   +++|+|++|+||+++.++.++++|||++....   
T Consensus        79 e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~  154 (284)
T cd07860          79 EFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV  154 (284)
T ss_pred             eccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEeeccchhhcccCc
Confidence            9996 6899999765556799999999999999999999999   99999999999999999999999999876432   


Q ss_pred             --------CCCcCCCcccccCC-CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH-------HHHHhh----
Q 048314          170 --------DKGCMAPECYKRTP-ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV-------YKCFIN----  229 (274)
Q Consensus       170 --------~~~~~ape~~~~~~-~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~-------~~~~~~----  229 (274)
                              +..|+|||.+.+.. ++.++|+||||+++|+|++|+.||................       +.....    
T Consensus       155 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (284)
T cd07860         155 RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDY  234 (284)
T ss_pred             cccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHH
Confidence                    34699999886644 5788999999999999999999996432111100000000       000000    


Q ss_pred             -hhhhhhhcCC--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          230 -RELNKLVRGT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       230 -~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                       ..........  ......+..+.+++.+||+.||++|||++++++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  281 (284)
T cd07860         235 KPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALAH  281 (284)
T ss_pred             HhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhcC
Confidence             0000000000  0111234678899999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=3.7e-37  Score=262.32  Aligned_cols=229  Identities=18%  Similarity=0.168  Sum_probs=182.2

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .|+....+|.|++  |.||+|..      .++|.....   ...+.+.+|+.++++++||||+++++++..++..++|||
T Consensus         5 ~y~~~~~l~~g~~--~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06642           5 LFTKLERIGKGSF--GEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIME   82 (277)
T ss_pred             HHHHHHHhcCCCC--eeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEE
Confidence            4555677999999  99999821      122222211   122356799999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++++|.+++..   ..+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.++++|||++....    
T Consensus        83 ~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~---~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06642          83 YLGGGSALDLLKP---GPLEETYIATILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI  156 (277)
T ss_pred             ccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhcC---CeeccCCChheEEEeCCCCEEEccccccccccCcch
Confidence            9999999999864   5689999999999999999999999   99999999999999999999999999886532    


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                             +..|+|||.+....++.++|+||||+++++|++|..|+.....  ..  ...    .....     . ....+
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~--~~--~~~----~~~~~-----~-~~~~~  222 (277)
T cd06642         157 KRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHP--MR--VLF----LIPKN-----S-PPTLE  222 (277)
T ss_pred             hhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccch--hh--HHh----hhhcC-----C-CCCCC
Confidence                   4569999999888889999999999999999999999853311  00  000    00000     0 11123


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ...+..+.+++.+||+.+|++|||+.++++.
T Consensus       223 ~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         223 GQYSKPFKEFVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             cccCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence            3456778999999999999999999999863

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=1.5e-36  Score=262.34  Aligned_cols=231  Identities=18%  Similarity=0.153  Sum_probs=179.6

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhc-----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN-----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.+|.|+|  |.||++..      .+++...     .....+.+.+|+.+++.++||||+++++.+.+++..++
T Consensus         1 ~~y~~~~~l~~g~~--~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~l   78 (305)
T cd05609           1 EDFETIKLISNGAY--GAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCM   78 (305)
T ss_pred             CCceEeeEeecCCC--eeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEE
Confidence            36777889999999  99997711      1111111     11223456789999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee---
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL---  167 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~---  167 (274)
                      ||||+++++|.+++..  .+.+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.++.   
T Consensus        79 v~e~~~g~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~  153 (305)
T cd05609          79 VMEYVEGGDCATLLKN--IGALPVDMARMYFAETVLALEYLHNY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLM  153 (305)
T ss_pred             EEecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHEEECCCCCEEEeeCCCccccCc
Confidence            9999999999999975  35689999999999999999999999   999999999999999999999999998753   


Q ss_pred             -----------------------cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH
Q 048314          168 -----------------------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY  224 (274)
Q Consensus       168 -----------------------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~  224 (274)
                                             ..+..|+|||.+....++.++|+||||+++|++++|..||....  ...     .. 
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~--~~~-----~~-  225 (305)
T cd05609         154 SLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDT--PEE-----LF-  225 (305)
T ss_pred             CccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHH-----HH-
Confidence                                   12446999999988888999999999999999999999996331  110     00 


Q ss_pred             HHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHH
Q 048314          225 KCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVV  271 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl  271 (274)
                      ......   ....+. .+...+..+.+++.+||+.||++|||..++.
T Consensus       226 ~~~~~~---~~~~~~-~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~  268 (305)
T cd05609         226 GQVISD---DIEWPE-GDEALPADAQDLISRLLRQNPLERLGTGGAF  268 (305)
T ss_pred             HHHHhc---ccCCCC-ccccCCHHHHHHHHHHhccChhhccCccCHH
Confidence            000111   111111 1124567789999999999999999854443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-36  Score=258.76  Aligned_cols=228  Identities=19%  Similarity=0.152  Sum_probs=182.6

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      +|...+.+|.|++  |.||++..      .+++.....   .....+.+|+.++++++|+||+++++.+.++...++|+|
T Consensus         2 ~y~~~~~lg~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (274)
T cd06609           2 LFTLLECIGKGSF--GEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIME   79 (274)
T ss_pred             hhhhhhhhcCCCC--eEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEE
Confidence            4666788999999  99998821      122222211   223456789999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++++|.+++..   ..+++..+..++.|++.|+.|||+.   +++|+|++|+||+++.++.++++|||++....    
T Consensus        80 ~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  153 (274)
T cd06609          80 YCGGGSCLDLLKP---GKLDETYIAFILREVLLGLEYLHEE---GKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMS  153 (274)
T ss_pred             eeCCCcHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEcccccceeeccccc
Confidence            9999999999975   3789999999999999999999999   99999999999999999999999999886543    


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                             +..|++||.+....++.++|+||||+++|+|++|..||.... + ..  ..    ......     . +...+
T Consensus       154 ~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~-~-~~--~~----~~~~~~-----~-~~~~~  219 (274)
T cd06609         154 KRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLH-P-MR--VL----FLIPKN-----N-PPSLE  219 (274)
T ss_pred             ccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCc-h-HH--HH----HHhhhc-----C-CCCCc
Confidence                   345999999988889999999999999999999999996431 1 00  00    000011     1 11112


Q ss_pred             HH-HHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          243 KK-NLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       243 ~~-~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .. .+..+.+++.+||..||++|||++++++
T Consensus       220 ~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         220 GNKFSKPFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             ccccCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            22 5677999999999999999999999976

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=3.8e-37  Score=271.54  Aligned_cols=244  Identities=18%  Similarity=0.147  Sum_probs=179.9

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeC---
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG---   85 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~---   85 (274)
                      ...++|...+.+|.|+|  |.||++..      .++|.+...    .....+.+|+.+++.++||||+++++++...   
T Consensus        14 ~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   91 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQ--GIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSL   91 (355)
T ss_pred             hhhhceeEEEEeeecCC--EEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccc
Confidence            34678888999999999  99998721      112222211    1234566899999999999999999988643   


Q ss_pred             ---CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           86 ---SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        86 ---~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                         ...++||||+.+ +|.+.+..    .+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+||
T Consensus        92 ~~~~~~~lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~---givHrDikp~Nill~~~~~~kl~Df  163 (355)
T cd07874          92 EEFQDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDF  163 (355)
T ss_pred             cccceeEEEhhhhcc-cHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEECCCCCEEEeeC
Confidence               357999999974 67777753    589999999999999999999999   9999999999999999999999999


Q ss_pred             ccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH-------HH
Q 048314          163 GLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV-------YK  225 (274)
Q Consensus       163 g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~-------~~  225 (274)
                      |+++...          +..|+|||.+.+..++.++|+|||||++|+|++|+.||................       ..
T Consensus       164 g~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  243 (355)
T cd07874         164 GLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMK  243 (355)
T ss_pred             cccccCCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            9986532          567999999988889999999999999999999999996432111000000000       00


Q ss_pred             HHhhhhhhhhhcC---------------C------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          226 CFINRELNKLVRG---------------T------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       226 ~~~~~~~~~~~~~---------------~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ... ......+..               .      ..+......+.+++.+||+.||++|||+.|+++.
T Consensus       244 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         244 KLQ-PTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             hhc-HHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence            000 000000000               0      1112234678999999999999999999999863

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=1.5e-36  Score=259.18  Aligned_cols=244  Identities=17%  Similarity=0.146  Sum_probs=181.2

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhc-C---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVN-S---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|.....+|.|++  |.||++..      .++|... .   ....+.+.+|+.++++++|||++++++++.+....++||
T Consensus         2 ~y~~~~~l~~g~~--~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   79 (286)
T cd07847           2 KYEKLSKIGEGSY--GVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVF   79 (286)
T ss_pred             ceeeeeeecccCC--eEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEE
Confidence            5667788999999  99999821      1122111 1   122345679999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++++|..++..  ...+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++....   
T Consensus        80 e~~~~~~l~~~~~~--~~~~~~~~~~~~~~ql~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  154 (286)
T cd07847          80 EYCDHTVLNELEKN--PRGVPEHLIKKIIWQTLQAVNFCHKH---NCIHRDVKPENILITKQGQIKLCDFGFARILTGPG  154 (286)
T ss_pred             eccCccHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCChhhEEEcCCCcEEECccccceecCCCc
Confidence            99999988888764  44699999999999999999999999   99999999999999999999999999987543   


Q ss_pred             --------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh-------hh-h
Q 048314          170 --------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN-------RE-L  232 (274)
Q Consensus       170 --------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-------~~-~  232 (274)
                              +..|+|||.+.. ..++.++|+||||+++|+|++|..||......................       .. .
T Consensus       155 ~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (286)
T cd07847         155 DDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFF  234 (286)
T ss_pred             ccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhccccccc
Confidence                    346899998865 457889999999999999999999996432111111111000000000       00 0


Q ss_pred             hhhhcCCc---c-----CHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          233 NKLVRGTE---V-----DKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       233 ~~~~~~~~---~-----~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .....+..   .     ....+..+.+++.+||+.||++|||+.|++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~  283 (286)
T cd07847         235 KGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLEH  283 (286)
T ss_pred             ccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhcC
Confidence            00000000   0     01235678999999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=1.6e-36  Score=258.40  Aligned_cols=229  Identities=18%  Similarity=0.158  Sum_probs=183.9

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .|...+.+|.|++  |.||+|..      .++|.....   .....+.+|+.+++++.||||+++++.+.+++..++|||
T Consensus         5 ~y~~~~~lg~g~~--~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06640           5 LFTKLERIGKGSF--GEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIME   82 (277)
T ss_pred             hhhhhhhcccCCC--eEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEe
Confidence            4556677999999  99999821      122222211   123457789999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++|+|.+++..   ..+++.....++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+....    
T Consensus        83 ~~~~~~L~~~i~~---~~l~~~~~~~~~~~l~~~l~~lh~~---~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06640          83 YLGGGSALDLLRA---GPFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI  156 (277)
T ss_pred             cCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CccCcCCChhhEEEcCCCCEEEcccccceeccCCcc
Confidence            9999999999864   4689999999999999999999999   99999999999999999999999999985433    


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                             +..|+|||.+....++.++|+||||+++|+|++|..||.... +..   ..    .....      ..+...+
T Consensus       157 ~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~-~~~---~~----~~~~~------~~~~~~~  222 (277)
T cd06640         157 KRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMH-PMR---VL----FLIPK------NNPPTLT  222 (277)
T ss_pred             ccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcC-hHh---Hh----hhhhc------CCCCCCc
Confidence                   345899999988888999999999999999999999986431 100   00    00000      0112345


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ...+..+.+++.+||+.+|++|||+.+++..
T Consensus       223 ~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         223 GEFSKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             hhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence            5667889999999999999999999999753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=1.9e-36  Score=254.33  Aligned_cols=230  Identities=20%  Similarity=0.225  Sum_probs=183.1

Q ss_pred             ccccCCCCCCCCcchhHHHHH----------HHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           26 RSSLNDRNSPRSKSVWSCMRA----------LMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        26 ~~~~~g~g~~~~g~vy~~~~~----------~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ....+|.|+|  |.||++...          ++|......   ..+.+..|+.++..++|+||+++++++.+.+..+++|
T Consensus         3 ~~~~lg~g~~--g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~   80 (258)
T smart00219        3 LGKKLGEGAF--GEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVM   80 (258)
T ss_pred             ccceeccCCC--cceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEE
Confidence            4567999999  999988221          122222221   2446779999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++++|.+++.......+++..+..++.|++.||.+||+.   +++|+|++|+||+++.++.++++|||.+....   
T Consensus        81 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~---~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~  157 (258)
T smart00219       81 EYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD  157 (258)
T ss_pred             eccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC---CeeecccccceEEEccCCeEEEcccCCceeccccc
Confidence            999999999999863333399999999999999999999999   99999999999999999999999999986543   


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               +..|++||.+....++.++|+||+|+++++|++ |..||....    ...+..    ......      ..
T Consensus       158 ~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~----~~~~~~----~~~~~~------~~  223 (258)
T smart00219      158 YYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMS----NEEVLE----YLKKGY------RL  223 (258)
T ss_pred             ccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCC----HHHHHH----HHhcCC------CC
Confidence                     256999999987888999999999999999998 778775321    111111    011110      01


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       224 ~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      224 PKPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             CCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence            23334667899999999999999999999999876

Phosphotransferases. Tyrosine-specific kinase subfamily.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=8.7e-37  Score=289.60  Aligned_cols=232  Identities=19%  Similarity=0.222  Sum_probs=180.9

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.+|+|+|  |.||+|.      ..++|.+...     ...+++.+|++++++++||||+++++++.+++..++
T Consensus         2 grYeIi~~LGkGgf--G~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyL   79 (932)
T PRK13184          2 QRYDIIRLIGKGGM--GEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYY   79 (932)
T ss_pred             CCeEEEEEEecCCC--EEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEE
Confidence            46777889999999  9999982      1122222211     113457899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCC---------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 048314           91 EAALDLPWDLAYIIFCSA---------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD  161 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  161 (274)
                      +|||+++|+|.+++....         ...+++..++.++.|++.||+|||+.   +++||||||+||+++.++.++++|
T Consensus        80 VMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~---GIIHRDLKPeNILLd~dg~vKLiD  156 (932)
T PRK13184         80 TMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVVILD  156 (932)
T ss_pred             EEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC---CccccCCchheEEEcCCCCEEEEe
Confidence            999999999999987421         13367788899999999999999999   999999999999999999999999


Q ss_pred             cccceec-----------------------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCC
Q 048314          162 FGLAKLL-----------------------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDAS  212 (274)
Q Consensus       162 ~g~~~~~-----------------------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~  212 (274)
                      ||++...                             +++.|+|||.+.+..++.++|||||||++|||++|..||.....
T Consensus       157 FGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~  236 (932)
T PRK13184        157 WGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKG  236 (932)
T ss_pred             cCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcch
Confidence            9998644                             36679999999988899999999999999999999999964311


Q ss_pred             ChhhHHHHHHHHHHHhhhhhhhhhcCC--ccCHHHHHHHHHHHHHhhccCCCCCCC-hhhHHh
Q 048314          213 KPEEIILTNWVYKCFINRELNKLVRGT--EVDKKNLENLVKVGLWCVQDEPALRPS-MKCVVM  272 (274)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps-~~evl~  272 (274)
                      .  ...         ...   ....+.  ......+..+.+++.+||+.||++||+ +.++++
T Consensus       237 ~--ki~---------~~~---~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~  285 (932)
T PRK13184        237 R--KIS---------YRD---VILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQ  285 (932)
T ss_pred             h--hhh---------hhh---hccChhhccccccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            1  000         000   000111  011234567889999999999999976 444443

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.7e-36  Score=259.63  Aligned_cols=241  Identities=23%  Similarity=0.213  Sum_probs=184.0

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEe--CCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--GSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv   91 (274)
                      +|.....+|.|.+  |.||++..      .+++.....   ....++.+|++++++++||||+++++++.+  .+.+++|
T Consensus         2 ~~~~~~~lg~g~~--~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv   79 (287)
T cd06621           2 KIVELSRLGEGAG--GSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIA   79 (287)
T ss_pred             ceEEEEEeccCCc--eEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEE
Confidence            5667788999999  99998822      122222211   123457899999999999999999999865  4478999


Q ss_pred             EEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           92 AALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      |||+++++|.+++...  ....+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.++++|||++....
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~  156 (287)
T cd06621          80 MEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGVSGELV  156 (287)
T ss_pred             EEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecCCeEEEeecccccccc
Confidence            9999999999987642  345689999999999999999999999   99999999999999999999999999875422


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCCh-hhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKP-EEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               +..|++||.+....++.++|+||+|+++|+|++|..||.....+. ....+..+..    ........+..
T Consensus       157 ~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  232 (287)
T cd06621         157 NSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIV----NMPNPELKDEP  232 (287)
T ss_pred             ccccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHh----cCCchhhccCC
Confidence                     456999999988889999999999999999999999997542211 1111111111    10111111111


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ......+..+.+++.+||+.||++|||+.|+++
T Consensus       233 ~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         233 GNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             CCCCchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence            111235678999999999999999999999986

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=4.2e-37  Score=292.99  Aligned_cols=238  Identities=16%  Similarity=0.108  Sum_probs=180.5

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEe--CC
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--GS   86 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~   86 (274)
                      ...++|.....||.|+|  |.||++..      .+++.+..    ......+..|+.++++++|||||++++++.+  ..
T Consensus        10 ~~l~~YeIl~kLG~GgF--GtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~   87 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRF--GEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQ   87 (1021)
T ss_pred             cccCCEEEEEEEecCCC--eEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCC
Confidence            34568888999999999  99998811      11121111    1223457799999999999999999998865  45


Q ss_pred             cceEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCC----CCcccCCCCCCceEEcC-------
Q 048314           87 KPSTEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECE----PPILHCDIKPQNILMDE-------  153 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~----~~i~h~dl~~~nil~~~-------  153 (274)
                      .++|||||+++|+|.++|...  ....+++..++.++.||+.||.|||+...    .+|+|+||||+|||+..       
T Consensus        88 ~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~  167 (1021)
T PTZ00266         88 KLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGK  167 (1021)
T ss_pred             EEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccc
Confidence            689999999999999999753  23569999999999999999999998511    25999999999999954       


Q ss_pred             ----------CCcEEEeccccceec----------CCCCcCCCccccc--CCCccccceeehhHhHHHHhhcCCCccccC
Q 048314          154 ----------FWTAKISDFGLAKLL----------SDKGCMAPECYKR--TPISVKADVYGYGIVLLETICCWENMEIDA  211 (274)
Q Consensus       154 ----------~~~~kl~d~g~~~~~----------~~~~~~ape~~~~--~~~~~~~Di~s~G~~l~el~~g~~p~~~~~  211 (274)
                                ...+||+|||++...          +++.|+|||++..  ..++.++|||||||++|+|++|..||....
T Consensus       168 i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~  247 (1021)
T PTZ00266        168 ITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKAN  247 (1021)
T ss_pred             ccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCC
Confidence                      235899999998643          3678999999864  357899999999999999999999996431


Q ss_pred             CChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          212 SKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...   .+   + ..+...       +.......+..+.+||..||+.+|.+|||+.|++.
T Consensus       248 ~~~---ql---i-~~lk~~-------p~lpi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        248 NFS---QL---I-SELKRG-------PDLPIKGKSKELNILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             cHH---HH---H-HHHhcC-------CCCCcCCCCHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence            110   01   0 101100       11111234578999999999999999999999874

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-37  Score=272.18  Aligned_cols=242  Identities=19%  Similarity=0.149  Sum_probs=193.9

Q ss_pred             cchhhhhhhHHHHhhhccccccCCCCCCCCcchhHH-------HHHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccc
Q 048314            8 TSAWIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSP----YSPSRPLTLTSIVSRVSWTTDI   76 (274)
Q Consensus         8 ~~~~~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv   76 (274)
                      |+.+|..++=   -..|+..+-||-|+|  |.||-+       +++++|..-+.    +...+.+.|++.|.+++|||+|
T Consensus        15 iA~LF~k~DP---Eklf~dLrEIGHGSF--GAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPnti   89 (948)
T KOG0577|consen   15 IADLFFKDDP---EKLFSDLREIGHGSF--GAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTI   89 (948)
T ss_pred             HHHHHccCCH---HHHHHHHHHhcCCcc--ceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcc
Confidence            4555555543   234555667999999  999988       45555533222    2345568999999999999999


Q ss_pred             eEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 048314           77 EVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT  156 (274)
Q Consensus        77 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~  156 (274)
                      .+-|+|......+||||||- ||-.|.+.- ...++.+-.+..++.+.+.||+|||+.   +.||||||..|||+.+.+.
T Consensus        90 eYkgCyLre~TaWLVMEYCl-GSAsDlleV-hkKplqEvEIAAi~~gaL~gLaYLHS~---~~IHRDiKAGNILLse~g~  164 (948)
T KOG0577|consen   90 EYKGCYLREHTAWLVMEYCL-GSASDLLEV-HKKPLQEVEIAAITHGALQGLAYLHSH---NRIHRDIKAGNILLSEPGL  164 (948)
T ss_pred             cccceeeccchHHHHHHHHh-ccHHHHHHH-HhccchHHHHHHHHHHHHHHHHHHHHh---hHHhhhccccceEecCCCe
Confidence            99999999999999999996 578888875 456899999999999999999999999   9999999999999999999


Q ss_pred             EEEeccccce-------ecCCCCcCCCccccc---CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH
Q 048314          157 AKISDFGLAK-------LLSDKGCMAPECYKR---TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC  226 (274)
Q Consensus       157 ~kl~d~g~~~-------~~~~~~~~ape~~~~---~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~  226 (274)
                      +||+|||.+.       +.+||.|||||++.-   +.|+.++||||+|+++.|+..+++|+..-       +-...+...
T Consensus       165 VKLaDFGSAsi~~PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnM-------NAMSALYHI  237 (948)
T KOG0577|consen  165 VKLADFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM-------NAMSALYHI  237 (948)
T ss_pred             eeeccccchhhcCchhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCc-------hHHHHHHHH
Confidence            9999999885       456999999998863   57999999999999999999999998532       111111111


Q ss_pred             HhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          227 FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+.      .|.....+++..+..++..||++-|.+|||.++++.
T Consensus       238 AQNe------sPtLqs~eWS~~F~~Fvd~CLqKipqeRptse~ll~  277 (948)
T KOG0577|consen  238 AQNE------SPTLQSNEWSDYFRNFVDSCLQKIPQERPTSEELLK  277 (948)
T ss_pred             HhcC------CCCCCCchhHHHHHHHHHHHHhhCcccCCcHHHHhh
Confidence            1111      122356688999999999999999999999999875

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=4e-37  Score=280.78  Aligned_cols=247  Identities=15%  Similarity=0.153  Sum_probs=177.2

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcC-CCCCCcHHHHHHHHhcCCCC------ccceEeEEEE
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS-PYSPSRPLTLTSIVSRVSWT------TDIEVSSVAM   83 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~-~~~~~~~~~e~~~l~~l~h~------niv~l~~~~~   83 (274)
                      +...+++|...+.||.|+|  |.||++..      .++|.++. ....+.+..|+.++..++|.      +++++++++.
T Consensus       124 ~~~~~~~y~i~~~lG~G~f--g~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~  201 (467)
T PTZ00284        124 IDVSTQRFKILSLLGEGTF--GKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQ  201 (467)
T ss_pred             cccCCCcEEEEEEEEeccC--EEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEE
Confidence            3445678888999999999  99999821      12222221 12233456688888777654      5888998886


Q ss_pred             eC-CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCC------
Q 048314           84 RG-SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFW------  155 (274)
Q Consensus        84 ~~-~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~------  155 (274)
                      .. ++.++|||++ +++|.+++..  .+.+++..+..++.|++.||.|||+ .   +|+||||||+|||++.++      
T Consensus       202 ~~~~~~~iv~~~~-g~~l~~~l~~--~~~l~~~~~~~i~~qi~~aL~yLH~~~---gIiHrDlKP~NILl~~~~~~~~~~  275 (467)
T PTZ00284        202 NETGHMCIVMPKY-GPCLLDWIMK--HGPFSHRHLAQIIFQTGVALDYFHTEL---HLMHTDLKPENILMETSDTVVDPV  275 (467)
T ss_pred             cCCceEEEEEecc-CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEecCCcccccc
Confidence            54 5789999987 6789998875  4579999999999999999999997 6   999999999999998654      


Q ss_pred             ----------cEEEecccccee--------cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhH
Q 048314          156 ----------TAKISDFGLAKL--------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI  217 (274)
Q Consensus       156 ----------~~kl~d~g~~~~--------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~  217 (274)
                                .+||+|||.+..        .++..|+|||++.+..++.++|||||||++|||++|+.||..... ....
T Consensus       276 ~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~-~~~~  354 (467)
T PTZ00284        276 TNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDN-LEHL  354 (467)
T ss_pred             cccccCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh-HHHH
Confidence                      489999997643        346789999999988999999999999999999999999975421 1111


Q ss_pred             HHHH---------HHHHH--------Hhh----------hhhhhhhcCC-ccCHHHHHHHHHHHHHhhccCCCCCCChhh
Q 048314          218 ILTN---------WVYKC--------FIN----------RELNKLVRGT-EVDKKNLENLVKVGLWCVQDEPALRPSMKC  269 (274)
Q Consensus       218 ~~~~---------~~~~~--------~~~----------~~~~~~~~~~-~~~~~~~~~~~~li~~cl~~dp~~Rps~~e  269 (274)
                      ....         |....        +..          .....+.... .........+.+||.+||++||++|||++|
T Consensus       355 ~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e  434 (467)
T PTZ00284        355 HLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQ  434 (467)
T ss_pred             HHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHH
Confidence            1100         00000        000          0000000000 001112356889999999999999999999


Q ss_pred             HHh
Q 048314          270 VVM  272 (274)
Q Consensus       270 vl~  272 (274)
                      +++
T Consensus       435 ~L~  437 (467)
T PTZ00284        435 MTT  437 (467)
T ss_pred             Hhc
Confidence            986

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=1.2e-36  Score=255.84  Aligned_cols=232  Identities=18%  Similarity=0.170  Sum_probs=183.3

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|...+.+|.|++  |.||+|..      .+++....    ....+.+.+|+.++++++|+||+++++.+.+.+..++++
T Consensus         1 ~~~~~~~l~~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   78 (257)
T cd08225           1 RYEIIKKIGEGSF--GKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVM   78 (257)
T ss_pred             CceEEEEecCCCc--ceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEE
Confidence            3566788999999  99998821      12222111    123456779999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEeccccceec---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKISDFGLAKLL---  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~d~g~~~~~---  168 (274)
                      ||+++++|.+++.......+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++ .++++|||.+...   
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~  155 (257)
T cd08225          79 EYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDS  155 (257)
T ss_pred             ecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEcCCCCeEEecccccchhccCC
Confidence            999999999999874445689999999999999999999999   999999999999998875 5699999987543   


Q ss_pred             --------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          169 --------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       169 --------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                              +++.|+|||.+....++.++|+||||++++++++|..||.....       .......     ......  .
T Consensus       156 ~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-------~~~~~~~-----~~~~~~--~  221 (257)
T cd08225         156 MELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNL-------HQLVLKI-----CQGYFA--P  221 (257)
T ss_pred             cccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccH-------HHHHHHH-----hcccCC--C
Confidence                    24569999998888889999999999999999999999864311       1111111     011111  1


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .+...+..+.+++.+||..+|++|||+.|++..
T Consensus       222 ~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~  254 (257)
T cd08225         222 ISPNFSRDLRSLISQLFKVSPRDRPSITSILKR  254 (257)
T ss_pred             CCCCCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence            233445689999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-36  Score=257.20  Aligned_cols=244  Identities=16%  Similarity=0.147  Sum_probs=182.7

Q ss_pred             hccccccCCCCCCCCcchhHHH------HHHHHHh----cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM------RALMATV----NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~----~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|...+.+|.|++  |.||++.      ..++|..    ......+.+.+|++++++++|+||+++++++.+++..+++|
T Consensus         2 ~y~~~~~i~~g~~--~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   79 (288)
T cd07833           2 KYEVLGVVGEGAY--GVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVF   79 (288)
T ss_pred             ceeEEEEecccCC--eeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEE
Confidence            5677788999999  9999971      1122222    22233466889999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||++++.+..+...  ...+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.++|+|||.+....   
T Consensus        80 e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~  154 (288)
T cd07833          80 EYVERTLLELLEAS--PGGLPPDAVRSYIWQLLQAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFARALRARP  154 (288)
T ss_pred             ecCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEEeeecccccCCCc
Confidence            99998777666543  45689999999999999999999999   99999999999999999999999999876533   


Q ss_pred             ---------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH-------Hh-hhh
Q 048314          170 ---------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC-------FI-NRE  231 (274)
Q Consensus       170 ---------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~-------~~-~~~  231 (274)
                               +..|+|||++... .++.++|+||||+++|+|++|..||...........+.......       .. +..
T Consensus       155 ~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (288)
T cd07833         155 ASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPR  234 (288)
T ss_pred             cccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCcc
Confidence                     3459999999887 78899999999999999999999986432111000000000000       00 000


Q ss_pred             -----hhhhhcCC----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          232 -----LNKLVRGT----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       232 -----~~~~~~~~----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                           ..+...+.    ..+...+..+.+++.+||+.||++|||++++++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  285 (288)
T cd07833         235 FAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQH  285 (288)
T ss_pred             ccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhcC
Confidence                 00000000    1222346889999999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=2.7e-36  Score=255.49  Aligned_cols=230  Identities=18%  Similarity=0.156  Sum_probs=178.7

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-------CCCCcHHHHHHHHhcCCCCccceEeEEEEe--CC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-------YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--GS   86 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~   86 (274)
                      .+|...+.+|.|++  |.||++..      .+++.....       ...+.+.+|+.++++++||||+++++++.+  ..
T Consensus         2 ~~~~~~~~lg~g~~--g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   79 (266)
T cd06651           2 INWRRGKLLGQGAF--GRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEK   79 (266)
T ss_pred             CCccccceecCCCC--EEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCC
Confidence            46888899999999  99999821      111211111       112346789999999999999999998875  35


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++++||+++++|.+++..  ...+++...+.++.|++.||.|||+.   +++|+|++|+||+++.++.++|+|||++.
T Consensus        80 ~~~l~~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~LH~~---~i~H~~l~p~nil~~~~~~~~l~dfg~~~  154 (266)
T cd06651          80 TLTIFMEYMPGGSVKDQLKA--YGALTESVTRKYTRQILEGMSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASK  154 (266)
T ss_pred             EEEEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCCCcc
Confidence            67899999999999999975  34689999999999999999999999   99999999999999999999999999875


Q ss_pred             ec--------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          167 LL--------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       167 ~~--------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      ..              ++..|+|||.+....++.++|+||||+++|++++|+.||..... .  ...    ...      
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~-~--~~~----~~~------  221 (266)
T cd06651         155 RLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEA-M--AAI----FKI------  221 (266)
T ss_pred             ccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccch-H--HHH----HHH------
Confidence            32              24469999999888889999999999999999999999963311 0  000    000      


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .........+....+.+.+++ .||..+|++|||++||++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         222 ATQPTNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             hcCCCCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence            000011123445566778887 688899999999999986

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.1e-36  Score=276.65  Aligned_cols=247  Identities=15%  Similarity=0.164  Sum_probs=176.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-------------------------HHHHHHh-cCCCCCCcHHHHHHHHhcCCCCc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-------------------------RALMATV-NSPYSPSRPLTLTSIVSRVSWTT   74 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-------------------------~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~n   74 (274)
                      .++|.....||+|+|  |.||+|.                         +.+.+.. ........+.+|+.+|++++|||
T Consensus       147 ~~~Y~ii~~LG~G~f--G~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hpn  224 (501)
T PHA03210        147 LAHFRVIDDLPAGAF--GKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHEN  224 (501)
T ss_pred             hhccEEEeEecCCCC--cceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCC
Confidence            467888899999999  9999651                         0011111 11122344679999999999999


Q ss_pred             cceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCC---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 048314           75 DIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSA---ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM  151 (274)
Q Consensus        75 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~---~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~  151 (274)
                      ||++++++.+.+..++++|++. ++|.+++....   ...........++.|++.||.|||+.   +|+||||||+|||+
T Consensus       225 Iv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~---gIiHrDLKP~NILl  300 (501)
T PHA03210        225 ILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDK---KLIHRDIKLENIFL  300 (501)
T ss_pred             cCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEE
Confidence            9999999999999999999985 57888776421   12234566778999999999999999   99999999999999


Q ss_pred             cCCCcEEEeccccceec------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHH
Q 048314          152 DEFWTAKISDFGLAKLL------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL  219 (274)
Q Consensus       152 ~~~~~~kl~d~g~~~~~------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~  219 (274)
                      +.++.+||+|||++...            ++..|+|||++.+..++.++|||||||++|||++|..++...........+
T Consensus       301 ~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~  380 (501)
T PHA03210        301 NCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQL  380 (501)
T ss_pred             CCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHH
Confidence            99999999999998643            366799999999888999999999999999999987554322111111111


Q ss_pred             HHHHHHHH-hhh-------hhhhhhcCC-------cc-----CHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          220 TNWVYKCF-INR-------ELNKLVRGT-------EV-----DKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       220 ~~~~~~~~-~~~-------~~~~~~~~~-------~~-----~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ........ ...       ...+.+...       ..     .......+.+++.+||+.||.+|||+.|+++.
T Consensus       381 ~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~h  454 (501)
T PHA03210        381 LKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLAL  454 (501)
T ss_pred             HHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhhC
Confidence            11110000 000       000111000       00     01123467888999999999999999999863

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=2.7e-36  Score=258.64  Aligned_cols=242  Identities=16%  Similarity=0.180  Sum_probs=181.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|.....+|.|++  |.||+|..      .++|....   ......+.+|+.++++++|+||+++++++.+.+..++|
T Consensus         4 ~~~y~~~~~lg~g~~--~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   81 (291)
T cd07844           4 LETYKKLDKLGEGSY--ATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLV   81 (291)
T ss_pred             ccceeEEEEEeecCC--eEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEE
Confidence            356778889999999  99999821      11222211   12234567899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |||++ ++|.+++.. ....+++...+.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+....  
T Consensus        82 ~e~~~-~~L~~~~~~-~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  156 (291)
T cd07844          82 FEYLD-TDLKQYMDD-CGGGLSMHNVRLFLFQLLRGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLARAKSVP  156 (291)
T ss_pred             EecCC-CCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCHHHEEEcCCCCEEECccccccccCCC
Confidence            99998 499999876 345789999999999999999999999   99999999999999999999999999875432  


Q ss_pred             ---------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh---hhhhhh-
Q 048314          170 ---------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN---RELNKL-  235 (274)
Q Consensus       170 ---------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-  235 (274)
                               +..|+|||.+.. ..++.++|+||+|+++|+|++|..||............   .......   ...... 
T Consensus       157 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  233 (291)
T cd07844         157 SKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHK---IFRVLGTPTEETWPGVS  233 (291)
T ss_pred             CccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHH---HHHhcCCCChhhhhhhh
Confidence                     456999998865 45788999999999999999999999644211111110   0000000   000000 


Q ss_pred             ------------hcCCc-----cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 ------------VRGTE-----VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ------------~~~~~-----~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                                  ..+..     ........+.+++.+||+.||++|||+.|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         234 SNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             hccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence                        00000     00111267789999999999999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.6e-36  Score=256.64  Aligned_cols=233  Identities=17%  Similarity=0.214  Sum_probs=183.9

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCCC--------CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPY--------SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~--------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      +|.....+|.|++  |.||++..      .++|......        ..+.+.+|++++++++|+||+++++++.+.+..
T Consensus         1 ~~~~~~~lg~g~~--~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   78 (268)
T cd06630           1 EWLKGQQLGTGAF--SSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHF   78 (268)
T ss_pred             CccccceecCcCc--eEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeE
Confidence            4667889999999  99998721      1111111111        124577899999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEecccccee
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKISDFGLAKL  167 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~d~g~~~~  167 (274)
                      ++|+||+++++|.+++.+  ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++ .++|+|||.+..
T Consensus        79 ~~v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~ql~~al~~LH~~---~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~  153 (268)
T cd06630          79 NLFVEWMAGGSVSHLLSK--YGAFKEAVIINYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDSTGQRLRIADFGAAAR  153 (268)
T ss_pred             EEEEeccCCCcHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEcccccccc
Confidence            999999999999999975  45789999999999999999999999   999999999999998765 599999998754


Q ss_pred             cC---------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          168 LS---------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       168 ~~---------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      ..               +..|+|||.+....++.++|+||+|++++++++|..||..........    ....      .
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~----~~~~------~  223 (268)
T cd06630         154 LAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLA----LIFK------I  223 (268)
T ss_pred             cccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHH----HHHH------H
Confidence            32               346999999888888999999999999999999999996432211111    0000      0


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .........+...+..+.+++.+||..||++|||+.++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         224 ASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             hccCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence            0011112355566788999999999999999999999986

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-36  Score=263.26  Aligned_cols=232  Identities=16%  Similarity=0.117  Sum_probs=184.0

Q ss_pred             hccccccCCCCCCCCcchhHHHHH------HHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMRA------LMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~~------~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|...+.+|.|++  |.||++...      ++|.....     ...+.+..|++++++++|+||+++++.+.+....++|
T Consensus         2 ~y~~~~~ig~g~~--g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   79 (316)
T cd05574           2 HFKKIKLLGKGDV--GRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLV   79 (316)
T ss_pred             ceEEeeeecCCcc--EEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEE
Confidence            5777888999999  999988221      12222111     1234567899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |||+.+++|.+++.......+++.....++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++...   
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~  156 (316)
T cd05574          80 MDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLL---GIVYRDLKPENILLHESGHIMLSDFDLSKQSDVE  156 (316)
T ss_pred             EEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChHHeEEcCCCCEEEeecchhhccccc
Confidence            9999999999999865556799999999999999999999999   9999999999999999999999999987532   


Q ss_pred             -------------------------------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccC
Q 048314          169 -------------------------------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDA  211 (274)
Q Consensus       169 -------------------------------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~  211 (274)
                                                           ++..|+|||++.+..++.++||||||+++|+|++|..||....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~  236 (316)
T cd05574         157 PPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSN  236 (316)
T ss_pred             ccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCc
Confidence                                                 2446999999988888999999999999999999999996431


Q ss_pred             CChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCC----hhhHHh
Q 048314          212 SKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPS----MKCVVM  272 (274)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps----~~evl~  272 (274)
                      ..   ..+..     ......   ..  ......+..+.+++.+||+.||++|||    +.|+++
T Consensus       237 ~~---~~~~~-----~~~~~~---~~--~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         237 RD---ETFSN-----ILKKEV---TF--PGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             hH---HHHHH-----HhcCCc---cC--CCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHc
Confidence            11   11100     000000   00  111125678999999999999999999    888875

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=9.1e-37  Score=260.71  Aligned_cols=243  Identities=17%  Similarity=0.185  Sum_probs=181.0

Q ss_pred             hccccccCCCCCCCCcchhHHHH-------HHHH---HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR-------ALMA---TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~-------~~~~---~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|...+.+|.|++  |.||+|..       +++.   ........+.+.+|+++++.++||||+++++++.+.+..++|+
T Consensus         2 ~y~~~~~lg~g~~--~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   79 (286)
T cd07846           2 KYENLGLVGEGSY--GMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVF   79 (286)
T ss_pred             ceeEeeeeccCCC--eEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEE
Confidence            5667788999999  99999821       1111   1111123455779999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++++|..+...  ...+++..+..++.|++.||+|||+.   +++|+|++|+||+++.++.++++|||++....   
T Consensus        80 e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~  154 (286)
T cd07846          80 EFVDHTVLDDLEKY--PNGLDESRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG  154 (286)
T ss_pred             ecCCccHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCcEEEEeeeeeeeccCCc
Confidence            99999999887764  34589999999999999999999999   99999999999999999999999999876432   


Q ss_pred             --------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH-------Hhhhhh-
Q 048314          170 --------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC-------FINREL-  232 (274)
Q Consensus       170 --------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~-  232 (274)
                              +..|+|||.+.. ..++.++|+||||+++|+|++|..||...........+..+....       ...... 
T Consensus       155 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (286)
T cd07846         155 EVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLF  234 (286)
T ss_pred             cccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHh
Confidence                    346899998865 346789999999999999999999886432111101111100000       000000 


Q ss_pred             hhhhcCC--------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 NKLVRGT--------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 ~~~~~~~--------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .....+.        ......+..+.+++.+||+.||++|||++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         235 AGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             hccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence            0000000        011234577999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=9.7e-37  Score=267.68  Aligned_cols=242  Identities=16%  Similarity=0.165  Sum_probs=178.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeC----
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG----   85 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~----   85 (274)
                      ..++|.....+|.|+|  |.||++..      .++|.....    ...+.+.+|+.++++++||||+++++++...    
T Consensus        13 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07878          13 VPERYQNLTPVGSGAY--GSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIE   90 (343)
T ss_pred             hhhhhhhheecccCCC--eEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccc
Confidence            3467888899999999  99999821      112222111    1234466899999999999999999987543    


Q ss_pred             --CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccc
Q 048314           86 --SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG  163 (274)
Q Consensus        86 --~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g  163 (274)
                        ...++++|++ +++|.+++..   ..+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||
T Consensus        91 ~~~~~~~~~~~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg  163 (343)
T cd07878          91 NFNEVYLVTNLM-GADLNNIVKC---QKLSDEHVQFLIYQLLRGLKYIHSA---GIIHRDLKPSNVAVNEDCELRILDFG  163 (343)
T ss_pred             ccCcEEEEeecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhhEEECCCCCEEEcCCc
Confidence              3468999987 6899988853   5699999999999999999999999   99999999999999999999999999


Q ss_pred             cceec--------CCCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH----------
Q 048314          164 LAKLL--------SDKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY----------  224 (274)
Q Consensus       164 ~~~~~--------~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~----------  224 (274)
                      ++...        ++..|+|||.+.. ..++.++|||||||++|+|++|..||.......   .+.....          
T Consensus       164 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~  240 (343)
T cd07878         164 LARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYID---QLKRIMEVVGTPSPEVL  240 (343)
T ss_pred             cceecCCCcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHH---HHHHHHHHhCCCCHHHH
Confidence            98653        2567999999876 468899999999999999999999996431111   1111000          


Q ss_pred             HHHhhhhhhhhhcCC-ccC--------HHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          225 KCFINRELNKLVRGT-EVD--------KKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ............... ..+        ....+.+.+++.+||+.||++|||+.|+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         241 KKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             HhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            000000000000000 000        1123457899999999999999999999863

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-36  Score=265.51  Aligned_cols=221  Identities=14%  Similarity=0.146  Sum_probs=169.5

Q ss_pred             CCCCCCCCcchhHHHH------HHHH-----HhcCCCCCCcHHHHHHHHhcC---CCCccceEeEEEEeCCcceEEEEeC
Q 048314           30 NDRNSPRSKSVWSCMR------ALMA-----TVNSPYSPSRPLTLTSIVSRV---SWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        30 ~g~g~~~~g~vy~~~~------~~~~-----~~~~~~~~~~~~~e~~~l~~l---~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +|.|+|  |.||++..      .++|     ..........+..|..++.+.   .||||+++++++.+.+..++||||+
T Consensus         1 lG~G~~--g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~   78 (330)
T cd05586           1 IGKGTF--GQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYM   78 (330)
T ss_pred             CCCCCc--eEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCC
Confidence            689999  99998711      1111     111111223345677777665   6999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      ++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++...       
T Consensus        79 ~~g~L~~~l~~--~~~~~~~~~~~~~~qil~al~~LH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~  153 (330)
T cd05586          79 SGGELFWHLQK--EGRFSEDRAKFYIAELVLALEHLHKY---DIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTT  153 (330)
T ss_pred             CCChHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCc
Confidence            99999999875  46799999999999999999999999   9999999999999999999999999987642       


Q ss_pred             ----CCCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC-
Q 048314          169 ----SDKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD-  242 (274)
Q Consensus       169 ----~~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  242 (274)
                          ++..|+|||.+... .++.++|||||||++|+|++|..||.....   ....     .....+.       ...+ 
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~---~~~~-----~~i~~~~-------~~~~~  218 (330)
T cd05586         154 NTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDT---QQMY-----RNIAFGK-------VRFPK  218 (330)
T ss_pred             cCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCH---HHHH-----HHHHcCC-------CCCCC
Confidence                25679999988754 478999999999999999999999964311   1000     0000000       0111 


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCC----ChhhHHh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRP----SMKCVVM  272 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rp----s~~evl~  272 (274)
                      ...+..+.+++.+||+.||.+||    ++.++++
T Consensus       219 ~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~  252 (330)
T cd05586         219 NVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKE  252 (330)
T ss_pred             ccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhc
Confidence            12456788999999999999998    5666654

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=3.7e-36  Score=256.22  Aligned_cols=227  Identities=23%  Similarity=0.219  Sum_probs=179.2

Q ss_pred             CCCCCCCCcchhHHHH------HHHH-----HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCC
Q 048314           30 NDRNSPRSKSVWSCMR------ALMA-----TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPW   98 (274)
Q Consensus        30 ~g~g~~~~g~vy~~~~------~~~~-----~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g   98 (274)
                      +|.|+|  |.||++..      .++|     ........+.+.+|++++++++||||+++++.+...+..++||||++++
T Consensus         1 lg~g~~--g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   78 (277)
T cd05577           1 LGKGGF--GEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGG   78 (277)
T ss_pred             CCCCCc--eeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCC
Confidence            588999  99998721      1111     1122233455678999999999999999999999999999999999999


Q ss_pred             CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---------
Q 048314           99 DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---------  169 (274)
Q Consensus        99 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---------  169 (274)
                      +|.+++.......+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+....         
T Consensus        79 ~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  155 (277)
T cd05577          79 DLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRA  155 (277)
T ss_pred             cHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEccCcchhhhccCCcccccc
Confidence            999999875445799999999999999999999999   99999999999999999999999999876432         


Q ss_pred             -CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHH
Q 048314          170 -DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLEN  248 (274)
Q Consensus       170 -~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (274)
                       +..|++||.+....++.++|+||||+++++|++|+.||...........+.        ....   ..+...+...+..
T Consensus       156 ~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~  224 (277)
T cd05577         156 GTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELK--------RRTL---EMAVEYPDKFSPE  224 (277)
T ss_pred             CCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHH--------hccc---cccccCCccCCHH
Confidence             457999999988888999999999999999999999996442211111110        0000   0111244455778


Q ss_pred             HHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          249 LVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       249 ~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      +.+++.+||+.||++||     ++.++++
T Consensus       225 ~~~li~~~l~~~p~~R~~~~~~~~~~ll~  253 (277)
T cd05577         225 AKDLCEALLQKDPEKRLGCRGGSADEVRE  253 (277)
T ss_pred             HHHHHHHHccCChhHccCCCcccHHHHHh
Confidence            99999999999999999     6666764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=1.2e-36  Score=262.05  Aligned_cols=232  Identities=14%  Similarity=0.150  Sum_probs=184.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcC--CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS--PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .++|...+.+|.|++  |.||++..      .++|....  ....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus        18 ~~~y~~~~~lg~g~~--g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   95 (297)
T cd06656          18 KKKYTRFEKIGQGAS--GTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   95 (297)
T ss_pred             hhhceeeeeeccCCC--eEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEee
Confidence            467788899999999  99998821      11222221  123345678999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      ||+++++|.+++..   ..+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+...    
T Consensus        96 e~~~~~~L~~~~~~---~~~~~~~~~~~~~~l~~~L~~LH~~---~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~  169 (297)
T cd06656          96 EYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ  169 (297)
T ss_pred             cccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEECcCccceEccCCc
Confidence            99999999999964   4689999999999999999999999   9999999999999999999999999987643    


Q ss_pred             -------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          169 -------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       169 -------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             .++.|++||.+....++.++|+||||+++|++++|..||...... ... .     . ......    .....
T Consensus       170 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~-~~~-~-----~-~~~~~~----~~~~~  237 (297)
T cd06656         170 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL-RAL-Y-----L-IATNGT----PELQN  237 (297)
T ss_pred             cCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcc-hhe-e-----e-eccCCC----CCCCC
Confidence                   245799999998888899999999999999999999999643111 000 0     0 000000    00012


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +...+..+.+++.+||+.||++|||++++++
T Consensus       238 ~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         238 PERLSAVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             ccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            3345567899999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=4.1e-36  Score=262.68  Aligned_cols=235  Identities=13%  Similarity=0.034  Sum_probs=178.1

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHH-----HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMA-----TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~-----~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|...+.+|+|+|  |.||++..      .++|     ..........+.+|+.++..++|+||+++++.+.+.+..++|
T Consensus         2 ~y~~~~~lG~G~f--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv   79 (332)
T cd05623           2 DFEILKVIGRGAF--GEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLV   79 (332)
T ss_pred             CceEEEEEEeCCC--eEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEE
Confidence            5677788999999  99998711      1111     111112234477899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee----
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL----  167 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~----  167 (274)
                      |||+++|+|.+++.. ....+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++..    
T Consensus        80 ~ey~~~g~L~~~l~~-~~~~l~~~~~~~~~~qi~~al~~lH~~---~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~  155 (332)
T cd05623          80 MDYYVGGDLLTLLSK-FEDRLPEDMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMED  155 (332)
T ss_pred             EeccCCCcHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEeecchheecccC
Confidence            999999999999976 345689999999999999999999999   999999999999999999999999998753    


Q ss_pred             --------cCCCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          168 --------LSDKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       168 --------~~~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                              .+++.|+|||++.     ...++.++|+|||||++|||++|+.||......   ..    .... .+.. ..
T Consensus       156 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~---~~----~~~i-~~~~-~~  226 (332)
T cd05623         156 GTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLV---ET----YGKI-MNHK-ER  226 (332)
T ss_pred             CcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHH---HH----HHHH-hCCC-cc
Confidence                    2367899999886     345788999999999999999999999643110   00    0010 0000 00


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCC--CCChhhHHhh
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPAL--RPSMKCVVMM  273 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~evl~~  273 (274)
                      .-.+ ......+..+.+++.+|+..++.+  |+++.|+++.
T Consensus       227 ~~~p-~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         227 FQFP-AQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             ccCC-CccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            0000 112245678899999988664444  6899998753

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.2e-36  Score=262.52  Aligned_cols=235  Identities=13%  Similarity=0.024  Sum_probs=177.5

Q ss_pred             hccccccCCCCCCCCcchhHHH------HHHHHHh-----cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM------RALMATV-----NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|...+.+|.|+|  |.||++.      ..++|.+     ......+.+.+|+.++..++|+||+++++++.+.+..++|
T Consensus         2 ~y~~~~~lG~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv   79 (331)
T cd05597           2 DFEILKVIGRGAF--GEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLV   79 (331)
T ss_pred             CceEEEEEEecCC--eEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEE
Confidence            5667788999999  9999871      1111111     1112334577899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |||+++|+|.+++.. ....+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++...   
T Consensus        80 ~e~~~g~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  155 (331)
T cd05597          80 MDYYVGGDLLTLLSK-FEDRLPEDMARFYLAEMVLAIDSVHQL---GYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLAD  155 (331)
T ss_pred             EecCCCCcHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEECCCCHHHEEECCCCCEEEEECCceeecCCC
Confidence            999999999999975 345689999999999999999999999   9999999999999999999999999987542   


Q ss_pred             ---------CCCCcCCCccccc-----CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 ---------SDKGCMAPECYKR-----TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ---------~~~~~~ape~~~~-----~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                               +++.|+|||++..     ..++.++|+|||||++|+|++|+.||.....   .    ...........   
T Consensus       156 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~---~----~~~~~i~~~~~---  225 (331)
T cd05597         156 GTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESL---V----ETYGKIMNHKE---  225 (331)
T ss_pred             CCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCH---H----HHHHHHHcCCC---
Confidence                     3567999999863     3567899999999999999999999964311   0    00001100000   


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCC--CCCChhhHHhh
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPA--LRPSMKCVVMM  273 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~--~Rps~~evl~~  273 (274)
                      ...-.......+..+.+++.+|+..+++  .||++.++++.
T Consensus       226 ~~~~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         226 HFQFPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             cccCCCccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            0000011123467788999998865433  37899998763

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=8.5e-36  Score=252.65  Aligned_cols=234  Identities=18%  Similarity=0.194  Sum_probs=180.7

Q ss_pred             hccccccCCCCCCCCcchhHHHH-------HHHHHhcC------------CCCCCcHHHHHHHHhc-CCCCccceEeEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR-------ALMATVNS------------PYSPSRPLTLTSIVSR-VSWTTDIEVSSVA   82 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~-------~~~~~~~~------------~~~~~~~~~e~~~l~~-l~h~niv~l~~~~   82 (274)
                      +|.....+|.|++  |.||+|..       .++|....            .....++.+|+.++.+ ++||||+++++++
T Consensus         1 ~y~~~~~ig~G~~--~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~   78 (269)
T cd08528           1 EYAVLEHLGSGAF--GCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTF   78 (269)
T ss_pred             CchhhhhhcCCCC--ceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeE
Confidence            3566778999999  99998821       11111110            0112335678888875 7899999999999


Q ss_pred             EeCCcceEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEE
Q 048314           83 MRGSKPSTEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKI  159 (274)
Q Consensus        83 ~~~~~~~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl  159 (274)
                      .+++..+++|||+++++|.+++...  ....+++..++.++.|++.||.|||+ .   +++|+||+|+||+++.++.+++
T Consensus        79 ~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---~i~H~dl~~~nil~~~~~~~~l  155 (269)
T cd08528          79 LENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEK---RIVHRDLTPNNIMLGEDDKVTI  155 (269)
T ss_pred             ccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCC---ceeecCCCHHHEEECCCCcEEE
Confidence            9999999999999999999998542  34568999999999999999999996 5   8999999999999999999999


Q ss_pred             eccccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh
Q 048314          160 SDFGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN  229 (274)
Q Consensus       160 ~d~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                      +|||.+....          +..|++||.+....++.++|+||||+++|+|++|..||......   . ..    ....+
T Consensus       156 ~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~---~-~~----~~~~~  227 (269)
T cd08528         156 TDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNML---S-LA----TKIVE  227 (269)
T ss_pred             ecccceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHH---H-HH----HHHhh
Confidence            9999986433          45699999998888899999999999999999999998633110   0 00    00111


Q ss_pred             hhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          230 RELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...    .+ ......+..+.+++.+||+.||++|||+.|+.++|
T Consensus       228 ~~~----~~-~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~  267 (269)
T cd08528         228 AVY----EP-LPEGMYSEDVTDVITSCLTPDAEARPDIIQVSAMI  267 (269)
T ss_pred             ccC----Cc-CCcccCCHHHHHHHHHHCCCCCccCCCHHHHHHHh
Confidence            111    11 01113457899999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=4.3e-36  Score=257.51  Aligned_cols=243  Identities=16%  Similarity=0.165  Sum_probs=180.6

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++++|...+.+|.|++  |.||+|..      .++|.....   .....+.+|+.++++++|+||+++++++.+++..++
T Consensus         3 ~~~~y~~~~~ig~g~~--~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~l   80 (291)
T cd07870           3 AATSYLNLEKLGEGSY--ATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTF   80 (291)
T ss_pred             ccceeEEEEEEEecCC--EEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEE
Confidence            4577888899999999  99998821      222222211   222356799999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      |+||+. ++|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||+++... 
T Consensus        81 v~e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~  155 (291)
T cd07870          81 VFEYMH-TDLAQYMIQ-HPGGLHPYNVRLFMFQLLRGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLARAKSI  155 (291)
T ss_pred             EEeccc-CCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEEcCCCcEEEeccccccccCC
Confidence            999996 688887765 335688999999999999999999999   99999999999999999999999999876422 


Q ss_pred             ----------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh---hh-----
Q 048314          170 ----------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI---NR-----  230 (274)
Q Consensus       170 ----------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~-----  230 (274)
                                +..|+|||.+... .++.++|+||||+++|+|++|..||....... +. +.. .+....   +.     
T Consensus       156 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~~  232 (291)
T cd07870         156 PSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVF-EQ-LEK-IWTVLGVPTEDTWPGV  232 (291)
T ss_pred             CCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHH-HH-HHH-HHHHcCCCChhhhhhh
Confidence                      4569999988653 57889999999999999999999997442211 10 100 000000   00     


Q ss_pred             -hhh----hhhc---CCc-----cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          231 -ELN----KLVR---GTE-----VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       231 -~~~----~~~~---~~~-----~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       ...    ....   +..     ........+.+++.+|+..||++|||+.|++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         233 SKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             hhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence             000    0000   000     00112467889999999999999999999975

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=2.2e-36  Score=254.87  Aligned_cols=231  Identities=18%  Similarity=0.188  Sum_probs=182.2

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEe--CCcceEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--GSKPSTE   91 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv   91 (274)
                      |...+.+|.|++  |.||++..      .+++....    ....+++.+|+.++++++||||+++++++..  ....+++
T Consensus         2 y~~~~~lg~g~~--~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (265)
T cd08217           2 YEVLETIGKGSF--GTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIV   79 (265)
T ss_pred             ceeeeeeccCCC--eEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEE
Confidence            556678999999  99998821      11222211    1123456789999999999999999998764  4567999


Q ss_pred             EEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHh-----cCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           92 AALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLH-----DECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh-----~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      |||+++++|.+++...  ....+++..++.++.|++.||.|||     +.   +++|+||+|+||+++.++.++++|||.
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~---~i~h~dl~p~nili~~~~~~kl~d~g~  156 (265)
T cd08217          80 MEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGN---TVLHRDLKPANIFLDANNNVKLGDFGL  156 (265)
T ss_pred             ehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccC---cceecCCCHHHEEEecCCCEEEecccc
Confidence            9999999999999753  2456999999999999999999999     77   999999999999999999999999998


Q ss_pred             ceecC-----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          165 AKLLS-----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       165 ~~~~~-----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      +....           +..|++||.+....++.++|+||||+++++|++|..||....    ...+..    ......  
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~----~~~~~~----~~~~~~--  226 (265)
T cd08217         157 AKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN----QLQLAS----KIKEGK--  226 (265)
T ss_pred             cccccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC----HHHHHH----HHhcCC--
Confidence            76532           456999999988888999999999999999999999997442    111111    111111  


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                          ....+...+..+.+++.+||+.+|++|||+.+|++.
T Consensus       227 ----~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         227 ----FRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             ----CCCCccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence                112444566789999999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=1.1e-36  Score=262.40  Aligned_cols=232  Identities=18%  Similarity=0.151  Sum_probs=182.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhc--CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN--SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ...|.....+|.|+|  |.||++..      .++|...  .....+.+.+|+.+++.++||||+++++.+..++..++++
T Consensus        20 ~~~~~~~~~ig~g~~--g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~   97 (297)
T cd06659          20 RSLLENYIKIGEGST--GIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLM   97 (297)
T ss_pred             hhhHHhhhhcCCCCc--eeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEE
Confidence            345566778999999  99998821      1122222  1123445779999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      ||+++++|.+++..   ..+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++...    
T Consensus        98 e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~  171 (297)
T cd06659          98 EFLQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV  171 (297)
T ss_pred             ecCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHeEEccCCcEEEeechhHhhccccc
Confidence            99999999998864   4689999999999999999999999   9999999999999999999999999987532    


Q ss_pred             -------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          169 -------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       169 -------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             ++..|+|||.+....++.++|+||||+++++|++|..||.... +..  .+ .    .........    ...
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~-~~~--~~-~----~~~~~~~~~----~~~  239 (297)
T cd06659         172 PKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDS-PVQ--AM-K----RLRDSPPPK----LKN  239 (297)
T ss_pred             ccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-HHH--HH-H----HHhccCCCC----ccc
Confidence                   2567999999988888999999999999999999999996431 111  01 0    000000000    011


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +...+..+.+++.+||+.+|++|||+.++++
T Consensus       240 ~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~  270 (297)
T cd06659         240 AHKISPVLRDFLERMLTREPQERATAQELLD  270 (297)
T ss_pred             cCCCCHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence            2234567899999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=4.6e-36  Score=257.38  Aligned_cols=228  Identities=16%  Similarity=0.067  Sum_probs=183.3

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|.....+|.|++  |.||++..      .++|.     .......+.+.+|++++++++||||+++++++.+.+..++|
T Consensus         2 ~y~~~~~ig~g~~--~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   79 (290)
T cd05580           2 DFEFIKTLGTGSF--GRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLV   79 (290)
T ss_pred             ceEEEEEeecCCC--eEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEE
Confidence            5666788999999  99998711      11111     11112345577899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |||+++++|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++....  
T Consensus        80 ~e~~~~~~L~~~~~~--~~~l~~~~~~~~~~qil~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~  154 (290)
T cd05580          80 MEYVPGGELFSHLRK--SGRFPEPVARFYAAQVVLALEYLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR  154 (290)
T ss_pred             EecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEeeCCCccccCCC
Confidence            999999999999976  36799999999999999999999999   99999999999999999999999999987542  


Q ss_pred             ------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          170 ------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       170 ------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                            ++.|+|||.+.....+.++|+||||+++|+|++|..||....   .. ...    .....+       ....+.
T Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~-~~~----~~~~~~-------~~~~~~  219 (290)
T cd05580         155 TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDN---PI-QIY----EKILEG-------KVRFPS  219 (290)
T ss_pred             CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC---HH-HHH----HHHhcC-------CccCCc
Confidence                  567999999988888899999999999999999999996442   10 000    000110       112344


Q ss_pred             HHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          244 KNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      ..+..+.+++.+||+.||.+||     +++|+++
T Consensus       220 ~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~  253 (290)
T cd05580         220 FFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKN  253 (290)
T ss_pred             cCCHHHHHHHHHHccCCHHHccCcccCCHHHHHc
Confidence            4567889999999999999999     7777764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.4e-36  Score=258.35  Aligned_cols=234  Identities=16%  Similarity=0.181  Sum_probs=181.8

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      +|...+.+|.|++  |.||++..      .++|.+...   ...+.+.+|+.++++++||||+++++.+...+..++|||
T Consensus         2 ~~~~~~~ig~g~~--g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (286)
T cd06622           2 EIEVLDELGKGNY--GSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCME   79 (286)
T ss_pred             hhhhhhhhcccCC--eEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEe
Confidence            4566778999999  99998821      112222211   113467799999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           94 LDLPWDLAYIIFCSA-ERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |+++++|.+++.... ...+++..+..++.|++.||.|||+ .   +++|+||+|+||+++.++.++++|||.+...   
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  156 (286)
T cd06622          80 YMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEH---NIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVAS  156 (286)
T ss_pred             ecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcC---CEeeCCCCHHHEEECCCCCEEEeecCCcccccCC
Confidence            999999999987531 2368999999999999999999996 5   8999999999999999999999999988643   


Q ss_pred             ------CCCCcCCCcccccC------CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          169 ------SDKGCMAPECYKRT------PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       169 ------~~~~~~ape~~~~~------~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                            ++..|+|||.+...      .++.++|+|||||++|+|++|..||.......    ....... ....      
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~----~~~~~~~-~~~~------  225 (286)
T cd06622         157 LAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYAN----IFAQLSA-IVDG------  225 (286)
T ss_pred             ccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhh----HHHHHHH-Hhhc------
Confidence                  24579999988543      34789999999999999999999996431110    0000000 0000      


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+...+...+.++.+++.+||+.+|++||++.++++
T Consensus       226 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  261 (286)
T cd06622         226 DPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLE  261 (286)
T ss_pred             CCCCCCcccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence            111244457788999999999999999999999986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-36  Score=254.48  Aligned_cols=243  Identities=16%  Similarity=0.160  Sum_probs=186.5

Q ss_pred             HhhhccccccCCCCCCCCcchhHH-------HHHHHHHh---cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEe-----
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSC-------MRALMATV---NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR-----   84 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~---~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-----   84 (274)
                      ..+.|...+.+|+|.+  |.|.++       .+++||..   .+....++..+|++.|+.++|+||+.+.+.+..     
T Consensus        20 i~~~y~~~~~iG~GAy--GvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~   97 (359)
T KOG0660|consen   20 IPRYYVLIEPIGRGAY--GVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDK   97 (359)
T ss_pred             ccceecccccccCcce--eeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccc
Confidence            3445555788999999  988876       45555543   333445677899999999999999999999865     


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      -...|+|+|+| +-+|...++.  ++.|+......+.-|++.||.|+|+.   +++||||||.|+++..+..+|++|||+
T Consensus        98 f~DvYiV~elM-etDL~~iik~--~~~L~d~H~q~f~YQiLrgLKyiHSA---nViHRDLKPsNll~n~~c~lKI~DFGL  171 (359)
T KOG0660|consen   98 FNDVYLVFELM-ETDLHQIIKS--QQDLTDDHAQYFLYQILRGLKYIHSA---NVIHRDLKPSNLLLNADCDLKICDFGL  171 (359)
T ss_pred             cceeEEehhHH-hhHHHHHHHc--CccccHHHHHHHHHHHHHhcchhhcc---cccccccchhheeeccCCCEEeccccc
Confidence            34679999999 4689999985  45599999999999999999999999   999999999999999999999999999


Q ss_pred             ceecC-------------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHH--------H
Q 048314          165 AKLLS-------------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN--------W  222 (274)
Q Consensus       165 ~~~~~-------------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~--------~  222 (274)
                      ++...             |.-|.|||++.. ..|+...||||.||++.||++|++.|...+.- ....+.-        .
T Consensus       172 AR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v-~Ql~lI~~~lGtP~~e  250 (359)
T KOG0660|consen  172 ARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYV-HQLQLILELLGTPSEE  250 (359)
T ss_pred             eeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchH-HHHHHHHHhcCCCCHH
Confidence            98773             445899998765 57999999999999999999999999653211 1111100        0


Q ss_pred             HHHHHhhhhhhhhhcCC----------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          223 VYKCFINRELNKLVRGT----------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....+.+....+++..-          .+| ...+...+|+.+||..||.+|+|++|.++
T Consensus       251 ~l~~i~s~~ar~yi~slp~~p~~~f~~~fp-~a~p~AidLlekmL~fdP~kRita~eAL~  309 (359)
T KOG0660|consen  251 DLQKIRSEKARPYIKSLPQIPKQPFSSIFP-NANPLAIDLLEKMLVFDPKKRITAEEALA  309 (359)
T ss_pred             HHHHhccHHHHHHHHhCCCCCCCCHHHHcC-CCCHHHHHHHHHHhccCccccCCHHHHhc
Confidence            01111222222222211          122 44577899999999999999999999886

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=3.7e-36  Score=252.82  Aligned_cols=229  Identities=20%  Similarity=0.183  Sum_probs=181.7

Q ss_pred             ccccccCCCCCCCCcchhHHHHH------HHHHhcCC-------CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMRA------LMATVNSP-------YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~~------~~~~~~~~-------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      |.....+|.|++  |.||+|...      ++|.....       +..+.+.+|+.++++++|+||+++++++.+....++
T Consensus         2 ~~~~~~ig~g~~--~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l   79 (258)
T cd06632           2 WRKGELLGSGSF--GSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYI   79 (258)
T ss_pred             ccccceeeecCC--ceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEE
Confidence            455678999999  999998321      12221111       123457789999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ++||+++++|.+++..  ...+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.+||+|||.+.... 
T Consensus        80 v~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~  154 (258)
T cd06632          80 FLELVPGGSLAKLLKK--YGSFPEPVIRLYTRQILLGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVVE  154 (258)
T ss_pred             EEEecCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccceeccc
Confidence            9999999999999975  34689999999999999999999999   99999999999999999999999999876432 


Q ss_pred             ---------CCCcCCCcccccCC-CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 ---------DKGCMAPECYKRTP-ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~-~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               +..|++||.+.... ++.++|+||||+++|++++|..||....   .....    ....      ......
T Consensus       155 ~~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~---~~~~~----~~~~------~~~~~~  221 (258)
T cd06632         155 FSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE---GVAAV----FKIG------RSKELP  221 (258)
T ss_pred             cccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc---HHHHH----HHHH------hcccCC
Confidence                     45699999887665 8899999999999999999999996431   11000    0000      000011


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+......+.+++.+||+.+|.+|||+.+++.
T Consensus       222 ~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         222 PIPDHLSDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             CcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence            233445678899999999999999999999986

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=1.4e-35  Score=256.45  Aligned_cols=232  Identities=20%  Similarity=0.169  Sum_probs=180.8

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ..|...+.+|.|.+  |.||+|..      .++|.....     ...+++.+|+.+++.++||||++++++|.+.+..++
T Consensus        15 ~~y~~~~~lg~g~~--g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~l   92 (307)
T cd06607          15 KLFTDLREIGHGSF--GAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWL   92 (307)
T ss_pred             hhhhhheeecCCCC--eEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEE
Confidence            45777889999999  99998821      112222111     112356789999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      |+||+. |++.+++.. ....+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++.... 
T Consensus        93 v~e~~~-g~l~~~~~~-~~~~l~~~~~~~~~~ql~~~L~~LH~~---~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~  167 (307)
T cd06607          93 VMEYCL-GSASDILEV-HKKPLQEVEIAAICHGALQGLAYLHSH---ERIHRDIKAGNILLTEPGTVKLADFGSASLVSP  167 (307)
T ss_pred             EHHhhC-CCHHHHHHH-cccCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEECCCCCEEEeecCcceecCC
Confidence            999997 688888765 335699999999999999999999999   99999999999999999999999999886543 


Q ss_pred             ------CCCcCCCcccc---cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 ------DKGCMAPECYK---RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 ------~~~~~ape~~~---~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                            +..|+|||.+.   ...++.++||||||+++|+|++|..||......    ..   .... ...     ..+..
T Consensus       168 ~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~----~~---~~~~-~~~-----~~~~~  234 (307)
T cd06607         168 ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM----SA---LYHI-AQN-----DSPTL  234 (307)
T ss_pred             CCCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHH----HH---HHHH-hcC-----CCCCC
Confidence                  56799999874   346788999999999999999999998643110    00   0000 000     00111


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .+...+..+.+++.+||+.||++|||+.+++..
T Consensus       235 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         235 SSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             CchhhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            233456789999999999999999999999863

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=5.4e-36  Score=254.27  Aligned_cols=231  Identities=19%  Similarity=0.249  Sum_probs=176.7

Q ss_pred             cccccCCCCCCCCcchhHHHH---------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC-----
Q 048314           25 CRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS-----   86 (274)
Q Consensus        25 ~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----   86 (274)
                      ...+.+|+|++  |.||+|..         .++|.....    ...+++.+|++++++++||||+++++++....     
T Consensus         2 ~~~~~ig~g~~--g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   79 (273)
T cd05074           2 TLGRMLGKGEF--GSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRL   79 (273)
T ss_pred             cchhcccCCCC--CCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcc
Confidence            44578999999  99998832         122222211    12345778999999999999999999886532     


Q ss_pred             -cceEEEEeCCCCCHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 048314           87 -KPSTEAALDLPWDLAYIIFCSA----ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD  161 (274)
Q Consensus        87 -~~~lv~e~~~~gsL~~~l~~~~----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  161 (274)
                       ..++++||+.+|+|.+++....    ...+++.....++.|++.||+|||+.   +++|+||||+||+++.++.++++|
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~nili~~~~~~kl~d  156 (273)
T cd05074          80 PIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVAD  156 (273)
T ss_pred             cceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccchhhEEEcCCCCEEECc
Confidence             3478999999999999885321    12479999999999999999999999   999999999999999999999999


Q ss_pred             cccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHH
Q 048314          162 FGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCF  227 (274)
Q Consensus       162 ~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~  227 (274)
                      ||.+....             ...|++||.+....++.++|+||||+++|+|++ |..||....    ...+..+.    
T Consensus       157 fg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~----~~~~~~~~----  228 (273)
T cd05074         157 FGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVE----NSEIYNYL----  228 (273)
T ss_pred             ccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCC----HHHHHHHH----
Confidence            99986542             246899999988888999999999999999998 788875331    11111111    


Q ss_pred             hhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          228 INRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ....      ....+...+..+.+++.+||+.+|++|||+.++++.|
T Consensus       229 ~~~~------~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l  269 (273)
T cd05074         229 IKGN------RLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQL  269 (273)
T ss_pred             HcCC------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            0100      0012234557899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=287.78  Aligned_cols=234  Identities=18%  Similarity=0.157  Sum_probs=192.0

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHH------HHHHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSC------MRALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      ++..+-+++...+||.|.|  |.||.+      ..+++|.+.    .....+...+|++++..++|||+|+.+|+-.+.+
T Consensus      1230 lsnV~~rWqrg~~Ig~G~f--G~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRe 1307 (1509)
T KOG4645|consen 1230 LSNVTFRWQRGNFIGGGTF--GKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHRE 1307 (1509)
T ss_pred             hccceeeeccccccCCcce--eeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHH
Confidence            3455667888999999999  999988      333333222    2244555679999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..+|-||||.+|+|.+.+..  .+..++.....+..|++.|+.|||++   ||+|||+||.||+++.+|.+|++|||.+.
T Consensus      1308 kv~IFMEyC~~GsLa~ll~~--gri~dE~vt~vyt~qll~gla~LH~~---gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ 1382 (1509)
T KOG4645|consen 1308 KVYIFMEYCEGGSLASLLEH--GRIEDEMVTRVYTKQLLEGLAYLHEH---GIVHRDIKPANILLDFNGLIKYGDFGSAV 1382 (1509)
T ss_pred             HHHHHHHHhccCcHHHHHHh--cchhhhhHHHHHHHHHHHHHHHHHhc---CceecCCCccceeeecCCcEEeeccccee
Confidence            99999999999999999985  45578888888999999999999999   99999999999999999999999999986


Q ss_pred             ec---------------CCCCcCCCcccccC---CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh
Q 048314          167 LL---------------SDKGCMAPECYKRT---PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI  228 (274)
Q Consensus       167 ~~---------------~~~~~~ape~~~~~---~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~  228 (274)
                      .+               +|+.|||||++.+.   .....+||||+||+++||+||+.||...+.+.      ..      
T Consensus      1383 ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~------aI------ 1450 (1509)
T KOG4645|consen 1383 KIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEW------AI------ 1450 (1509)
T ss_pred             EecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchh------HH------
Confidence            53               37889999999764   35678999999999999999999996442211      00      


Q ss_pred             hhhhhhhhcC--CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          229 NRELNKLVRG--TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       229 ~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         +.+..-+  ..+|...+.+-.+++..||+.||++|=++.|+++
T Consensus      1451 ---My~V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1451 ---MYHVAAGHKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred             ---HhHHhccCCCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence               1111111  1467778888999999999999999999999886

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=1.2e-35  Score=258.00  Aligned_cols=231  Identities=19%  Similarity=0.168  Sum_probs=179.8

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .|...+.+|.|+|  |.||++..      .+++.....     .....+.+|++++++++|||++++++++.++...++|
T Consensus        26 ~f~~~~~lg~G~~--~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  103 (317)
T cd06635          26 LFTDLREIGHGSF--GAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLV  103 (317)
T ss_pred             hhhhhheeccCCC--eEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEE
Confidence            4777888999999  99998821      112222211     1123467899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |||+. |+|.+.+.. ....+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.++++|||++....  
T Consensus       104 ~e~~~-g~l~~~~~~-~~~~l~~~~~~~i~~~i~~~l~~lH~~---~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~  178 (317)
T cd06635         104 MEYCL-GSASDLLEV-HKKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIASPA  178 (317)
T ss_pred             EeCCC-CCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcccEEECCCCCEEEecCCCccccCCc
Confidence            99997 588888765 345699999999999999999999999   99999999999999999999999999876443  


Q ss_pred             -----CCCcCCCcccc---cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 -----DKGCMAPECYK---RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 -----~~~~~ape~~~---~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                           +..|+|||.+.   ...++.++|+||||+++|+|++|..||.....   ......    . ....     .+...
T Consensus       179 ~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~---~~~~~~----~-~~~~-----~~~~~  245 (317)
T cd06635         179 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA---MSALYH----I-AQNE-----SPTLQ  245 (317)
T ss_pred             ccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccH---HHHHHH----H-Hhcc-----CCCCC
Confidence                 45799999874   34678899999999999999999999864311   000100    0 0000     01112


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      +...+..+.+++.+||+.+|.+|||+.++++.
T Consensus       246 ~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~  277 (317)
T cd06635         246 SNEWSDYFRNFVDSCLQKIPQDRPTSEELLKH  277 (317)
T ss_pred             CccccHHHHHHHHHHccCCcccCcCHHHHHhC
Confidence            33456679999999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-36  Score=260.34  Aligned_cols=227  Identities=16%  Similarity=0.192  Sum_probs=185.4

Q ss_pred             ccccccCCCCCCCCcchhHH------HHHHHHHhcC-C---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSC------MRALMATVNS-P---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~-~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      |.-+.-+|+|.|  ..|-.+      .++++|.+.+ +   -+...+.+|++.|+-++|||||+||.+......+|||+|
T Consensus        20 YDLekTlG~GHF--AVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLE   97 (864)
T KOG4717|consen   20 YDLEKTLGRGHF--AVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILE   97 (864)
T ss_pred             ehhhhhhcCCce--ehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEE
Confidence            444667999999  544333      3333333222 2   234556799999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE-cCCCcEEEeccccceecC---
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM-DEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~-~~~~~~kl~d~g~~~~~~---  169 (274)
                      +=.+|+|.||+-. .+.++.+....+++.||+.|+.|+|+.   .++||||||+|+++ ..-|-+||.|||++....   
T Consensus        98 LGD~GDl~DyImK-He~Gl~E~La~kYF~QI~~AI~YCHqL---HVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~  173 (864)
T KOG4717|consen   98 LGDGGDLFDYIMK-HEEGLNEDLAKKYFAQIVHAISYCHQL---HVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGK  173 (864)
T ss_pred             ecCCchHHHHHHh-hhccccHHHHHHHHHHHHHHHHHHhhh---hhhcccCCcceeEEeeecCceEeeeccccccCCCcc
Confidence            9999999999987 567899999999999999999999999   99999999999976 466889999999986432   


Q ss_pred             -------CCCcCCCcccccCCCc-cccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-c
Q 048314          170 -------DKGCMAPECYKRTPIS-VKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-E  240 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~-~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  240 (274)
                             ...|-|||++.+..|+ +.+||||+||+||-|++|+.||+....                .+.+..++|=. .
T Consensus       174 kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeAND----------------SETLTmImDCKYt  237 (864)
T KOG4717|consen  174 KLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEAND----------------SETLTMIMDCKYT  237 (864)
T ss_pred             hhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccc----------------hhhhhhhhccccc
Confidence                   4569999999998886 789999999999999999999974421                12222333333 5


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .|...+.++.+||..||..||.+|.|.+||..
T Consensus       238 vPshvS~eCrdLI~sMLvRdPkkRAslEeI~s  269 (864)
T KOG4717|consen  238 VPSHVSKECRDLIQSMLVRDPKKRASLEEIVS  269 (864)
T ss_pred             CchhhhHHHHHHHHHHHhcCchhhccHHHHhc
Confidence            78888999999999999999999999999864

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=1.7e-35  Score=251.14  Aligned_cols=234  Identities=18%  Similarity=0.167  Sum_probs=180.0

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CC--------CCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YS--------PSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~--------~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      |.....+|.|++  |.||+|..      .++|.....    ..        .+.+.+|+.++++++|||++++++++...
T Consensus         3 ~~~~~~lg~g~~--~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   80 (272)
T cd06629           3 WVKGELIGKGTY--GRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTE   80 (272)
T ss_pred             eeecceecccCc--eEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccC
Confidence            344678999999  99999821      122221110    00        12456899999999999999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      +..++||||+++++|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~~~nil~~~~~~~~l~d~~~~  155 (272)
T cd06629          81 EYLSIFLEYVPGGSIGSCLRT--YGRFEEQLVRFFTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFGIS  155 (272)
T ss_pred             CceEEEEecCCCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHhhC---CeeecCCChhhEEEcCCCeEEEeecccc
Confidence            999999999999999999976  35789999999999999999999999   9999999999999999999999999988


Q ss_pred             eecC-------------CCCcCCCcccccCC--CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh
Q 048314          166 KLLS-------------DKGCMAPECYKRTP--ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR  230 (274)
Q Consensus       166 ~~~~-------------~~~~~ape~~~~~~--~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      ....             +..|+|||.+....  ++.++|+||||++++++++|..||.....   .....    .. ...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~---~~~~~----~~-~~~  227 (272)
T cd06629         156 KKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEA---IAAMF----KL-GNK  227 (272)
T ss_pred             ccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcch---HHHHH----Hh-hcc
Confidence            6432             34699999887654  78899999999999999999999853211   00000    00 000


Q ss_pred             hhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          231 ELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .....+ +.......+..+.+++..||+.+|++|||+++|++.
T Consensus       228 ~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         228 RSAPPI-PPDVSMNLSPVALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             ccCCcC-CccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence            000111 111222446789999999999999999999999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=3.2e-36  Score=254.49  Aligned_cols=235  Identities=20%  Similarity=0.215  Sum_probs=184.7

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      +|.....+|.|++  |.||++..      .++|.....   ...+++.+|++++++++||||+++++.+...+..++++|
T Consensus         2 ~~~~~~~ig~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (265)
T cd06605           2 DLEYLGELGAGNS--GVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICME   79 (265)
T ss_pred             cchHHHHhcCCCC--eEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEE
Confidence            4556678999999  99999822      122222211   223457899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      |+++++|.+++... ...+++..+..++.|++.|+.|||+ .   +++|+||+|+||+++.++.++|+|||.+...    
T Consensus        80 ~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lH~~~---~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~  155 (265)
T cd06605          80 YMDGGSLDKILKEV-QGRIPERILGKIAVAVLKGLTYLHEKH---KIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSL  155 (265)
T ss_pred             ecCCCcHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHcCCC---CeecCCCCHHHEEECCCCCEEEeecccchhhHHHH
Confidence            99999999999863 2678999999999999999999999 8   9999999999999999999999999987543    


Q ss_pred             -----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          169 -----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       169 -----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                           .+..|++||.+....++.++|+||||++++++++|..||.........  ......... ..      .....+.
T Consensus       156 ~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~--~~~~~~~~~-~~------~~~~~~~  226 (265)
T cd06605         156 AKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDG--IFELLQYIV-NE------PPPRLPS  226 (265)
T ss_pred             hhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccccccc--HHHHHHHHh-cC------CCCCCCh
Confidence                 356799999998888999999999999999999999999644211111  111111100 00      0011222


Q ss_pred             H-HHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          244 K-NLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       244 ~-~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      . .+..+.++|..||..||++|||+.+++.
T Consensus       227 ~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  256 (265)
T cd06605         227 GKFSPDFQDFVNLCLIKDPRERPSYKELLE  256 (265)
T ss_pred             hhcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence            2 5677999999999999999999999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=1.8e-36  Score=260.42  Aligned_cols=231  Identities=17%  Similarity=0.156  Sum_probs=181.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      +.+.....+|.|+|  |.||++..      .++|.....  ...+.+.+|+.++++++|+||+++++.+...+..++|||
T Consensus        22 ~~~~~~~~lg~g~~--g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e   99 (292)
T cd06658          22 EYLDSFIKIGEGST--GIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVME   99 (292)
T ss_pred             HHHhhhhcccCCCC--eEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEe
Confidence            34444567999999  99998721      112222111  223457799999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-----  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-----  168 (274)
                      |+++++|.+++..   +.+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++...     
T Consensus       100 ~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~  173 (292)
T cd06658         100 FLEGGALTDIVTH---TRMNEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP  173 (292)
T ss_pred             CCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEccCcchhhcccccc
Confidence            9999999999854   4689999999999999999999999   9999999999999999999999999987532     


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-cc
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-EV  241 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  241 (274)
                            ++..|+|||.+....++.++|+||||+++||+++|..||.....   ...+.     .     ......+. ..
T Consensus       174 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~---~~~~~-----~-----~~~~~~~~~~~  240 (292)
T cd06658         174 KRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPP---LQAMR-----R-----IRDNLPPRVKD  240 (292)
T ss_pred             cCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH---HHHHH-----H-----HHhcCCCcccc
Confidence                  24579999999888889999999999999999999999964311   00000     0     00111111 11


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ....+..+.+++.+||..||++|||+.++++.
T Consensus       241 ~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         241 SHKVSSVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             ccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            22345678899999999999999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=9.5e-36  Score=260.30  Aligned_cols=235  Identities=12%  Similarity=0.037  Sum_probs=177.8

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.+|+|+|  |.||++..      .++|..     ........+.+|+.++..++|+||+++++++.+.+..++
T Consensus         1 d~y~i~~~lG~G~f--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~l   78 (331)
T cd05624           1 DDFEIIKVIGRGAF--GEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYL   78 (331)
T ss_pred             CCceEEEEEeeCCC--eEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEE
Confidence            35777889999999  99998811      111111     111223446789999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      ||||+++|+|.+++.. ....+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...  
T Consensus        79 v~Ey~~gg~L~~~l~~-~~~~l~~~~~~~~~~qi~~~L~~lH~~---~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~  154 (331)
T cd05624          79 VMDYYVGGDLLTLLSK-FEDRLPEDMARFYIAEMVLAIHSIHQL---HYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQ  154 (331)
T ss_pred             EEeCCCCCcHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCchHHEEEcCCCCEEEEeccceeeccC
Confidence            9999999999999976 345789999999999999999999999   9999999999999999999999999987532  


Q ss_pred             ----------CCCCcCCCccccc-----CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          169 ----------SDKGCMAPECYKR-----TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       169 ----------~~~~~~ape~~~~-----~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                                +++.|+|||++..     ..++.++|+||||+++|+|++|+.||.....   .....    .. ..... 
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~---~~~~~----~i-~~~~~-  225 (331)
T cd05624         155 DGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESL---VETYG----KI-MNHEE-  225 (331)
T ss_pred             CCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCH---HHHHH----HH-HcCCC-
Confidence                      3667999998865     4578899999999999999999999964311   00000    00 00000 


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCC--CCChhhHHh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPAL--RPSMKCVVM  272 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~evl~  272 (274)
                      . ..-.......++.+.+++.+|+..++.+  |++++++++
T Consensus       226 ~-~~~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~  265 (331)
T cd05624         226 R-FQFPSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKK  265 (331)
T ss_pred             c-ccCCCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhc
Confidence            0 0000011234578899999999876544  468888765

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=7.5e-36  Score=255.39  Aligned_cols=238  Identities=18%  Similarity=0.169  Sum_probs=188.2

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHHHH------HHHHhcCC-CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCMRA------LMATVNSP-YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~~~------~~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ...+++|.....+|.|++  |.||+|...      ++|..... ...+.+.+|+.++++++|+|++++++.+...+..++
T Consensus        15 ~~~~~~~~~~~~l~~g~~--~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l   92 (286)
T cd06614          15 GDPRELYKNLEKIGEGAS--GEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWV   92 (286)
T ss_pred             CCccccchHhHhccCCCC--eEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEE
Confidence            345667777889999999  999998322      12222211 124567899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      ++||+++++|.+++.... ..+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.++++|||.+...  
T Consensus        93 v~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~---gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~  168 (286)
T cd06614          93 VMEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQLTK  168 (286)
T ss_pred             EEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCChhhEEEcCCCCEEECccchhhhhcc
Confidence            999999999999998732 4799999999999999999999999   9999999999999999999999999986532  


Q ss_pred             ---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               .+..|++||.+....++.++|+||||+++|+|++|..||.....   ......     ......    ...
T Consensus       169 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~---~~~~~~-----~~~~~~----~~~  236 (286)
T cd06614         169 EKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPP---LRALFL-----ITTKGI----PPL  236 (286)
T ss_pred             chhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCH---HHHHHH-----HHhcCC----CCC
Confidence                     24569999999888889999999999999999999999863311   110000     000000    111


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ..+...+..+.+++.+||+.+|.+|||+.++++.
T Consensus       237 ~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~  270 (286)
T cd06614         237 KNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQH  270 (286)
T ss_pred             cchhhCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence            1222356789999999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=9.6e-36  Score=251.51  Aligned_cols=237  Identities=20%  Similarity=0.210  Sum_probs=184.5

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ++|...+.+|.|++  |.||+|..      .++|.....   ...+.+.+|+.+++.++|+||+++++.+......++++
T Consensus         1 ~~y~~~~~lg~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~   78 (267)
T cd06610           1 DDYELIEVIGVGAT--AVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVM   78 (267)
T ss_pred             CcceeeeeecCCCC--eEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEE
Confidence            35677788999999  99998831      112222211   23355779999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           93 ALDLPWDLAYIIFCSAE-RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |++++++|.+++..... ..+++.....++.|++.|+.|||+.   +++|+||+|+||++++++.++|+|||++....  
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~---~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~  155 (267)
T cd06610          79 PYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN---GQIHRDIKAGNILLGEDGSVKIADFGVSASLADG  155 (267)
T ss_pred             eccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccchHHHhccC
Confidence            99999999999986333 5689999999999999999999999   99999999999999999999999999875322  


Q ss_pred             -------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          170 -------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       170 -------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                                   +..|++||.+... .++.++|+||||+++++|++|..||......   ..+....    .. . ...
T Consensus       156 ~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~---~~~~~~~----~~-~-~~~  226 (267)
T cd06610         156 GDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPM---KVLMLTL----QN-D-PPS  226 (267)
T ss_pred             ccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChh---hhHHHHh----cC-C-CCC
Confidence                         4469999998776 6889999999999999999999999643111   1111100    00 0 000


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..........+..+.+++.+||+.||++|||+.+|++
T Consensus       227 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         227 LETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             cCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            1110111245678899999999999999999999986

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=1.4e-35  Score=250.92  Aligned_cols=231  Identities=18%  Similarity=0.134  Sum_probs=179.6

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcC-C--C----CCCcHHHHHHHHhcCCCCccceEeEEEEeC--C
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS-P--Y----SPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--S   86 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~-~--~----~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~   86 (274)
                      .+|...+.+|.|++  |.||.+..      .++|.... .  .    ..+.+.+|+.++++++||||+++++++.+.  .
T Consensus         2 ~~~~~~~~l~~g~~--g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   79 (265)
T cd06652           2 TNWRLGKLLGQGAF--GRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMER   79 (265)
T ss_pred             CcceEeeEEecCCc--eEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCc
Confidence            46777899999999  99998821      11222211 1  1    123466899999999999999999988663  4


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      .++++|||+++++|.+++..  ...+++.....++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+.
T Consensus        80 ~~~~v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~Dfg~~~  154 (265)
T cd06652          80 TLSIFMEHMPGGSIKDQLKS--YGALTENVTRKYTRQILEGVSYLHSN---MIVHRDIKGANILRDSVGNVKLGDFGASK  154 (265)
T ss_pred             eEEEEEEecCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEecCCCCEEECcCcccc
Confidence            67899999999999999975  34689999999999999999999999   99999999999999999999999999876


Q ss_pred             ec--------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          167 LL--------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       167 ~~--------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      ..              ++..|+|||.+....++.++|+||||+++|++++|+.||....   ......    ..     .
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~---~~~~~~----~~-----~  222 (265)
T cd06652         155 RLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFE---AMAAIF----KI-----A  222 (265)
T ss_pred             ccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccc---hHHHHH----HH-----h
Confidence            32              2446999999988888999999999999999999999996331   000000    00     0


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .... ....+......+.+++.+||. +|++|||++||++.
T Consensus       223 ~~~~-~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~  261 (265)
T cd06652         223 TQPT-NPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLRH  261 (265)
T ss_pred             cCCC-CCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhcC
Confidence            0000 112455566788899999995 89999999999863

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=2.2e-35  Score=253.36  Aligned_cols=243  Identities=17%  Similarity=0.166  Sum_probs=180.2

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeC--Ccce
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--SKPS   89 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~   89 (274)
                      ++|...+.+|.|++  |.||+|..      .++|.....    .....+.+|+.++++++||||+++++++...  +..+
T Consensus         5 ~~y~~~~~lg~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (293)
T cd07843           5 DEYEKLNRIEEGTY--GVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIY   82 (293)
T ss_pred             hhhhhhhhhcCCCC--eEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEE
Confidence            56777889999999  99999821      112222211    1122456899999999999999999998877  8899


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +|+||+. ++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+....
T Consensus        83 lv~e~~~-~~L~~~~~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~  157 (293)
T cd07843          83 MVMEYVE-HDLKSLMET-MKQPFLQSEVKCLMLQLLSGVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGLAREYG  157 (293)
T ss_pred             EEehhcC-cCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCcEEEeecCceeecc
Confidence            9999997 599999876 334699999999999999999999999   99999999999999999999999999887543


Q ss_pred             -----------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH-------HHHHhh-
Q 048314          170 -----------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV-------YKCFIN-  229 (274)
Q Consensus       170 -----------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~-------~~~~~~-  229 (274)
                                 +..|+|||.+... .++.++|+||+|+++++|++|..||...........+....       +..... 
T Consensus       158 ~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (293)
T cd07843         158 SPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSEL  237 (293)
T ss_pred             CCccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhcc
Confidence                       3459999988654 46889999999999999999999996432111111110000       000000 


Q ss_pred             -----hhh----hhhhcCCccCHH-HHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          230 -----REL----NKLVRGTEVDKK-NLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       230 -----~~~----~~~~~~~~~~~~-~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                           ...    ...++. ..+.. .+..+.+++.+||+.||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         238 PGAKKKTFTKYPYNQLRK-KFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             chhcccccccccchhhhc-cccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence                 000    000000 12222 4677899999999999999999999986

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=1.7e-35  Score=252.11  Aligned_cols=229  Identities=19%  Similarity=0.175  Sum_probs=181.8

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      -|...+.+|.|+|  |.||+|..      .++|.....   ...+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus         5 ~~~~~~~ig~G~~--~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   82 (277)
T cd06641           5 LFTKLEKIGKGSF--GEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME   82 (277)
T ss_pred             hhhhheeEeecCC--eEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEE
Confidence            4556677999999  99998821      112221111   122456789999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++++|.+++..   ..+++..+..++.|++.|+.+||+.   +++|+|++|.||+++.++.++++|||++....    
T Consensus        83 ~~~~~~l~~~i~~---~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06641          83 YLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI  156 (277)
T ss_pred             eCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHccC---CeecCCCCHHhEEECCCCCEEEeecccceecccchh
Confidence            9999999999864   4689999999999999999999999   99999999999999999999999999875432    


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                             +..|++||.+.....+.++|+||||+++++|++|..||.....   . ....   . .....      ....+
T Consensus       157 ~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~---~-~~~~---~-~~~~~------~~~~~  222 (277)
T cd06641         157 KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHP---M-KVLF---L-IPKNN------PPTLE  222 (277)
T ss_pred             hhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccch---H-HHHH---H-HhcCC------CCCCC
Confidence                   4568999999887888999999999999999999999863310   0 0000   0 00000      11233


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ...+..+.+++.+||+.+|++||++.++++.
T Consensus       223 ~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         223 GNYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             cccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            4456778999999999999999999999863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=1.1e-35  Score=250.85  Aligned_cols=234  Identities=20%  Similarity=0.194  Sum_probs=187.3

Q ss_pred             hhccccccCCCCCCCCcchhHHHHH------HHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMRA------LMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~~------~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ++|.....+|.|++  |.||++...      +++.....   ...+.+.+|+.++++++|+||+++++++...+..++|+
T Consensus         1 ~~~~~~~~i~~g~~--~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   78 (264)
T cd06623           1 SDLERVKVLGQGSS--GVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVL   78 (264)
T ss_pred             CcceeeeeeeecCC--eEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEE
Confidence            35777889999999  999988221      12222221   12456789999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      ||+++++|.+++..  ...+++..++.++.|++.|+.|||+ .   +++|+|++|+||+++.++.++|+|||.+....  
T Consensus        79 e~~~~~~L~~~l~~--~~~l~~~~~~~~~~~l~~~l~~lh~~~---~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~  153 (264)
T cd06623          79 EYMDGGSLADLLKK--VGKIPEPVLAYIARQILKGLDYLHTKR---HIIHRDIKPSNLLINSKGEVKIADFGISKVLENT  153 (264)
T ss_pred             EecCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHhccC---CCccCCCCHHHEEECCCCCEEEccCccceecccC
Confidence            99999999999986  3679999999999999999999999 8   99999999999999999999999999887543  


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                               +..|+|||.+....++.++|+||||+++|+|++|..||...... ....+.....    ..      ....
T Consensus       154 ~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~-~~~~~~~~~~----~~------~~~~  222 (264)
T cd06623         154 LDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQP-SFFELMQAIC----DG------PPPS  222 (264)
T ss_pred             CCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccccc-CHHHHHHHHh----cC------CCCC
Confidence                     35699999998888899999999999999999999999654210 1111111110    00      0011


Q ss_pred             cCHH-HHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          241 VDKK-NLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       241 ~~~~-~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .+.. .+..+.+++.+||+.+|++|||+.++++.
T Consensus       223 ~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         223 LPAEEFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             CCcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            2333 56789999999999999999999999863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-35  Score=252.73  Aligned_cols=228  Identities=18%  Similarity=0.171  Sum_probs=179.2

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCC---CCccceEeEEEEeCCcceE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVS---WTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~l   90 (274)
                      .|+....+|.|++  |.||+|..      .++|.....   ...+++.+|+.++++++   |||++++++++.+.+..++
T Consensus         2 ~y~~~~~l~~g~~--g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~l   79 (277)
T cd06917           2 LYQRLELIGRGAY--GAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWI   79 (277)
T ss_pred             hhhhhhheeccCC--ceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEE
Confidence            4566778999999  99999832      122222211   22345678999999987   9999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ||||+++++|.+++..   ..+++...+.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+.... 
T Consensus        80 v~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06917          80 IMEYAEGGSVRTLMKA---GPIAEKYISVIIREVLVALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQ  153 (277)
T ss_pred             EEecCCCCcHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHHEEEcCCCCEEEccCCceeecCC
Confidence            9999999999999865   3789999999999999999999999   99999999999999999999999999886543 


Q ss_pred             ----------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          170 ----------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       170 ----------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                +..|+|||.+..+ .++.++|+||||+++|+|++|..||...... .   ...    .....      .+
T Consensus       154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~-~---~~~----~~~~~------~~  219 (277)
T cd06917         154 NSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAF-R---AMM----LIPKS------KP  219 (277)
T ss_pred             CccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChh-h---hhh----ccccC------CC
Confidence                      3459999988654 4688999999999999999999999643110 0   000    00000      00


Q ss_pred             CccCH-HHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          239 TEVDK-KNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       239 ~~~~~-~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+. ..+.++.+++.+||+.||++|||+.++++
T Consensus       220 ~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~  254 (277)
T cd06917         220 PRLEDNGYSKLLREFVAACLDEEPKERLSAEELLK  254 (277)
T ss_pred             CCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence            11111 24568999999999999999999999975

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=9.6e-37  Score=256.66  Aligned_cols=233  Identities=19%  Similarity=0.235  Sum_probs=178.9

Q ss_pred             ccccCCCCCCCCcchhHHHH------HHHHHhcCCCCC----CcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           26 RSSLNDRNSPRSKSVWSCMR------ALMATVNSPYSP----SRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        26 ~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~----~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      ..+.+|.|+|  |.||++..      .++|........    ....+|+.++++++||||+++++++.+....+++|||+
T Consensus         3 ~~~~lg~G~~--g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    3 LVKKLGSGGF--GTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEESS--EEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             EeEEEEeCCC--EEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            3578999999  99999911      122222222111    11235899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      .+++|.+++..  ...+++..++.++.|++.||.+||+.   +++|+||||+||+++.++.++|+|||.+...       
T Consensus        81 ~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~  155 (260)
T PF00069_consen   81 PGGSLQDYLQK--NKPLSEEEILKIAYQILEALAYLHSK---GIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENF  155 (260)
T ss_dssp             TTEBHHHHHHH--HSSBBHHHHHHHHHHHHHHHHHHHHT---TEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEB
T ss_pred             ccccccccccc--cccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccc
Confidence            99999999983  45789999999999999999999999   9999999999999999999999999998642       


Q ss_pred             ----CCCCcCCCcccc-cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          169 ----SDKGCMAPECYK-RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       169 ----~~~~~~ape~~~-~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                          .+..|+|||.+. ....+.++|+||+|+++++|++|..||..... ......   .............    ....
T Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~-~~~~~~---~~~~~~~~~~~~~----~~~~  227 (260)
T PF00069_consen  156 NPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNS-DDQLEI---IEKILKRPLPSSS----QQSR  227 (260)
T ss_dssp             SSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSH-HHHHHH---HHHHHHTHHHHHT----TSHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc-hhhhhh---hhhcccccccccc----cccc
Confidence                155799999988 77889999999999999999999999974310 011111   1011000000000    0111


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          244 KNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .....+.+++.+||+.||++|||+.++++.
T Consensus       228 ~~~~~l~~li~~~l~~~p~~R~~~~~l~~~  257 (260)
T PF00069_consen  228 EKSEELRDLIKKMLSKDPEQRPSAEELLKH  257 (260)
T ss_dssp             TSHHHHHHHHHHHSSSSGGGSTTHHHHHTS
T ss_pred             hhHHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            113789999999999999999999999863

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=3.4e-35  Score=249.30  Aligned_cols=238  Identities=16%  Similarity=0.086  Sum_probs=178.6

Q ss_pred             hhhHHHHhhhccccccC--CCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEe
Q 048314           14 RSSLCTKLRNFCRSSLN--DRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMR   84 (274)
Q Consensus        14 ~~~l~~~~~~f~~~~~~--g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~   84 (274)
                      ..+.....++|...+.+  |.|+|  |.||++..      .+++..... ....  .|+.....+ +||||+++++.+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~~k~~~~~-~~~~--~e~~~~~~~~~h~~iv~~~~~~~~   80 (267)
T PHA03390          6 LSELVQFLKNCEIVKKLKLIDGKF--GKVSVLKHKPTQKLFVQKIIKAK-NFNA--IEPMVHQLMKDNPNFIKLYYSVTT   80 (267)
T ss_pred             HHHHHHHHHhhccccceeecCCCc--eEEEEEEEcCCCcEEEEEEEehh-hcch--hhHHHHHHhhcCCCEEEEEEEEec
Confidence            33444555666655555  99999  99998822      111111111 1111  133333222 69999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEeccc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKISDFG  163 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~d~g  163 (274)
                      .+..++||||+++++|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++ .++++|||
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~l~dfg  155 (267)
T PHA03390         81 LKGHVLIMDYIKDGDLFDLLKK--EGKLSEAEVKKIIRQLVEALNDLHKH---NIIHNDIKLENVLYDRAKDRIYLCDYG  155 (267)
T ss_pred             CCeeEEEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEeCCCCeEEEecCc
Confidence            9999999999999999999976  34899999999999999999999999   999999999999999988 99999999


Q ss_pred             cceecC-------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          164 LAKLLS-------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       164 ~~~~~~-------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      .+....       +..|+|||.+....++.++|+||||+++++|++|..||.....  .......+....         .
T Consensus       156 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~---------~  224 (267)
T PHA03390        156 LCKIIGTPSCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDED--EELDLESLLKRQ---------Q  224 (267)
T ss_pred             cceecCCCccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCc--chhhHHHHHHhh---------c
Confidence            886543       5679999999888899999999999999999999999973311  111111111110         0


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCC-hhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPS-MKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-~~evl~  272 (274)
                      .....+...+..+.+++.+||+.||.+||+ ++|+++
T Consensus       225 ~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        225 KKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             ccCCcccccCHHHHHHHHHHhccChhhCCchHHHHhc
Confidence            111233356678999999999999999996 699875

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=8.9e-36  Score=254.35  Aligned_cols=244  Identities=18%  Similarity=0.177  Sum_probs=179.8

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      |...+.+|.|++  |.||+|..      .++|.....    ...+.+.+|+.++++++|||++++++++.+.+..+++||
T Consensus         1 y~~~~~l~~g~~--~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e   78 (283)
T cd07835           1 YQKVEKIGEGTY--GVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFE   78 (283)
T ss_pred             CchheEecCCCC--eEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEe
Confidence            345677999999  99999821      122222211    223467899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+. ++|.+++.......+++..++.++.|++.||.|||+.   +++|+|++|+||+++.++.++++|||.+....    
T Consensus        79 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~---~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~  154 (283)
T cd07835          79 FLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVR  154 (283)
T ss_pred             ccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCcEEEeecccccccCCCcc
Confidence            995 6999999864445799999999999999999999999   99999999999999999999999999986432    


Q ss_pred             -------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH-------HHHHhh-hh--
Q 048314          170 -------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV-------YKCFIN-RE--  231 (274)
Q Consensus       170 -------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~-------~~~~~~-~~--  231 (274)
                             +..|+|||.+... .++.++|+||||+++|+|++|..||................       +..... ..  
T Consensus       155 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (283)
T cd07835         155 TYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYK  234 (283)
T ss_pred             ccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhh
Confidence                   4569999987654 56889999999999999999999996431111101100000       000000 00  


Q ss_pred             --hhhhhcCC--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          232 --LNKLVRGT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       232 --~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                        ........  ......+..+.+++.+||+.||++|||+.|+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  280 (283)
T cd07835         235 PTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQH  280 (283)
T ss_pred             hhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence              00000000  1112234678999999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=9.4e-36  Score=256.12  Aligned_cols=239  Identities=17%  Similarity=0.142  Sum_probs=178.9

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhcCCC-------CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPY-------SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~-------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      |...+.+|.|++  |.||+|..      .++|......       ....+..|++++++++|+||+++++++.+.+..++
T Consensus         2 y~~~~~lg~g~~--~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l   79 (298)
T cd07841           2 YEKGKKLGEGTY--AVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINL   79 (298)
T ss_pred             ceeeeeeeeccc--cEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEE
Confidence            556678999999  99999821      1222222111       12235689999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ||||+ +|+|.+++... ...+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++.... 
T Consensus        80 v~e~~-~~~L~~~i~~~-~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~  154 (298)
T cd07841          80 VFEFM-ETDLEKVIKDK-SIVLTPADIKSYMLMTLRGLEYLHSN---WILHRDLKPNNLLIASDGVLKLADFGLARSFGS  154 (298)
T ss_pred             EEccc-CCCHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCChhhEEEcCCCCEEEccceeeeeccC
Confidence            99999 89999999762 24799999999999999999999999   99999999999999999999999999987543 


Q ss_pred             ----------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh---h-----
Q 048314          170 ----------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN---R-----  230 (274)
Q Consensus       170 ----------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~-----  230 (274)
                                +..|+|||.+.. ..++.++|+||||+++++|++|.+||..... ..  .+.... .....   .     
T Consensus       155 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~-~~--~~~~~~-~~~~~~~~~~~~~~  230 (298)
T cd07841         155 PNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSD-ID--QLGKIF-EALGTPTEENWPGV  230 (298)
T ss_pred             CCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCcc-HH--HHHHHH-HHcCCCchhhhhhc
Confidence                      245899998754 4578899999999999999999777754321 11  111110 00000   0     


Q ss_pred             -hhhhhhcC---C-----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          231 -ELNKLVRG---T-----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       231 -~~~~~~~~---~-----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                       ........   .     ......+..+.+++.+||+.||++|||++|+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         231 TSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             ccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence             00000000   0     1112345788999999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=1e-35  Score=254.77  Aligned_cols=230  Identities=19%  Similarity=0.160  Sum_probs=181.6

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcC--CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS--PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      +|..-+.+|.|++  |.||++..      .++|....  ....+.+.+|+.++++++||||+++++++...+..++++||
T Consensus        20 ~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~   97 (285)
T cd06648          20 YLDNFVKIGEGST--GIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEF   97 (285)
T ss_pred             hhhcceEeccCCC--eEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEec
Confidence            5555678999999  99998821      11221211  12234467899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec------
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL------  168 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~------  168 (274)
                      +++++|.+++..   ..+++..+..++.|++.||+|||+.   +++|+||+|+||+++.++.++++|||.+...      
T Consensus        98 ~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~  171 (285)
T cd06648          98 LEGGALTDIVTH---TRMNEEQIATVCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPR  171 (285)
T ss_pred             cCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChhhEEEcCCCcEEEcccccchhhccCCcc
Confidence            999999999975   4689999999999999999999999   9999999999999999999999999976532      


Q ss_pred             -----CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          169 -----SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       169 -----~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                           ++..|+|||.+....++.++|+||||+++++|++|..||.....    ....    ...........    ..+.
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~----~~~~----~~~~~~~~~~~----~~~~  239 (285)
T cd06648         172 RKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPP----LQAM----KRIRDNLPPKL----KNLH  239 (285)
T ss_pred             cccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCH----HHHH----HHHHhcCCCCC----cccc
Confidence                 24579999999888889999999999999999999999864311    0000    00111100000    1122


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          244 KNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+..+.+++.+||+.||++|||+.++++
T Consensus       240 ~~~~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         240 KVSPRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             cCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence            34578999999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.9e-35  Score=246.88  Aligned_cols=233  Identities=19%  Similarity=0.207  Sum_probs=183.8

Q ss_pred             hccccccCCCCCCCCcchhHHHHH------HHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMRA------LMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~~------~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      +|...+.+|.|++  |.||++...      +++.....  ...+.+.+|+..+++++|+|++++++.+......++++||
T Consensus         1 ~y~~~~~l~~g~~--~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~   78 (253)
T cd05122           1 LFEILEKIGKGGF--GEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEF   78 (253)
T ss_pred             CceeeeeeccCCc--eEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEec
Confidence            3566788999999  999998321      12222221  1345678999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      +++++|.+++... ...+++..+..++.|++.||.+||+.   +++|+|++|+||+++.++.++|+|||.+....     
T Consensus        79 ~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  154 (253)
T cd05122          79 CSGGSLKDLLKST-NQTLTESQIAYVCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKAR  154 (253)
T ss_pred             CCCCcHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhcC---CEecCCCCHHHEEEccCCeEEEeeccccccccccccc
Confidence            9999999999862 35799999999999999999999998   99999999999999999999999999886543     


Q ss_pred             -----CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          170 -----DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       170 -----~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                           +..|++||.+.....+.++|+||||+++++|++|..||...... ...  .    . .........    ..+..
T Consensus       155 ~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~--~----~-~~~~~~~~~----~~~~~  222 (253)
T cd05122         155 NTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPM-KAL--F----K-IATNGPPGL----RNPEK  222 (253)
T ss_pred             cceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchH-HHH--H----H-HHhcCCCCc----Ccccc
Confidence                 34699999998888899999999999999999999999643110 000  0    0 000000000    11112


Q ss_pred             HHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          245 NLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .+..+.+++.+||+.||++|||++++++.
T Consensus       223 ~~~~~~~~i~~~l~~~p~~R~t~~~~l~~  251 (253)
T cd05122         223 WSDEFKDFLKKCLQKNPEKRPTAEQLLKH  251 (253)
T ss_pred             cCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            25779999999999999999999999863

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=3.1e-35  Score=251.12  Aligned_cols=239  Identities=19%  Similarity=0.171  Sum_probs=180.2

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      |...+.+|.|++  |.||++..      .++|....    ....+.+.+|+.++++++||||+++++++.+....++|+|
T Consensus         2 y~~~~~l~~g~~--~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e   79 (286)
T cd07832           2 YKILGRIGEGAH--GIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVME   79 (286)
T ss_pred             ceEEeecccCCC--cEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEec
Confidence            556678999999  99998721      11222221    1224567899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+ +++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+....    
T Consensus        80 ~~-~~~L~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~  154 (286)
T cd07832          80 YM-PSDLSEVLRD-EERPLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARLFSEEEP  154 (286)
T ss_pred             cc-CCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCC
Confidence            99 9999999976 346799999999999999999999999   99999999999999999999999999876543    


Q ss_pred             --------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh----------
Q 048314          170 --------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR----------  230 (274)
Q Consensus       170 --------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~----------  230 (274)
                              +..|+|||.+... .++.++||||+|+++++|++|.+||.....   . .............          
T Consensus       155 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~  230 (286)
T cd07832         155 RLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGEND---I-EQLAIVFRTLGTPNEETWPGLTS  230 (286)
T ss_pred             CccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCH---H-HHHHHHHHHcCCCChHHHhhccC
Confidence                    3469999988654 468899999999999999999777753311   1 1111111100000          


Q ss_pred             --hhhhhhcCC-------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          231 --ELNKLVRGT-------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       231 --~~~~~~~~~-------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                        .......+.       .........+.+++.+||+.||++|||++++++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         231 LPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             cchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence              000000000       0111234789999999999999999999999864

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=1.6e-35  Score=249.87  Aligned_cols=229  Identities=17%  Similarity=0.166  Sum_probs=181.1

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      |.....+|.|++  |.||+|..      .+++.....    ...+.+.+|+.++++++|+||+++++.+.+.+..++|+|
T Consensus         2 y~~~~~lg~G~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06626           2 WQRGNKIGGGTF--GKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFME   79 (264)
T ss_pred             ceeeeEeecCCC--cEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEe
Confidence            566788999999  99999821      122222221    133456799999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++++|.+++..  ...+++..+..++.|++.|+.|||+.   +++|+||+|.||+++.++.++++|||.+....    
T Consensus        80 ~~~~~~L~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~  154 (264)
T cd06626          80 YCSGGTLEELLEH--GRILDEHVIRVYTLQLLEGLAYLHSH---GIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTT  154 (264)
T ss_pred             cCCCCcHHHHHhh--cCCCChHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEcccccccccCCCCC
Confidence            9999999999975  34589999999999999999999999   99999999999999999999999999876532    


Q ss_pred             -----------CCCcCCCcccccCC---CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          170 -----------DKGCMAPECYKRTP---ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       170 -----------~~~~~ape~~~~~~---~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                                 +..|++||.+....   .+.++|+||||++++++++|..||..... ...  ...   .. ...     
T Consensus       155 ~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~-~~~--~~~---~~-~~~-----  222 (264)
T cd06626         155 TMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDN-EFQ--IMF---HV-GAG-----  222 (264)
T ss_pred             cccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcc-hHH--HHH---HH-hcC-----
Confidence                       35799999987665   78999999999999999999999964321 110  000   00 000     


Q ss_pred             hcCCccCH--HHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 VRGTEVDK--KNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ~~~~~~~~--~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       .....+.  ..+..+.+++.+||+.||++|||+.+++.
T Consensus       223 -~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         223 -HKPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             -CCCCCCcccccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence             0111222  23677889999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=4.2e-35  Score=247.48  Aligned_cols=225  Identities=18%  Similarity=0.095  Sum_probs=178.5

Q ss_pred             CCCCCCCCcchhHHHHH------HHHHhc-----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCC
Q 048314           30 NDRNSPRSKSVWSCMRA------LMATVN-----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPW   98 (274)
Q Consensus        30 ~g~g~~~~g~vy~~~~~------~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g   98 (274)
                      +|.|++  |.||++...      ++|...     .....+.+.+|+.++++++||||+++++.+.++...++++||++++
T Consensus         1 lg~g~~--~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   78 (262)
T cd05572           1 LGVGGF--GRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGG   78 (262)
T ss_pred             CCCCCc--eEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCC
Confidence            588889  899988221      111111     1122345779999999999999999999999999999999999999


Q ss_pred             CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---------
Q 048314           99 DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---------  169 (274)
Q Consensus        99 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---------  169 (274)
                      +|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+....         
T Consensus        79 ~L~~~l~~--~~~l~~~~~~~~~~~i~~~l~~lH~~---~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~~  153 (262)
T cd05572          79 ELWTILRD--RGLFDEYTARFYIACVVLAFEYLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFC  153 (262)
T ss_pred             cHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEEcCCCCEEEeeCCcccccCccccccccc
Confidence            99999975  34689999999999999999999999   99999999999999999999999999987543         


Q ss_pred             -CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHH
Q 048314          170 -DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLEN  248 (274)
Q Consensus       170 -~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (274)
                       +..|++||.+....++.++|+||+|+++|++++|..||.........  ..   ..      ..........+...+.+
T Consensus       154 ~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~--~~---~~------~~~~~~~~~~~~~~~~~  222 (262)
T cd05572         154 GTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPME--IY---ND------ILKGNGKLEFPNYIDKA  222 (262)
T ss_pred             CCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHH--HH---HH------HhccCCCCCCCcccCHH
Confidence             45699999988888899999999999999999999999754221110  00   00      00000111234444778


Q ss_pred             HHHHHHHhhccCCCCCCC-----hhhHHh
Q 048314          249 LVKVGLWCVQDEPALRPS-----MKCVVM  272 (274)
Q Consensus       249 ~~~li~~cl~~dp~~Rps-----~~evl~  272 (274)
                      +.+++.+||+.||++|||     ++|+++
T Consensus       223 ~~~~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         223 AKDLIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             HHHHHHHHccCChhhCcCCcccCHHHHhc
Confidence            999999999999999999     888875

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=1.8e-35  Score=255.43  Aligned_cols=245  Identities=16%  Similarity=0.130  Sum_probs=177.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC----
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS----   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----   86 (274)
                      .++|...+.+|.|++  |.||++..      .++|.....    .....+.+|++++++++||||++++++|...+    
T Consensus        11 ~~~y~~~~~lg~g~~--~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   88 (310)
T cd07865          11 VSKYEKLAKIGQGTF--GEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYN   88 (310)
T ss_pred             hhheEEEEEeecCCC--EEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEeccccccc
Confidence            457888899999999  99998821      112222211    11223568999999999999999999987654    


Q ss_pred             ----cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           87 ----KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        87 ----~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                          ..++||||+. ++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+||
T Consensus        89 ~~~~~~~lv~e~~~-~~l~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~df  163 (310)
T cd07865          89 RYKGSFYLVFEFCE-HDLAGLLSN-KNVKFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADF  163 (310)
T ss_pred             CCCceEEEEEcCCC-cCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCcEEECcC
Confidence                3499999996 588888875 344689999999999999999999999   9999999999999999999999999


Q ss_pred             ccceecC---------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH
Q 048314          163 GLAKLLS---------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC  226 (274)
Q Consensus       163 g~~~~~~---------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~  226 (274)
                      |.+....               +..|+|||.+... .++.++|+||||+++|+|++|..||..... .........+...
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~-~~~~~~~~~~~~~  242 (310)
T cd07865         164 GLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTE-QHQLTLISQLCGS  242 (310)
T ss_pred             CCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCC
Confidence            9886432               3459999987654 467899999999999999999999864421 1111111111000


Q ss_pred             Hhhhhhh---------hhhcCC---------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          227 FINRELN---------KLVRGT---------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       227 ~~~~~~~---------~~~~~~---------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .......         ....+.         ..+......+.+++.+||+.||++|||++|+++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h  307 (310)
T cd07865         243 ITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALNH  307 (310)
T ss_pred             CChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhcC
Confidence            0000000         000000         0011123567899999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=9.6e-36  Score=255.93  Aligned_cols=233  Identities=15%  Similarity=0.153  Sum_probs=184.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhc--CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN--SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .++|...+.+|.|++  |.||++..      .++|...  .....+.+.+|+.++++++||||+++++.+...+..++|+
T Consensus        18 ~~~~~~~~~lg~g~~--g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~   95 (293)
T cd06647          18 KKKYTRFEKIGQGAS--GTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVM   95 (293)
T ss_pred             hhhceeeeEecCCCC--eEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEE
Confidence            467778889999999  99999821      1122211  1122345778999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++++|.+++..   ..+++..+..++.|++.|+.|||+.   +++|+|++|+||+++.++.++|+|||++....   
T Consensus        96 e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~---gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~  169 (293)
T cd06647          96 EYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ  169 (293)
T ss_pred             ecCCCCcHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhC---CEeeccCCHHHEEEcCCCCEEEccCcceecccccc
Confidence            99999999999974   4589999999999999999999999   99999999999999999999999999875332   


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                              +..|++||.+....++.++|+||||+++|++++|..||....... .  +.    .....+ .    .....
T Consensus       170 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~-~--~~----~~~~~~-~----~~~~~  237 (293)
T cd06647         170 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR-A--LY----LIATNG-T----PELQN  237 (293)
T ss_pred             cccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhh-h--ee----ehhcCC-C----CCCCC
Confidence                    345999999988888999999999999999999999996431110 0  00    000000 0    00012


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      +...+..+.+++.+||..+|++||++.+++..
T Consensus       238 ~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         238 PEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             ccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            33445678999999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=3.6e-35  Score=252.16  Aligned_cols=242  Identities=17%  Similarity=0.155  Sum_probs=179.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ++|.....+|.|.+  |.||+|..      .++|.....    ...+.+.+|++++++++||||+++++++.+....++|
T Consensus         2 ~~y~~~~~l~~g~~--~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   79 (294)
T PLN00009          2 DQYEKVEKIGEGTY--GVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLV   79 (294)
T ss_pred             CceEEEEEecCCCC--EEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEE
Confidence            46777888999999  99999821      112222111    2234578999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEeccccceecC-
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKISDFGLAKLLS-  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~d~g~~~~~~-  169 (274)
                      |||++ ++|.+++.......+++.....++.|++.||.|||+.   +++|+||+|+||+++. +..+|++|||++.... 
T Consensus        80 ~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~  155 (294)
T PLN00009         80 FEYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLARAFGI  155 (294)
T ss_pred             Eeccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCcceEEEECCCCEEEEcccccccccCC
Confidence            99996 5888888764444578899999999999999999999   9999999999999984 5678999999886432 


Q ss_pred             ----------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh--------
Q 048314          170 ----------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR--------  230 (274)
Q Consensus       170 ----------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--------  230 (274)
                                +..|+|||.+... .++.++|+||||+++|+|++|..||.......   .+.... ......        
T Consensus       156 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~---~~~~~~-~~~~~~~~~~~~~~  231 (294)
T PLN00009        156 PVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEID---ELFKIF-RILGTPNEETWPGV  231 (294)
T ss_pred             CccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHH-HHhCCCChhhcccc
Confidence                      3569999988653 57889999999999999999999996431111   111100 000000        


Q ss_pred             -hhhhhh------cCC---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          231 -ELNKLV------RGT---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       231 -~~~~~~------~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                       ......      ...   ......+..+.+++.+||+.||++|||+.++++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~  284 (294)
T PLN00009        232 TSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEH  284 (294)
T ss_pred             ccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             000000      000   0112335678999999999999999999999863

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=2.4e-35  Score=253.18  Aligned_cols=244  Identities=17%  Similarity=0.111  Sum_probs=177.4

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhc----CCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCc---
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVN----SPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSK---   87 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~----~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~---   87 (274)
                      ++|...+.+|.|++  |.||+|.      ..++|...    .......+.+|+.+++++. ||||+++++++...+.   
T Consensus         1 ~~y~~~~~lg~g~~--g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~   78 (295)
T cd07837           1 DAYEKLEKIGEGTY--GKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGK   78 (295)
T ss_pred             CCceEeeEecccCC--eEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCC
Confidence            35777889999999  9999982      11112111    1123356788999999996 6999999999877655   


Q ss_pred             --ceEEEEeCCCCCHHHHHHhCC---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEec
Q 048314           88 --PSTEAALDLPWDLAYIIFCSA---ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKISD  161 (274)
Q Consensus        88 --~~lv~e~~~~gsL~~~l~~~~---~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~d  161 (274)
                        .+++|||+++ +|.+++....   ...+++..++.++.|++.||.|||+.   +++|+||+|+||+++. ++.++++|
T Consensus        79 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~~~nil~~~~~~~~kl~d  154 (295)
T cd07837          79 PSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH---GVMHRDLKPQNLLVDKQKGLLKIAD  154 (295)
T ss_pred             ceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEecCCCeEEEee
Confidence              7999999985 8999887532   23589999999999999999999999   9999999999999998 88999999


Q ss_pred             cccceecC-----------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh
Q 048314          162 FGLAKLLS-----------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN  229 (274)
Q Consensus       162 ~g~~~~~~-----------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                      ||.+....           ++.|+|||.+.. ..++.++|+||||+++|+|++|..||...........+...... ...
T Consensus       155 fg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~  233 (295)
T cd07837         155 LGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGT-PTE  233 (295)
T ss_pred             cccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC-CCh
Confidence            99886432           456999998865 45789999999999999999999999643211111100000000 000


Q ss_pred             hhhhhh------h-cCC-------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          230 RELNKL------V-RGT-------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       230 ~~~~~~------~-~~~-------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ......      . .+.       ......+..+.++|.+||+.||.+|||+.|++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         234 QVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             hhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            000000      0 000       011234567899999999999999999999985

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-35  Score=248.74  Aligned_cols=245  Identities=15%  Similarity=0.146  Sum_probs=188.0

Q ss_pred             hhhccccccCCCCCCCCcchhHH------HHHHHHHhc-CCCCCCcHHHHHHHHhcCCC--Cc----cceEeEEEEeCCc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC------MRALMATVN-SPYSPSRPLTLTSIVSRVSW--TT----DIEVSSVAMRGSK   87 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~-~~~~~~~~~~e~~~l~~l~h--~n----iv~l~~~~~~~~~   87 (274)
                      ++.|...+++|+|.|  |.|-++      ..+++|+++ ...-.+..+-|+++|.++.+  ||    +|++.+|+.-.++
T Consensus        88 ~~Ry~i~~~lGeGtF--GkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTF--GKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             ccceehhhhhcCCcc--cceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            567777899999999  999888      222233332 22355667789999999952  34    6888899999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC--------------
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE--------------  153 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~--------------  153 (274)
                      .|+|+|.+ |.|+.+||..++..+++..++..++.|+++++++||+.   +++|.||||+|||+.+              
T Consensus       166 iCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~---kl~HTDLKPENILfvss~~~~~~~~k~~~~  241 (415)
T KOG0671|consen  166 ICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDL---KLTHTDLKPENILFVSSEYFKTYNPKKKVC  241 (415)
T ss_pred             eEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhc---ceeecCCChheEEEeccceEEEeccCCccc
Confidence            99999976 56999999998888899999999999999999999999   9999999999999832              


Q ss_pred             ------CCcEEEeccccceec--------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHH
Q 048314          154 ------FWTAKISDFGLAKLL--------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL  219 (274)
Q Consensus       154 ------~~~~kl~d~g~~~~~--------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~  219 (274)
                            +..++++|||.+...        .|..|.|||++.+..++.++||||+||+|.|+.+|...|++++... ..-+
T Consensus       242 ~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~E-HLaM  320 (415)
T KOG0671|consen  242 FIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLE-HLAM  320 (415)
T ss_pred             eeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHH-HHHH
Confidence                  345799999998754        3788999999999999999999999999999999999999874221 1111


Q ss_pred             HHHHH-----HHH---------hhhhhh----------h-hhcCC-------ccCHHHHHHHHHHHHHhhccCCCCCCCh
Q 048314          220 TNWVY-----KCF---------INRELN----------K-LVRGT-------EVDKKNLENLVKVGLWCVQDEPALRPSM  267 (274)
Q Consensus       220 ~~~~~-----~~~---------~~~~~~----------~-~~~~~-------~~~~~~~~~~~~li~~cl~~dp~~Rps~  267 (274)
                      ...+.     ...         ..+.+.          . ..++.       .........+.+|++.||..||.+|+|+
T Consensus       321 MerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl  400 (415)
T KOG0671|consen  321 MERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITL  400 (415)
T ss_pred             HHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccH
Confidence            11000     000         000000          0 00000       2344566789999999999999999999


Q ss_pred             hhHHh
Q 048314          268 KCVVM  272 (274)
Q Consensus       268 ~evl~  272 (274)
                      .|++.
T Consensus       401 ~EAL~  405 (415)
T KOG0671|consen  401 REALS  405 (415)
T ss_pred             HHHhc
Confidence            99875

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=1.9e-35  Score=256.09  Aligned_cols=211  Identities=14%  Similarity=0.100  Sum_probs=164.7

Q ss_pred             CCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 048314           57 PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECE  136 (274)
Q Consensus        57 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~  136 (274)
                      .+.+.+|+.++++++|+||+++++++.+.+..+++|||+++|+|.+++.......+++.....++.|++.||.|||+.  
T Consensus        43 ~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~--  120 (314)
T cd08216          43 LKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSK--  120 (314)
T ss_pred             HHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC--
Confidence            356789999999999999999999999999999999999999999999875556799999999999999999999999  


Q ss_pred             CCcccCCCCCCceEEcCCCcEEEeccccceecC------------------CCCcCCCcccccC--CCccccceeehhHh
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------------------DKGCMAPECYKRT--PISVKADVYGYGIV  196 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------------------~~~~~ape~~~~~--~~~~~~Di~s~G~~  196 (274)
                       +++|+||+|+||+++.++.++++|||.+....                  +..|+|||.+...  .++.++|+||||++
T Consensus       121 -~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~i  199 (314)
T cd08216         121 -GFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGIT  199 (314)
T ss_pred             -CeecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHH
Confidence             99999999999999999999999999775321                  3469999988653  57889999999999


Q ss_pred             HHHHhhcCCCccccCCChhhHHHHHHHHHH----Hhh-------hhhhh----hhc-------CCccCHHHHHHHHHHHH
Q 048314          197 LLETICCWENMEIDASKPEEIILTNWVYKC----FIN-------RELNK----LVR-------GTEVDKKNLENLVKVGL  254 (274)
Q Consensus       197 l~el~~g~~p~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~----~~~-------~~~~~~~~~~~~~~li~  254 (274)
                      +++|++|..||.......   .+.......    ...       .....    ..+       ...........+.+++.
T Consensus       200 l~el~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  276 (314)
T cd08216         200 ACELANGHVPFKDMPATQ---MLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVE  276 (314)
T ss_pred             HHHHHhCCCCCCCCCHHH---HHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHH
Confidence            999999999997432111   110000000    000       00000    000       00122334567899999


Q ss_pred             HhhccCCCCCCChhhHHhh
Q 048314          255 WCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       255 ~cl~~dp~~Rps~~evl~~  273 (274)
                      +||+.||++|||++++++.
T Consensus       277 ~~l~~~P~~Rpt~~~ll~~  295 (314)
T cd08216         277 LCLQRDPESRPSASQLLNH  295 (314)
T ss_pred             HHhhcCCCcCcCHHHHhcC
Confidence            9999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=1e-35  Score=250.67  Aligned_cols=231  Identities=19%  Similarity=0.131  Sum_probs=185.3

Q ss_pred             hccccccCCCCCCCCcchhHHHHH------HHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMRA------LMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~~------~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +|.....+|.|++  |.||++...      ++|.     .......+.+.+|++++++++||||+++++.+.++...++|
T Consensus         1 ~y~~~~~i~~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   78 (258)
T cd05578           1 HFELLRVIGKGAF--GKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLV   78 (258)
T ss_pred             CceEEEEeccCCC--ceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEE
Confidence            3566788999999  999998221      1111     11112345678999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      +||+.+++|.+++..  ...+++.....++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+....  
T Consensus        79 ~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~  153 (258)
T cd05578          79 VDLLLGGDLRYHLSQ--KVKFSEEQVKFWICEIVLALEYLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATKVTPD  153 (258)
T ss_pred             EeCCCCCCHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEEcCCCCEEEeecccccccCCC
Confidence            999999999999976  25789999999999999999999999   99999999999999999999999999886533  


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                              +..|++||.+....++.++|+||||+++|+|++|..||........     .........       .....
T Consensus       154 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-----~~~~~~~~~-------~~~~~  221 (258)
T cd05578         154 TLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIR-----DQIRAKQET-------ADVLY  221 (258)
T ss_pred             ccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHH-----HHHHHHhcc-------ccccC
Confidence                    3469999999888889999999999999999999999975532211     111111000       11124


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCCh--hhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSM--KCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~--~evl~  272 (274)
                      +...+..+.+++.+||+.||.+||++  .|+++
T Consensus       222 ~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~~  254 (258)
T cd05578         222 PATWSTEAIDAINKLLERDPQKRLGDNLKDLKN  254 (258)
T ss_pred             cccCcHHHHHHHHHHccCChhHcCCccHHHHhc
Confidence            44566889999999999999999999  88764

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=1.3e-34  Score=249.11  Aligned_cols=236  Identities=14%  Similarity=0.069  Sum_probs=172.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH---------HHHHHhcCCCCCCc---------------HHHHHHHHhcCCCCccce
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSPYSPSR---------------PLTLTSIVSRVSWTTDIE   77 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~~~~~~---------------~~~e~~~l~~l~h~niv~   77 (274)
                      +.|...+.+|+|+|  |.||+|..         ++++...  ...+.               ...+...+..+.|+|+++
T Consensus        12 ~~y~i~~~LG~G~f--G~Vy~~~~~~~~~~~~~~~~k~~~--~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~   87 (294)
T PHA02882         12 KEWKIDKLIGCGGF--GCVYETQCASDHCINNQAVAKIEN--LENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPK   87 (294)
T ss_pred             CceEEeeEEecCCC--ceEEEEEEcCCcccccceEEEecc--ccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCc
Confidence            56888899999999  99999821         1111110  11111               123344556778999999


Q ss_pred             EeEEEEeCC----cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC
Q 048314           78 VSSVAMRGS----KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE  153 (274)
Q Consensus        78 l~~~~~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~  153 (274)
                      +++.+....    ..++++|++. .++.+.+..  ....++..++.++.|++.||.|||+.   +++||||||+||+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiHrDiKp~Nill~~  161 (294)
T PHA02882         88 YYGCGSFKRCRMYYRFILLEKLV-ENTKEIFKR--IKCKNKKLIKNIMKDMLTTLEYIHEH---GISHGDIKPENIMVDG  161 (294)
T ss_pred             EEEeeeEecCCceEEEEEEehhc-cCHHHHHHh--hccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcC
Confidence            999876543    3477888764 467777764  23468888999999999999999999   9999999999999999


Q ss_pred             CCcEEEeccccceec------------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChh
Q 048314          154 FWTAKISDFGLAKLL------------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPE  215 (274)
Q Consensus       154 ~~~~kl~d~g~~~~~------------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~  215 (274)
                      ++.++|+|||+++..                  +++.|+|||...+..++.++|||||||+++||++|..||........
T Consensus       162 ~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~  241 (294)
T PHA02882        162 NNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGN  241 (294)
T ss_pred             CCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchH
Confidence            999999999998642                  36779999999888899999999999999999999999975422221


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          216 EIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ......   ..+    ...+..+......++..+.+++..||+.+|++||++.++++.|
T Consensus       242 ~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        242 LIHAAK---CDF----IKRLHEGKIKIKNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             HHHHhH---HHH----HHHhhhhhhccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            111100   000    1111111111223457899999999999999999999998764

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=5.8e-35  Score=249.36  Aligned_cols=226  Identities=20%  Similarity=0.188  Sum_probs=172.8

Q ss_pred             cCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHHh---cCCCCccceEeEEEEeCCcceEEEEe
Q 048314           29 LNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIVS---RVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l~---~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      ++|+|+|  |.||++..      .++|.....     .....+.+|..+++   ..+||||+++++.+.+.+..++||||
T Consensus         1 ~lg~G~~--g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~   78 (279)
T cd05633           1 IIGRGGF--GEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDL   78 (279)
T ss_pred             CcccCCC--eEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEec
Confidence            4899999  99998721      112211111     11122344544333   44799999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec------
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL------  168 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~------  168 (274)
                      +++|+|.+++..  .+.+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++++|||++...      
T Consensus        79 ~~~~~L~~~i~~--~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~  153 (279)
T cd05633          79 MNGGDLHYHLSQ--HGVFSEKEMRFYATEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH  153 (279)
T ss_pred             CCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCCCCCHHHEEECCCCCEEEccCCcceeccccCcc
Confidence            999999999975  45699999999999999999999999   9999999999999999999999999988543      


Q ss_pred             ---CCCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          169 ---SDKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       169 ---~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                         ++..|+|||.+.. ..++.++|+||||+++++|++|..||......... .+....           ...+...+..
T Consensus       154 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~-~~~~~~-----------~~~~~~~~~~  221 (279)
T cd05633         154 ASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH-EIDRMT-----------LTVNVELPDS  221 (279)
T ss_pred             CcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHH-HHHHHh-----------hcCCcCCccc
Confidence               3668999998864 45789999999999999999999999654222111 111000           0011124455


Q ss_pred             HHHHHHHHHHHhhccCCCCCC-----ChhhHHhh
Q 048314          245 NLENLVKVGLWCVQDEPALRP-----SMKCVVMM  273 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rp-----s~~evl~~  273 (274)
                      .+..+.+++.+||+.||++||     |+.|+++.
T Consensus       222 ~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         222 FSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             cCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence            678899999999999999999     59998864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=4.1e-35  Score=247.28  Aligned_cols=229  Identities=19%  Similarity=0.248  Sum_probs=178.4

Q ss_pred             ccccccCCCCCCCCcchhHHHH----------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR----------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      |...+.+|.|++  |.||++..          ..+......   .....+..|+.++++++||||+++++++.+....++
T Consensus         2 y~i~~~ig~g~~--g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   79 (260)
T cd08222           2 YILQQRLGKGSF--GTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCI   79 (260)
T ss_pred             ceeeeeecCCCC--ceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEE
Confidence            555678999999  99997711          111111111   112235578999999999999999999999899999


Q ss_pred             EEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           91 EAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      |+||+++++|.+++...  ....+++..++.++.|++.||.|||+.   +++|+|++|+||+++. ..++++|||.+...
T Consensus        80 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~~l~~~nili~~-~~~~l~d~g~~~~~  155 (260)
T cd08222          80 ITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR---RILHRDLKAKNIFLKN-NLLKIGDFGVSRLL  155 (260)
T ss_pred             EEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc---CccccCCChhheEeec-CCEeecccCceeec
Confidence            99999999999998742  335699999999999999999999999   9999999999999976 46999999987643


Q ss_pred             C-----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 S-----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 ~-----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                      .           +..|++||.+....++.++|+||||+++++|++|..||....   . ...   .... ...      .
T Consensus       156 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~---~-~~~---~~~~-~~~------~  221 (260)
T cd08222         156 MGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN---F-LSV---VLRI-VEG------P  221 (260)
T ss_pred             CCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc---H-HHH---HHHH-HcC------C
Confidence            2           456999999887788899999999999999999999985321   1 000   0000 000      0


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....+...+.++.+++.+||+.||++||++.|+++
T Consensus       222 ~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         222 TPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             CCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence            11234566778999999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=2.9e-35  Score=247.12  Aligned_cols=231  Identities=23%  Similarity=0.242  Sum_probs=184.0

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|.....+|.|++  |.||++..      .+++...    ......++.+|+.++++++|+||+++++++.+....++|+
T Consensus         1 ~y~~~~~i~~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~   78 (256)
T cd08530           1 DFKVLKKLGKGSY--GSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVM   78 (256)
T ss_pred             CceEeeeecCCCc--eeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEe
Confidence            3566778999999  99998711      1111111    1122345678999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           93 ALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      ||+++++|.+++...  ....+++..++.++.|++.||.|||+.   +++|+|++|.||+++.++.++++|||.+...  
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~---~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~  155 (256)
T cd08530          79 EYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVLKK  155 (256)
T ss_pred             hhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEEecCCcEEEeeccchhhhcc
Confidence            999999999998753  235689999999999999999999999   9999999999999999999999999988653  


Q ss_pred             -------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          169 -------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       169 -------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             .+..|++||.+....++.++|+||+|++++++++|..||.....    ..+..    ....    ..  ....
T Consensus       156 ~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~----~~~~~----~~~~----~~--~~~~  221 (256)
T cd08530         156 NMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSM----QDLRY----KVQR----GK--YPPI  221 (256)
T ss_pred             CCcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHH----HHhc----CC--CCCC
Confidence                   25679999999888889999999999999999999999964311    01100    0000    00  0124


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +...+.++.+++.+||+.+|++|||+.++++
T Consensus       222 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         222 PPIYSQDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             chhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            4466788999999999999999999999986

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=5.7e-35  Score=248.98  Aligned_cols=236  Identities=15%  Similarity=0.114  Sum_probs=174.3

Q ss_pred             cccccCCCCCCCCcchhHHHH------HHHHHhcC---CCCCCcHHHHHHHHhcCC-CCccceEeEEEEeC--CcceEEE
Q 048314           25 CRSSLNDRNSPRSKSVWSCMR------ALMATVNS---PYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRG--SKPSTEA   92 (274)
Q Consensus        25 ~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~---~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~--~~~~lv~   92 (274)
                      ...+.+|.|++  |.||+|..      .++|....   ........+|+.++.++. |+|++++++++.+.  +..++||
T Consensus         2 ~~~~~lg~g~~--~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~   79 (282)
T cd07831           2 KILGKIGEGTF--SEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVF   79 (282)
T ss_pred             ceEeecccccc--ceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEE
Confidence            34567999999  99999821      11111111   112223457999999986 99999999999887  8899999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+. |+|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||+|+||+++. +.++|+|||.+....   
T Consensus        80 e~~~-~~l~~~l~~-~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~  153 (282)
T cd07831          80 ELMD-MNLYELIKG-RKRPLPEKRVKSYMYQLLKSLDHMHRN---GIFHRDIKPENILIKD-DILKLADFGSCRGIYSKP  153 (282)
T ss_pred             ecCC-ccHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEcC-CCeEEEecccccccccCC
Confidence            9997 588888875 335789999999999999999999999   9999999999999999 999999999986542   


Q ss_pred             -------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH-----------hhh
Q 048314          170 -------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF-----------INR  230 (274)
Q Consensus       170 -------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-----------~~~  230 (274)
                             +..|+|||.+.. ..++.++|+|||||++|+|++|..||......    ..........           ...
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  229 (282)
T cd07831         154 PYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNEL----DQIAKIHDVLGTPDAEVLKKFRKS  229 (282)
T ss_pred             CcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHH----HHHHHHHHHcCCCCHHHHHhhccc
Confidence                   456999997654 45688999999999999999999999643211    1111111000           000


Q ss_pred             hhhhhhcCC-------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          231 ELNKLVRGT-------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       231 ~~~~~~~~~-------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .......+.       ......+..+.+++.+||+.||++|||+.++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         230 RHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             ccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence            000000000       011234688999999999999999999999986

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=4.9e-35  Score=249.64  Aligned_cols=234  Identities=18%  Similarity=0.167  Sum_probs=176.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHH-HhcCCCCccceEeEEEEeCCcceEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSI-VSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ++|...+.+|.|+|  |.||++..      .++|.....   .....+..|+.+ ++.++||||+++++++.+++..+++
T Consensus         1 ~~~~~~~~ig~g~~--g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv   78 (283)
T cd06617           1 DDLEVIEELGRGAY--GVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWIC   78 (283)
T ss_pred             CCceEEEEecccCC--eEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEE
Confidence            46777888999999  99999821      112222211   112335566665 5667899999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           92 AALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      |||++ |+|.+++...  ....+++..++.++.|++.||.|||+++  +++|+||||+||+++.++.+||+|||.+... 
T Consensus        79 ~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~  155 (283)
T cd06617          79 MEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKL--SVIHRDVKPSNVLINRNGQVKLCDFGISGYLV  155 (283)
T ss_pred             hhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecccccccc
Confidence            99996 6898888653  2346899999999999999999999852  8999999999999999999999999998643 


Q ss_pred             ---------CCCCcCCCccccc----CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          169 ---------SDKGCMAPECYKR----TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       169 ---------~~~~~~ape~~~~----~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                               ++..|+|||.+..    ..++.++|+||||+++|+|++|..||........  .+..    . ...     
T Consensus       156 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~--~~~~----~-~~~-----  223 (283)
T cd06617         156 DSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQ--QLKQ----V-VEE-----  223 (283)
T ss_pred             cccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHH--HHHH----H-Hhc-----
Confidence                     2456999998754    3467899999999999999999999963211111  1100    0 000     


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+.......+.++.+++.+||..+|++|||+.++++
T Consensus       224 ~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         224 PSPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             CCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            0111112234678999999999999999999999986

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=4.2e-35  Score=255.81  Aligned_cols=239  Identities=15%  Similarity=0.088  Sum_probs=174.0

Q ss_pred             cCCCC--CCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCC
Q 048314           29 LNDRN--SPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        29 ~~g~g--~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      .||.|  ++  |.||.+..      .++|.....    ...+.+.+|+.+++.++||||+++++++..++..++|+||+.
T Consensus         5 ~ig~g~~~~--~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~   82 (328)
T cd08226           5 EIGRGFCNL--TSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMA   82 (328)
T ss_pred             HhCCcccCc--eeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEeccc
Confidence            35666  66  88988821      112222211    112456789999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------  168 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--------  168 (274)
                      +++|.+++.+.....+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++++||+.....        
T Consensus        83 ~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~  159 (328)
T cd08226          83 YGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQN---GYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAK  159 (328)
T ss_pred             CCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCcccc
Confidence            99999999875555699999999999999999999999   9999999999999999999999998643211        


Q ss_pred             ----------CCCCcCCCcccccC--CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH-------------H
Q 048314          169 ----------SDKGCMAPECYKRT--PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW-------------V  223 (274)
Q Consensus       169 ----------~~~~~~ape~~~~~--~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~-------------~  223 (274)
                                .+..|++||.+...  .++.++|+||||+++|+|++|..||...............             .
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (328)
T cd08226         160 VVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCE  239 (328)
T ss_pred             ccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchh
Confidence                      12359999998763  4788999999999999999999999643211110000000             0


Q ss_pred             HHHHhh-----------hhhh-----hhhcC---CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          224 YKCFIN-----------RELN-----KLVRG---TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       224 ~~~~~~-----------~~~~-----~~~~~---~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .....+           ....     .....   ...+...+..+.+++++||+.||++|||++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~  307 (328)
T cd08226         240 ESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLS  307 (328)
T ss_pred             hhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhh
Confidence            000000           0000     00000   0123456778999999999999999999999986

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=3.3e-35  Score=251.52  Aligned_cols=236  Identities=20%  Similarity=0.202  Sum_probs=175.3

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcC---CCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS---PYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~---~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|.....+|.|+|  |.||++..      .++|....   ......+.+|+.++.++. ||||+++++++..++..+++|
T Consensus         5 ~~~~~~~lg~G~~--g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~   82 (288)
T cd06616           5 DLKDLGEIGRGAF--GTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICM   82 (288)
T ss_pred             HhHHHHHhCCCCc--eEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEE
Confidence            4555677999999  99998711      11111111   122345678999999997 999999999999999999999


Q ss_pred             EeCCCCCHHHHH---HhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           93 ALDLPWDLAYII---FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        93 e~~~~gsL~~~l---~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      ||+. +++.++.   .......+++.....++.|++.||+|||+.  .+++||||||+||+++.++.++|+|||++... 
T Consensus        83 e~~~-~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  159 (288)
T cd06616          83 ELMD-ISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRNGNIKLCDFGISGQLV  159 (288)
T ss_pred             eccc-CCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhc--CCeeccCCCHHHEEEccCCcEEEeecchhHHhc
Confidence            9986 4555543   222346799999999999999999999963  18999999999999999999999999987542 


Q ss_pred             ---------CCCCcCCCcccccC---CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          169 ---------SDKGCMAPECYKRT---PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~---~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                               ++..|+|||.+...   .++.++|+||||+++|+|++|+.||....      .......... ....... 
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~-~~~~~~~-  231 (288)
T cd06616         160 DSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN------SVFDQLTQVV-KGDPPIL-  231 (288)
T ss_pred             cCCccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc------hHHHHHhhhc-CCCCCcC-
Confidence                     24579999998765   57899999999999999999999996431      0000000000 0000000 


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       +...+...+..+.+++.+||+.||++|||+.+|++
T Consensus       232 -~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~  266 (288)
T cd06616         232 -SNSEEREFSPSFVNFINLCLIKDESKRPKYKELLE  266 (288)
T ss_pred             -CCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence             11122345678999999999999999999999986

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=4.1e-35  Score=258.44  Aligned_cols=243  Identities=18%  Similarity=0.134  Sum_probs=180.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH------HHHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeC----
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG----   85 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~----   85 (274)
                      ..+.|...+.+|.|++  |.||++.      ..++|....    ....+.+.+|+.++++++||||+++++++...    
T Consensus        14 ~~~~y~~~~~lg~g~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (353)
T cd07850          14 VLKRYQNLKPIGSGAQ--GIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLE   91 (353)
T ss_pred             hhcceEEEEEeccCCC--EEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcc
Confidence            3477888999999999  9999882      112222211    12234566899999999999999999988643    


Q ss_pred             --CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccc
Q 048314           86 --SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG  163 (274)
Q Consensus        86 --~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g  163 (274)
                        ...++||||+. ++|.+.+..    .+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||
T Consensus        92 ~~~~~~lv~e~~~-~~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nil~~~~~~~kL~Dfg  163 (353)
T cd07850          92 EFQDVYLVMELMD-ANLCQVIQM----DLDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFG  163 (353)
T ss_pred             ccCcEEEEEeccC-CCHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCc
Confidence              35799999996 589888864    289999999999999999999999   99999999999999999999999999


Q ss_pred             cceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHH-----------H
Q 048314          164 LAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN-----------W  222 (274)
Q Consensus       164 ~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~-----------~  222 (274)
                      .+....          +..|+|||.+....++.++|+||||+++|+|++|+.||...+.......+..           .
T Consensus       164 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (353)
T cd07850         164 LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSR  243 (353)
T ss_pred             cceeCCCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH
Confidence            987543          4569999999888899999999999999999999999964421111000000           0


Q ss_pred             ----HHHHHhhhh------hhhhhcCC-------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          223 ----VYKCFINRE------LNKLVRGT-------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       223 ----~~~~~~~~~------~~~~~~~~-------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                          ......+..      ........       ..+...+..+.+++.+||+.||++|||+.|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~  310 (353)
T cd07850         244 LQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQ  310 (353)
T ss_pred             hhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                000000000      00000000       012234667899999999999999999999985

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=8.6e-35  Score=243.88  Aligned_cols=231  Identities=20%  Similarity=0.185  Sum_probs=185.2

Q ss_pred             hccccccCCCCCCCCcchhHHHHH------HHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeC--CcceE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMRA------LMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--SKPST   90 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~~------~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~l   90 (274)
                      +|...+.+|.|++  |.||+|...      +++.....    ...+.+.+|+.++++++||||+++++.+.+.  ...++
T Consensus         1 ~~~~~~~i~~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~l   78 (260)
T cd06606           1 EWTRGELLGRGSF--GSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNI   78 (260)
T ss_pred             CceeeeEeeecCc--eEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEE
Confidence            3666788999999  999998221      11211111    2245678999999999999999999999888  88999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ++||+++++|.+++...  ..+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.++|+|||.+.... 
T Consensus        79 v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~---~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~  153 (260)
T cd06606          79 FLEYVSGGSLSSLLKKF--GKLPEPVIRKYTRQILEGLAYLHSN---GIVHRDIKGANILVDSDGVVKLADFGCAKRLGD  153 (260)
T ss_pred             EEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEcccccEEeccc
Confidence            99999999999999863  3899999999999999999999999   99999999999999999999999999876543 


Q ss_pred             ------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          170 ------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       170 ------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                                  +..|++||.+.....+.++|+||||++++++++|..||.......      ......      ...-.
T Consensus       154 ~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~------~~~~~~------~~~~~  221 (260)
T cd06606         154 IETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPM------AALYKI------GSSGE  221 (260)
T ss_pred             ccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchH------HHHHhc------cccCC
Confidence                        346899999988888999999999999999999999997542100      000010      00001


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....+...+..+.+++.+||+.||.+|||+.+++.
T Consensus       222 ~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         222 PPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             CcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence            11244555788999999999999999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-34  Score=245.43  Aligned_cols=240  Identities=18%  Similarity=0.132  Sum_probs=177.3

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcC---CCCccceEeEEEEeCCc---
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRV---SWTTDIEVSSVAMRGSK---   87 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l---~h~niv~l~~~~~~~~~---   87 (274)
                      |...+.+|.|++  |.||+|..      .++|.....    .....+.+|+.++.++   +|||++++++++.+.+.   
T Consensus         1 y~~~~~l~~g~~--~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~   78 (287)
T cd07838           1 YEELAEIGEGAY--GTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRE   78 (287)
T ss_pred             CeEEEEecccCc--eEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCC
Confidence            345677999999  99999832      122222211    1123456787777665   59999999999988776   


Q ss_pred             --ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           88 --PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        88 --~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                        .+++|||+. ++|.+++.......+++..++.++.|++.||.|||+.   +++|+|++|+||+++.++.++++|||.+
T Consensus        79 ~~~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~---~i~h~~l~~~nili~~~~~~~l~dfg~~  154 (287)
T cd07838          79 LKLTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSH---RIVHRDLKPQNILVTSDGQVKIADFGLA  154 (287)
T ss_pred             ceeEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhEEEccCCCEEEeccCcc
Confidence              899999997 5899998864445699999999999999999999999   9999999999999999999999999988


Q ss_pred             eecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh---
Q 048314          166 KLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL---  232 (274)
Q Consensus       166 ~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---  232 (274)
                      ....          +..|+|||.+....++.++|+||||+++|+|++|..||....   ....+.............   
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  231 (287)
T cd07838         155 RIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTS---EADQLDKIFDVIGLPSEEEWP  231 (287)
T ss_pred             eeccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCC---hHHHHHHHHHHcCCCChHhcC
Confidence            6543          445999999988888999999999999999999998886431   111111111100000000   


Q ss_pred             ------hhhhcCC------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 ------NKLVRGT------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 ------~~~~~~~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                            .......      .........+.+++.+||+.||++|||+.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         232 RNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             CCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence                  0000000      111234577889999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=7.7e-35  Score=250.79  Aligned_cols=243  Identities=15%  Similarity=0.089  Sum_probs=181.0

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC--
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS--   86 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--   86 (274)
                      ...++|...+.+|.|.+  |.||+|..      .++|....    ......+.+|+.++++++||||+++++++.+..  
T Consensus         4 ~~~~~~~~~~~lg~g~~--g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~   81 (302)
T cd07864           4 RCVDKFDIIGQIGEGTY--GQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDA   81 (302)
T ss_pred             hhhhhhheeeeecccCC--EEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchh
Confidence            45678888999999999  99999822      11222221    122345678999999999999999999987654  


Q ss_pred             --------cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 048314           87 --------KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK  158 (274)
Q Consensus        87 --------~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~k  158 (274)
                              ..++|+||+++ ++.+++.. ....+++..++.++.|++.||.|||+.   +++|+||+|+||++++++.++
T Consensus        82 ~~~~~~~~~~~lv~e~~~~-~l~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~k  156 (302)
T cd07864          82 LDFKKDKGAFYLVFEYMDH-DLMGLLES-GLVHFSEDHIKSFMKQLLEGLNYCHKK---NFLHRDIKCSNILLNNKGQIK  156 (302)
T ss_pred             hhccccCCcEEEEEcccCc-cHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCcEE
Confidence                    78999999975 78888765 345799999999999999999999999   999999999999999999999


Q ss_pred             EeccccceecC------------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH
Q 048314          159 ISDFGLAKLLS------------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK  225 (274)
Q Consensus       159 l~d~g~~~~~~------------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~  225 (274)
                      |+|||.+....            +..|++||.+.. ..++.++|+||||+++++|++|+.||..... .  ..+... ..
T Consensus       157 l~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~-~--~~~~~~-~~  232 (302)
T cd07864         157 LADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQE-L--AQLELI-SR  232 (302)
T ss_pred             eCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCh-H--HHHHHH-HH
Confidence            99999986532            345999998764 3568899999999999999999999964321 1  111111 01


Q ss_pred             HHhh---hhhhhh--------hcCC--------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          226 CFIN---RELNKL--------VRGT--------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       226 ~~~~---~~~~~~--------~~~~--------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....   .....+        .++.        ......+..+.+++.+||+.||.+|||+.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         233 LCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             HhCCCChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            0000   000000        0000        011123578899999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=9e-35  Score=243.85  Aligned_cols=232  Identities=22%  Similarity=0.224  Sum_probs=185.4

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|...+.+|.|++  |.||++..      .+++.....    ...+.+.+|++++++++|||++++++.+.+.+..++++
T Consensus         1 ~y~~~~~l~~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~   78 (258)
T cd08215           1 KYEIIKQIGKGSF--GKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVM   78 (258)
T ss_pred             CceEEeeeccCCC--eEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEE
Confidence            3566778999999  99998722      112222211    23345678999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           93 ALDLPWDLAYIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ||+++++|.+++....  ...+++..+..++.+++.||.|||+.   +++|+||+|+||+++.++.++++|||.+.... 
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~  155 (258)
T cd08215          79 EYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSS  155 (258)
T ss_pred             EecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHHeEEcCCCcEEECCccceeeccc
Confidence            9999999999998643  36799999999999999999999999   99999999999999999999999999886543 


Q ss_pred             ----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 ----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 ----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                                ++.|+|||.+....++.++|+||+|+++++|++|..||.....   .. ...   .     .....  ..
T Consensus       156 ~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~---~~-~~~---~-----~~~~~--~~  221 (258)
T cd08215         156 TVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENL---LE-LAL---K-----ILKGQ--YP  221 (258)
T ss_pred             CcceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcH---HH-HHH---H-----HhcCC--CC
Confidence                      3469999998888889999999999999999999999864321   00 000   0     00000  11


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ..+...+..+.+++.+||+.+|++|||+.++++.
T Consensus       222 ~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  255 (258)
T cd08215         222 PIPSQYSSELRNLVSSLLQKDPEERPSIAQILQS  255 (258)
T ss_pred             CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            2344556789999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=9.1e-35  Score=251.52  Aligned_cols=247  Identities=17%  Similarity=0.172  Sum_probs=180.2

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeC--Cc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--SK   87 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~   87 (274)
                      ..++|...+.+|.|.+  |.||+|..      .++|.....    .....+.+|+.++++++|+||+++++++.+.  +.
T Consensus         5 ~~~~y~~~~~ig~g~~--~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (309)
T cd07845           5 SVTEFEKLNRIGEGTY--GIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDS   82 (309)
T ss_pred             cccceeEeeeeeecCC--EEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCe
Confidence            3467888999999999  99999821      122222211    1123456899999999999999999998754  56


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+. ++|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+..
T Consensus        83 ~~lv~e~~~-~~l~~~l~~-~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~kL~dfg~~~~  157 (309)
T cd07845          83 IFLVMEYCE-QDLASLLDN-MPTPFSESQVKCLMLQLLRGLQYLHEN---FIIHRDLKVSNLLLTDKGCLKIADFGLART  157 (309)
T ss_pred             EEEEEecCC-CCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccceeee
Confidence            899999997 589999876 335699999999999999999999999   999999999999999999999999999875


Q ss_pred             cC-----------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH-------HHHHHh
Q 048314          168 LS-----------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW-------VYKCFI  228 (274)
Q Consensus       168 ~~-----------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~-------~~~~~~  228 (274)
                      ..           +..|+|||.+.+ ..++.++|+||+|+++|+|++|..||...............       .+....
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
T cd07845         158 YGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFS  237 (309)
T ss_pred             cCCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhh
Confidence            43           345999998865 45789999999999999999999999643111110001000       000000


Q ss_pred             hhhh-hhh-hcCCc------cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          229 NREL-NKL-VRGTE------VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       229 ~~~~-~~~-~~~~~------~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .... ... .....      .....+..+.+++.+||+.||++|||+.++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h  290 (309)
T cd07845         238 DLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALES  290 (309)
T ss_pred             cccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            0000 000 00000      001135678899999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-34  Score=236.71  Aligned_cols=238  Identities=14%  Similarity=0.112  Sum_probs=186.5

Q ss_pred             Hhhhccc-cccCCCCCCCCcchhHH------HHHHHHHhcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEe----CCc
Q 048314           20 KLRNFCR-SSLNDRNSPRSKSVWSC------MRALMATVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMR----GSK   87 (274)
Q Consensus        20 ~~~~f~~-~~~~g~g~~~~g~vy~~------~~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~----~~~   87 (274)
                      .+++|+. ..++|.|-.  |.|..|      .+-+.|.+.   +....++|++.--+.. |||||++++++..    ..-
T Consensus        59 itedY~is~qvLG~Gin--GkV~~C~~k~T~ekfALKvL~---Ds~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkc  133 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGIN--GKVVQCVHKRTQEKFALKVLL---DSPKARREVELHWMASGHPHIVSIIDVYENSYQGRKC  133 (400)
T ss_pred             chhhheehhhhhccccC--CceEEEEeccchhhhHHHHHh---cCHHHHhHhhhhhhhcCCCceEEeehhhhhhccCcee
Confidence            3566665 467899988  999887      333444444   3345677887665554 9999999999854    345


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEecccc
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGL  164 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~d~g~  164 (274)
                      +.+|||.|.||.|.+.++++....+++.+.-.+..||+.|+.|||+.   +|-||||||+|+|...   +-.+||+|||+
T Consensus       134 LLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~---nIAHRDlKpENLLyt~t~~na~lKLtDfGF  210 (400)
T KOG0604|consen  134 LLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSM---NIAHRDLKPENLLYTTTSPNAPLKLTDFGF  210 (400)
T ss_pred             eEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhc---chhhccCChhheeeecCCCCcceEeccccc
Confidence            78999999999999999987777899999999999999999999999   9999999999999864   56789999999


Q ss_pred             ceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          165 AKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       165 ~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      ++...          |+.|.|||++....|+..+|+||+||++|-|++|.+||.......    +..-+...+..+   .
T Consensus       211 AK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~a----ispgMk~rI~~g---q  283 (400)
T KOG0604|consen  211 AKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA----ISPGMKRRIRTG---Q  283 (400)
T ss_pred             ccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCcc----CChhHHhHhhcc---C
Confidence            98644          678999999999999999999999999999999999997432211    111111111111   1


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +-.|.+-..+.++..+++|+.+|.-+|++|.|+.++++
T Consensus       284 y~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~  321 (400)
T KOG0604|consen  284 YEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMD  321 (400)
T ss_pred             ccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence            22233445577889999999999999999999999875

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-35  Score=263.03  Aligned_cols=188  Identities=15%  Similarity=0.164  Sum_probs=158.1

Q ss_pred             hhccccccCCCCCCCCcchhHH------HHHHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeC------C
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC------MRALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG------S   86 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~   86 (274)
                      ..+.....+|.|+|  |.||+|      ...++|..+.   ....+...+|+++|++++|||||+++++-.+.      .
T Consensus        13 y~W~~~e~LG~Ga~--g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~   90 (732)
T KOG4250|consen   13 YLWEMDERLGKGAF--GNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTR   90 (732)
T ss_pred             cceeehhhhcCCcc--ceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccc
Confidence            34556788999999  999999      2333443333   34566778999999999999999999986543      3


Q ss_pred             cceEEEEeCCCCCHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC----CCcEEEec
Q 048314           87 KPSTEAALDLPWDLAYIIFCSA-ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE----FWTAKISD  161 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~----~~~~kl~d  161 (274)
                      .+.+|||||.+|||...|.+-. ..+|++.+.+.++.+++.||.|||++   +|+||||||.||++..    ....||+|
T Consensus        91 ~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn---~IvHRDlKP~NIvl~~Gedgq~IyKLtD  167 (732)
T KOG4250|consen   91 LPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLREN---GIVHRDLKPGNIVLQIGEDGQSIYKLTD  167 (732)
T ss_pred             cceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHc---CceeccCCCCcEEEeecCCCceEEeeec
Confidence            6799999999999999998742 24699999999999999999999999   9999999999999742    23469999


Q ss_pred             cccceecC----------CCCcCCCcccc-cCCCccccceeehhHhHHHHhhcCCCccccCCCh
Q 048314          162 FGLAKLLS----------DKGCMAPECYK-RTPISVKADVYGYGIVLLETICCWENMEIDASKP  214 (274)
Q Consensus       162 ~g~~~~~~----------~~~~~ape~~~-~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~  214 (274)
                      ||.++...          |..|++||++. ...|+..+|.|||||++|+++||..||.+...+.
T Consensus       168 fG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk  231 (732)
T KOG4250|consen  168 FGAARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGPK  231 (732)
T ss_pred             ccccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCcc
Confidence            99998544          78899999998 5889999999999999999999999998876554

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=6.2e-35  Score=249.08  Aligned_cols=241  Identities=15%  Similarity=0.091  Sum_probs=178.1

Q ss_pred             cccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeC--CcceEEE
Q 048314           25 CRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--SKPSTEA   92 (274)
Q Consensus        25 ~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~   92 (274)
                      .....+|.|++  |.||+|..      .++|....    ......+.+|+.++++++|||++++++++.+.  +..++|+
T Consensus         2 ~~~~~l~~g~~--~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   79 (287)
T cd07840           2 EKIAQIGEGTY--GQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVF   79 (287)
T ss_pred             eeeEEeccCCC--eEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEe
Confidence            34567899999  99999821      11222221    12334577899999999999999999999887  8899999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++ +|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+....   
T Consensus        80 e~~~~-~l~~~~~~-~~~~~~~~~~~~i~~~i~~al~~LH~~---~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~  154 (287)
T cd07840          80 EYMDH-DLTGLLDS-PEVKFTESQIKCYMKQLLEGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPYTKRN  154 (287)
T ss_pred             ccccc-cHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEEcCCCCEEEccccceeeccCCC
Confidence            99974 89999876 335799999999999999999999999   99999999999999999999999999887543   


Q ss_pred             ---------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh-----
Q 048314          170 ---------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK-----  234 (274)
Q Consensus       170 ---------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  234 (274)
                               +..|+|||.+.+ ..++.++|+||||+++|+|++|..||...........+...... ........     
T Consensus       155 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  233 (287)
T cd07840         155 SADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGS-PTDENWPGVSKLP  233 (287)
T ss_pred             cccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC-Cchhhccccccch
Confidence                     345999997764 45789999999999999999999999754221111111000000 00000000     


Q ss_pred             ---hhcCC---------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          235 ---LVRGT---------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       235 ---~~~~~---------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                         .....         .....++..+.+++.+||+.||++|||+.++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  284 (287)
T cd07840         234 WFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQH  284 (287)
T ss_pred             hhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence               00000         0111136788999999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=8.7e-35  Score=248.23  Aligned_cols=243  Identities=17%  Similarity=0.164  Sum_probs=180.6

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      +|.....+|.|++  |.||+|..      .++|....   ....+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus         1 ~y~~~~~l~~g~~--~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   78 (284)
T cd07836           1 NFKQLEKLGEGTY--ATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFE   78 (284)
T ss_pred             CceEeeeeccCCc--eEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEe
Confidence            4667788999999  99999832      12222111   1223456789999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           94 LDLPWDLAYIIFCSA-ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      |+++ +|.+++.... ...+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.++++|||.+....   
T Consensus        79 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~  154 (284)
T cd07836          79 YMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN---RVLHRDLKPQNLLINKRGELKLADFGLARAFGIPV  154 (284)
T ss_pred             cCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCc
Confidence            9984 8999887532 24689999999999999999999999   99999999999999999999999999886432   


Q ss_pred             --------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh------hh
Q 048314          170 --------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL------NK  234 (274)
Q Consensus       170 --------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  234 (274)
                              +..|++||.+... .++.++|+||||+++|++++|..||................. .......      ..
T Consensus       155 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  233 (284)
T cd07836         155 NTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMG-TPTESTWPGISQLPE  233 (284)
T ss_pred             cccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhC-CCChhhHHHHhcCch
Confidence                    4569999987654 468899999999999999999999964422111111110000 0000000      00


Q ss_pred             hhcC---------CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          235 LVRG---------TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       235 ~~~~---------~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....         .......+..+.+++.+||+.||.+|||++++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         234 YKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             hcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            0000         0011233567889999999999999999999986

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-34  Score=242.68  Aligned_cols=229  Identities=18%  Similarity=0.195  Sum_probs=183.3

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      +|.....+|.|.+  |.+|++..      .+++.....    ...+.+.+|++++++++|||++++++++.+.+..++++
T Consensus         1 ~y~~~~~l~~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~   78 (254)
T cd06627           1 NYQLGDLIGRGAF--GVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIIL   78 (254)
T ss_pred             CceeeeEEcccCC--eEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEE
Confidence            3566788999999  99998721      111111111    12345789999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++++|.+++..  ...+++..+..++.|++.||.+||+.   +++|+|++|+||+++.++.++|+|||.+....   
T Consensus        79 e~~~~~~L~~~~~~--~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  153 (254)
T cd06627          79 EYAENGSLRQIIKK--FGPFPESLVAVYVYQVLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVS  153 (254)
T ss_pred             ecCCCCcHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEECCCCCEEEeccccceecCCCc
Confidence            99999999999986  36799999999999999999999999   99999999999999999999999999887543   


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                              +..|++||.......+.++|+||+|+++++|++|..||....   ......    .. ...      .....
T Consensus       154 ~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~---~~~~~~----~~-~~~------~~~~~  219 (254)
T cd06627         154 KDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLN---PMAALF----RI-VQD------DHPPL  219 (254)
T ss_pred             ccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCcc---HHHHHH----HH-hcc------CCCCC
Confidence                    456999999887778899999999999999999999986431   110000    00 000      01123


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +...+..+.+++.+||+.+|++|||+.+++.
T Consensus       220 ~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         220 PEGISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             CCCCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence            4455678999999999999999999999975

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=5.4e-35  Score=255.75  Aligned_cols=245  Identities=17%  Similarity=0.176  Sum_probs=179.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEe----CC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR----GS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~   86 (274)
                      .++|.....+|.|++  |.||+|..      .++|....    ....+.+.+|+.++++++||||+++++++..    ..
T Consensus         4 ~~~y~~~~~lg~g~~--g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   81 (334)
T cd07855           4 GSRYKPIENIGSGAY--GVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFK   81 (334)
T ss_pred             hhceeeeeeeecCCC--eEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCc
Confidence            467888899999999  99998821      11121111    1234556789999999999999999998753    35


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++||||+. ++|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+.
T Consensus        82 ~~~lv~e~~~-~~l~~~~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~~~  155 (334)
T cd07855          82 DVYVVMDLME-SDLHHIIHS--DQPLTEEHIRYFLYQLLRGLKYIHSA---NVIHRDLKPSNLLVNEDCELRIGDFGMAR  155 (334)
T ss_pred             eEEEEEehhh-hhHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEecccccce
Confidence            6899999995 689999875  35599999999999999999999999   99999999999999999999999999986


Q ss_pred             ecC---------------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH-------H
Q 048314          167 LLS---------------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW-------V  223 (274)
Q Consensus       167 ~~~---------------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~-------~  223 (274)
                      ...               +..|+|||.+.. ..++.++|+||||+++|+|++|+.||...............       .
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~  235 (334)
T cd07855         156 GLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEV  235 (334)
T ss_pred             eecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHh
Confidence            432               446899998765 45789999999999999999999999643211110000000       0


Q ss_pred             HHHHhhhhhhhhh---cCC-cc-----CHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          224 YKCFINRELNKLV---RGT-EV-----DKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       224 ~~~~~~~~~~~~~---~~~-~~-----~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .............   ... ..     ....+..+.+++.+||+.||++|||+++++..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  294 (334)
T cd07855         236 LNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQH  294 (334)
T ss_pred             hhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            0000000011100   000 11     12346789999999999999999999999863

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=4.1e-35  Score=251.95  Aligned_cols=226  Identities=18%  Similarity=0.141  Sum_probs=177.1

Q ss_pred             cccCCCCCCCCcchhHHHH------HHHHHhc--CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCC
Q 048314           27 SSLNDRNSPRSKSVWSCMR------ALMATVN--SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPW   98 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~------~~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g   98 (274)
                      -..+|.|++  |.||++..      .++|...  .....+.+.+|+.++++++|+||+++++.+...+..+++|||++++
T Consensus        25 ~~~lg~g~~--g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  102 (292)
T cd06657          25 FIKIGEGST--GIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGG  102 (292)
T ss_pred             HHHcCCCCC--eEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCC
Confidence            356999999  99998711      1111111  1123345778999999999999999999999999999999999999


Q ss_pred             CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---------
Q 048314           99 DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---------  169 (274)
Q Consensus        99 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---------  169 (274)
                      +|.+++..   ..+++.....++.|++.|++|||+.   +++|+|++|+||+++.++.++++|||.+....         
T Consensus       103 ~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~---givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~  176 (292)
T cd06657         103 ALTDIVTH---TRMNEEQIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSL  176 (292)
T ss_pred             cHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEcccccceeccccccccccc
Confidence            99998854   4689999999999999999999999   99999999999999999999999999875432         


Q ss_pred             --CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHH
Q 048314          170 --DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLE  247 (274)
Q Consensus       170 --~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (274)
                        +..|++||.+....++.++|+||+|+++|+|++|..||.....   .. ...    ... .......   ......+.
T Consensus       177 ~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~---~~-~~~----~~~-~~~~~~~---~~~~~~~~  244 (292)
T cd06657         177 VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP---LK-AMK----MIR-DNLPPKL---KNLHKVSP  244 (292)
T ss_pred             ccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH---HH-HHH----HHH-hhCCccc---CCcccCCH
Confidence              4569999998887889999999999999999999999864311   10 000    000 0011000   11223456


Q ss_pred             HHHHHHHHhhccCCCCCCChhhHHh
Q 048314          248 NLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       248 ~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+.+++.+||+.||.+|||+.++++
T Consensus       245 ~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         245 SLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             HHHHHHHHHHhCCcccCcCHHHHhc
Confidence            7889999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=9.6e-35  Score=253.67  Aligned_cols=247  Identities=17%  Similarity=0.178  Sum_probs=182.2

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHH-------HHHHHH---hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEe-C
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCM-------RALMAT---VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR-G   85 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~~~---~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~   85 (274)
                      +-..+++|.....+|.|++  |.||++.       +++|+.   .......+.+..|+.++++++||||+++++++.. .
T Consensus         5 ~~~~~~~y~~~~~ig~g~~--g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   82 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAF--GLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPL   82 (328)
T ss_pred             eeccccceEEEEeecccCC--eEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCC
Confidence            3446788999999999999  9999882       122211   1112234567799999999999999999999865 5


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      ...++++||+ +++|.+++..   ..+++.....++.|++.||.|||+.   +++|+|++|+||+++.++.++++|||.+
T Consensus        83 ~~~~lv~e~~-~~~L~~~~~~---~~~~~~~~~~~~~ql~~aL~~LH~~---~iiH~dl~p~Nili~~~~~~~l~dfg~~  155 (328)
T cd07856          83 EDIYFVTELL-GTDLHRLLTS---RPLEKQFIQYFLYQILRGLKYVHSA---GVVHRDLKPSNILINENCDLKICDFGLA  155 (328)
T ss_pred             CcEEEEeehh-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEeECCCCCEEeCccccc
Confidence            6789999998 4689988864   4688999999999999999999999   9999999999999999999999999988


Q ss_pred             eecC--------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH-------HHHhh
Q 048314          166 KLLS--------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY-------KCFIN  229 (274)
Q Consensus       166 ~~~~--------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~-------~~~~~  229 (274)
                      ....        +..|++||.+.. ..++.++|+||||+++|+|++|..||...........+.+...       .....
T Consensus       156 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (328)
T cd07856         156 RIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICS  235 (328)
T ss_pred             cccCCCcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccc
Confidence            6432        456999998765 4678999999999999999999999964321110001111000       00000


Q ss_pred             hhhhhh---h-cCCccC-----HHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          230 RELNKL---V-RGTEVD-----KKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       230 ~~~~~~---~-~~~~~~-----~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....+.   . .....+     ...+..+.+++.+||+.+|++|||+.+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~  287 (328)
T cd07856         236 ENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALA  287 (328)
T ss_pred             hhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            000000   0 000111     123578999999999999999999999975

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=9.5e-35  Score=271.36  Aligned_cols=232  Identities=18%  Similarity=0.203  Sum_probs=185.4

Q ss_pred             cccccCCCCCCCCcchhHHHH-------------HHHHHhc---CCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCc
Q 048314           25 CRSSLNDRNSPRSKSVWSCMR-------------ALMATVN---SPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSK   87 (274)
Q Consensus        25 ~~~~~~g~g~~~~g~vy~~~~-------------~~~~~~~---~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~   87 (274)
                      .....+|.|.|  |.|++|..             +++|...   ...+.+.+..|+++|..+- |+||+.++|+|..++.
T Consensus       299 ~~~~~lg~g~f--G~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~  376 (609)
T KOG0200|consen  299 KLGKYLGEGAF--GQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGP  376 (609)
T ss_pred             cccceeecccc--cceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCc
Confidence            33458999999  99999810             1111111   1134566789999999986 9999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCC------------C--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC
Q 048314           88 PSTEAALDLPWDLAYIIFCSA------------E--RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE  153 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~------------~--~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~  153 (274)
                      .++|+||+.+|+|.+|+...+            .  ..++....+.++.||+.|++||++.   +++||||-.+|||+..
T Consensus       377 ~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~---~~vHRDLAaRNVLi~~  453 (609)
T KOG0200|consen  377 LYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV---PCVHRDLAARNVLITK  453 (609)
T ss_pred             eEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC---CccchhhhhhhEEecC
Confidence            999999999999999998744            0  2389999999999999999999999   9999999999999999


Q ss_pred             CCcEEEeccccceecC--------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHH
Q 048314          154 FWTAKISDFGLAKLLS--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEII  218 (274)
Q Consensus       154 ~~~~kl~d~g~~~~~~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~  218 (274)
                      +..+|++|||+++...              ...|||||.+....|+.++||||||++|||+++ |..||... ....+  
T Consensus       454 ~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~-~~~~~--  530 (609)
T KOG0200|consen  454 NKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGI-PPTEE--  530 (609)
T ss_pred             CCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCC-CcHHH--
Confidence            9999999999998432              124999999999999999999999999999987 67887532 10111  


Q ss_pred             HHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          219 LTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +..    .+.++.      ..+.|..+..++.++|+.||+.+|++||++.++.+.|
T Consensus       531 l~~----~l~~G~------r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~  576 (609)
T KOG0200|consen  531 LLE----FLKEGN------RMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFF  576 (609)
T ss_pred             HHH----HHhcCC------CCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHH
Confidence            111    111111      1147788899999999999999999999999998753

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=6.3e-35  Score=248.68  Aligned_cols=241  Identities=15%  Similarity=0.157  Sum_probs=179.7

Q ss_pred             cccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           25 CRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        25 ~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      ...+.+|.|++  |.||++..      .+++.....    ...+.+.+|+.++++++|+||+++++++.+++..++++||
T Consensus         2 ~~~~~i~~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   79 (283)
T cd05118           2 QKLGKIGEGTY--GVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEF   79 (283)
T ss_pred             ccceeeecCCC--ceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEec
Confidence            44577999999  99999832      112222111    1234567899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      +++ +|.+++.. ....+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+....     
T Consensus        80 ~~~-~l~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~  154 (283)
T cd05118          80 MDT-DLYKLIKD-RQRGLPESLIKSYLYQLLQGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRP  154 (283)
T ss_pred             cCC-CHHHHHHh-hcccCCHHHHHHHHHHHHHHHHHHHHC---CeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCccc
Confidence            975 89988876 336799999999999999999999999   99999999999999999999999999876443     


Q ss_pred             ------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHH-HHHH-------HHHHHhh---hh
Q 048314          170 ------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEII-LTNW-------VYKCFIN---RE  231 (274)
Q Consensus       170 ------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~-~~~~-------~~~~~~~---~~  231 (274)
                            +..|+|||.+... .++.++|+||+|+++|+|++|+.||..... ..... ....       .+....+   ..
T Consensus       155 ~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (283)
T cd05118         155 YTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSE-IDQLFKIFRTLGTPDPEVWPKFTSLARNY  233 (283)
T ss_pred             ccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHcCCCchHhcccchhhhhhh
Confidence                  3458999998766 688999999999999999999999854321 11100 0000       0000000   00


Q ss_pred             hhhhhcC-----CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          232 LNKLVRG-----TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       232 ~~~~~~~-----~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .....+.     .......+..+.+++.+||+.||.+||++.+++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~  280 (283)
T cd05118         234 KFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAH  280 (283)
T ss_pred             hhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhC
Confidence            0000000     01223456789999999999999999999999863

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=9.6e-35  Score=251.43  Aligned_cols=233  Identities=17%  Similarity=0.147  Sum_probs=180.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcC-----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS-----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .+.|...+.+|.|++  |.||+|..      .+++....     ....+++.+|++++++++|+|++++++++.+....+
T Consensus        14 ~~~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   91 (308)
T cd06634          14 EKLFSDLREIGHGSF--GAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAW   91 (308)
T ss_pred             HHHHHHHHheeeCCC--EEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeE
Confidence            445777788999999  99998821      11222211     112234678999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +||||+. |++.+.+.. ....+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.++++|||.+....
T Consensus        92 lv~e~~~-~~l~~~~~~-~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  166 (308)
T cd06634          92 LVMEYCL-GSASDLLEV-HKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMA  166 (308)
T ss_pred             EEEEccC-CCHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHhEEECCCCcEEECCcccceeec
Confidence            9999996 688888765 345689999999999999999999999   99999999999999999999999999886533


Q ss_pred             -------CCCcCCCcccc---cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 -------DKGCMAPECYK---RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 -------~~~~~ape~~~---~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                             +..|+|||.+.   ...++.++||||||+++|+|++|..||......   ....    .. ...     ..+.
T Consensus       167 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~---~~~~----~~-~~~-----~~~~  233 (308)
T cd06634         167 PANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM---SALY----HI-AQN-----ESPA  233 (308)
T ss_pred             CcccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHH---HHHH----HH-hhc-----CCCC
Confidence                   56799999874   345788999999999999999999998533110   0000    00 000     0111


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ..+...+..+.+++.+||+.+|++|||+.++++.
T Consensus       234 ~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~  267 (308)
T cd06634         234 LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH  267 (308)
T ss_pred             cCcccccHHHHHHHHHHhhCCcccCCCHHHHhhC
Confidence            1233456778999999999999999999999863

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-34  Score=243.04  Aligned_cols=225  Identities=17%  Similarity=0.137  Sum_probs=170.6

Q ss_pred             ccCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHH-hcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIV-SRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l-~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.+|.|++  |.||++..      .++|.....     .....+..|..++ ...+|+|++++++++.+++..++|+||+
T Consensus         2 ~~l~~g~~--~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   79 (260)
T cd05611           2 KPISKGAF--GSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYL   79 (260)
T ss_pred             ccCCcCCC--eeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEecc
Confidence            35899999  99998822      112221111     1112234454444 4568999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------  168 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-------  168 (274)
                      ++++|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++...       
T Consensus        80 ~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~  154 (260)
T cd05611          80 NGGDCASLIKT--LGGLPEDWAKQYIAEVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFV  154 (260)
T ss_pred             CCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEeecccceeccccccCC
Confidence            99999999975  35689999999999999999999999   9999999999999999999999999987643       


Q ss_pred             CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHH
Q 048314          169 SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLEN  248 (274)
Q Consensus       169 ~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (274)
                      ++..|++||.+.+..++.++|+||||+++|+|++|..||.....   ....     .......   ...+.......+..
T Consensus       155 ~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~---~~~~-----~~~~~~~---~~~~~~~~~~~~~~  223 (260)
T cd05611         155 GTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETP---DAVF-----DNILSRR---INWPEEVKEFCSPE  223 (260)
T ss_pred             CCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCH---HHHH-----HHHHhcc---cCCCCcccccCCHH
Confidence            35679999999887789999999999999999999999964311   1100     1111111   00111223345678


Q ss_pred             HHHHHHHhhccCCCCCCChhhH
Q 048314          249 LVKVGLWCVQDEPALRPSMKCV  270 (274)
Q Consensus       249 ~~~li~~cl~~dp~~Rps~~ev  270 (274)
                      +.+++.+||+.||++|||+.++
T Consensus       224 ~~~~i~~~l~~~p~~R~~~~~~  245 (260)
T cd05611         224 AVDLINRLLCMDPAKRLGANGY  245 (260)
T ss_pred             HHHHHHHHccCCHHHccCCCcH
Confidence            9999999999999999977533

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-34  Score=245.73  Aligned_cols=244  Identities=15%  Similarity=0.149  Sum_probs=178.7

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhcCC-C--CCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceEEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-Y--SPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-~--~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      |.....+|.|++  |.||+|..      .++|..... .  ......+|+..+++++ |+||+++++++.+++..++|||
T Consensus         1 y~~~~~ig~g~~--g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   78 (283)
T cd07830           1 YKVIKQLGDGTF--GSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFE   78 (283)
T ss_pred             CeeheeeccCCc--eEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEe
Confidence            344577999999  99999832      112211111 1  1223457999999999 9999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+ +|+|.+++.......+++..+..++.|++.+|.|||+.   +++|+||+|.||+++.++.++|+|||.+....    
T Consensus        79 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~  154 (283)
T cd07830          79 YM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPP  154 (283)
T ss_pred             cC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCCEEEeecccceeccCCCC
Confidence            99 78999999874445789999999999999999999999   99999999999999999999999999986543    


Q ss_pred             ------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHH---------HHHHHHhhhhhh
Q 048314          170 ------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN---------WVYKCFINRELN  233 (274)
Q Consensus       170 ------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~---------~~~~~~~~~~~~  233 (274)
                            +..|+|||.+.. ..++.++|+||||+++++|++|..||..............         |...........
T Consensus       155 ~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (283)
T cd07830         155 YTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLG  234 (283)
T ss_pred             cCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhcccc
Confidence                  446899998754 4578999999999999999999999864421111110000         000000000000


Q ss_pred             hhhcCC------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          234 KLVRGT------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       234 ~~~~~~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ..+...      ......+..+.+++++||+.||++|||+.|+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~  280 (283)
T cd07830         235 FRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQH  280 (283)
T ss_pred             ccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhC
Confidence            000000      0011124679999999999999999999999864

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1e-34  Score=254.87  Aligned_cols=248  Identities=16%  Similarity=0.152  Sum_probs=180.3

Q ss_pred             hhhhhHHHHh----hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccce
Q 048314           12 IARSSLCTKL----RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIE   77 (274)
Q Consensus        12 ~~~~~l~~~~----~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~   77 (274)
                      |++.++..+.    ++|.....+|.|++  |.||+|..      .++|.....    .....+.+|+.++++++||||++
T Consensus         1 ~~~~~~~~~~~~~~~~y~~~~~ig~g~~--g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~   78 (342)
T cd07879           1 FYREEVNKTVWELPERYTSLKQVGSGAY--GSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIG   78 (342)
T ss_pred             CchhhhhhhhhccccceEEEEEeeecCC--eEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccc
Confidence            3455555553    78888999999999  99998821      112222211    12234678999999999999999


Q ss_pred             EeEEEEeCC------cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 048314           78 VSSVAMRGS------KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM  151 (274)
Q Consensus        78 l~~~~~~~~------~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~  151 (274)
                      +++++....      ..++|+||+. .+|.+++.    ..+++..+..++.|++.||+|||+.   +++||||+|+||++
T Consensus        79 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dlkp~NIll  150 (342)
T cd07879          79 LLDVFTSAVSGDEFQDFYLVMPYMQ-TDLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHSA---GIIHRDLKPGNLAV  150 (342)
T ss_pred             hhheecccccCCCCceEEEEecccc-cCHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEE
Confidence            999986543      4599999986 47777653    3689999999999999999999999   99999999999999


Q ss_pred             cCCCcEEEeccccceecC--------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH
Q 048314          152 DEFWTAKISDFGLAKLLS--------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW  222 (274)
Q Consensus       152 ~~~~~~kl~d~g~~~~~~--------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~  222 (274)
                      +.++.++++|||++....        +..|+|||.+.. ..++.++|+||||+++|||++|+.||.....   ...+...
T Consensus       151 ~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~---~~~~~~~  227 (342)
T cd07879         151 NEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY---LDQLTQI  227 (342)
T ss_pred             CCCCCEEEeeCCCCcCCCCCCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHH
Confidence            999999999999986532        456999998876 4578899999999999999999999974311   1111110


Q ss_pred             HH----------HHHhhhhhhhhhc-----CC-c---cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          223 VY----------KCFINRELNKLVR-----GT-E---VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       223 ~~----------~~~~~~~~~~~~~-----~~-~---~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..          .............     +. .   .....+..+.+++.+||+.||++|||+++++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~  296 (342)
T cd07879         228 LKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALE  296 (342)
T ss_pred             HHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            00          0000000000000     00 0   00123467889999999999999999999985

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=2.3e-34  Score=251.75  Aligned_cols=235  Identities=15%  Similarity=0.113  Sum_probs=176.2

Q ss_pred             cccCCCCCCCCcchhHHHH------HHHHHhcCCCC----------------CCcHHHHHHHHhcCCCCccceEeEEEEe
Q 048314           27 SSLNDRNSPRSKSVWSCMR------ALMATVNSPYS----------------PSRPLTLTSIVSRVSWTTDIEVSSVAMR   84 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~----------------~~~~~~e~~~l~~l~h~niv~l~~~~~~   84 (274)
                      .+.+|.|++  |.||++..      .++|.......                ...+.+|++++++++||||+++++++..
T Consensus        14 ~~~ig~G~~--g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   91 (335)
T PTZ00024         14 GAHLGEGTY--GKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVE   91 (335)
T ss_pred             hhcccCCCc--eeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEec
Confidence            577999999  99999821      11121111100                1146789999999999999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      .+..++||||+. |+|.+++..  ...+++.....++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.
T Consensus        92 ~~~~~lv~e~~~-~~l~~~l~~--~~~~~~~~~~~~~~ql~~aL~~LH~~---~i~H~dl~~~nill~~~~~~kl~dfg~  165 (335)
T PTZ00024         92 GDFINLVMDIMA-SDLKKVVDR--KIRLTESQVKCILLQILNGLNVLHKW---YFMHRDLSPANIFINSKGICKIADFGL  165 (335)
T ss_pred             CCcEEEEEeccc-cCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHeEECCCCCEEECCccc
Confidence            999999999997 699999975  45689999999999999999999999   999999999999999999999999998


Q ss_pred             ceecC-------------------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHH
Q 048314          165 AKLLS-------------------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEII  218 (274)
Q Consensus       165 ~~~~~-------------------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~  218 (274)
                      +....                         +..|+|||.+.+. .++.++|+||||+++|+|++|..||.......    
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~----  241 (335)
T PTZ00024        166 ARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEID----  241 (335)
T ss_pred             eeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH----
Confidence            86543                         3469999988654 46889999999999999999999996442111    


Q ss_pred             HHHHHHHHHhhhh---hhh--------hhcC---C---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          219 LTNWVYKCFINRE---LNK--------LVRG---T---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       219 ~~~~~~~~~~~~~---~~~--------~~~~---~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .............   ...        ....   .   ......+..+.+++..||+.||++|||++|++..
T Consensus       242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~  313 (335)
T PTZ00024        242 QLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKH  313 (335)
T ss_pred             HHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcC
Confidence            1111111000000   000        0000   0   0112235678999999999999999999999863

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=2.1e-34  Score=246.65  Aligned_cols=231  Identities=16%  Similarity=0.125  Sum_probs=178.4

Q ss_pred             ccccccCCCCCCCCcchhHHHHH-------------HHH-H-hcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCc
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMRA-------------LMA-T-VNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSK   87 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~~-------------~~~-~-~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~   87 (274)
                      |.....+|.|++  |.||++...             .++ . .......+.+.+|+.++.+++ ||||+++++.+..+..
T Consensus         2 ~~~~~~ig~G~~--~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~   79 (288)
T cd05583           2 FELLRVLGTGAY--GKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTK   79 (288)
T ss_pred             ceEEEEeccCCC--ceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCE
Confidence            556778999999  999976211             111 1 111123456779999999994 9999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++|+|.+++..  ...+++.....++.|++.||.|||+.   +++|+||+|.||+++.++.++++|||++..
T Consensus        80 ~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~ql~~~l~~lH~~---~~~H~dl~p~nil~~~~~~~~l~dfg~~~~  154 (288)
T cd05583          80 LHLILDYVNGGELFTHLYQ--REHFTESEVRVYIAEIVLALDHLHQL---GIIYRDIKLENILLDSEGHVVLTDFGLSKE  154 (288)
T ss_pred             EEEEEecCCCCcHHHHHhh--cCCcCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEEECccccc
Confidence            9999999999999999975  35689999999999999999999999   999999999999999999999999998764


Q ss_pred             c------------CCCCcCCCcccccCC--CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          168 L------------SDKGCMAPECYKRTP--ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       168 ~------------~~~~~~ape~~~~~~--~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      .            ++..|++||.+....  .+.++|+||||+++++|++|..||...........+..   .      ..
T Consensus       155 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~---~------~~  225 (288)
T cd05583         155 FLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISR---R------IL  225 (288)
T ss_pred             cccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHH---H------HH
Confidence            2            245699999887654  67899999999999999999999964322111111110   0      00


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .  .....+...+..+.+++.+||+.||++|||+.++.+
T Consensus       226 ~--~~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~  262 (288)
T cd05583         226 K--SKPPFPKTMSAEARDFIQKLLEKDPKKRLGANGADE  262 (288)
T ss_pred             c--cCCCCCcccCHHHHHHHHHHhcCCHhhccCcchHHH
Confidence            0  011233345567899999999999999999776644

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=2.5e-34  Score=245.28  Aligned_cols=226  Identities=21%  Similarity=0.191  Sum_probs=172.3

Q ss_pred             cCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHH---HHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           29 LNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLT---SIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~---~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      ++|.|+|  |.||++..      .++|.....     .....+..|.   ..++...||||+++++.+.+.+..++||||
T Consensus         1 ~ig~g~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~   78 (278)
T cd05606           1 IIGRGGF--GEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDL   78 (278)
T ss_pred             CcccCCC--eEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEec
Confidence            4799999  99997621      112211111     1112234443   344456799999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec------
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL------  168 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~------  168 (274)
                      +++|+|.+++..  ...+++..++.++.|++.|+.|||+.   +++|+|++|+||+++.++.++|+|||.+...      
T Consensus        79 ~~g~~L~~~l~~--~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~~  153 (278)
T cd05606          79 MNGGDLHYHLSQ--HGVFSEAEMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH  153 (278)
T ss_pred             CCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCCCCHHHEEECCCCCEEEccCcCccccCccCCc
Confidence            999999999875  45799999999999999999999999   9999999999999999999999999987643      


Q ss_pred             ---CCCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          169 ---SDKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       169 ---~~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                         ++..|+|||.+..+ .++.++|+||+|+++|+|++|..||.......... ..    ....       ......+..
T Consensus       154 ~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~-~~----~~~~-------~~~~~~~~~  221 (278)
T cd05606         154 ASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHE-ID----RMTL-------TMAVELPDS  221 (278)
T ss_pred             CcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHH-HH----HHhh-------ccCCCCCCc
Confidence               35679999998754 57899999999999999999999996442211110 00    0000       001123444


Q ss_pred             HHHHHHHHHHHhhccCCCCCC-----ChhhHHhh
Q 048314          245 NLENLVKVGLWCVQDEPALRP-----SMKCVVMM  273 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rp-----s~~evl~~  273 (274)
                      .+..+.+++.+||..||.+||     ++.++++.
T Consensus       222 ~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~  255 (278)
T cd05606         222 FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEH  255 (278)
T ss_pred             CCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhC
Confidence            567899999999999999999     99998863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.2e-34  Score=253.87  Aligned_cols=245  Identities=17%  Similarity=0.183  Sum_probs=179.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeC-----
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG-----   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----   85 (274)
                      .+.|.....+|.|++  |.||++..      .++|...    .......+.+|+.+++.++|+||+++++++...     
T Consensus         4 ~~~y~~~~~lg~G~~--~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~   81 (337)
T cd07858           4 DTKYVPIKPIGRGAY--GIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAF   81 (337)
T ss_pred             ccceeEEEEeccCCC--eEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheeccccccc
Confidence            356788889999999  99998821      1122111    122344567899999999999999999988643     


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      ...++++||+. ++|.+++..  ...+++.....++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++
T Consensus        82 ~~~~lv~e~~~-~~L~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~  155 (337)
T cd07858          82 NDVYIVYELMD-TDLHQIIRS--SQTLSDDHCQYFLYQLLRGLKYIHSA---NVLHRDLKPSNLLLNANCDLKICDFGLA  155 (337)
T ss_pred             CcEEEEEeCCC-CCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcCccc
Confidence            35799999996 689999875  45799999999999999999999999   9999999999999999999999999998


Q ss_pred             eecC-----------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH-------HHH
Q 048314          166 KLLS-----------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV-------YKC  226 (274)
Q Consensus       166 ~~~~-----------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~-------~~~  226 (274)
                      ....           +..|+|||.+.. ..++.++|+||||+++|+|++|..||................       ...
T Consensus       156 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (337)
T cd07858         156 RTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGF  235 (337)
T ss_pred             cccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhh
Confidence            6532           346999998765 457899999999999999999999996431110000000000       000


Q ss_pred             HhhhhhhhhhcC-------C--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          227 FINRELNKLVRG-------T--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       227 ~~~~~~~~~~~~-------~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .........++.       .  ......+..+.+++.+||+.||++|||++++++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h  291 (337)
T cd07858         236 IRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAH  291 (337)
T ss_pred             cCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcC
Confidence            000011111100       0  1112346778999999999999999999999863

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=2.8e-34  Score=251.53  Aligned_cols=244  Identities=18%  Similarity=0.182  Sum_probs=178.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-------HHHHHh---cCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeC--Cc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-------ALMATV---NSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRG--SK   87 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-------~~~~~~---~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~--~~   87 (274)
                      .++|.....+|.|++  |.||+|..       ++++..   ........+.+|+.+++++ +||||+++++++...  ..
T Consensus         6 ~~~y~~~~~lg~g~~--~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~   83 (337)
T cd07852           6 LRKYEILQKLGKGAY--GIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKD   83 (337)
T ss_pred             hhHHHHhHhhcCCCC--eeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCce
Confidence            567888889999999  99998821       112111   1223345567899999999 999999999998653  36


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+. ++|.+++..   ..+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+..
T Consensus        84 ~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~---~i~H~dl~p~nill~~~~~~kl~d~g~~~~  156 (337)
T cd07852          84 IYLVFEYME-TDLHAVIRA---NILEDVHKRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLARS  156 (337)
T ss_pred             EEEEecccc-cCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccchhc
Confidence            899999997 599999875   2789999999999999999999999   999999999999999999999999998864


Q ss_pred             cC----------------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH--------
Q 048314          168 LS----------------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW--------  222 (274)
Q Consensus       168 ~~----------------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~--------  222 (274)
                      ..                +..|+|||.+.. ..++.++|+||||+++|+|++|+.||...............        
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T cd07852         157 LSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAED  236 (337)
T ss_pred             cccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHH
Confidence            32                345999998754 45788999999999999999999999643111100000000        


Q ss_pred             ---HHHHHhhhhhhhhhcCC-----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          223 ---VYKCFINRELNKLVRGT-----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       223 ---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                         +................     ......+..+.+++.+||+.||++|||+.++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         237 IESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             HHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence               00000000000000000     1111246788999999999999999999999863

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=1.3e-34  Score=243.93  Aligned_cols=221  Identities=18%  Similarity=0.165  Sum_probs=174.3

Q ss_pred             CCCCCCCCcchhHHHH------HHHHHhcC-----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCC
Q 048314           30 NDRNSPRSKSVWSCMR------ALMATVNS-----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPW   98 (274)
Q Consensus        30 ~g~g~~~~g~vy~~~~------~~~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g   98 (274)
                      +|.|++  |.||++..      .++|....     ....+.+.+|+.++++++||||+++++.+.+....++++||++++
T Consensus         1 lg~g~~--~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~   78 (265)
T cd05579           1 ISKGAY--GRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGG   78 (265)
T ss_pred             CCCCCc--eEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCC
Confidence            578889  89998822      11121111     123445778999999999999999999999999999999999999


Q ss_pred             CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---------
Q 048314           99 DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---------  169 (274)
Q Consensus        99 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---------  169 (274)
                      +|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++....         
T Consensus        79 ~L~~~l~~--~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  153 (265)
T cd05579          79 DLASLLEN--VGSLDEDVARIYIAEIVLALEYLHSN---GIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLND  153 (265)
T ss_pred             cHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHc---CeecCCCCHHHeEEcCCCCEEEEecccchhcccCccccccc
Confidence            99999986  34789999999999999999999999   99999999999999999999999999875422         


Q ss_pred             ----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 ----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 ----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                                +..|++||.......+.++|+||||++++++++|..||....   .....     .....+       ..
T Consensus       154 ~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~---~~~~~-----~~~~~~-------~~  218 (265)
T cd05579         154 DEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGET---PEEIF-----QNILNG-------KI  218 (265)
T ss_pred             ccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC---HHHHH-----HHHhcC-------Cc
Confidence                      346999999988888899999999999999999999996431   11000     000000       00


Q ss_pred             ccCHH--HHHHHHHHHHHhhccCCCCCCCh---hhHHh
Q 048314          240 EVDKK--NLENLVKVGLWCVQDEPALRPSM---KCVVM  272 (274)
Q Consensus       240 ~~~~~--~~~~~~~li~~cl~~dp~~Rps~---~evl~  272 (274)
                      ..+..  .+..+.+++.+||+.+|++|||+   .++++
T Consensus       219 ~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         219 EWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             CCCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence            12222  26788999999999999999999   66553

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-34  Score=249.85  Aligned_cols=244  Identities=16%  Similarity=0.118  Sum_probs=177.2

Q ss_pred             ccccccCCCCCCCCcchhHHHHH--------HHHHhcC-----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeC--Ccc
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMRA--------LMATVNS-----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--SKP   88 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~~--------~~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~   88 (274)
                      |...+.+|.|++  |.||+|...        ++|....     ....+.+.+|+.++++++||||+++++++.+.  ...
T Consensus         2 y~~~~~ig~g~~--g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   79 (316)
T cd07842           2 YEIEGCIGRGTY--GRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSV   79 (316)
T ss_pred             ceEEEEeccCCc--EEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceE
Confidence            556678999999  999998321        1222221     12235567899999999999999999999887  789


Q ss_pred             eEEEEeCCCCCHHHHHHhCC---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC----CCcEEEec
Q 048314           89 STEAALDLPWDLAYIIFCSA---ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE----FWTAKISD  161 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~---~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~----~~~~kl~d  161 (274)
                      ++||||+.+ +|.+++....   ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.    ++.+|++|
T Consensus        80 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~h~dlkp~Nil~~~~~~~~~~~kl~D  155 (316)
T cd07842          80 YLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN---WVLHRDLKPANILVMGEGPERGVVKIGD  155 (316)
T ss_pred             EEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEEcCCCCccceEEECC
Confidence            999999874 7777765321   23689999999999999999999999   9999999999999999    89999999


Q ss_pred             cccceecC--------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCCh------hhHHHH
Q 048314          162 FGLAKLLS--------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKP------EEIILT  220 (274)
Q Consensus       162 ~g~~~~~~--------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~------~~~~~~  220 (274)
                      ||++....              +..|+|||.+.+. .++.++|+||||+++++|++|..||.......      ....+.
T Consensus       156 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (316)
T cd07842         156 LGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLE  235 (316)
T ss_pred             CccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHH
Confidence            99876532              3459999987654 57889999999999999999999997542221      001111


Q ss_pred             HHHHHHH----------hh-hhhhh---hhcCCccC-----------HHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          221 NWVYKCF----------IN-RELNK---LVRGTEVD-----------KKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       221 ~~~~~~~----------~~-~~~~~---~~~~~~~~-----------~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .......          .. .....   .......+           ......+.+++.+||+.||++|||+.|+++.
T Consensus       236 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~  313 (316)
T cd07842         236 RIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEH  313 (316)
T ss_pred             HHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            1100000          00 00000   00000011           0234578999999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-35  Score=268.20  Aligned_cols=223  Identities=18%  Similarity=0.190  Sum_probs=187.0

Q ss_pred             cccCCCCCCCCcchhHH----------HHHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           27 SSLNDRNSPRSKSVWSC----------MRALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~----------~~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ..++|.|.|  |.||+|          ..+.+|.+.+.   +...++++|+-+|.++.|||++||+|+|..+. +.||++
T Consensus       701 ~kvLGsgAf--GtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq  777 (1177)
T KOG1025|consen  701 DKVLGSGAF--GTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQ  777 (1177)
T ss_pred             hceeccccc--eeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHH
Confidence            566999999  999999          11222333322   44567889999999999999999999998766 889999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |++.|+|.||++. ....+.-+..+.|+.||++|+.|||.+   +++||||-.+|+|+..-..+|+.|||+++...    
T Consensus       778 ~mP~G~LlDyvr~-hr~~igsq~lLnw~~QIAkgM~YLe~q---rlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~  853 (1177)
T KOG1025|consen  778 LMPLGCLLDYVRE-HRDNIGSQDLLNWCYQIAKGMKYLEEQ---RLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEK  853 (1177)
T ss_pred             hcccchHHHHHHH-hhccccHHHHHHHHHHHHHHHHHHHhc---chhhhhhhhhheeecCCCeEEEEecchhhccCcccc
Confidence            9999999999998 556789999999999999999999999   99999999999999999999999999998765    


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               -..|||-|.+....|+.++|||||||++||++| |..|++....                 ..+.++++..
T Consensus       854 ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~-----------------~eI~dlle~g  916 (1177)
T KOG1025|consen  854 EYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPA-----------------EEIPDLLEKG  916 (1177)
T ss_pred             cccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCH-----------------HHhhHHHhcc
Confidence                     235888899999999999999999999999886 8899875411                 1222222211


Q ss_pred             ---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          240 ---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       240 ---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                         ..|.-++.++.-++.+||..|+..||+++++.+.
T Consensus       917 eRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~  953 (1177)
T KOG1025|consen  917 ERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEE  953 (1177)
T ss_pred             ccCCCCCCccHHHHHHHHHHhccCcccCccHHHHHHH
Confidence               4788889999999999999999999999998754

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.7e-34  Score=240.58  Aligned_cols=231  Identities=17%  Similarity=0.115  Sum_probs=181.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcC-------CCCCCcHHHHHHHHhcCCCCccceEeEEEEeC--C
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS-------PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--S   86 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~-------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~   86 (274)
                      .+|...+.+|.|++  |.||++..      .++|....       ......+.+|+.++++++|+||+++++++.+.  .
T Consensus         2 ~~~~~~~~lg~g~~--g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~   79 (264)
T cd06653           2 VNWRLGKLLGRGAF--GEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEK   79 (264)
T ss_pred             CceeeeeeEccCCC--eEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCC
Confidence            36778899999999  99999821      11111111       01123567899999999999999999998764  4


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++++||+++++|.+++..  ...+++...+.++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||+++
T Consensus        80 ~~~~v~e~~~~~~L~~~~~~--~~~l~~~~~~~~~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  154 (264)
T cd06653          80 KLSIFVEYMPGGSIKDQLKA--YGALTENVTRRYTRQILQGVSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASK  154 (264)
T ss_pred             EEEEEEEeCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcccccc
Confidence            57899999999999999975  34589999999999999999999999   99999999999999999999999999886


Q ss_pred             ec--------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          167 LL--------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       167 ~~--------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      ..              ++..|+|||.+....++.++|+||||++++++++|+.||....   .....        .+. .
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~--------~~~-~  222 (264)
T cd06653         155 RIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYE---AMAAI--------FKI-A  222 (264)
T ss_pred             ccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccC---HHHHH--------HHH-H
Confidence            42              2456999999988888899999999999999999999996331   10000        000 0


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .. -.....+...+..+.+++.+||+ +|..|||+.++++.
T Consensus       223 ~~-~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~~  261 (264)
T cd06653         223 TQ-PTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLRH  261 (264)
T ss_pred             cC-CCCCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhcC
Confidence            00 01113556677889999999999 57999999998763

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=8.2e-35  Score=254.82  Aligned_cols=240  Identities=18%  Similarity=0.183  Sum_probs=177.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeC-----C
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG-----S   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~   86 (274)
                      +++|...+.+|.|++  |.||+|.      ..++|...   ......++.+|+.++++++||||+++++++...     .
T Consensus         4 ~~~y~i~~~lg~G~~--g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   81 (336)
T cd07849           4 GPRYQNLSYIGEGAY--GMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFN   81 (336)
T ss_pred             ccceEEEEEEEecCC--eEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccc
Confidence            467888999999999  9999982      11222221   112334567899999999999999999987643     3


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++++||+. ++|.+++..   ..+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++++|||++.
T Consensus        82 ~~~lv~e~~~-~~l~~~~~~---~~l~~~~~~~i~~ql~~aL~~LH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~  154 (336)
T cd07849          82 DVYIVQELME-TDLYKLIKT---QHLSNDHIQYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTNCDLKICDFGLAR  154 (336)
T ss_pred             eEEEEehhcc-cCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEECccccee
Confidence            5799999997 488888753   5699999999999999999999999   99999999999999999999999999886


Q ss_pred             ecC--------------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh--
Q 048314          167 LLS--------------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN--  229 (274)
Q Consensus       167 ~~~--------------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~--  229 (274)
                      ...              +..|+|||.+.. ..++.++|+||+|+++|+|++|+.||......    .....+......  
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~----~~~~~~~~~~~~~~  230 (336)
T cd07849         155 IADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYL----HQLNLILGVLGTPS  230 (336)
T ss_pred             eccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH----HHHHHHHHHcCCCC
Confidence            432              456999998654 46789999999999999999999999643111    111111110000  


Q ss_pred             -hhhhh--------hhc----CCccC-----HHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          230 -RELNK--------LVR----GTEVD-----KKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       230 -~~~~~--------~~~----~~~~~-----~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                       .....        ...    ....+     ...+..+.+++.+||+.||++|||+.|+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~h  292 (336)
T cd07849         231 QEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAH  292 (336)
T ss_pred             HHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence             00000        000    00011     1235678999999999999999999999863

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=5.4e-34  Score=242.84  Aligned_cols=241  Identities=20%  Similarity=0.156  Sum_probs=178.3

Q ss_pred             cccccCCCCCCCCcchhHHHHH------HHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           25 CRSSLNDRNSPRSKSVWSCMRA------LMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        25 ~~~~~~g~g~~~~g~vy~~~~~------~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      .....+|.|++  |.||+|...      ++|...    .....+.+..|+.++++++|+||+++++++.+.+..++|+||
T Consensus         2 ~~~~~ig~g~~--~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   79 (282)
T cd07829           2 EKLEKLGEGTY--GVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEY   79 (282)
T ss_pred             eeehcccccCc--ceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecC
Confidence            34567999999  999988221      112111    112334567899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      ++ ++|.+++... ...+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.++|+|||.+....     
T Consensus        80 ~~-~~l~~~i~~~-~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~  154 (282)
T cd07829          80 CD-MDLKKYLDKR-PGPLSPNLIKSIMYQLLRGLAYCHSH---RILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRT  154 (282)
T ss_pred             cC-cCHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChheEEEcCCCCEEEecCCcccccCCCccc
Confidence            97 5999999863 25699999999999999999999999   99999999999999999999999999886532     


Q ss_pred             ------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH-------HHHHHhh-----h
Q 048314          170 ------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW-------VYKCFIN-----R  230 (274)
Q Consensus       170 ------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~-------~~~~~~~-----~  230 (274)
                            +..|+|||.+... .++.++|+||||++++++++|..||...............       .+....+     .
T Consensus       155 ~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (282)
T cd07829         155 YTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKP  234 (282)
T ss_pred             cCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccc
Confidence                  3458999988766 7889999999999999999999998643211100000000       0000000     0


Q ss_pred             hhhhhhcCC--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          231 ELNKLVRGT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       231 ~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .........  .........+.+++..||..||++||++.++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         235 TFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             cccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence            000000000  001112567999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1e-34  Score=257.43  Aligned_cols=234  Identities=14%  Similarity=0.133  Sum_probs=191.5

Q ss_pred             hHHHHhhhccccccCCCCCCCCcchhHH------HHHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           16 SLCTKLRNFCRSSLNDRNSPRSKSVWSC------MRALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        16 ~l~~~~~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      ......+.|.....||+|.|  +.|-.+      ..+++|.+...    .....+.+|+++|..++||||||++++....
T Consensus        50 ~~~~~vg~y~i~~tig~g~f--~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~  127 (596)
T KOG0586|consen   50 DDSNSVGLYVIIKTIGKGNF--AKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETE  127 (596)
T ss_pred             cccccccceeeeeeecccee--EEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeec
Confidence            44555677888999999999  988887      22222322222    2234467999999999999999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      ..+++||||+.+|.+.+++..  .+.+.......++.|+++|++|||++   .|+|||||.+|++++.+.++||+|||++
T Consensus       128 ~~lylV~eya~~ge~~~yl~~--~gr~~e~~ar~~F~q~vsaveYcH~k---~ivHrdLk~eNilL~~~mnikIaDfgfS  202 (596)
T KOG0586|consen  128 ATLYLVMEYASGGELFDYLVK--HGRMKEKEARAKFRQIVSAVEYCHSK---NIVHRDLKAENILLDENMNIKIADFGFS  202 (596)
T ss_pred             ceeEEEEEeccCchhHHHHHh--cccchhhhhhhhhHHHHHHHHHHhhc---ceeccccchhhcccccccceeeeccccc
Confidence            999999999999999999986  45667799999999999999999999   9999999999999999999999999999


Q ss_pred             eecC----------CCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          166 KLLS----------DKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       166 ~~~~----------~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .+..          ++.|.|||+..+..| ++++|+||+|+++|.|++|..||+......                -..+
T Consensus       203 ~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~----------------Lr~r  266 (596)
T KOG0586|consen  203 TFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKE----------------LRPR  266 (596)
T ss_pred             eeecccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCccccc----------------ccch
Confidence            7654          677999999988776 589999999999999999999998542211                1111


Q ss_pred             hhcCC-ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          235 LVRGT-EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       235 ~~~~~-~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+... .+|.-.+.++.++++++|..+|.+|++++++.+
T Consensus       267 vl~gk~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~  305 (596)
T KOG0586|consen  267 VLRGKYRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMK  305 (596)
T ss_pred             heeeeecccceeechhHHHHHHhhccCccccCCHHHhhh
Confidence            12222 456666778899999999999999999999854

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=9.1e-34  Score=245.89  Aligned_cols=229  Identities=18%  Similarity=0.163  Sum_probs=176.4

Q ss_pred             ccccccCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      |.....+|.|++  |.||+|..      .+++.....     .....+.+|+.++++++|||++++++++.+....++||
T Consensus        23 ~~~~~~lg~g~~--g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  100 (313)
T cd06633          23 FVGLHEIGHGSF--GAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVM  100 (313)
T ss_pred             hhcceeeccCCC--eEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEE
Confidence            444566999999  99999821      112222111     11234678999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+. |++.+++.. ....+++..+..++.|++.|+.|||+.   +++|+|++|+||+++.++.++|+|||.+....   
T Consensus       101 e~~~-~~l~~~l~~-~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~  175 (313)
T cd06633         101 EYCL-GSASDLLEV-HKKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASKSSPAN  175 (313)
T ss_pred             ecCC-CCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChhhEEECCCCCEEEeecCCCcccCCCC
Confidence            9996 588888865 345699999999999999999999999   99999999999999999999999999876432   


Q ss_pred             ----CCCcCCCcccc---cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 ----DKGCMAPECYK---RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 ----~~~~~ape~~~---~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                          +..|+|||.+.   ...++.++|+||||+++|+|++|..||.......    ...   .. ....     .+....
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~----~~~---~~-~~~~-----~~~~~~  242 (313)
T cd06633         176 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS----ALY---HI-AQND-----SPTLQS  242 (313)
T ss_pred             CccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHH----HHH---HH-HhcC-----CCCCCc
Confidence                45699999874   3557889999999999999999999986431110    000   00 0000     011122


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+..+.+++.+||+.+|++|||+.+++.
T Consensus       243 ~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~  272 (313)
T cd06633         243 NEWTDSFRGFVDYCLQKIPQERPASAELLR  272 (313)
T ss_pred             cccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            234457899999999999999999999975

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=3.3e-34  Score=247.64  Aligned_cols=244  Identities=18%  Similarity=0.144  Sum_probs=176.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC----
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS----   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----   86 (274)
                      .++|...+.+|.|++  |.||++..      .++|.....    .....+.+|++++++++||||+++++++.+..    
T Consensus         7 ~~~y~~~~~lg~g~~--~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   84 (311)
T cd07866           7 LRDYEILGKLGEGTF--GEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSK   84 (311)
T ss_pred             cccEEEEEEeccCCC--EEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccc
Confidence            578888999999999  99999821      112222111    12345678999999999999999999875433    


Q ss_pred             ----cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           87 ----KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        87 ----~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                          ..++|+||+.+ +|.+.+.. ....+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++++||
T Consensus        85 ~~~~~~~lv~~~~~~-~l~~~~~~-~~~~~~~~~~~~i~~~l~~al~~lH~~---~i~H~dl~p~nil~~~~~~~~l~df  159 (311)
T cd07866          85 RKRGSVYMVTPYMDH-DLSGLLEN-PSVKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADF  159 (311)
T ss_pred             ccCceEEEEEecCCc-CHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECcC
Confidence                46999999874 78777765 345799999999999999999999999   9999999999999999999999999


Q ss_pred             ccceecC----------------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHH
Q 048314          163 GLAKLLS----------------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL  219 (274)
Q Consensus       163 g~~~~~~----------------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~  219 (274)
                      |++....                      ++.|+|||.+.+. .++.++|+||||+++|+|++|.+||...........+
T Consensus       160 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~  239 (311)
T cd07866         160 GLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLI  239 (311)
T ss_pred             ccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            9886432                      3449999987654 5788999999999999999999999643211110000


Q ss_pred             HHHHHHHHhhh------hhhh----hhcCC-c-----cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          220 TNWVYKCFINR------ELNK----LVRGT-E-----VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       220 ~~~~~~~~~~~------~~~~----~~~~~-~-----~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ... .......      ....    ..... .     ........+.+++.+||+.||++|||+.|+++
T Consensus       240 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         240 FKL-CGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             HHH-hCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            000 0000000      0000    00000 0     00122357889999999999999999999986

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.4e-34  Score=250.99  Aligned_cols=243  Identities=15%  Similarity=0.149  Sum_probs=181.0

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC-----c
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS-----K   87 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~   87 (274)
                      +|.....+|.|++  |.||+|..      .++|....    ....+.+.+|+.++++++|+||+++++++.+..     .
T Consensus         1 ~y~i~~~ig~g~~--~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~   78 (330)
T cd07834           1 RYELLKPIGSGAY--GVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFND   78 (330)
T ss_pred             CceeeeeecCCCC--eEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccc
Confidence            3566788999999  99998821      11221111    234456889999999999999999999987765     7


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .+++|||++ ++|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||||.||+++.++.++|+|||.+..
T Consensus        79 ~~lv~e~~~-~~l~~~l~~--~~~l~~~~~~~i~~~l~~~l~~LH~~---gi~H~dlkp~nili~~~~~~~L~dfg~~~~  152 (330)
T cd07834          79 VYIVTELME-TDLHKVIKS--PQPLTDDHIQYFLYQILRGLKYLHSA---NVIHRDLKPSNILVNSNCDLKICDFGLARG  152 (330)
T ss_pred             eEEEecchh-hhHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccCceEe
Confidence            899999997 589999875  34799999999999999999999999   999999999999999999999999999875


Q ss_pred             cC--------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH-------H
Q 048314          168 LS--------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY-------K  225 (274)
Q Consensus       168 ~~--------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~-------~  225 (274)
                      ..              +..|+|||.+... .++.++|+||||+++++|++|..||...........+.....       .
T Consensus       153 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  232 (330)
T cd07834         153 VDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLK  232 (330)
T ss_pred             ecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhh
Confidence            43              3348999999877 788999999999999999999999964421110000000000       0


Q ss_pred             HHhhhhhhhhhc---CC------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          226 CFINRELNKLVR---GT------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       226 ~~~~~~~~~~~~---~~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ..........+.   ..      ......+..+.+++.+||+.||++|||+.++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  289 (330)
T cd07834         233 FITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAH  289 (330)
T ss_pred             hccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            000000001110   00      0112245778999999999999999999999863

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1.2e-33  Score=242.32  Aligned_cols=231  Identities=14%  Similarity=0.097  Sum_probs=178.2

Q ss_pred             ccccccCCCCCCCCcchhHHHH---------HHHHHhc------CCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCc
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR---------ALMATVN------SPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~------~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~   87 (274)
                      |...+.+|.|+|  |.||.+..         .++|...      .....+.+.+|+.+++++ +|+||+++++++..+..
T Consensus         2 y~~~~~lg~G~~--g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~   79 (290)
T cd05613           2 FELLKVLGTGAY--GKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTK   79 (290)
T ss_pred             ceeeeeeccCCc--ceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCe
Confidence            556778999999  99997522         1112111      112335567899999999 48999999999998889


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++|+||+++++|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++..
T Consensus        80 ~~lv~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~  154 (290)
T cd05613          80 LHLILDYINGGELFTHLSQ--RERFKEQEVQIYSGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKE  154 (290)
T ss_pred             EEEEEecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEECCCCCEEEeeCcccee
Confidence            9999999999999999975  45689999999999999999999999   999999999999999999999999998764


Q ss_pred             cC------------CCCcCCCcccccC--CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          168 LS------------DKGCMAPECYKRT--PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       168 ~~------------~~~~~ape~~~~~--~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ..            +..|++||.+...  .++.++|+||||+++|+|++|..||..............   ..      .
T Consensus       155 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~---~~------~  225 (290)
T cd05613         155 FHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISR---RI------L  225 (290)
T ss_pred             cccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHH---Hh------h
Confidence            32            4569999988753  467899999999999999999999964322111111111   00      0


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      .  ...+.+......+.+++.+||+.||++||     ++.++++
T Consensus       226 ~--~~~~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~  267 (290)
T cd05613         226 K--SEPPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKK  267 (290)
T ss_pred             c--cCCCCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHc
Confidence            0  01123445567889999999999999997     6677664

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5e-34  Score=235.72  Aligned_cols=234  Identities=18%  Similarity=0.145  Sum_probs=181.6

Q ss_pred             cccCCCCCCCCcchhHH------HHHHHHHhcC--CCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceEEEEeCCC
Q 048314           27 SSLNDRNSPRSKSVWSC------MRALMATVNS--PYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPSTEAALDLP   97 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~------~~~~~~~~~~--~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~   97 (274)
                      +.++|+|.+  +.|-.+      .--++|++.+  ...+++..+|++++.+.+ |+||++|+.||.++..+|||||-|.|
T Consensus        83 ~e~LGeGAy--asVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~G  160 (463)
T KOG0607|consen   83 SELLGEGAY--ASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRG  160 (463)
T ss_pred             HHHhcCccc--eeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccC
Confidence            467899999  888766      2222333333  266788899999999998 99999999999999999999999999


Q ss_pred             CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC---cEEEeccccceecC-----
Q 048314           98 WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKISDFGLAKLLS-----  169 (274)
Q Consensus        98 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~---~~kl~d~g~~~~~~-----  169 (274)
                      |+|..+++.  ...+++.+..++..+|+.||.+||.+   ||.|||+||+|||.....   -+||+||.+...+.     
T Consensus       161 GplLshI~~--~~~F~E~EAs~vvkdia~aLdFlH~k---gIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~  235 (463)
T KOG0607|consen  161 GPLLSHIQK--RKHFNEREASRVVKDIASALDFLHTK---GIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDC  235 (463)
T ss_pred             chHHHHHHH--hhhccHHHHHHHHHHHHHHHHHHhhc---CcccccCCccceeecCCCCcCceeeeccccccccccCCCC
Confidence            999999986  56799999999999999999999999   999999999999986443   46999998865432     


Q ss_pred             -------------CCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHH----HHHHHHHHH
Q 048314          170 -------------DKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII----LTNWVYKCF  227 (274)
Q Consensus       170 -------------~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~----~~~~~~~~~  227 (274)
                                   +..|||||++-     ...|+.++|.||+|+++|-|++|.+||...-......+    -..+...  
T Consensus       236 spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~--  313 (463)
T KOG0607|consen  236 SPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNK--  313 (463)
T ss_pred             CCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHH--
Confidence                         23599999763     23588999999999999999999999986543332211    1111111  


Q ss_pred             hhhhhhhhhcCC-ccCH----HHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 INRELNKLVRGT-EVDK----KNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 ~~~~~~~~~~~~-~~~~----~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         -...+-++. ++|.    ..+.+.++++...|..|+.+|-++.++++
T Consensus       314 ---LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  314 ---LFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             ---HHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccC
Confidence               111222222 3433    44678899999999999999999998875

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=1.6e-34  Score=245.64  Aligned_cols=227  Identities=16%  Similarity=0.142  Sum_probs=183.1

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHH-----hcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMAT-----VNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~-----~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~l   90 (274)
                      +|.....+|.|++  |.||++..      .+++.     .......+.+.+|+.++++++ ||||+++++++.+.+..++
T Consensus         2 ~y~~~~~lg~g~~--~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~l   79 (280)
T cd05581           2 DFKFGKIIGEGSF--STVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYF   79 (280)
T ss_pred             CceEeeeecCCCc--eEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEE
Confidence            5667788999999  99998821      11111     111122345678999999999 9999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ||||+.+++|.+++..  .+.+++..+..++.|++.||.+||+.   +++|+|++|+||+++.++.++++|||++.... 
T Consensus        80 v~e~~~~~~L~~~l~~--~~~l~~~~~~~i~~ql~~~l~~Lh~~---~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~  154 (280)
T cd05581          80 VLEYAPNGELLQYIRK--YGSLDEKCTRFYAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTAKVLDP  154 (280)
T ss_pred             EEcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEecCCccccccCC
Confidence            9999999999999986  34799999999999999999999999   99999999999999999999999999876432 


Q ss_pred             ------------------------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHH
Q 048314          170 ------------------------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL  219 (274)
Q Consensus       170 ------------------------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~  219 (274)
                                                    +..|++||.......+.++|+||||++++++++|..||....   ....+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~---~~~~~  231 (280)
T cd05581         155 NSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN---EYLTF  231 (280)
T ss_pred             ccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCcc---HHHHH
Confidence                                          356899999888888999999999999999999999997442   11110


Q ss_pred             HHHHHHHHhhhhhhhhhcC-CccCHHHHHHHHHHHHHhhccCCCCCCCh----hhHHh
Q 048314          220 TNWVYKCFINRELNKLVRG-TEVDKKNLENLVKVGLWCVQDEPALRPSM----KCVVM  272 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~dp~~Rps~----~evl~  272 (274)
                      .             ..... ...+...+..+.+++.+||+.||++|||+    .++++
T Consensus       232 ~-------------~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         232 Q-------------KILKLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             H-------------HHHhcCCCCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence            0             00011 12344556789999999999999999999    88875

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=3.4e-34  Score=246.50  Aligned_cols=236  Identities=18%  Similarity=0.189  Sum_probs=178.0

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcce
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~   89 (274)
                      ..++|...+.+|.|.+  |.||++..      .++|.....   .....+..|+.++.+.. ||||+++++++.+....+
T Consensus        13 ~~~~~~~~~~lg~g~~--~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~   90 (296)
T cd06618          13 DLNDLENLGEIGSGTC--GQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVF   90 (296)
T ss_pred             CcchheeeeEeeccCC--eEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEE
Confidence            3467777889999999  99999822      122222211   12234567777777775 999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++|||+. ++|.+++.. ....+++..+..++.|++.|+.|||+ .   +++|+||+|+||+++.++.++|+|||.+...
T Consensus        91 ~v~e~~~-~~l~~l~~~-~~~~l~~~~~~~i~~~i~~~l~~lH~~~---~i~H~dl~p~nill~~~~~~kL~dfg~~~~~  165 (296)
T cd06618          91 ICMELMS-TCLDKLLKR-IQGPIPEDILGKMTVAIVKALHYLKEKH---GVIHRDVKPSNILLDASGNVKLCDFGISGRL  165 (296)
T ss_pred             EEeeccC-cCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhhC---CEecCCCcHHHEEEcCCCCEEECccccchhc
Confidence            9999985 578888765 34579999999999999999999997 5   8999999999999999999999999988643


Q ss_pred             C----------CCCcCCCcccccCC----CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 S----------DKGCMAPECYKRTP----ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ~----------~~~~~ape~~~~~~----~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .          +..|+|||.+....    ++.++|+||||+++|+|++|+.||......  ...+.    ... ......
T Consensus       166 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~----~~~-~~~~~~  238 (296)
T cd06618         166 VDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTE--FEVLT----KIL-QEEPPS  238 (296)
T ss_pred             cCCCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhH--HHHHH----HHh-cCCCCC
Confidence            2          35799999987543    788999999999999999999999642111  00010    000 000000


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .    +.....+.++.+++.+||+.||++|||+.++++.
T Consensus       239 ~----~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         239 L----PPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             C----CCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            0    1112345779999999999999999999999763

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.2e-33  Score=248.48  Aligned_cols=251  Identities=16%  Similarity=0.163  Sum_probs=181.9

Q ss_pred             hhhhHHHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEE
Q 048314           13 ARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVA   82 (274)
Q Consensus        13 ~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~   82 (274)
                      ...++-..+++|...+.+|.|+|  |.||++..      .++|.....    ...+.+.+|+.++++++||||+++++++
T Consensus         8 ~~~~~~~~~~~y~~~~~lg~G~~--g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~   85 (345)
T cd07877           8 LNKTIWEVPERYQNLSPVGSGAY--GSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVF   85 (345)
T ss_pred             HHHHHhhccCceEEEEEeeecCC--eEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeee
Confidence            34456667889999999999999  99998821      112222111    1234567899999999999999999988


Q ss_pred             EeC------CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 048314           83 MRG------SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT  156 (274)
Q Consensus        83 ~~~------~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~  156 (274)
                      ...      ...+++++++ +++|.+++..   ..+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.
T Consensus        86 ~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~  158 (345)
T cd07877          86 TPARSLEEFNDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCE  158 (345)
T ss_pred             eecccccccccEEEEehhc-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEcCCCC
Confidence            643      3467888876 7899988864   4689999999999999999999999   9999999999999999999


Q ss_pred             EEEeccccceecC--------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH-----
Q 048314          157 AKISDFGLAKLLS--------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW-----  222 (274)
Q Consensus       157 ~kl~d~g~~~~~~--------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~-----  222 (274)
                      ++|+|||++....        +..|+|||.+.. ..++.++|+||||+++|+|++|+.||...............     
T Consensus       159 ~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~  238 (345)
T cd07877         159 LKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPG  238 (345)
T ss_pred             EEEecccccccccccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCC
Confidence            9999999986532        457999998765 46788999999999999999999999543111100000000     


Q ss_pred             --HHHHHhhhhhhhhh---cC--C----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          223 --VYKCFINRELNKLV---RG--T----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       223 --~~~~~~~~~~~~~~---~~--~----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                        .............+   ..  .    ......+..+.+++.+||+.||.+|||+.++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  299 (345)
T cd07877         239 AELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  299 (345)
T ss_pred             HHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhc
Confidence              00000000000000   00  0    001123567899999999999999999999985

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=8.3e-34  Score=249.21  Aligned_cols=244  Identities=15%  Similarity=0.137  Sum_probs=179.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC---
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS---   86 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~---   86 (274)
                      ..++|.....+|.|++  |.||++.      ..++|.....    ...+.+.+|+.++++++||||+++++++....   
T Consensus        13 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07880          13 VPDRYRDLKQVGSGAY--GTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD   90 (343)
T ss_pred             cccceEEEEEeeecCC--eEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence            3567888899999999  9999982      1122222111    11234678999999999999999999987544   


Q ss_pred             ---cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccc
Q 048314           87 ---KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG  163 (274)
Q Consensus        87 ---~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g  163 (274)
                         ..++||||+ +++|.+++..   ..+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||
T Consensus        91 ~~~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~al~~LH~~---gi~H~dlkp~Nill~~~~~~kl~dfg  163 (343)
T cd07880          91 RFHDFYLVMPFM-GTDLGKLMKH---EKLSEDRIQFLVYQMLKGLKYIHAA---GIIHRDLKPGNLAVNEDCELKILDFG  163 (343)
T ss_pred             ccceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecc
Confidence               358999998 6799988864   4689999999999999999999999   99999999999999999999999999


Q ss_pred             cceecC--------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH-------HHHHH
Q 048314          164 LAKLLS--------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW-------VYKCF  227 (274)
Q Consensus       164 ~~~~~~--------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~-------~~~~~  227 (274)
                      .+....        +..|++||.+.. ..++.++|+||+|++++++++|..||...............       .....
T Consensus       164 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (343)
T cd07880         164 LARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKL  243 (343)
T ss_pred             cccccccCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhh
Confidence            986533        567899998875 35788999999999999999999999643211110000000       00000


Q ss_pred             hhhhhhhhhcC------C---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 INRELNKLVRG------T---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 ~~~~~~~~~~~------~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...........      .   ......+..+.+++.+|++.||++|||+.++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~  297 (343)
T cd07880         244 QSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALA  297 (343)
T ss_pred             cchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            00000000000      0   111234557899999999999999999999975

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=5.2e-34  Score=250.41  Aligned_cols=243  Identities=16%  Similarity=0.123  Sum_probs=174.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeC-------
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG-------   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-------   85 (274)
                      .++|.....+|.|++  |.||+|..      .++|.....  ...+.+.+|+.++++++||||+++++.+...       
T Consensus         4 ~~~y~~~~~Lg~g~~--g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~   81 (342)
T cd07854           4 GSRYMDLRPLGCGSN--GLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTED   81 (342)
T ss_pred             CcceEEEEEecCCCC--EEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccc
Confidence            367888899999999  99998821      112222211  2345577899999999999999999876543       


Q ss_pred             -------CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CCCcE
Q 048314           86 -------SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWTA  157 (274)
Q Consensus        86 -------~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-~~~~~  157 (274)
                             ...++||||++ ++|.+++..   ..+++..++.++.|++.||.|||+.   +++|+||||+||+++ .++.+
T Consensus        82 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~---givH~dikp~Nili~~~~~~~  154 (342)
T cd07854          82 VGSLTELNSVYIVQEYME-TDLANVLEQ---GPLSEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANVFINTEDLVL  154 (342)
T ss_pred             cccccccceEEEEeeccc-ccHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCceE
Confidence                   35789999997 589988864   4689999999999999999999999   999999999999997 45678


Q ss_pred             EEeccccceec--------------CCCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH
Q 048314          158 KISDFGLAKLL--------------SDKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW  222 (274)
Q Consensus       158 kl~d~g~~~~~--------------~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~  222 (274)
                      +++|||.+...              .+..|+|||.+.. ..++.++|+|||||++|+|++|+.||..............-
T Consensus       155 kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~  234 (342)
T cd07854         155 KIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILES  234 (342)
T ss_pred             EECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHh
Confidence            99999998643              1346999997754 45788999999999999999999999643111100000000


Q ss_pred             -------HHHHHhhhhhhhh---hcCCc-----cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          223 -------VYKCFINRELNKL---VRGTE-----VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       223 -------~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                             ......+......   .....     .....+.++.+++.+||+.||++|||+.|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         235 VPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             cCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence                   0000000000000   00000     11123467889999999999999999999985

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-33  Score=235.04  Aligned_cols=221  Identities=19%  Similarity=0.161  Sum_probs=176.5

Q ss_pred             CCCCCCCCcchhHHHHH------HHHHhcC-----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCC
Q 048314           30 NDRNSPRSKSVWSCMRA------LMATVNS-----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPW   98 (274)
Q Consensus        30 ~g~g~~~~g~vy~~~~~------~~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g   98 (274)
                      +|.|++  |.||++...      +++....     ....+.+.+|+.++++++||||+++++.+.+++..+++|||++++
T Consensus         1 lg~G~~--~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~   78 (250)
T cd05123           1 LGKGSF--GKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGG   78 (250)
T ss_pred             CCCCCc--eEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCC
Confidence            588999  899987211      1111111     123346789999999999999999999999999999999999999


Q ss_pred             CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---------
Q 048314           99 DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---------  169 (274)
Q Consensus        99 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---------  169 (274)
                      +|.+++..  ...+++.....++.|++.|+.|||+.   +++|+||+|.||+++.++.++++|||.+....         
T Consensus        79 ~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lh~~---~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~  153 (250)
T cd05123          79 ELFSHLSK--EGRFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTF  153 (250)
T ss_pred             cHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCC
Confidence            99999986  34689999999999999999999998   99999999999999999999999999876432         


Q ss_pred             --CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHH
Q 048314          170 --DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLE  247 (274)
Q Consensus       170 --~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (274)
                        +..|++||.......+.++|+||||+++|++++|..||.....   . ....   . ...       .....+...+.
T Consensus       154 ~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~---~-~~~~---~-~~~-------~~~~~~~~~~~  218 (250)
T cd05123         154 CGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR---K-EIYE---K-ILK-------DPLRFPEFLSP  218 (250)
T ss_pred             cCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH---H-HHHH---H-Hhc-------CCCCCCCCCCH
Confidence              4569999999887888999999999999999999999964311   1 0000   0 000       11124444567


Q ss_pred             HHHHHHHHhhccCCCCCCCh---hhHHh
Q 048314          248 NLVKVGLWCVQDEPALRPSM---KCVVM  272 (274)
Q Consensus       248 ~~~~li~~cl~~dp~~Rps~---~evl~  272 (274)
                      .+.+++.+||..||++|||+   .++++
T Consensus       219 ~l~~~i~~~l~~~p~~R~~~~~~~~l~~  246 (250)
T cd05123         219 EARDLISGLLQKDPTKRLGSGGAEEIKA  246 (250)
T ss_pred             HHHHHHHHHhcCCHhhCCCcccHHHHHh
Confidence            88999999999999999999   67664

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-33  Score=250.10  Aligned_cols=223  Identities=17%  Similarity=0.172  Sum_probs=175.3

Q ss_pred             ccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEEeCC
Q 048314           24 FCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      |....-+|.|.|  +.+-.+.      .-.+|++..  ...+..+|+.++... +||||+++.+.+.+..+.++|||++.
T Consensus       324 y~~~~~~~~gs~--s~~~~~~~~~t~~~~~vkii~~--~~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~  399 (612)
T KOG0603|consen  324 YEFREELGEGSF--SAVKYCESSPTDQEPAVKIISK--RADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLD  399 (612)
T ss_pred             hccccccCCCCc--cceeeeeccccccchhheeccc--cccccccccchhhhhcCCCcceeecceecCCceeeeeehhcc
Confidence            333444888888  6666551      111222322  134455777666665 49999999999999999999999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE-cCCCcEEEeccccceecC------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM-DEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~-~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++-+.+.+..  ...+. ..+..|+.+|+.|+.|||++   |++||||||+|||+ ++.++++|+|||.++...      
T Consensus       400 g~ell~ri~~--~~~~~-~e~~~w~~~lv~Av~~LH~~---gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp  473 (612)
T KOG0603|consen  400 GGELLRRIRS--KPEFC-SEASQWAAELVSAVDYLHEQ---GVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTP  473 (612)
T ss_pred             ccHHHHHHHh--cchhH-HHHHHHHHHHHHHHHHHHhc---CeeecCCChhheeecCCCCcEEEEEechhhhCchhhccc
Confidence            9888777764  22233 77888999999999999999   99999999999999 689999999999987654      


Q ss_pred             --CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHH
Q 048314          170 --DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLE  247 (274)
Q Consensus       170 --~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (274)
                        +..|.|||++....|+..+|+||||++||+|++|..||......   .             .+...+....++...+.
T Consensus       474 ~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~---~-------------ei~~~i~~~~~s~~vS~  537 (612)
T KOG0603|consen  474 ALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG---I-------------EIHTRIQMPKFSECVSD  537 (612)
T ss_pred             chhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch---H-------------HHHHhhcCCccccccCH
Confidence              45689999999889999999999999999999999999866332   1             12222222234467788


Q ss_pred             HHHHHHHHhhccCCCCCCChhhHHh
Q 048314          248 NLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       248 ~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..++|+.+||+.||.+||+|.++..
T Consensus       538 ~AKdLl~~LL~~dP~~Rl~~~~i~~  562 (612)
T KOG0603|consen  538 EAKDLLQQLLQVDPALRLGADEIGA  562 (612)
T ss_pred             HHHHHHHHhccCChhhCcChhhhcc
Confidence            9999999999999999999999864

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-33  Score=264.00  Aligned_cols=237  Identities=14%  Similarity=0.050  Sum_probs=189.9

Q ss_pred             hhhhHHHHhhhccccccCCCCCCCCcchhHH------HHHHHHHhc-----CCCCCCcHHHHHHHHhcCCCCccceEeEE
Q 048314           13 ARSSLCTKLRNFCRSSLNDRNSPRSKSVWSC------MRALMATVN-----SPYSPSRPLTLTSIVSRVSWTTDIEVSSV   81 (274)
Q Consensus        13 ~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~   81 (274)
                      ..+++.....||....+||+|.|  |.|..+      .+-++|.++     ...+..-|+.|..+|.--+.++|+++.-.
T Consensus        66 ~v~~lrl~~~DfeilKvIGrGaF--GEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyA  143 (1317)
T KOG0612|consen   66 KVKELRLKAEDFEILKVIGRGAF--GEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYA  143 (1317)
T ss_pred             HHHHHhCCHHhhHHHHHhccccc--ceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHH
Confidence            34567778899999999999999  888776      222223222     23466778999999999999999999999


Q ss_pred             EEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 048314           82 AMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD  161 (274)
Q Consensus        82 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  161 (274)
                      |.+..++|+|||||+||+|-..|..  ...+|+...+.++..|+.||.-+|+.   |+|||||||+|||++..|++||+|
T Consensus       144 FQD~~~LYlVMdY~pGGDlltLlSk--~~~~pE~~ArFY~aEiVlAldslH~m---gyVHRDiKPDNvLld~~GHikLAD  218 (1317)
T KOG0612|consen  144 FQDERYLYLVMDYMPGGDLLTLLSK--FDRLPEDWARFYTAEIVLALDSLHSM---GYVHRDIKPDNVLLDKSGHIKLAD  218 (1317)
T ss_pred             hcCccceEEEEecccCchHHHHHhh--cCCChHHHHHHHHHHHHHHHHHHHhc---cceeccCCcceeEecccCcEeecc
Confidence            9999999999999999999999986  34899999999999999999999999   999999999999999999999999


Q ss_pred             ccccee------------cCCCCcCCCccccc-----CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH
Q 048314          162 FGLAKL------------LSDKGCMAPECYKR-----TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY  224 (274)
Q Consensus       162 ~g~~~~------------~~~~~~~ape~~~~-----~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~  224 (274)
                      ||.+-.            .+||.|.+||+++.     +.|+..+|.||+||++|||+.|..||..+..-.+..       
T Consensus       219 FGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~-------  291 (1317)
T KOG0612|consen  219 FGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYG-------  291 (1317)
T ss_pred             chhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHH-------
Confidence            998743            34899999999862     568999999999999999999999997542111111       


Q ss_pred             HHHhhhhhhhhhcCCccC--HHHHHHHHHHHHHhhccCCCCCCC---hhhH
Q 048314          225 KCFINRELNKLVRGTEVD--KKNLENLVKVGLWCVQDEPALRPS---MKCV  270 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~cl~~dp~~Rps---~~ev  270 (274)
                      ..+...   +.+   .+|  ...+++..+||...+. +|+.|-.   +.++
T Consensus       292 KIm~hk---~~l---~FP~~~~VSeeakdLI~~ll~-~~e~RLgrngiedi  335 (1317)
T KOG0612|consen  292 KIMNHK---ESL---SFPDETDVSEEAKDLIEALLC-DREVRLGRNGIEDI  335 (1317)
T ss_pred             HHhchh---hhc---CCCcccccCHHHHHHHHHHhc-ChhhhcccccHHHH
Confidence            111110   001   133  4578899999999774 5888876   6554

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-33  Score=235.20  Aligned_cols=237  Identities=19%  Similarity=0.179  Sum_probs=194.5

Q ss_pred             hhhHHHHhhhccccccCCCCCCCCcchhHH-----------HHHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEe
Q 048314           14 RSSLCTKLRNFCRSSLNDRNSPRSKSVWSC-----------MRALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVS   79 (274)
Q Consensus        14 ~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~-----------~~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~   79 (274)
                      ..+|.....+|.-+.++-+|.|  |.||.|           ..+.+|.++..   .....++.|.-.+..+.|||+..+.
T Consensus       276 ~~~l~v~r~Rv~l~~llqEGtF--Gri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~  353 (563)
T KOG1024|consen  276 LQELTVQRCRVRLSCLLQEGTF--GRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVL  353 (563)
T ss_pred             HHhhhhhhhheechhhhhcCch--hheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCcccee
Confidence            4556666777888999999999  999999           22334433332   3456678999999999999999999


Q ss_pred             EEEEe-CCcceEEEEeCCCCCHHHHHHhC------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc
Q 048314           80 SVAMR-GSKPSTEAALDLPWDLAYIIFCS------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD  152 (274)
Q Consensus        80 ~~~~~-~~~~~lv~e~~~~gsL~~~l~~~------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~  152 (274)
                      +++.+ ...+++++.++.-|+|..|+...      ..+.++..+.+.++.|++.|++|||++   +++|.||..+|++++
T Consensus       354 ~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~---~ViHkDiAaRNCvId  430 (563)
T KOG1024|consen  354 GVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH---GVIHKDIAARNCVID  430 (563)
T ss_pred             EEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc---Ccccchhhhhcceeh
Confidence            99965 56789999999999999999832      224478888999999999999999999   999999999999999


Q ss_pred             CCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHH
Q 048314          153 EFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEII  218 (274)
Q Consensus       153 ~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~  218 (274)
                      +...+||+|-.+++-..             ...||+||.+....|+..+|+||||+++|||++ |+.|+...+       
T Consensus       431 d~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeID-------  503 (563)
T KOG1024|consen  431 DQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEID-------  503 (563)
T ss_pred             hheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccC-------
Confidence            99999999998887543             236999999999999999999999999999876 888885331       


Q ss_pred             HHHHHHHHHhhhhhhhhhc-CC--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          219 LTNWVYKCFINRELNKLVR-GT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                                ..++..++. +.  .+|..|++++..+|..||..+|++|||++|+..
T Consensus       504 ----------PfEm~~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~  550 (563)
T KOG1024|consen  504 ----------PFEMEHYLKDGYRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVI  550 (563)
T ss_pred             ----------HHHHHHHHhccceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHH
Confidence                      111222222 22  578899999999999999999999999999865

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=5.8e-33  Score=242.71  Aligned_cols=241  Identities=16%  Similarity=0.117  Sum_probs=172.8

Q ss_pred             ccccccCCCCCCCCcchhHHHHH--------HHHHhcCC----CCCCcHHHHHHHHhcCC-CCccceEeEEEEeC----C
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMRA--------LMATVNSP----YSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRG----S   86 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~~--------~~~~~~~~----~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~----~   86 (274)
                      |.....+|.|+|  |.||++...        ++|.....    ...+.+.+|+.++++++ ||||+++++.+...    .
T Consensus         2 y~~~~~lg~G~~--g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~   79 (332)
T cd07857           2 YELIKELGQGAY--GIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFN   79 (332)
T ss_pred             ceEEEEccccCC--eEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCC
Confidence            556778999999  999988321        12211111    12345678999999995 99999999976432    4


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++++||+. ++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+.
T Consensus        80 ~~~~~~e~~~-~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---givH~dlkp~Nili~~~~~~kl~Dfg~a~  153 (332)
T cd07857          80 ELYLYEELME-ADLHQIIRS--GQPLTDAHFQSFIYQILCGLKYIHSA---NVLHRDLKPGNLLVNADCELKICDFGLAR  153 (332)
T ss_pred             cEEEEEeccc-CCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHeEEcCCCCEEeCcCCCce
Confidence            5688889876 689999874  45799999999999999999999999   99999999999999999999999999886


Q ss_pred             ec---------------CCCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH-------
Q 048314          167 LL---------------SDKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV-------  223 (274)
Q Consensus       167 ~~---------------~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~-------  223 (274)
                      ..               ++..|+|||.+.. ..++.++|+||+|+++|++++|..||................       
T Consensus       154 ~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  233 (332)
T cd07857         154 GFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEET  233 (332)
T ss_pred             ecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHH
Confidence            42               2456999998765 467899999999999999999999986432110000000000       


Q ss_pred             HHHHhhhhhhhhhc---CC------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          224 YKCFINRELNKLVR---GT------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       224 ~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..............   ..      .........+.+++.+||+.||++|||+.++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~  291 (332)
T cd07857         234 LSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALE  291 (332)
T ss_pred             HHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            00000000000000   00      011123567899999999999999999999875

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=2.5e-33  Score=230.84  Aligned_cols=253  Identities=17%  Similarity=0.128  Sum_probs=183.9

Q ss_pred             hhHHHHhhhccccccCCCCCCCCcchhHH-----------HHHHHHHhcCCC--C-CCcHHHHHHHHhcCCCCccceEeE
Q 048314           15 SSLCTKLRNFCRSSLNDRNSPRSKSVWSC-----------MRALMATVNSPY--S-PSRPLTLTSIVSRVSWTTDIEVSS   80 (274)
Q Consensus        15 ~~l~~~~~~f~~~~~~g~g~~~~g~vy~~-----------~~~~~~~~~~~~--~-~~~~~~e~~~l~~l~h~niv~l~~   80 (274)
                      ++-......|.....||+|.+  |.||++           ..++|+....+.  . .....+|+..++.++|||++.+..
T Consensus        17 r~rve~l~~ye~ig~Ig~GTY--G~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~   94 (438)
T KOG0666|consen   17 RERVEDLFEYEGIGKIGRGTY--GKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVK   94 (438)
T ss_pred             hhhHHHHHHhhccceeccccc--ceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHH
Confidence            333344566777899999999  999999           334444444331  1 233579999999999999999999


Q ss_pred             EEEe-CCcceEEEEeCCCCCHHHHHHhCC---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC--
Q 048314           81 VAMR-GSKPSTEAALDLPWDLAYIIFCSA---ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF--  154 (274)
Q Consensus        81 ~~~~-~~~~~lv~e~~~~gsL~~~l~~~~---~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~--  154 (274)
                      ++.+ +...+|++||+.+ +|...++-+.   ...++-..++.++-||+.|+.|||++   =++||||||.||++..+  
T Consensus        95 Vfl~~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N---WvlHRDLKPaNIlvmgdgp  170 (438)
T KOG0666|consen   95 VFLSHDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN---WVLHRDLKPANILVMGDGP  170 (438)
T ss_pred             HHhccCceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh---heeeccCCcceEEEeccCC
Confidence            9877 7789999999875 8888887542   24589999999999999999999999   79999999999999877  


Q ss_pred             --CcEEEeccccceecC--------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCCh---
Q 048314          155 --WTAKISDFGLAKLLS--------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKP---  214 (274)
Q Consensus       155 --~~~kl~d~g~~~~~~--------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~---  214 (274)
                        |.+||+|+|+++...              |.-|+|||.+.+. .|++..|+|+.||+..||++-.+.|.......   
T Consensus       171 erG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~  250 (438)
T KOG0666|consen  171 ERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTK  250 (438)
T ss_pred             ccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccC
Confidence              899999999998654              3459999999886 58999999999999999999888775431111   


Q ss_pred             --hhHHHHHHHHHHHhhh---------hhh-----------hhhcCC------ccCHHHHHHHHHHHHHhhccCCCCCCC
Q 048314          215 --EEIILTNWVYKCFINR---------ELN-----------KLVRGT------EVDKKNLENLVKVGLWCVQDEPALRPS  266 (274)
Q Consensus       215 --~~~~~~~~~~~~~~~~---------~~~-----------~~~~~~------~~~~~~~~~~~~li~~cl~~dp~~Rps  266 (274)
                        .......-+...+...         .++           +..++-      ......++...+|+..+|+.||.+|.|
T Consensus       251 ~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIt  330 (438)
T KOG0666|consen  251 NPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRIT  330 (438)
T ss_pred             CCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhcc
Confidence              0111111111110000         000           000000      000011234789999999999999999


Q ss_pred             hhhHHhh
Q 048314          267 MKCVVMM  273 (274)
Q Consensus       267 ~~evl~~  273 (274)
                      +.+.++.
T Consensus       331 a~qAleh  337 (438)
T KOG0666|consen  331 AEQALEH  337 (438)
T ss_pred             HHHHhcc
Confidence            9998863

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-34  Score=237.41  Aligned_cols=225  Identities=16%  Similarity=0.191  Sum_probs=186.8

Q ss_pred             HHhhhccccccCCCCCCCCcchhHH----------HHHHHHH-hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSC----------MRALMAT-VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~----------~~~~~~~-~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ...++|.-.+++|+|.|  |+|..|          ++..+|. +..+.....-+.|-++|...+||.+..+--.+...++
T Consensus       165 vTm~dFdfLKvLGkGTF--GKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~dr  242 (516)
T KOG0690|consen  165 VTMEDFDFLKVLGKGTF--GKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDR  242 (516)
T ss_pred             eccchhhHHHHhcCCcc--ceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCce
Confidence            35578888999999999  999877          3333332 3344556667789999999999999888777888999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      +|+||||+.||.|.-+|.+  ++.+++...+.+...|+.||.|||++   +|++||+|.+|.+++.+|++||+|||+++.
T Consensus       243 lCFVMeyanGGeLf~HLsr--er~FsE~RtRFYGaEIvsAL~YLHs~---~ivYRDlKLENLlLDkDGHIKitDFGLCKE  317 (516)
T KOG0690|consen  243 LCFVMEYANGGELFFHLSR--ERVFSEDRTRFYGAEIVSALGYLHSR---NIVYRDLKLENLLLDKDGHIKITDFGLCKE  317 (516)
T ss_pred             EEEEEEEccCceEeeehhh--hhcccchhhhhhhHHHHHHhhhhhhC---CeeeeechhhhheeccCCceEeeecccchh
Confidence            9999999999999988875  67899999999999999999999999   999999999999999999999999999964


Q ss_pred             -----------cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          168 -----------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       168 -----------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                                 .+++.|+|||++....|+..+|.|.+|+++|||++|+.||...+..    .+...+.       ..   
T Consensus       318 ~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~----kLFeLIl-------~e---  383 (516)
T KOG0690|consen  318 EIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHE----KLFELIL-------ME---  383 (516)
T ss_pred             cccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchh----HHHHHHH-------hh---
Confidence                       3478999999999999999999999999999999999999754221    1111111       11   


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCC
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRP  265 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rp  265 (274)
                       ...+|...+++.+.|+...|.+||.+|-
T Consensus       384 -d~kFPr~ls~eAktLLsGLL~kdP~kRL  411 (516)
T KOG0690|consen  384 -DLKFPRTLSPEAKTLLSGLLKKDPKKRL  411 (516)
T ss_pred             -hccCCccCCHHHHHHHHHHhhcChHhhc
Confidence             1135566677888999999999999995

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=5.3e-34  Score=250.45  Aligned_cols=244  Identities=17%  Similarity=0.171  Sum_probs=179.0

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc--
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK--   87 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~--   87 (274)
                      ..++|.....+|.|++  |.||+|..      .++|....    ....+.+.+|+.++++++||||+++++++...+.  
T Consensus        13 ~~~~y~~~~~ig~g~~--g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07851          13 VPDRYQNLSPVGSGAY--GQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLE   90 (343)
T ss_pred             ccCceEEEEEeccCCc--eEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccc
Confidence            4567888899999999  99998821      11222221    1223456689999999999999999998765544  


Q ss_pred             ----ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccc
Q 048314           88 ----PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG  163 (274)
Q Consensus        88 ----~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g  163 (274)
                          .++|+||+ +++|.+++..   ..+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||
T Consensus        91 ~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nill~~~~~~kL~dfg  163 (343)
T cd07851          91 DFQDVYLVTHLM-GADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIHSA---GIIHRDLKPSNIAVNEDCELKILDFG  163 (343)
T ss_pred             ccccEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEcccc
Confidence                89999998 5699999874   4699999999999999999999999   99999999999999999999999999


Q ss_pred             cceecC--------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH-------HHHH
Q 048314          164 LAKLLS--------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV-------YKCF  227 (274)
Q Consensus       164 ~~~~~~--------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~-------~~~~  227 (274)
                      ++....        +..|+|||.+.. ..++.++|+||||+++|++++|+.||...........+....       ....
T Consensus       164 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  243 (343)
T cd07851         164 LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKI  243 (343)
T ss_pred             ccccccccccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhc
Confidence            987543        456999998765 357889999999999999999999996431110000000000       0000


Q ss_pred             hhhhhhhhhcC---C------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 INRELNKLVRG---T------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 ~~~~~~~~~~~---~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ........+..   .      ......+..+.+++.+||+.||++|||+.+|++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         244 SSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             cchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence            00000000000   0      011123578999999999999999999999975

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-33  Score=264.96  Aligned_cols=238  Identities=21%  Similarity=0.255  Sum_probs=181.5

Q ss_pred             hHHHHhhhccccccCCCCCCCCcchhHH-------HHHHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEe--
Q 048314           16 SLCTKLRNFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--   84 (274)
Q Consensus        16 ~l~~~~~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--   84 (274)
                      ..+....+|..-.++|+|+|  |.||++       ..|+||+.-..  .......+|+.+|++|+|||||+++..|.+  
T Consensus       473 ~~SRY~~DFEEL~lLGkGGF--G~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~  550 (1351)
T KOG1035|consen  473 QFSRYLNDFEELELLGKGGF--GSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVEST  550 (1351)
T ss_pred             chhhHhhhhHHHHHhcCCCC--ceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccC
Confidence            34678899999999999999  999999       55666644432  334556799999999999999999764320  


Q ss_pred             ------------------C-------------------------------------------------------------
Q 048314           85 ------------------G-------------------------------------------------------------   85 (274)
Q Consensus        85 ------------------~-------------------------------------------------------------   85 (274)
                                        .                                                             
T Consensus       551 ~~~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~  630 (1351)
T KOG1035|consen  551 AELTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNL  630 (1351)
T ss_pred             CccccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccc
Confidence                              0                                                             


Q ss_pred             --------------------------------------CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 048314           86 --------------------------------------SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKG  127 (274)
Q Consensus        86 --------------------------------------~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~  127 (274)
                                                            -.+||-||||..-++++++.++.... .-...++++++|+.|
T Consensus       631 S~tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~-~~d~~wrLFreIlEG  709 (1351)
T KOG1035|consen  631 SNTSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNS-QRDEAWRLFREILEG  709 (1351)
T ss_pred             ccccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccch-hhHHHHHHHHHHHHH
Confidence                                                  01378899999988888888643221 467789999999999


Q ss_pred             HHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----------------------------CCCcCCCcc
Q 048314          128 ILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----------------------------DKGCMAPEC  178 (274)
Q Consensus       128 l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----------------------------~~~~~ape~  178 (274)
                      |.|+|+.   |||||||||.||+++.+..+||+|||++....                             |.-|+|||.
T Consensus       710 LaYIH~~---giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEl  786 (1351)
T KOG1035|consen  710 LAYIHDQ---GIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPEL  786 (1351)
T ss_pred             HHHHHhC---ceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHH
Confidence            9999999   99999999999999999999999999997621                             345999999


Q ss_pred             cccC---CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHH
Q 048314          179 YKRT---PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLW  255 (274)
Q Consensus       179 ~~~~---~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  255 (274)
                      +...   .|+.|+|+||+|++++||+.   ||.+.   -+.....    ..+.++.++..   ..+.....+.-..+|++
T Consensus       787 l~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~Ts---MERa~iL----~~LR~g~iP~~---~~f~~~~~~~e~slI~~  853 (1351)
T KOG1035|consen  787 LSDTSSNKYNSKIDMYSLGIVLFEMLY---PFGTS---MERASIL----TNLRKGSIPEP---ADFFDPEHPEEASLIRW  853 (1351)
T ss_pred             hcccccccccchhhhHHHHHHHHHHhc---cCCch---HHHHHHH----HhcccCCCCCC---cccccccchHHHHHHHH
Confidence            8764   49999999999999999974   56543   1111111    11122222221   12344556677899999


Q ss_pred             hhccCCCCCCChhhHHh
Q 048314          256 CVQDEPALRPSMKCVVM  272 (274)
Q Consensus       256 cl~~dp~~Rps~~evl~  272 (274)
                      |++.||.+||||.|+|+
T Consensus       854 Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  854 LLSHDPSKRPTATELLN  870 (1351)
T ss_pred             HhcCCCccCCCHHHHhh
Confidence            99999999999999986

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=2.7e-33  Score=233.47  Aligned_cols=184  Identities=16%  Similarity=0.029  Sum_probs=152.2

Q ss_pred             HHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 048314           60 PLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPI  139 (274)
Q Consensus        60 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i  139 (274)
                      +.+|...+....||||+++++++.+.+..+++|||+++|+|.+++..  ...+++.....++.|++.||.|||+.   ++
T Consensus        32 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~ql~~~l~~lH~~---~i  106 (237)
T cd05576          32 YSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK--FLNIPEECVKRWAAEMVVALDALHRE---GI  106 (237)
T ss_pred             hhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence            34555556666799999999999999999999999999999999975  34699999999999999999999999   99


Q ss_pred             ccCCCCCCceEEcCCCcEEEeccccceecC--------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccC
Q 048314          140 LHCDIKPQNILMDEFWTAKISDFGLAKLLS--------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDA  211 (274)
Q Consensus       140 ~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~  211 (274)
                      +|+|+||+||+++.++.++++|||.+....        +..|+|||......++.++|+||+|+++|+|++|..|+....
T Consensus       107 ~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~  186 (237)
T cd05576         107 VCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHP  186 (237)
T ss_pred             eccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCc
Confidence            999999999999999999999999764332        456999999988888999999999999999999998875321


Q ss_pred             CChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCCh
Q 048314          212 SKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSM  267 (274)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~  267 (274)
                      ...                  ... .....+...+..+.+++.+||+.||++|||+
T Consensus       187 ~~~------------------~~~-~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~  223 (237)
T cd05576         187 SGI------------------NTH-TTLNIPEWVSEEARSLLQQLLQFNPTERLGA  223 (237)
T ss_pred             hhc------------------ccc-cccCCcccCCHHHHHHHHHHccCCHHHhcCC
Confidence            100                  000 0001333456788999999999999999997

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.98  E-value=2.9e-33  Score=241.32  Aligned_cols=241  Identities=21%  Similarity=0.272  Sum_probs=177.2

Q ss_pred             cccCCCCCCCCcchhHHHH----HHHHHhcCCCCCCcHHHHHHHHhc--CCCCccceEeEEEEeCC----cceEEEEeCC
Q 048314           27 SSLNDRNSPRSKSVWSCMR----ALMATVNSPYSPSRPLTLTSIVSR--VSWTTDIEVSSVAMRGS----KPSTEAALDL   96 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~----~~~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~----~~~lv~e~~~   96 (274)
                      ..++|+|.|  |.||||..    +++|++.- ++.+.|.+|-++.+-  ++|+||+++++.-....    .++||+||-+
T Consensus       215 ~eli~~Grf--g~V~KaqL~~~~VAVKifp~-~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~  291 (534)
T KOG3653|consen  215 LELIGRGRF--GCVWKAQLDNRLVAVKIFPE-QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHP  291 (534)
T ss_pred             HHHhhcCcc--ceeehhhccCceeEEEecCH-HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeecc
Confidence            567999999  99999922    11222221 355678888888775  67999999999876544    7899999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC------CCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC------EPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~------~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      +|||.+||..   ..++|....+++..++.||+|||+..      +++|.|||+|+.|||+.++.++-|+|||++.... 
T Consensus       292 kGsL~dyL~~---ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p  368 (534)
T KOG3653|consen  292 KGSLCDYLKA---NTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEP  368 (534)
T ss_pred             CCcHHHHHHh---ccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecC
Confidence            9999999986   46999999999999999999999765      5689999999999999999999999999997543 


Q ss_pred             ------------CCCcCCCcccccCC-C-----ccccceeehhHhHHHHhhcCCCccccCCChhhHHH---------HHH
Q 048314          170 ------------DKGCMAPECYKRTP-I-----SVKADVYGYGIVLLETICCWENMEIDASKPEEIIL---------TNW  222 (274)
Q Consensus       170 ------------~~~~~ape~~~~~~-~-----~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~---------~~~  222 (274)
                                  |.+|||||++.+.. +     -.+.||||+|.++|||+++...+++...++....+         .+.
T Consensus       369 ~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~  448 (534)
T KOG3653|consen  369 GKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEE  448 (534)
T ss_pred             CCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHH
Confidence                        67899999987642 1     24799999999999999987666432222211111         111


Q ss_pred             HHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          223 VYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ++........+..+...=........+.+.+..||..||+.|.|+.-|-++
T Consensus       449 mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR  499 (534)
T KOG3653|consen  449 MQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEER  499 (534)
T ss_pred             HHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHH
Confidence            222111111111111000011335678999999999999999999887665

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.98  E-value=1.3e-32  Score=251.86  Aligned_cols=244  Identities=17%  Similarity=0.149  Sum_probs=194.5

Q ss_pred             hhhhhHHHHhhhccccccCCCCCCCCcchhHH------HHHHHHHhcCC-CCCCcHHHHHHHHhcCC-CCccceEeEEEE
Q 048314           12 IARSSLCTKLRNFCRSSLNDRNSPRSKSVWSC------MRALMATVNSP-YSPSRPLTLTSIVSRVS-WTTDIEVSSVAM   83 (274)
Q Consensus        12 ~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~~-~~~~~~~~e~~~l~~l~-h~niv~l~~~~~   83 (274)
                      ..++-+...+..|.....+|.|.+  |.||++      ..+++|+..-. ...++...|.++|+.+. |||++.++|++.
T Consensus         9 ~~~~~lpdp~d~~ei~evig~Gty--gkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~   86 (953)
T KOG0587|consen    9 IDLSSLPDPADIFEIIEVIGNGTY--GKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFI   86 (953)
T ss_pred             cchhhCCCCCCccEEEEEEeeccc--eeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEE
Confidence            344555566777888899999999  888887      33444433332 34555668999999886 999999999985


Q ss_pred             e-----CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 048314           84 R-----GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK  158 (274)
Q Consensus        84 ~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~k  158 (274)
                      -     +++++||||||.+||..|.+++..+..+.|..+.-+++.++.|+.+||.+   .++|||+|-.|||+..++.+|
T Consensus        87 k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~n---kviHRDikG~NiLLT~e~~VK  163 (953)
T KOG0587|consen   87 KKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNN---KVIHRDIKGQNVLLTENAEVK  163 (953)
T ss_pred             EecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhc---ceeeecccCceEEEeccCcEE
Confidence            3     67899999999999999999987777899999999999999999999999   999999999999999999999


Q ss_pred             Eeccccceec-----------CCCCcCCCcccccC-----CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH
Q 048314          159 ISDFGLAKLL-----------SDKGCMAPECYKRT-----PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW  222 (274)
Q Consensus       159 l~d~g~~~~~-----------~~~~~~ape~~~~~-----~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~  222 (274)
                      |.|||++...           +++.|||||++...     .|+..+|+||+|++..||..|.+|+..- .+...      
T Consensus       164 LvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~Dm-HPmra------  236 (953)
T KOG0587|consen  164 LVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDM-HPMRA------  236 (953)
T ss_pred             EeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCc-chhhh------
Confidence            9999998643           37899999988643     4678999999999999999999998522 11000      


Q ss_pred             HHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          223 VYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ++.  ...+.+.-+   ..|..++.++.++|..||.+|-++||++.++++
T Consensus       237 LF~--IpRNPPPkL---krp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  237 LFL--IPRNPPPKL---KRPKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             hcc--CCCCCCccc---cchhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence            000  011111000   247788999999999999999999999999875

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.98  E-value=2.9e-33  Score=226.88  Aligned_cols=237  Identities=18%  Similarity=0.187  Sum_probs=182.2

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHHH-------HHHH--hcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcce
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMRA-------LMAT--VNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~~-------~~~~--~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~   89 (274)
                      ..++..+...+|.|.-  |.|+++...       +|..  ..+++..++.+..+.++.+.+ .|.||+.+|+|..+...+
T Consensus        90 dindl~~l~dlGsGtc--G~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~  167 (391)
T KOG0983|consen   90 DINDLENLGDLGSGTC--GQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVF  167 (391)
T ss_pred             ChHHhhhHHhhcCCCc--cceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHH
Confidence            3455556777999999  999998221       2222  223355677788888887766 799999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +.||.|. -.++..+.+ -.+++|+..+-++...++.||.||-++  ++|+|||+||+|||++..|++|++|||++..+.
T Consensus       168 IcMelMs-~C~ekLlkr-ik~piPE~ilGk~tva~v~AL~YLKeK--H~viHRDvKPSNILlDe~GniKlCDFGIsGrlv  243 (391)
T KOG0983|consen  168 ICMELMS-TCAEKLLKR-IKGPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGNIKLCDFGISGRLV  243 (391)
T ss_pred             HHHHHHH-HHHHHHHHH-hcCCchHHhhhhhHHHHHHHHHHHHHh--cceeecccCccceEEccCCCEEeecccccceee
Confidence            9999884 355666655 556799999999999999999999876  599999999999999999999999999986543


Q ss_pred             ----------CCCcCCCccccc---CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          170 ----------DKGCMAPECYKR---TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       170 ----------~~~~~ape~~~~---~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                                .+.|||||.+-.   ..|+..+||||||++++||+||..||.......+..       ..+.+.. ...+
T Consensus       244 dSkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~l-------tkvln~e-PP~L  315 (391)
T KOG0983|consen  244 DSKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVL-------TKVLNEE-PPLL  315 (391)
T ss_pred             cccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHH-------HHHHhcC-CCCC
Confidence                      567999998853   368899999999999999999999998653332221       1111111 1222


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ++   ....+..+.+++..||++|+.+||-..++++.
T Consensus       316 ~~---~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  316 PG---HMGFSPDFQSFVKDCLTKDHRKRPKYNKLLEH  349 (391)
T ss_pred             Cc---ccCcCHHHHHHHHHHhhcCcccCcchHHHhcC
Confidence            21   12257889999999999999999999998863

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.98  E-value=5.9e-33  Score=222.83  Aligned_cols=241  Identities=16%  Similarity=0.162  Sum_probs=180.8

Q ss_pred             ccccccCCCCCCCCcchhHH-------HHHHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEe--------C
Q 048314           24 FCRSSLNDRNSPRSKSVWSC-------MRALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--------G   85 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--------~   85 (274)
                      |.....+|.|.|  |.|+++       .+++++.+-   ...-....++|+++|..++|+|++.++..|..        .
T Consensus        19 yek~~kigqGtf--geVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r   96 (376)
T KOG0669|consen   19 YEKLAKIGQGTF--GEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDR   96 (376)
T ss_pred             HHHHHhcCCchH--HHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccccc
Confidence            344667999999  999998       445555433   22345566899999999999999999998853        3


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      ..++|||.+|.+ +|...|.+ ....++..++.++..++..||.|+|..   .|+|||+|++|+|++.++.++|+|||++
T Consensus        97 ~t~ylVf~~ceh-DLaGlLsn-~~vr~sls~Ikk~Mk~Lm~GL~~iHr~---kilHRDmKaaNvLIt~dgilklADFGla  171 (376)
T KOG0669|consen   97 ATFYLVFDFCEH-DLAGLLSN-RKVRFSLSEIKKVMKGLMNGLYYIHRN---KILHRDMKAANVLITKDGILKLADFGLA  171 (376)
T ss_pred             ceeeeeHHHhhh-hHHHHhcC-ccccccHHHHHHHHHHHHHHHHHHHHh---hHHhhcccHhhEEEcCCceEEeeccccc
Confidence            358999999975 88888876 556799999999999999999999999   9999999999999999999999999999


Q ss_pred             eecC---------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh-
Q 048314          166 KLLS---------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI-  228 (274)
Q Consensus       166 ~~~~---------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~-  228 (274)
                      +...               |..|++||.+.+. .|+++.|+|.-||++.||.+|.+.++.. .+-....+...+..... 
T Consensus       172 r~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgn-teqqql~~Is~LcGs~tk  250 (376)
T KOG0669|consen  172 RAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGN-TEQQQLHLISQLCGSITK  250 (376)
T ss_pred             cceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCC-hHHHHHHHHHHHhccCCc
Confidence            6544               3458999988764 6899999999999999999999998754 22222222221111111 


Q ss_pred             -------hhhhhhhh-------------cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          229 -------NRELNKLV-------------RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       229 -------~~~~~~~~-------------~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                             +-.+-..+             ..+..|-....+..+|+..++..||.+||++.++++
T Consensus       251 evWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~aln  314 (376)
T KOG0669|consen  251 EVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALN  314 (376)
T ss_pred             ccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhc
Confidence                   00000001             000111112246789999999999999999999876

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=6.1e-32  Score=231.93  Aligned_cols=227  Identities=19%  Similarity=0.239  Sum_probs=175.9

Q ss_pred             cccCCCCCCCCcchhHH-------HHHHHH-HhcC-CCC------CCcHHHHHHHHhcCCCCccceEeEEEE-eCCcceE
Q 048314           27 SSLNDRNSPRSKSVWSC-------MRALMA-TVNS-PYS------PSRPLTLTSIVSRVSWTTDIEVSSVAM-RGSKPST   90 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~-------~~~~~~-~~~~-~~~------~~~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~l   90 (274)
                      ..++|+|+|  +.||++       .++++. .++. ..+      .+...+|..+-+.|.||-||++|+++. +.+.+|-
T Consensus       468 LhLLGrGGF--SEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCT  545 (775)
T KOG1151|consen  468 LHLLGRGGF--SEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCT  545 (775)
T ss_pred             HHHhccccH--HHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecccccee
Confidence            678999999  999999       222211 1111 111      122358999999999999999999984 6778999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEecccccee
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGLAKL  167 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~d~g~~~~  167 (274)
                      |+|||+|.+|+-||.+  ..-+++++.+.|+.||+.||.||... +++|||-||||.|||+.+   .|.+||.|||+++.
T Consensus       546 VLEYceGNDLDFYLKQ--hklmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKI  622 (775)
T KOG1151|consen  546 VLEYCEGNDLDFYLKQ--HKLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKI  622 (775)
T ss_pred             eeeecCCCchhHHHHh--hhhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhhh
Confidence            9999999999999986  56789999999999999999999986 789999999999999854   47789999999987


Q ss_pred             cC------------------CCCcCCCcccccC----CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH
Q 048314          168 LS------------------DKGCMAPECYKRT----PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK  225 (274)
Q Consensus       168 ~~------------------~~~~~ape~~~~~----~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~  225 (274)
                      +.                  +..|++||++-.+    ..+.++||||.||++|+++.|+.||....+.-  .        
T Consensus       623 MdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQ--d--------  692 (775)
T KOG1151|consen  623 MDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQ--D--------  692 (775)
T ss_pred             ccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHH--H--------
Confidence            54                  4568999988654    36889999999999999999999997542111  0        


Q ss_pred             HHhhhhhhhhhcCC----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHH
Q 048314          226 CFINRELNKLVRGT----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVV  271 (274)
Q Consensus       226 ~~~~~~~~~~~~~~----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl  271 (274)
                      .+.   ...++...    +..+..+.+..++|++||++.-++|....++.
T Consensus       693 ILq---eNTIlkAtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA  739 (775)
T KOG1151|consen  693 ILQ---ENTILKATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLA  739 (775)
T ss_pred             HHh---hhchhcceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHc
Confidence            111   11222222    12234556789999999999999999888775

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-33  Score=227.71  Aligned_cols=233  Identities=17%  Similarity=0.132  Sum_probs=175.8

Q ss_pred             cccCCCCCCCCcchhHH------HHHHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEEeCC
Q 048314           27 SSLNDRNSPRSKSVWSC------MRALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~------~~~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      ...||.|.|  |.|+|-      ..+++|.++..   .+..+++.|..+..+- +.||||++||.++.++..++.||+|.
T Consensus        69 lg~iG~G~f--G~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd  146 (361)
T KOG1006|consen   69 LGEIGNGAF--GTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD  146 (361)
T ss_pred             HHHhcCCcc--hhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh
Confidence            556999999  999988      33334444432   3456678888866655 58999999999999999999999996


Q ss_pred             CCCHHHHHHh---CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           97 PWDLAYIIFC---SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        97 ~gsL~~~l~~---~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                       -||+.+...   -.+..++++.+-.+..-.+.||.||-..  ..|||||+||+|||++..|.+||+|||++..+.    
T Consensus       147 -~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiA  223 (361)
T KOG1006|consen  147 -ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIA  223 (361)
T ss_pred             -hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheEEecCCCEeeecccchHhHHHHHH
Confidence             477666542   2456799999999999999999999876  589999999999999999999999999985432    


Q ss_pred             ------CCCcCCCcccccC--CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 ------DKGCMAPECYKRT--PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 ------~~~~~ape~~~~~--~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                            ...|||||.+...  .|+.++|+||+|++|+|+.||..|+..-.      .+.+.+.. +..+..+ ++....-
T Consensus       224 kT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~------svfeql~~-Vv~gdpp-~l~~~~~  295 (361)
T KOG1006|consen  224 KTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWD------SVFEQLCQ-VVIGDPP-ILLFDKE  295 (361)
T ss_pred             hhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHH------HHHHHHHH-HHcCCCC-eecCccc
Confidence                  4569999988643  48899999999999999999999996321      11111111 1111111 1111112


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+.+..+..+|..||.+|-..||+..++.+
T Consensus       296 ~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  296 CVHYSFSMVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             ccccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence            2345678999999999999999999999875

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1e-31  Score=223.65  Aligned_cols=231  Identities=16%  Similarity=0.204  Sum_probs=195.1

Q ss_pred             hhhccccccCCCCCCCCcchhHH----------HHHHHHH-hcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC----------MRALMAT-VNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~----------~~~~~~~-~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~   88 (274)
                      .++|.-..+||+|++  .+|-.+          ++.++|. ++..++.++...|-.+..+. +||.+|.+..++...+.+
T Consensus       249 l~df~ll~vigrgsy--akvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrl  326 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSY--AKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRL  326 (593)
T ss_pred             cccceeeeeecCcch--hhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceE
Confidence            357777889999999  888877          5566654 44446777778898888876 599999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee-
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL-  167 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~-  167 (274)
                      ++|.||++||+|--++++  .+.+|+...+.+...|+.||.|||++   ||++||||.+|+|++..+++||+|+|.++. 
T Consensus       327 ffvieyv~ggdlmfhmqr--qrklpeeharfys~ei~lal~flh~r---giiyrdlkldnvlldaeghikltdygmcke~  401 (593)
T KOG0695|consen  327 FFVIEYVNGGDLMFHMQR--QRKLPEEHARFYSAEICLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEG  401 (593)
T ss_pred             EEEEEEecCcceeeehhh--hhcCcHHHhhhhhHHHHHHHHHHhhc---CeeeeeccccceEEccCCceeecccchhhcC
Confidence            999999999999888875  56799999999999999999999999   999999999999999999999999999864 


Q ss_pred             ----------cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          168 ----------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       168 ----------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                                .+++.|.|||++.+..|+..+|.|++|++++||+.|+.||+..+....+.+..++++..+....+     
T Consensus       402 l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqi-----  476 (593)
T KOG0695|consen  402 LGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQI-----  476 (593)
T ss_pred             CCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhcc-----
Confidence                      33789999999999999999999999999999999999999776666556666665555433322     


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCC
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRP  265 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rp  265 (274)
                        .+|...+.....+++.-|++||.+|-
T Consensus       477 --riprslsvkas~vlkgflnkdp~erl  502 (593)
T KOG0695|consen  477 --RIPRSLSVKASHVLKGFLNKDPKERL  502 (593)
T ss_pred             --cccceeehhhHHHHHHhhcCCcHHhc
Confidence              25556666777888889999999985

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.97  E-value=2.6e-32  Score=238.29  Aligned_cols=236  Identities=14%  Similarity=0.161  Sum_probs=187.5

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHH------HHHHHHHhcC-C---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSC------MRALMATVNS-P---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~-~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      +++.-+-|. +.++|.|-|  |.||-|      ..+++|.+.+ +   ...+.+++|+.+|.+++||.||.+...|...+
T Consensus       560 ~stvYQif~-devLGSGQF--G~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~e  636 (888)
T KOG4236|consen  560 ISTVYQIFA-DEVLGSGQF--GTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPE  636 (888)
T ss_pred             HHHHHHhhh-HhhccCCcc--eeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCc
Confidence            444445555 889999999  999988      2222222221 1   33466789999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC---CcEEEeccc
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF---WTAKISDFG  163 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~---~~~kl~d~g  163 (274)
                      ..++|||-+.|-=|+..|.. ..+.|++..-+.+..||+-||+|||..   +|+|+||||+|+|+...   -.+||+|||
T Consensus       637 rvFVVMEKl~GDMLEMILSs-EkgRL~er~TkFlvtQIL~ALr~LH~k---nIvHCDLKPENVLLas~~~FPQvKlCDFG  712 (888)
T KOG4236|consen  637 RVFVVMEKLHGDMLEMILSS-EKGRLPERITKFLVTQILVALRYLHFK---NIVHCDLKPENVLLASASPFPQVKLCDFG  712 (888)
T ss_pred             eEEEEehhhcchHHHHHHHh-hcccchHHHHHHHHHHHHHHHHHhhhc---ceeeccCCchheeeccCCCCCceeecccc
Confidence            99999999865555555554 778899999999999999999999999   99999999999999654   468999999


Q ss_pred             cceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          164 LAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       164 ~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      +++.++          |+.|+|||+++...|...-|+||.|+++|.-++|..||.......+.          +++   -
T Consensus       713 fARiIgEksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQ----------IQN---A  779 (888)
T KOG4236|consen  713 FARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQ----------IQN---A  779 (888)
T ss_pred             ceeecchhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchhHH----------hhc---c
Confidence            998765          88999999999999999999999999999999999999643111110          011   1


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+.|.....+.++..+++|...|+..-.+|-|+.+-+.
T Consensus       780 aFMyPp~PW~eis~~AidlIn~LLqVkm~kRysvdk~ls  818 (888)
T KOG4236|consen  780 AFMYPPNPWSEISPEAIDLINNLLQVKMRKRYSVDKSLS  818 (888)
T ss_pred             ccccCCCchhhcCHHHHHHHHHHHHHHHHHhcchHhhcc
Confidence            123344455567788999999999999999999887653

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.97  E-value=1.2e-31  Score=253.66  Aligned_cols=139  Identities=17%  Similarity=0.155  Sum_probs=117.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|.....||.|+|  |.||+|..      .++|.+...     .....+.+|+.++..++||||+++++++...+..+
T Consensus         3 ~~~y~i~~~LG~G~f--g~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~   80 (669)
T cd05610           3 IEEFVIVKPISRGAF--GKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVY   80 (669)
T ss_pred             cCCEEEEEEEecCCC--eEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEE
Confidence            357778889999999  99998821      122222211     11245678999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      +||||+.+++|.+++..  .+.+++...+.++.|++.||.|||+.   +|+||||||+|||++.++.++|+|||+++
T Consensus        81 lVmEy~~g~~L~~li~~--~~~l~~~~~~~i~~qil~aL~yLH~~---gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          81 LVMEYLIGGDVKSLLHI--YGYFDEEMAVKYISEVALALDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             EEEeCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            99999999999999975  35689999999999999999999999   99999999999999999999999998753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3e-32  Score=236.87  Aligned_cols=225  Identities=16%  Similarity=0.102  Sum_probs=185.2

Q ss_pred             hhccccccCCCCCCCCcchhHH----------HHHHHH-HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC----------MRALMA-TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~----------~~~~~~-~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      .++....-+|-|+|  |+|-.+          ++.++| .+.+....+....|-++|...+.|.||++|.-|.+....|+
T Consensus       420 ~dl~~iaTLGvGgF--GRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYm  497 (732)
T KOG0614|consen  420 SDLKRIATLGVGGF--GRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYM  497 (732)
T ss_pred             hhhhhhhhcccCcc--ceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhh
Confidence            45555777999999  988765          233322 23333445556799999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      .||-|-||.|...|..  .+.++..+...++..+++|+.|||++   +||+|||||+|++++.+|.+||.|||+++.++ 
T Consensus       498 LmEaClGGElWTiLrd--Rg~Fdd~tarF~~acv~EAfeYLH~k---~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~  572 (732)
T KOG0614|consen  498 LMEACLGGELWTILRD--RGSFDDYTARFYVACVLEAFEYLHRK---GIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGS  572 (732)
T ss_pred             hHHhhcCchhhhhhhh--cCCcccchhhhhHHHHHHHHHHHHhc---CceeccCChhheeeccCCceEEeehhhHHHhcc
Confidence            9999999999999985  57899999999999999999999999   99999999999999999999999999997544 


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                               |+.|.|||++.....+..+|.||+|+++|||++|.+||+..+    .....+.+         .+-++...
T Consensus       573 g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~d----pmktYn~I---------LkGid~i~  639 (732)
T KOG0614|consen  573 GRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVD----PMKTYNLI---------LKGIDKIE  639 (732)
T ss_pred             CCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCc----hHHHHHHH---------Hhhhhhhh
Confidence                     789999999999999999999999999999999999997541    11111111         12223334


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCC
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPS  266 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps  266 (274)
                      +|........+||+.....+|.+|--
T Consensus       640 ~Pr~I~k~a~~Lik~LCr~~P~ERLG  665 (732)
T KOG0614|consen  640 FPRRITKTATDLIKKLCRDNPTERLG  665 (732)
T ss_pred             cccccchhHHHHHHHHHhcCcHhhhc
Confidence            66666778889999999999999964

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.97  E-value=1.7e-31  Score=221.34  Aligned_cols=201  Identities=21%  Similarity=0.179  Sum_probs=164.3

Q ss_pred             CCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 048314           57 PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECE  136 (274)
Q Consensus        57 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~  136 (274)
                      .+.+.+|++.+++++|+|++++++++......++++||+++++|.+++...  ..+++..++.++.+++.++.+||+.  
T Consensus        31 ~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~--  106 (244)
T smart00220       31 RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKKR--GRLSEDEARFYARQILSALEYLHSN--  106 (244)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHc--
Confidence            467889999999999999999999999999999999999999999999762  2389999999999999999999999  


Q ss_pred             CCcccCCCCCCceEEcCCCcEEEeccccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCC
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWEN  206 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p  206 (274)
                       +++|+|++|.||+++.++.++++|||.+....          ...|++||......++.++|+||||++++++++|..|
T Consensus       107 -~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p  185 (244)
T smart00220      107 -GIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPP  185 (244)
T ss_pred             -CeecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence             99999999999999999999999999986543          4569999999877888999999999999999999999


Q ss_pred             ccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          207 MEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      |......   ......    ......    .........+..+.+++.+||..+|++|||+.++++.
T Consensus       186 ~~~~~~~---~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~~  241 (244)
T smart00220      186 FPGDDQL---LELFKK----IGKPKP----PFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQH  241 (244)
T ss_pred             CCCCCcH---HHHHHH----HhccCC----CCccccccCCHHHHHHHHHHccCCchhccCHHHHhhC
Confidence            9642111   111110    000000    0000111155789999999999999999999999863

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-31  Score=205.75  Aligned_cols=239  Identities=16%  Similarity=0.147  Sum_probs=176.9

Q ss_pred             ccccccCCCCCCCCcchhHH------HHHHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           24 FCRSSLNDRNSPRSKSVWSC------MRALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      |.....||+|.+  |.|+++      ..++.|.++-    ...++..++|+.+|+.++|+|||+++++...+....+|+|
T Consensus         4 ydkmekigegty--gtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe   81 (292)
T KOG0662|consen    4 YDKMEKIGEGTY--GTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_pred             hHHHHhhcCCcc--eeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHH
Confidence            334556999999  999999      1112222221    1335667899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      ||. .+|..|... -++.++....+.++.|++.||.++|++   +++|||+||.|.++..++.+|++|||+++-.+    
T Consensus        82 ~cd-qdlkkyfds-lng~~d~~~~rsfmlqllrgl~fchsh---nvlhrdlkpqnllin~ngelkladfglarafgipvr  156 (292)
T KOG0662|consen   82 FCD-QDLKKYFDS-LNGDLDPEIVRSFMLQLLRGLGFCHSH---NVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVR  156 (292)
T ss_pred             Hhh-HHHHHHHHh-cCCcCCHHHHHHHHHHHHhhhhhhhhh---hhhhccCCcceEEeccCCcEEecccchhhhcCCceE
Confidence            996 489988876 457799999999999999999999999   99999999999999999999999999998665    


Q ss_pred             -------CCCcCCCcccccC-CCccccceeehhHhHHHHhhc-CCCccccCCChhhHHHHHHHHHH--Hhhhh---hhhh
Q 048314          170 -------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICC-WENMEIDASKPEEIILTNWVYKC--FINRE---LNKL  235 (274)
Q Consensus       170 -------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g-~~p~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~  235 (274)
                             +.-|.+|.++.+. .|+...|+||-||++.|+... ++.|... .-...  +...++..  ..+..   +..+
T Consensus       157 cysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~-dvddq--lkrif~~lg~p~ed~wps~t~l  233 (292)
T KOG0662|consen  157 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN-DVDDQ--LKRIFRLLGTPTEDQWPSMTKL  233 (292)
T ss_pred             eeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCC-cHHHH--HHHHHHHhCCCccccCCccccC
Confidence                   4458899988775 478999999999999999875 4445432 11111  11111111  11111   1111


Q ss_pred             hcCC------------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 VRGT------------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ~~~~------------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      -|-.            .+-+.....-.++++..+..+|.+|.++++.++
T Consensus       234 pdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalq  282 (292)
T KOG0662|consen  234 PDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQ  282 (292)
T ss_pred             CCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhc
Confidence            1111            111122234568999999999999999998875

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=4.2e-31  Score=225.03  Aligned_cols=222  Identities=18%  Similarity=0.166  Sum_probs=182.1

Q ss_pred             hhhccccccCCCCCCCCcchhHH-------HHHH---HHH-hcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC-------MRAL---MAT-VNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~-------~~~~---~~~-~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~   88 (274)
                      ..+|+-..++|+|+|  |+|..+       ..++   +|. +....+.+--+.|-++|.-.. -|.++++..++...+++
T Consensus       348 ~tDFnFl~VlGKGSF--GKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRL  425 (683)
T KOG0696|consen  348 ATDFNFLMVLGKGSF--GKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRL  425 (683)
T ss_pred             ecccceEEEeccCcc--ceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhhe
Confidence            346777899999999  999877       2222   221 112245566678888887654 67889999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee-
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL-  167 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~-  167 (274)
                      |.||||+.||+|--++++  -+.+-++..+.++..|+-||-+||++   +|++||||.+|++++.++++||+|||.++. 
T Consensus       426 yFVMEyvnGGDLMyhiQQ--~GkFKEp~AvFYAaEiaigLFFLh~k---gIiYRDLKLDNvmLd~eGHiKi~DFGmcKEn  500 (683)
T KOG0696|consen  426 YFVMEYVNGGDLMYHIQQ--VGKFKEPVAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN  500 (683)
T ss_pred             eeEEEEecCchhhhHHHH--hcccCCchhhhhhHHHHHHhhhhhcC---CeeeeeccccceEeccCCceEeeeccccccc
Confidence            999999999999999886  56788999999999999999999999   999999999999999999999999999864 


Q ss_pred             ----------cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          168 ----------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       168 ----------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                                .+|+.|+|||++...+|+..+|.||||++||||+.|.+||+..+..    .+.            ..+.+
T Consensus       501 i~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~----elF------------~aI~e  564 (683)
T KOG0696|consen  501 IFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED----ELF------------QAIME  564 (683)
T ss_pred             ccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHH----HHH------------HHHHH
Confidence                      3378999999999999999999999999999999999999865221    111            11111


Q ss_pred             CC-ccCHHHHHHHHHHHHHhhccCCCCCC
Q 048314          238 GT-EVDKKNLENLVKVGLWCVQDEPALRP  265 (274)
Q Consensus       238 ~~-~~~~~~~~~~~~li~~cl~~dp~~Rp  265 (274)
                      .. .+|...+.+..+++...|.+.|.+|-
T Consensus       565 hnvsyPKslSkEAv~ickg~ltK~P~kRL  593 (683)
T KOG0696|consen  565 HNVSYPKSLSKEAVAICKGLLTKHPGKRL  593 (683)
T ss_pred             ccCcCcccccHHHHHHHHHHhhcCCcccc
Confidence            11 36777788889999999999999985

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.8e-31  Score=226.82  Aligned_cols=239  Identities=22%  Similarity=0.193  Sum_probs=177.1

Q ss_pred             hhccccccCCCCCCCCcchhHH----HHHHHHHhcCCCCCCcHHHHHHHHh--cCCCCccceEeEEEEeC----CcceEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC----MRALMATVNSPYSPSRPLTLTSIVS--RVSWTTDIEVSSVAMRG----SKPSTE   91 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~----~~~~~~~~~~~~~~~~~~~e~~~l~--~l~h~niv~l~~~~~~~----~~~~lv   91 (274)
                      +...-...||+|.|  |.||+|    ..+++|++.+.+..+ +.+|.++.+  .++|+||+.+++.-..+    .+++||
T Consensus       211 rqI~L~e~IGkGRy--GEVwrG~wrGe~VAVKiF~srdE~S-WfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLv  287 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRF--GEVWRGRWRGEDVAVKIFSSRDERS-WFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLV  287 (513)
T ss_pred             heeEEEEEecCccc--cceeeccccCCceEEEEecccchhh-hhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEe
Confidence            33444678999999  999999    445566666654444 555666555  57999999999986432    378999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcC-----CCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDE-----CEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~-----~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ++|=++|||.|||.+   ..++-...++++..++.||++||..     .+|.|-|||||+.|||+..++.+-|+|+|++.
T Consensus       288 TdYHe~GSL~DyL~r---~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv  364 (513)
T KOG2052|consen  288 TDYHEHGSLYDYLNR---NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  364 (513)
T ss_pred             eecccCCcHHHHHhh---ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeE
Confidence            999999999999975   5799999999999999999999954     37889999999999999999999999999986


Q ss_pred             ecC---------------CCCcCCCcccccCC------CccccceeehhHhHHHHhhc----------CCCcccc-CCCh
Q 048314          167 LLS---------------DKGCMAPECYKRTP------ISVKADVYGYGIVLLETICC----------WENMEID-ASKP  214 (274)
Q Consensus       167 ~~~---------------~~~~~ape~~~~~~------~~~~~Di~s~G~~l~el~~g----------~~p~~~~-~~~~  214 (274)
                      ...               |.+|||||++....      .-..+||||||.++||+.-+          ..||... +..+
T Consensus       365 ~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DP  444 (513)
T KOG2052|consen  365 RHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDP  444 (513)
T ss_pred             EecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCC
Confidence            433               56799999886432      12569999999999998742          2455321 1111


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhH
Q 048314          215 EEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCV  270 (274)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ev  270 (274)
                      ...    -+...+--......+.++-.+.+....+.++|+.||..||..|-|+=.+
T Consensus       445 s~e----eMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALri  496 (513)
T KOG2052|consen  445 SFE----EMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRI  496 (513)
T ss_pred             CHH----HHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHH
Confidence            111    1112222223333333334566778899999999999999999887544

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-30  Score=238.06  Aligned_cols=230  Identities=21%  Similarity=0.194  Sum_probs=169.0

Q ss_pred             hhccccccCCCCCCCCcchhHH-----HHHHHHHhcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC-----MRALMATVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~-----~~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      .-|+...++|.|.-|+. ||+|     .+|+|.....  ..+-..+||..|+.-. |||||++++.-.+....|+..|.|
T Consensus       509 ~~~~~~eilG~Gs~Gt~-Vf~G~ye~R~VAVKrll~e--~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC  585 (903)
T KOG1027|consen  509 LFFSPKEILGYGSNGTV-VFRGVYEGREVAVKRLLEE--FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELC  585 (903)
T ss_pred             eeeccHHHcccCCCCcE-EEEEeeCCceehHHHHhhH--hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHh
Confidence            34666777877777443 6777     3444443333  2233458999999886 999999999999999999999998


Q ss_pred             CCCCHHHHHHhC-CCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-----CCcEEEeccccceec
Q 048314           96 LPWDLAYIIFCS-AER-NPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-----FWTAKISDFGLAKLL  168 (274)
Q Consensus        96 ~~gsL~~~l~~~-~~~-~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-----~~~~kl~d~g~~~~~  168 (274)
                      . .||++++... .+. ...-...+.+..|++.||++||+.   +|+||||||.||||..     ...++|+|||+++..
T Consensus       586 ~-~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl---~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl  661 (903)
T KOG1027|consen  586 A-CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSL---KIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKL  661 (903)
T ss_pred             h-hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhc---ccccccCCCceEEEEccCCCcceeEEeccccccccc
Confidence            5 6999999873 111 112144577889999999999998   9999999999999975     256899999999764


Q ss_pred             C--------------CCCcCCCcccccCCCccccceeehhHhHHHHhhc-CCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          169 S--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICC-WENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       169 ~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      .              +.+|.|||++....-+..+||+|+||++|++++| .+||.....  .+.++        ..++. 
T Consensus       662 ~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~--R~~NI--------l~~~~-  730 (903)
T KOG1027|consen  662 AGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLE--RQANI--------LTGNY-  730 (903)
T ss_pred             CCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHH--hhhhh--------hcCcc-
Confidence            3              6789999999988888899999999999998886 899963310  00000        00100 


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+..= +...++  ...+||.+|++.+|..|||+.+|+.
T Consensus       731 ~L~~L-~~~~d~--eA~dLI~~ml~~dP~~RPsa~~VL~  766 (903)
T KOG1027|consen  731 TLVHL-EPLPDC--EAKDLISRMLNPDPQLRPSATDVLN  766 (903)
T ss_pred             ceeee-ccCchH--HHHHHHHHhcCCCcccCCCHHHHhC
Confidence            00000 111122  7889999999999999999999985

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3.9e-30  Score=228.74  Aligned_cols=194  Identities=19%  Similarity=0.157  Sum_probs=161.2

Q ss_pred             hccccccCCCCCCCCcchhHH----------HHHH-HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC----------MRAL-MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~----------~~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      -|-..+-||-|.|  |.|-.+          ++.. |+.+-.+........|..||.....+.||+||-.|.+++.+|+|
T Consensus       630 mFvkik~iGvGAF--GeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFV  707 (1034)
T KOG0608|consen  630 MFVKIKTIGVGAF--GEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFV  707 (1034)
T ss_pred             ceEEEeeeccccc--ceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEE
Confidence            4556788999999  888766          1111 22222223445566899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |+|++||++-.+|-+  -+.|++...+.++.++.-|+.+.|..   |+|||||||+||||+.+|++||+|||++....  
T Consensus       708 MdYIPGGDmMSLLIr--mgIFeE~LARFYIAEltcAiesVHkm---GFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWT  782 (1034)
T KOG0608|consen  708 MDYIPGGDMMSLLIR--MGIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWT  782 (1034)
T ss_pred             EeccCCccHHHHHHH--hccCHHHHHHHHHHHHHHHHHHHHhc---cceecccCccceEEccCCceeeeeccccccceec
Confidence            999999999999875  56799999999999999999999998   99999999999999999999999999985322  


Q ss_pred             ---------------------------------------------------CCCcCCCcccccCCCccccceeehhHhHH
Q 048314          170 ---------------------------------------------------DKGCMAPECYKRTPISVKADVYGYGIVLL  198 (274)
Q Consensus       170 ---------------------------------------------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~  198 (274)
                                                                         ++.|+|||++....|+..+|.||.||+||
T Consensus       783 HdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~  862 (1034)
T KOG0608|consen  783 HDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILY  862 (1034)
T ss_pred             cccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHH
Confidence                                                               45699999999999999999999999999


Q ss_pred             HHhhcCCCccccCCChhhHHHHHHH
Q 048314          199 ETICCWENMEIDASKPEEIILTNWV  223 (274)
Q Consensus       199 el~~g~~p~~~~~~~~~~~~~~~~~  223 (274)
                      ||+.|+.||-...-......+.+|.
T Consensus       863 em~~g~~pf~~~tp~~tq~kv~nw~  887 (1034)
T KOG0608|consen  863 EMLVGQPPFLADTPGETQYKVINWR  887 (1034)
T ss_pred             HHhhCCCCccCCCCCcceeeeeehh
Confidence            9999999997553333344445553

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.96  E-value=5.2e-30  Score=232.78  Aligned_cols=242  Identities=17%  Similarity=0.099  Sum_probs=168.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH----------------------HHHHHhcC----------------CCCCCcHH
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR----------------------ALMATVNS----------------PYSPSRPL   61 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~----------------------~~~~~~~~----------------~~~~~~~~   61 (274)
                      ..++|...+.||+|+|  |.||+|..                      +++|.+..                ....+.+.
T Consensus       143 ~~d~F~i~~~LG~GgF--G~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~  220 (507)
T PLN03224        143 SSDDFQLRDKLGGGNF--GITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGM  220 (507)
T ss_pred             cccCceEeeEeecCCC--eEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhH
Confidence            3568999999999999  99998831                      01111110                01123344


Q ss_pred             HHHHHHhcCCCCcc-----ceEeEEEEe--------CCcceEEEEeCCCCCHHHHHHhCC--------------------
Q 048314           62 TLTSIVSRVSWTTD-----IEVSSVAMR--------GSKPSTEAALDLPWDLAYIIFCSA--------------------  108 (274)
Q Consensus        62 ~e~~~l~~l~h~ni-----v~l~~~~~~--------~~~~~lv~e~~~~gsL~~~l~~~~--------------------  108 (274)
                      .|+.++.+++|.|+     ++++++|..        .+..+|||||+++++|.+++....                    
T Consensus       221 vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~  300 (507)
T PLN03224        221 VEAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDN  300 (507)
T ss_pred             HHHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhh
Confidence            57778888877654     778888753        356899999999999999997421                    


Q ss_pred             --CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------------CCCcC
Q 048314          109 --ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------------DKGCM  174 (274)
Q Consensus       109 --~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------------~~~~~  174 (274)
                        ...++|..++.++.|++.+|.|||+.   +++||||||+||+++.++.++|+|||++....            ++.|+
T Consensus       301 ~~~~~~~~~~~~~i~~ql~~aL~~lH~~---~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~  377 (507)
T PLN03224        301 MPQDKRDINVIKGVMRQVLTGLRKLHRI---GIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYS  377 (507)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCccee
Confidence              11246788899999999999999999   99999999999999999999999999985431            46799


Q ss_pred             CCcccccCC--------------------C--ccccceeehhHhHHHHhhcCC-CccccCCChhhH-----HHHHHHHHH
Q 048314          175 APECYKRTP--------------------I--SVKADVYGYGIVLLETICCWE-NMEIDASKPEEI-----ILTNWVYKC  226 (274)
Q Consensus       175 ape~~~~~~--------------------~--~~~~Di~s~G~~l~el~~g~~-p~~~~~~~~~~~-----~~~~~~~~~  226 (274)
                      +||.+....                    +  ..+.|+||+||++++|++|.. |+........+.     .+..|.  .
T Consensus       378 aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r--~  455 (507)
T PLN03224        378 PPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWR--M  455 (507)
T ss_pred             ChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHH--h
Confidence            999875322                    1  124699999999999999875 654221111000     011110  0


Q ss_pred             HhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCC---CCCCChhhHHhh
Q 048314          227 FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEP---ALRPSMKCVVMM  273 (274)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp---~~Rps~~evl~~  273 (274)
                      .....    .+ -......+...++++.+||..+|   .+|+|++|+++.
T Consensus       456 ~~~~~----~~-~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~H  500 (507)
T PLN03224        456 YKGQK----YD-FSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSH  500 (507)
T ss_pred             hcccC----CC-cccccccChHHHHHHHHHhccCCCCcccCCCHHHHhCC
Confidence            00000    00 01223456789999999999866   689999999863

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.96  E-value=3.4e-30  Score=238.75  Aligned_cols=241  Identities=18%  Similarity=0.078  Sum_probs=152.0

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHHH----------HHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEE------EE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMRA----------LMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSV------AM   83 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~~----------~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~------~~   83 (274)
                      ..++|...+.||+|+|  |.||+|...          ++|........+.+..|  .+....+.++..++..      +.
T Consensus       130 ~~~~y~l~~~LG~G~F--G~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~  205 (566)
T PLN03225        130 KKDDFVLGKKLGEGAF--GVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNE--RVRRACPNSCADFVYGFLEPVSSK  205 (566)
T ss_pred             ccCCeEEeEEEeeCCC--eEEEEEEEcCCccccCcEEEEEEecccchhHHHHHH--HHHhhchhhHHHHHHhhhcccccc
Confidence            5678888999999999  999998321          11111111111111111  1222223333333222      23


Q ss_pred             eCCcceEEEEeCCCCCHHHHHHhCCCC------------------CCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCC
Q 048314           84 RGSKPSTEAALDLPWDLAYIIFCSAER------------------NPYWNQRVRIALDVAKGILYLHDECEPPILHCDIK  145 (274)
Q Consensus        84 ~~~~~~lv~e~~~~gsL~~~l~~~~~~------------------~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~  145 (274)
                      +....++|+||+++++|.+++......                  ......+..++.|++.||.|||+.   +|+|||||
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~---gIiHRDLK  282 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST---GIVHRDVK  282 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC---CEEeCcCC
Confidence            566789999999999999999753210                  012334567899999999999999   99999999


Q ss_pred             CCceEEcC-CCcEEEeccccceec------------CCCCcCCCcccccC----------------------CCccccce
Q 048314          146 PQNILMDE-FWTAKISDFGLAKLL------------SDKGCMAPECYKRT----------------------PISVKADV  190 (274)
Q Consensus       146 ~~nil~~~-~~~~kl~d~g~~~~~------------~~~~~~ape~~~~~----------------------~~~~~~Di  190 (274)
                      |+|||++. ++.+||+|||+++..            .++.|+|||.+...                      .++.++||
T Consensus       283 P~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DV  362 (566)
T PLN03225        283 PQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDI  362 (566)
T ss_pred             HHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCccc
Confidence            99999985 578999999998643            25689999965322                      13345699


Q ss_pred             eehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh-hhhhhhhhcCC---------ccCHHHHHHHHHHHHHhhccC
Q 048314          191 YGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI-NRELNKLVRGT---------EVDKKNLENLVKVGLWCVQDE  260 (274)
Q Consensus       191 ~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~li~~cl~~d  260 (274)
                      |||||++|||+++..++...     ...+...+..... .......+.+.         +.........++|+.+||+.|
T Consensus       363 wSlGviL~el~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~d  437 (566)
T PLN03225        363 YSAGLIFLQMAFPNLRSDSN-----LIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFK  437 (566)
T ss_pred             HHHHHHHHHHHhCcCCCchH-----HHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCC
Confidence            99999999999876654321     1111100000000 00001111111         011112234568999999999


Q ss_pred             CCCCCChhhHHh
Q 048314          261 PALRPSMKCVVM  272 (274)
Q Consensus       261 p~~Rps~~evl~  272 (274)
                      |++|||+.|+++
T Consensus       438 P~kR~ta~e~L~  449 (566)
T PLN03225        438 GRQRISAKAALA  449 (566)
T ss_pred             cccCCCHHHHhC
Confidence            999999999986

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3e-29  Score=217.30  Aligned_cols=246  Identities=18%  Similarity=0.180  Sum_probs=181.4

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-CCCCcHHHHHHHHhcCC-----C---CccceEeEEEEe--
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-YSPSRPLTLTSIVSRVS-----W---TTDIEVSSVAMR--   84 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-~~~~~~~~e~~~l~~l~-----h---~niv~l~~~~~~--   84 (274)
                      ++|...+.+|=|.|  ++||.+..      +++|+.++. .-.+..+.||++|++++     |   ..||+|++.|..  
T Consensus        78 gRY~v~rKLGWGHF--STVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsG  155 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHF--STVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSG  155 (590)
T ss_pred             ceEEEEEecccccc--ceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecC
Confidence            45666888999999  99999921      122233332 33455679999999985     2   248999999864  


Q ss_pred             --CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC--------
Q 048314           85 --GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF--------  154 (274)
Q Consensus        85 --~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~--------  154 (274)
                        +.+.|||+|+. |-+|..++.....++++...++.|+.|++.||.|||..|  +|||.||||+|||+..+        
T Consensus       156 pNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~~~e~~~~~~~  232 (590)
T KOG1290|consen  156 PNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLCSTEIDPAKDA  232 (590)
T ss_pred             CCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeeeccccchhhhh
Confidence              45899999987 568999999888899999999999999999999999998  99999999999998110        


Q ss_pred             --------------------------------------------------------------------------------
Q 048314          155 --------------------------------------------------------------------------------  154 (274)
Q Consensus       155 --------------------------------------------------------------------------------  154 (274)
                                                                                                      
T Consensus       233 ~~a~e~~~~~p~~s~s~~~t~~d~~~~~~~~~~s~~~~k~~~kk~~r~~~~~~~~l~~~~~~~~~~~~~s~n~~~~~n~~  312 (590)
T KOG1290|consen  233 REAGEATTSLPKMSPSAVSTRPDALQRMAAEPMSKSKFKKMKKKLKRQAKKLEASLAGLEGIEEEPNQESYNNEPRINGN  312 (590)
T ss_pred             hhhccccccCCCCCcccccccccccchhhccccchhhHHHHHHHHhhhhhhhhhhhcccccccccccccccccccCCCcc
Confidence                                                                                            


Q ss_pred             ------------------------------------------------------------------------------Cc
Q 048314          155 ------------------------------------------------------------------------------WT  156 (274)
Q Consensus       155 ------------------------------------------------------------------------------~~  156 (274)
                                                                                                    ..
T Consensus       313 ~~~v~~~~~~~~~~~~~~~~n~~~k~~e~~~~~~~sl~~~~~~~~~t~~~~~~~s~~s~~~~~~n~~v~p~~~~~~~di~  392 (590)
T KOG1290|consen  313 ESTVERSTLEEDSNENGNRENLPIKSPENFRGNNTSLPESQLRDSATPSDGSLSSPSSPGTIASNPLVNPDIPLPECDIR  392 (590)
T ss_pred             ccchhhcccccccccccCCccccccCccccccccccccchhcccccccccccccCcCCccccccccccCCCCCCCcccee
Confidence                                                                                          01


Q ss_pred             EEEeccccceecC--------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhh---HHHHH----
Q 048314          157 AKISDFGLAKLLS--------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEE---IILTN----  221 (274)
Q Consensus       157 ~kl~d~g~~~~~~--------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~---~~~~~----  221 (274)
                      +||+|||-+.+..        |..|+|||++.+..|+..+||||++|+++||+||.-.|.++......   ..+..    
T Consensus       393 vKIaDlGNACW~~khFT~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~rDEDHiA~i~EL  472 (590)
T KOG1290|consen  393 VKIADLGNACWVHKHFTEDIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGENYSRDEDHIALIMEL  472 (590)
T ss_pred             EEEeeccchhhhhhhhchhhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCCCCccHHHHHHHHHH
Confidence            2444444443321        45599999999999999999999999999999999999876443311   11111    


Q ss_pred             ---HHHHHHhhhh-----------h-----------hhhh-cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          222 ---WVYKCFINRE-----------L-----------NKLV-RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       222 ---~~~~~~~~~~-----------~-----------~~~~-~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         ..+.....+.           +           .+++ +.-..+.+.+.++.+++.-||+.+|++||||++.++
T Consensus       473 LG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~  549 (590)
T KOG1290|consen  473 LGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLK  549 (590)
T ss_pred             HhhccHHHHhcCcchHhhhccccceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccccHHHHhc
Confidence               1111111111           1           1111 111578888999999999999999999999999875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=3.6e-29  Score=241.65  Aligned_cols=186  Identities=16%  Similarity=0.176  Sum_probs=139.7

Q ss_pred             HhcCCC-CccceEeEEE-------EeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 048314           67 VSRVSW-TTDIEVSSVA-------MRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP  138 (274)
Q Consensus        67 l~~l~h-~niv~l~~~~-------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~  138 (274)
                      .+.++| +||.+++++|       .+...++.++|++ +++|.+++.. ....+++..++.++.||+.||.|||++   +
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---g  100 (793)
T PLN00181         26 SKSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDN-PDRSVDAFECFHVFRQIVEIVNAAHSQ---G  100 (793)
T ss_pred             cchhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhc-ccccccHHHHHHHHHHHHHHHHHHHhC---C
Confidence            446677 7899999987       2334567888876 5699999975 345699999999999999999999999   9


Q ss_pred             cccCCCCCCceEEcC-------------------CCcEEEeccccceec---------------------------CCCC
Q 048314          139 ILHCDIKPQNILMDE-------------------FWTAKISDFGLAKLL---------------------------SDKG  172 (274)
Q Consensus       139 i~h~dl~~~nil~~~-------------------~~~~kl~d~g~~~~~---------------------------~~~~  172 (274)
                      |+||||||+|||++.                   ++.+|++|||+++..                           +++.
T Consensus       101 IvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  180 (793)
T PLN00181        101 IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSW  180 (793)
T ss_pred             eeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcc
Confidence            999999999999953                   456778888876521                           2445


Q ss_pred             cCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHH
Q 048314          173 CMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKV  252 (274)
Q Consensus       173 ~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (274)
                      |+|||++....++.++|||||||++|||++|..|+...     .......     ..    ....+  ..........++
T Consensus       181 Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~-----~~~~~~~-----~~----~~~~~--~~~~~~~~~~~~  244 (793)
T PLN00181        181 YTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEK-----SRTMSSL-----RH----RVLPP--QILLNWPKEASF  244 (793)
T ss_pred             eEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhH-----HHHHHHH-----HH----hhcCh--hhhhcCHHHHHH
Confidence            99999999889999999999999999999988876421     0001000     00    00111  111123445788


Q ss_pred             HHHhhccCCCCCCChhhHHhh
Q 048314          253 GLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       253 i~~cl~~dp~~Rps~~evl~~  273 (274)
                      +.+||+.||.+|||+.|+++.
T Consensus       245 ~~~~L~~~P~~Rps~~eil~h  265 (793)
T PLN00181        245 CLWLLHPEPSCRPSMSELLQS  265 (793)
T ss_pred             HHHhCCCChhhCcChHHHhhc
Confidence            899999999999999999863

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2e-29  Score=200.01  Aligned_cols=241  Identities=14%  Similarity=0.165  Sum_probs=177.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHHH------HHHHhcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEe--CCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMRA------LMATVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMR--GSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~~------~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~lv   91 (274)
                      ..+|...+.+|+|.+  +.|+.|...      ++|.++ +-..+...+|+++|..|. ||||+++++...+  ...+.|+
T Consensus        37 ~ddYeivrk~GRGKY--SEVFeg~~~~~~eK~ViKiLK-PVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLi  113 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKY--SEVFEGINITNNEKCVIKILK-PVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLI  113 (338)
T ss_pred             cchHHHHHHHcCccH--hhHhcccccCCCceEEEeeec-hHHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhH
Confidence            456666788999999  999999321      122111 122345779999999999 9999999999876  4568999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEeccccceecC-
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKISDFGLAKLLS-  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~d~g~~~~~~-  169 (274)
                      +||..+-++.....     .|+...++.++.+++.||.|+|+.   ||+|||+||.|++++. ...++|+|+|++-+.. 
T Consensus       114 FE~v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCHS~---GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp  185 (338)
T KOG0668|consen  114 FEYVNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCHSM---GIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHP  185 (338)
T ss_pred             hhhhccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHHhc---CcccccCCcceeeechhhceeeeeecchHhhcCC
Confidence            99999977776653     588889999999999999999999   9999999999999984 5679999999996643 


Q ss_pred             ---------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHH-H---------HHHHHHH--H
Q 048314          170 ---------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEII-L---------TNWVYKC--F  227 (274)
Q Consensus       170 ---------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~-~---------~~~~~~~--~  227 (274)
                               +..|..||.+-. ..|+..-|+|||||++..|+..+.||........... +         ...+...  .
T Consensus       186 ~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~  265 (338)
T KOG0668|consen  186 GKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQID  265 (338)
T ss_pred             CceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccC
Confidence                     344678998765 4588999999999999999999999976544333221 1         1111100  0


Q ss_pred             hhhhhhhhhcCC-----------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 INRELNKLVRGT-----------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 ~~~~~~~~~~~~-----------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+....+++...           +.-.-.+++..+++...|..|..+|||+.|...
T Consensus       266 Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~  321 (338)
T KOG0668|consen  266 LDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMA  321 (338)
T ss_pred             CChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhc
Confidence            111122222111           011112478899999999999999999999764

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.95  E-value=4.8e-28  Score=195.84  Aligned_cols=193  Identities=25%  Similarity=0.328  Sum_probs=165.0

Q ss_pred             CCCCCCCCcchhHHHHH------HHHHhcCCCC---CCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCH
Q 048314           30 NDRNSPRSKSVWSCMRA------LMATVNSPYS---PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDL  100 (274)
Q Consensus        30 ~g~g~~~~g~vy~~~~~------~~~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL  100 (274)
                      +|.|.+  |.||++...      ++|.......   .+.+.+|+.+++.++|++++++++++......++++|++++++|
T Consensus         1 l~~g~~--~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l   78 (215)
T cd00180           1 LGEGGF--GTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSL   78 (215)
T ss_pred             CCcCCc--eEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcH
Confidence            578888  899988332      1222222211   25688999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEeccccceecC----------
Q 048314          101 AYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKISDFGLAKLLS----------  169 (274)
Q Consensus       101 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~d~g~~~~~~----------  169 (274)
                      .+++... ...+++..+..++.+++.++.+||+.   +++|+|++|.||+++. +..++++|||.+....          
T Consensus        79 ~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~~---~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~  154 (215)
T cd00180          79 KDLLKEN-EGKLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIV  154 (215)
T ss_pred             HHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhccc
Confidence            9999862 24689999999999999999999999   9999999999999999 8999999999887543          


Q ss_pred             -CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHH
Q 048314          170 -DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLE  247 (274)
Q Consensus       170 -~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (274)
                       ...|++||..... ..+.+.|+|++|++++++                                              .
T Consensus       155 ~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l----------------------------------------------~  188 (215)
T cd00180         155 GTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL----------------------------------------------P  188 (215)
T ss_pred             CCCCccChhHhcccCCCCchhhhHHHHHHHHHH----------------------------------------------H
Confidence             4568999988776 778999999999999998                                              3


Q ss_pred             HHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          248 NLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       248 ~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+.+++..|++.||++|||+.++++.|
T Consensus       189 ~~~~~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         189 ELKDLIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             HHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence            578899999999999999999999764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.95  E-value=1.6e-27  Score=189.61  Aligned_cols=157  Identities=21%  Similarity=0.161  Sum_probs=120.2

Q ss_pred             CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec------CCC
Q 048314           98 WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL------SDK  171 (274)
Q Consensus        98 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~------~~~  171 (274)
                      |||.+++.. .+..+++..++.++.|++.||.|||+.   +      ||+||+++.++.+++  ||.+...      +++
T Consensus         1 GsL~~~l~~-~~~~l~~~~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~~~--fG~~~~~~~~~~~g~~   68 (176)
T smart00750        1 VSLADILEV-RGRPLNEEEIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLLKL--DGSVAFKTPEQSRVDP   68 (176)
T ss_pred             CcHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccceee--ccceEeeccccCCCcc
Confidence            789999986 345699999999999999999999998   5      999999999999999  9988653      367


Q ss_pred             CcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHH--HH
Q 048314          172 GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLE--NL  249 (274)
Q Consensus       172 ~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  249 (274)
                      .|+|||++....++.++|||||||++|||++|+.||.......  ..+....     .............+.....  .+
T Consensus        69 ~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  141 (176)
T smart00750       69 YFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELS--AILEILL-----NGMPADDPRDRSNLESVSAARSF  141 (176)
T ss_pred             cccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhc--HHHHHHH-----HHhccCCccccccHHHHHhhhhH
Confidence            8999999999999999999999999999999999996431111  1111111     1111000000012222333  69


Q ss_pred             HHHHHHhhccCCCCCCChhhHHhh
Q 048314          250 VKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       250 ~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .+++.+||+.||++|||+.|+++.
T Consensus       142 ~~~i~~cl~~~p~~Rp~~~~ll~~  165 (176)
T smart00750      142 ADFMRVCASRLPQRREAANHYLAH  165 (176)
T ss_pred             HHHHHHHHhcccccccCHHHHHHH
Confidence            999999999999999999999875

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=6.5e-29  Score=201.83  Aligned_cols=242  Identities=20%  Similarity=0.191  Sum_probs=182.1

Q ss_pred             hccccccCCCCCCCCcchhHH-------HHHHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC-----c
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC-------MRALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS-----K   87 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----~   87 (274)
                      +....+=||-|.|  |.||.+       .++.+|..+.   --+.+++.+|+++|.-++|.|++..++......     .
T Consensus        54 Di~PDRPIGYGAF--GVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqE  131 (449)
T KOG0664|consen   54 DIQPDRPIGYGAF--GVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQE  131 (449)
T ss_pred             cCCCCCcccccce--eEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHH
Confidence            4455788999999  999966       3334443322   234577889999999999999999988765432     4


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .|+++|+|. .+|...+..  .+.++-..++-+.-||+.||.|||+.   +|+||||||.|.|+..+..+||+|||+++.
T Consensus       132 iYV~TELmQ-SDLHKIIVS--PQ~Ls~DHvKVFlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLARv  205 (449)
T KOG0664|consen  132 LYVLTELMQ-SDLHKIIVS--PQALTPDHVKVFVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLART  205 (449)
T ss_pred             HHHHHHHHH-hhhhheecc--CCCCCcchhhhhHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEecccccccc
Confidence            688999885 478888874  67899999999999999999999999   999999999999999999999999999987


Q ss_pred             cC------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH--------HH
Q 048314          168 LS------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY--------KC  226 (274)
Q Consensus       168 ~~------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~--------~~  226 (274)
                      ..            +..|.|||++.+. .|+...||||.||++.|++.++..|+.. .+.....+..-+.        +.
T Consensus       206 ee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq-~PiqQL~lItdLLGTPs~EaMr~  284 (449)
T KOG0664|consen  206 WDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAA-GPIEQLQMIIDLLGTPSQEAMKY  284 (449)
T ss_pred             cchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhcc-ChHHHHHHHHHHhCCCcHHHHHH
Confidence            55            5579999998875 5899999999999999999888888765 3333332221111        00


Q ss_pred             HhhhhhhhhhcCC------------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          227 FINRELNKLVRGT------------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       227 ~~~~~~~~~~~~~------------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ..++....+++..            ..+.....+..++...++..||..|.+.++.+..
T Consensus       285 ACEGAk~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~  343 (449)
T KOG0664|consen  285 ACEGAKNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQH  343 (449)
T ss_pred             HhhhhHHHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhccc
Confidence            1112223333322            1122334566788889999999999999887643

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.95  E-value=8e-28  Score=198.92  Aligned_cols=210  Identities=20%  Similarity=0.140  Sum_probs=160.3

Q ss_pred             CCCCcHHHHHHHHhcCCCCccceEeEEEEeC------CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Q 048314           55 YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG------SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGI  128 (274)
Q Consensus        55 ~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l  128 (274)
                      ...++.-+|...+..++|+||++++.++.-.      ...++|||+|. +||.+++..    .++-.++..++-|++-|+
T Consensus        57 ~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~-~nl~~vi~~----elDH~tis~i~yq~~~~i  131 (369)
T KOG0665|consen   57 THAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMD-ANLCQVILM----ELDHETISYILYQMLCGI  131 (369)
T ss_pred             ccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHhhh-hHHHHHHHH----hcchHHHHHHHHHHHHHH
Confidence            4456667899999999999999999998643      35699999996 599999873    578889999999999999


Q ss_pred             HHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----------CCCcCCCcccccCCCccccceeehhHhHH
Q 048314          129 LYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLL  198 (274)
Q Consensus       129 ~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~  198 (274)
                      +|||+.   +|+||||||+||++..+..+|+.|||+++...          +..|.|||.+.+..+...+||||.||++.
T Consensus       132 k~lhs~---~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~g  208 (369)
T KOG0665|consen  132 KHLHSA---GIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG  208 (369)
T ss_pred             HHHHhc---ceeecccCcccceecchhheeeccchhhcccCcccccCchhheeeccCchheeccCCcccchhhhhhhHHH
Confidence            999999   99999999999999999999999999997644          44689999999888999999999999999


Q ss_pred             HHhhcCCCccccCCChhhHHHHH---------------HHHHHHhh------hhhhhhhcCC------ccCHHHHHHHHH
Q 048314          199 ETICCWENMEIDASKPEEIILTN---------------WVYKCFIN------RELNKLVRGT------EVDKKNLENLVK  251 (274)
Q Consensus       199 el~~g~~p~~~~~~~~~~~~~~~---------------~~~~~~~~------~~~~~~~~~~------~~~~~~~~~~~~  251 (274)
                      ||++|.-.|...+.-........               .......+      ....+.+...      +.+......+.+
T Consensus       209 Eli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ard  288 (369)
T KOG0665|consen  209 ELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARD  288 (369)
T ss_pred             HHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHH
Confidence            99999988864311111000000               00000000      0001111111      223334567889


Q ss_pred             HHHHhhccCCCCCCChhhHHh
Q 048314          252 VGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       252 li~~cl~~dp~~Rps~~evl~  272 (274)
                      ++.+||-.||++|.|+.++|.
T Consensus       289 ll~~MLvi~pe~Risv~daL~  309 (369)
T KOG0665|consen  289 LLSKMLVIDPEKRISVDDALR  309 (369)
T ss_pred             HHHHhhccChhhcccHHHHhc
Confidence            999999999999999999985

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.95  E-value=3.2e-28  Score=217.64  Aligned_cols=235  Identities=16%  Similarity=0.090  Sum_probs=185.7

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHH------HHHHHHhc--CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCM------RALMATVN--SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ....+|.-...+|.|.+  |.|||+.      .+++|.++  ...+.+-..+|+-+++..+|||||-++|.+......++
T Consensus        12 nP~ddyellqrvgsgTy--gdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwi   89 (829)
T KOG0576|consen   12 NPQDDYELLQRVGSGTY--GDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWI   89 (829)
T ss_pred             CCccchhheeeecCCcc--cchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEE
Confidence            34567777888999999  9999992      22233222  22445556689999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee---
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL---  167 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~---  167 (274)
                      .||||.+|+|++..+.  .+++++.++..+++..+.||.|||+.   +=+|||+|-.||++.+.+.+|++|||.+..   
T Consensus        90 cMEycgggslQdiy~~--TgplselqiayvcRetl~gl~ylhs~---gk~hRdiKGanilltd~gDvklaDfgvsaqita  164 (829)
T KOG0576|consen   90 CMEYCGGGSLQDIYHV--TGPLSELQIAYVCRETLQGLKYLHSQ---GKIHRDIKGANILLTDEGDVKLADFGVSAQITA  164 (829)
T ss_pred             EEEecCCCcccceeee--cccchhHHHHHHHhhhhccchhhhcC---CcccccccccceeecccCceeecccCchhhhhh
Confidence            9999999999999875  57899999999999999999999999   999999999999999999999999999853   


Q ss_pred             --------cCCCCcCCCcccc---cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          168 --------LSDKGCMAPECYK---RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       168 --------~~~~~~~ape~~~---~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                              ++++.|||||+..   .+.|...+|+|++|+...|+-.-.+|.... .+-.  .+     ....+.    ..
T Consensus       165 ti~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdl-hpmr--~l-----~LmTkS----~~  232 (829)
T KOG0576|consen  165 TIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDL-HPMR--AL-----FLMTKS----GF  232 (829)
T ss_pred             hhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccccc-chHH--HH-----HHhhcc----CC
Confidence                    4488999999874   456889999999999999987666664311 0000  00     111111    11


Q ss_pred             cCC--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 RGT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 ~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ++.  +.+..+.+.+-++++.|+.++|++|||+..++.
T Consensus       233 qpp~lkDk~kws~~fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  233 QPPTLKDKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             CCCcccCCccchHHHHHHHHHHhcCCCccCCChhhhee
Confidence            111  345677889999999999999999999988764

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.94  E-value=4.4e-28  Score=189.51  Aligned_cols=189  Identities=22%  Similarity=0.190  Sum_probs=149.9

Q ss_pred             HhhhccccccCCCCCCCCcchhH------HHHHHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcce
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWS------CMRALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~------~~~~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~   89 (274)
                      ..++.....-+|+|.+  |.|-+      |.++++|.+...   +..++.++|+.+..+. ..|.+|.++|...+.+..+
T Consensus        44 ~ad~L~~i~elGrGay--G~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvw  121 (282)
T KOG0984|consen   44 PADDLVGIEELGRGAY--GVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVW  121 (282)
T ss_pred             chhhhhhhhhhcCCcc--chhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEE
Confidence            3344444566999999  54433      344443333322   3445567888876664 5899999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           90 TEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      +.||.|. -||+.|..+-  .++.+++..+-+++..+.+||.|||++  ..++|||+||+|||++.+|.+|++|||.+..
T Consensus       122 IcME~M~-tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~k--L~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~  198 (282)
T KOG0984|consen  122 ICMELMD-TSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSK--LSVIHRDVKPSNILINYDGQVKICDFGISGY  198 (282)
T ss_pred             EeHHHhh-hhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHH--hhhhhccCCcceEEEccCCcEEEccccccee
Confidence            9999986 5888777643  556799999999999999999999997  5899999999999999999999999999865


Q ss_pred             cC----------CCCcCCCccccc----CCCccccceeehhHhHHHHhhcCCCccccCCC
Q 048314          168 LS----------DKGCMAPECYKR----TPISVKADVYGYGIVLLETICCWENMEIDASK  213 (274)
Q Consensus       168 ~~----------~~~~~ape~~~~----~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~  213 (274)
                      +.          ...|||||.+..    ..|+.++||||+|+++.||.+++.||..-..+
T Consensus       199 L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tp  258 (282)
T KOG0984|consen  199 LVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGTP  258 (282)
T ss_pred             ehhhhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCCH
Confidence            43          456999998753    36889999999999999999999999755333

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.94  E-value=1.1e-27  Score=211.18  Aligned_cols=181  Identities=18%  Similarity=0.167  Sum_probs=151.8

Q ss_pred             hhhccccccCCCCCCCCcchhHH----------HHHHHH--H-hcCC-CCC--CcHHHHHHHHhcCC---CCccceEeEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC----------MRALMA--T-VNSP-YSP--SRPLTLTSIVSRVS---WTTDIEVSSV   81 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~----------~~~~~~--~-~~~~-~~~--~~~~~e~~~l~~l~---h~niv~l~~~   81 (274)
                      ..+|...+.+|.|.|  |.|+.+          .+++.|  + .... .++  -..-.||.+|+.++   |+||+|++.+
T Consensus       560 ~s~yttlq~lG~GAy--GkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdf  637 (772)
T KOG1152|consen  560 FSDYTTLQPLGEGAY--GKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDF  637 (772)
T ss_pred             cccceeeeecccccc--ceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhhe
Confidence            345777888999999  999988          222222  1 1111 111  11237999999998   9999999999


Q ss_pred             EEeCCcceEEEEeC-CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 048314           82 AMRGSKPSTEAALD-LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKIS  160 (274)
Q Consensus        82 ~~~~~~~~lv~e~~-~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~  160 (274)
                      |++++..+|+||-= ++.+|.+++..  +..+++.+..-++.|++.|+++||+.   +|+|||||-+|+.++.+|.+||+
T Consensus       638 FEddd~yyl~te~hg~gIDLFd~IE~--kp~m~E~eAk~IFkQV~agi~hlh~~---~ivhrdikdenvivd~~g~~kli  712 (772)
T KOG1152|consen  638 FEDDDYYYLETEVHGEGIDLFDFIEF--KPRMDEPEAKLIFKQVVAGIKHLHDQ---GIVHRDIKDENVIVDSNGFVKLI  712 (772)
T ss_pred             eecCCeeEEEecCCCCCcchhhhhhc--cCccchHHHHHHHHHHHhcccccccc---CceecccccccEEEecCCeEEEe
Confidence            99999999999964 56789999985  56799999999999999999999999   99999999999999999999999


Q ss_pred             ccccceec---------CCCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCcc
Q 048314          161 DFGLAKLL---------SDKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENME  208 (274)
Q Consensus       161 d~g~~~~~---------~~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~  208 (274)
                      |||.+...         +|..|.|||++.+.+| +...|||++|++||.++....||.
T Consensus       713 dfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  713 DFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             eccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            99998654         3778999999999887 578999999999999999999985

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.93  E-value=1.5e-27  Score=208.22  Aligned_cols=183  Identities=16%  Similarity=0.103  Sum_probs=151.9

Q ss_pred             hhhccccccCCCCCCCCcchhHH------HHHHHHHhcCCCC-CCcHHHHHHHHhcCC------CCccceEeEEEEeCCc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC------MRALMATVNSPYS-PSRPLTLTSIVSRVS------WTTDIEVSSVAMRGSK   87 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~~~~-~~~~~~e~~~l~~l~------h~niv~l~~~~~~~~~   87 (274)
                      -..|......|+|.|  +.|..+      .-+++|++++.+. -+.=+.|+++|.+|+      -.|.++++.-|...++
T Consensus       431 D~RY~V~~~~GkGvF--s~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknH  508 (752)
T KOG0670|consen  431 DSRYEVQGYTGKGVF--STVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNH  508 (752)
T ss_pred             cceeEEEecccccee--eeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcce
Confidence            345666788999999  999888      2233445554322 233468999999996      2568999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcEEEeccccc
Q 048314           88 PSTEAALDLPWDLAYIIFCS-AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKISDFGLA  165 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~-~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~d~g~~  165 (274)
                      +|||+|-. ..+|.++|... .+-+|....+..++.|+..||..|-..   +++|.||||+|||+... ..+||||||.+
T Consensus       509 LClVFE~L-slNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c---~vlHaDIKPDNiLVNE~k~iLKLCDfGSA  584 (752)
T KOG0670|consen  509 LCLVFEPL-SLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKC---GVLHADIKPDNILVNESKNILKLCDFGSA  584 (752)
T ss_pred             eEEEehhh-hchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhc---CeeecccCccceEeccCcceeeeccCccc
Confidence            99999965 57999999875 334689999999999999999999998   99999999999999754 46799999999


Q ss_pred             eecC---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccc
Q 048314          166 KLLS---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEI  209 (274)
Q Consensus       166 ~~~~---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~  209 (274)
                      ....         +..|.|||++.+.+|++..|+||.||+||||.||+..|..
T Consensus       585 ~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG  637 (752)
T KOG0670|consen  585 SFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPG  637 (752)
T ss_pred             cccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCC
Confidence            7765         3359999999999999999999999999999999999864

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.93  E-value=7.4e-26  Score=193.33  Aligned_cols=243  Identities=16%  Similarity=0.154  Sum_probs=182.0

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHHHH---------HHHhcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcce
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMRAL---------MATVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~~~---------~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~   89 (274)
                      ..+.|...+.||.|+|  +.||++...-         .|.+.....+++..+|+++|..+. +.||+++.+++..+++..
T Consensus        34 ~~~~~~~v~kigeGsF--ssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~  111 (418)
T KOG1167|consen   34 ISNAYKVVNKIGEGSF--SSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVA  111 (418)
T ss_pred             hhhhhhhhccccccch--hhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhccCCeeE
Confidence            3456667899999999  9999993322         333444467888999999999997 999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEeccccceec
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKISDFGLAKLL  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~d~g~~~~~  168 (274)
                      +|+||+++-...+++..     ++...+..++..+..||.++|+.   ||+|||+||.|++... .+.-.|.|||++...
T Consensus       112 ivlp~~~H~~f~~l~~~-----l~~~~i~~Yl~~ll~Al~~~h~~---GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~  183 (418)
T KOG1167|consen  112 IVLPYFEHDRFRDLYRS-----LSLAEIRWYLRNLLKALAHLHKN---GIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRY  183 (418)
T ss_pred             EEecccCccCHHHHHhc-----CCHHHHHHHHHHHHHHhhhhhcc---CccccCCCccccccccccCCceEEechhHHHH
Confidence            99999999999999875     78999999999999999999999   9999999999999974 355678999998611


Q ss_pred             C-------------------------------------------------------CCCcCCCcccccC-CCccccceee
Q 048314          169 S-------------------------------------------------------DKGCMAPECYKRT-PISVKADVYG  192 (274)
Q Consensus       169 ~-------------------------------------------------------~~~~~ape~~~~~-~~~~~~Di~s  192 (274)
                      .                                                       |++|.|||++... ..+.++||||
T Consensus       184 d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws  263 (418)
T KOG1167|consen  184 DGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWS  263 (418)
T ss_pred             HhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceee
Confidence            0                                                       5679999998765 4678999999


Q ss_pred             hhHhHHHHhhcCCCccccCCChhhH----HHHHH--HHH-HHhhhh------------------hh----hhhcCC----
Q 048314          193 YGIVLLETICCWENMEIDASKPEEI----ILTNW--VYK-CFINRE------------------LN----KLVRGT----  239 (274)
Q Consensus       193 ~G~~l~el~~g~~p~~~~~~~~~~~----~~~~~--~~~-~~~~~~------------------~~----~~~~~~----  239 (274)
                      .|++++-+++++.||..........    .+..+  +.. ....+.                  ..    +.+.+.    
T Consensus       264 ~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n  343 (418)
T KOG1167|consen  264 AGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPN  343 (418)
T ss_pred             ccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccc
Confidence            9999999999999996432211110    00000  000 000000                  00    001110    


Q ss_pred             ----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 ----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                          ...+..+..+.+++.+|++.||.+|.|+++.|.
T Consensus       344 ~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALk  380 (418)
T KOG1167|consen  344 TEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALK  380 (418)
T ss_pred             eeeccccccccHHHHHHHHHHccCChhhcccHHHHhc
Confidence                111222347899999999999999999999885

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.92  E-value=1.1e-25  Score=184.87  Aligned_cols=179  Identities=17%  Similarity=0.149  Sum_probs=150.2

Q ss_pred             cccccCCCCCCCCcchhHHHHH------HHHHhcCC--C-CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           25 CRSSLNDRNSPRSKSVWSCMRA------LMATVNSP--Y-SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        25 ~~~~~~g~g~~~~g~vy~~~~~------~~~~~~~~--~-~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      .....+|.|++  +.||++...      ++|.....  . ..+.+.+|++.+++++|+|++++++++......++++||+
T Consensus         2 ~~~~~i~~g~~--~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   79 (225)
T smart00221        2 ELGKKLGEGAF--GKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYC   79 (225)
T ss_pred             ceeeEeecCCC--eEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEecc
Confidence            34567899999  999999221      12222221  1 3456778999999999999999999999989999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecCC-----
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-----  170 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~~-----  170 (274)
                      ++++|.+++.... ..+++..+..++.+++.++.+||+.   +++|+|+++.|++++.++.++++|||.+.....     
T Consensus        80 ~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~  155 (225)
T smart00221       80 EGGDLFDYLRKKG-GKLSEEEARFYLRQILEALEYLHSL---GIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAAL  155 (225)
T ss_pred             CCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeCceeeEecCccccc
Confidence            9999999998632 2289999999999999999999999   999999999999999999999999998875542     


Q ss_pred             -------CCcCCCccc-ccCCCccccceeehhHhHHHHhhcCCCccc
Q 048314          171 -------KGCMAPECY-KRTPISVKADVYGYGIVLLETICCWENMEI  209 (274)
Q Consensus       171 -------~~~~ape~~-~~~~~~~~~Di~s~G~~l~el~~g~~p~~~  209 (274)
                             ..|++||.+ ....++.++|+|+||+++++|++|+.||..
T Consensus       156 ~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      156 LKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             ccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence                   348999988 556678899999999999999999999954

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.91  E-value=2.6e-24  Score=191.78  Aligned_cols=198  Identities=21%  Similarity=0.280  Sum_probs=157.9

Q ss_pred             HhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCc-ccCCCC
Q 048314           67 VSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPI-LHCDIK  145 (274)
Q Consensus        67 l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i-~h~dl~  145 (274)
                      |+.+.|.|+.+++|.+.+++..++|.+||..|+|.|.+.. ....++|.....+.++++.||.|+|..   ++ .|+.++
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~-~~~~~d~~F~~s~~rdi~~Gl~ylh~s---~i~~hg~l~   76 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSN-EDIKLDYFFILSFIRDISKGLAYLHNS---PIGYHGALK   76 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhc-cccCccHHHHHHHHHHHHHHHHHHhcC---cceeeeeec
Confidence            4678999999999999999999999999999999999987 567799999999999999999999987   54 999999


Q ss_pred             CCceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCC-------CccccceeehhHhHHHHhhcCC
Q 048314          146 PQNILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTP-------ISVKADVYGYGIVLLETICCWE  205 (274)
Q Consensus       146 ~~nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~-------~~~~~Di~s~G~~l~el~~g~~  205 (274)
                      +.|++++..|.+|++|||+.....             ..-|.|||.+....       .+.++|+||||++++|++++..
T Consensus        77 s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~  156 (484)
T KOG1023|consen   77 SSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSG  156 (484)
T ss_pred             cccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccC
Confidence            999999999999999999987763             23489999987631       3677999999999999999999


Q ss_pred             CccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH-HHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          206 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK-KNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ||...........+...+..     .-.+..+|.-... +..+.+..++..||..+|++||+++++-..
T Consensus       157 ~~~~~~~~~~~~eii~~~~~-----~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~  220 (484)
T KOG1023|consen  157 PFDLRNLVEDPDEIILRVKK-----GGSNPFRPSIELLNELPPELLLLVARCWEEIPEKRPSIEQIRSK  220 (484)
T ss_pred             ccccccccCChHHHHHHHHh-----cCCCCcCcchhhhhhcchHHHHHHHHhcccChhhCccHHHHHhh
Confidence            99865333332222222111     1112222221111 444579999999999999999999998653

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.90  E-value=3.7e-25  Score=179.66  Aligned_cols=234  Identities=14%  Similarity=0.113  Sum_probs=165.2

Q ss_pred             hhhccccccCCCCCCCCcchhHH------HHHH-HHHhcCCCCCCcHHHHHHHHhcCC-CCccceEeEE-EEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC------MRAL-MATVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSV-AMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~------~~~~-~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~-~~~~~~~~lv   91 (274)
                      .+.|.....+|.|-|  |.+-.+      ..++ +..-+.....++|.+|...--.|. |.||+.-|.+ |...+...++
T Consensus        23 ~d~y~I~k~lgeG~F--gkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~  100 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRF--GKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFV  100 (378)
T ss_pred             hhhhhHHHHhcccce--eeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEe
Confidence            466777889999999  887766      2222 222233245677888887666665 8999999886 4567778899


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc--CCCcEEEeccccceecC
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD--EFWTAKISDFGLAKLLS  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~--~~~~~kl~d~g~~~~~~  169 (274)
                      +||++.|+|.+-+.   ..++.+..-+.++.|+++|+.|+|+.   +++|||||.+|||+-  +...+|++|||.....+
T Consensus       101 qE~aP~gdL~snv~---~~GigE~~~K~v~~ql~SAi~fMHsk---nlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g  174 (378)
T KOG1345|consen  101 QEFAPRGDLRSNVE---AAGIGEANTKKVFAQLLSAIEFMHSK---NLVHRDLKAENILIFDADFYRVKLCDFGLTRKVG  174 (378)
T ss_pred             eccCccchhhhhcC---cccccHHHHHHHHHHHHHHHHHhhcc---chhhcccccceEEEecCCccEEEeeecccccccC
Confidence            99999999988774   35688888999999999999999999   999999999999984  44589999999987665


Q ss_pred             --------CCCcCCCccccc---C--CCccccceeehhHhHHHHhhcCCCccccCCC-hhhHHHHHHHHHHHhhhhhhhh
Q 048314          170 --------DKGCMAPECYKR---T--PISVKADVYGYGIVLLETICCWENMEIDASK-PEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       170 --------~~~~~ape~~~~---~--~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                              ...|.+||.+..   +  ...+..|+|.||++++.+++|..||+..... ........|.....  ...++.
T Consensus       175 ~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~--~~~P~~  252 (378)
T KOG1345|consen  175 TTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKN--PALPKK  252 (378)
T ss_pred             ceehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccC--ccCchh
Confidence                    345788886642   2  2357899999999999999999999843111 11222222322211  111111


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhH
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCV  270 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ev  270 (274)
                      ++      ..++.+..+-++-|..+|++|--+.++
T Consensus       253 F~------~fs~~a~r~Fkk~lt~~~~drcki~~~  281 (378)
T KOG1345|consen  253 FN------PFSEKALRLFKKSLTPRFKDRCKIWTA  281 (378)
T ss_pred             hc------ccCHHHHHHHHHhcCCcccccchhHHH
Confidence            11      123445566666778888887444433

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.89  E-value=1.3e-23  Score=171.00  Aligned_cols=202  Identities=20%  Similarity=0.199  Sum_probs=158.5

Q ss_pred             CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 048314           56 SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC  135 (274)
Q Consensus        56 ~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~  135 (274)
                      ..++|-.|.-.|+-+.||||+.++|.|...+++.++..||+.|||+..+++...-..+..+.++++.+++.|++|||+. 
T Consensus       230 isrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhsl-  308 (448)
T KOG0195|consen  230 ISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL-  308 (448)
T ss_pred             hcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc-
Confidence            4567889999999999999999999999999999999999999999999975555578899999999999999999987 


Q ss_pred             CCCcccCCCCCCceEEcCCCcEEEe--ccccc----eecCCCCcCCCcccccCCCc---cccceeehhHhHHHHhhcCCC
Q 048314          136 EPPILHCDIKPQNILMDEFWTAKIS--DFGLA----KLLSDKGCMAPECYKRTPIS---VKADVYGYGIVLLETICCWEN  206 (274)
Q Consensus       136 ~~~i~h~dl~~~nil~~~~~~~kl~--d~g~~----~~~~~~~~~ape~~~~~~~~---~~~Di~s~G~~l~el~~g~~p  206 (274)
                      .+-|..-.|.+..++++++.+.+|+  |-.++    .....+.|++||.++..+-+   ..+|+|||.+++||+.|+.-|
T Consensus       309 ep~ipr~~lns~hvmidedltarismad~kfsfqe~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevp  388 (448)
T KOG0195|consen  309 EPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQEVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVP  388 (448)
T ss_pred             chhhhhhhcccceEEecchhhhheecccceeeeeccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccc
Confidence            3335555789999999999887764  32222    22337889999999876533   579999999999999999999


Q ss_pred             ccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHH
Q 048314          207 MEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVV  271 (274)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl  271 (274)
                      |.....-.....       .     ..+-++. .+|+..+..+.+|+.-|.+.||.+||.+..++
T Consensus       389 fadlspmecgmk-------i-----aleglrv-~ippgis~hm~klm~icmnedpgkrpkfdmiv  440 (448)
T KOG0195|consen  389 FADLSPMECGMK-------I-----ALEGLRV-HIPPGISRHMNKLMNICMNEDPGKRPKFDMIV  440 (448)
T ss_pred             cccCCchhhhhh-------h-----hhccccc-cCCCCccHHHHHHHHHHhcCCCCcCCCcceeh
Confidence            963311111100       0     0111122 36777888899999999999999999988764

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=6.2e-22  Score=183.72  Aligned_cols=201  Identities=17%  Similarity=0.139  Sum_probs=155.7

Q ss_pred             HHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 048314           60 PLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPI  139 (274)
Q Consensus        60 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i  139 (274)
                      ...|+.+-..++|||++..+..+.+.....-.||||++ +|..++..  ...+....+-.++.|++.|++|+|+.   |+
T Consensus       368 i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE~~~~-Dlf~~~~~--~~~~~~~e~~c~fKqL~~Gv~y~h~~---Gi  441 (601)
T KOG0590|consen  368 ITSEFCIGSSLSHPNIIETLDIVQEIDGILQSMEYCPY-DLFSLVMS--NGKLTPLEADCFFKQLLRGVKYLHSM---GL  441 (601)
T ss_pred             hhhheeecccccCCchhhhHHHHhhcccchhhhhcccH-HHHHHHhc--ccccchhhhhHHHHHHHHHHHHHHhc---Cc
Confidence            34577777789999998888877776655555999998 99999975  34688889999999999999999999   99


Q ss_pred             ccCCCCCCceEEcCCCcEEEeccccceecC---------------CCCcCCCcccccCCCc-cccceeehhHhHHHHhhc
Q 048314          140 LHCDIKPQNILMDEFWTAKISDFGLAKLLS---------------DKGCMAPECYKRTPIS-VKADVYGYGIVLLETICC  203 (274)
Q Consensus       140 ~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---------------~~~~~ape~~~~~~~~-~~~Di~s~G~~l~el~~g  203 (274)
                      .|||+|++|+++..++.+|++|||.+....               +..|+|||.+....|. ...||||.|+++..|++|
T Consensus       442 ahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~  521 (601)
T KOG0590|consen  442 AHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILG  521 (601)
T ss_pred             eeccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecC
Confidence            999999999999999999999999986543               4569999999998886 469999999999999999


Q ss_pred             CCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          204 WENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       204 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +.||...........      .............+.......+.....++.+||+.||.+|.|+++|++
T Consensus       522 ~~~Wk~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~  584 (601)
T KOG0590|consen  522 RFPWKVAKKSDNSFK------TNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILN  584 (601)
T ss_pred             CCccccccccccchh------hhccccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhh
Confidence            999975422211100      000000000000111233345677889999999999999999999986

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.83  E-value=2.8e-20  Score=162.03  Aligned_cols=234  Identities=14%  Similarity=0.030  Sum_probs=171.3

Q ss_pred             hccccccCCCCCCCCcchhHHHH-------HHHHHhcC--CCCCCcHHHHHHHHhcCCC----CccceEeEEE-EeCCcc
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR-------ALMATVNS--PYSPSRPLTLTSIVSRVSW----TTDIEVSSVA-MRGSKP   88 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~-------~~~~~~~~--~~~~~~~~~e~~~l~~l~h----~niv~l~~~~-~~~~~~   88 (274)
                      .|.....+|+|+|  |.||.|..       .++|....  ......+..|+.++..+..    +++.++++.. ..+...
T Consensus        19 ~~~i~~~iG~G~f--G~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~   96 (322)
T KOG1164|consen   19 RYKLGKKIGEGGF--GAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFN   96 (322)
T ss_pred             ceEEeeeccccCC--ceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCcee
Confidence            7888999999999  99999942       12221111  1222267799999999873    6899999888 477788


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-----CcEEEeccc
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-----WTAKISDFG  163 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-----~~~kl~d~g  163 (274)
                      ++||+.+ |.||.++......+.++..+...++.|++.+|.++|+.   |++||||||.|+++...     ..+.+.|||
T Consensus        97 ~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~---G~iHRDiKp~N~~~g~~~~~~~~~~~llDfG  172 (322)
T KOG1164|consen   97 FIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSK---GFIHRDIKPENFVVGQSSRSEVRTLYLLDFG  172 (322)
T ss_pred             EEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhc---CcccCCcCHHHeeecCCCCcccceEEEEecC
Confidence            9999976 67999998775557899999999999999999999999   99999999999999765     468999999


Q ss_pred             cce--ec-------------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH
Q 048314          164 LAK--LL-------------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW  222 (274)
Q Consensus       164 ~~~--~~-------------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~  222 (274)
                      +++  ..                   +|..|.++.+......+.+.|+||++.++.++..|..||...........+...
T Consensus       173 lar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~  252 (322)
T KOG1164|consen  173 LARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKD  252 (322)
T ss_pred             CCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHH
Confidence            997  21                   144577777777778889999999999999999999999654332222111111


Q ss_pred             HHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          223 VYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....        ....  .....+..+.++...+-..+..++|....+.+
T Consensus       253 ~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~  292 (322)
T KOG1164|consen  253 PRKL--------LTDR--FGDLKPEEFAKILEYIDSLDYEDKPDYEKLAE  292 (322)
T ss_pred             hhhh--------cccc--ccCCChHHHHHHHHHhhccCCcCCCCHHHHHH
Confidence            1111        0000  11223445556666666678888888776654

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.82  E-value=7.1e-21  Score=166.55  Aligned_cols=147  Identities=18%  Similarity=0.119  Sum_probs=111.5

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHHHH-------HHHHhcCC-------CCCCcHHHHHHHHhcCCCCccce-EeEE
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCMRA-------LMATVNSP-------YSPSRPLTLTSIVSRVSWTTDIE-VSSV   81 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~~~-------~~~~~~~~-------~~~~~~~~e~~~l~~l~h~niv~-l~~~   81 (274)
                      .....++|.....+|+|+|  |.||++...       ++|.....       ...+.+.+|+++|++++|+|++. ++. 
T Consensus        13 ~~~~~~~Y~~~~~IG~G~f--g~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~-   89 (365)
T PRK09188         13 IPALSARFVETAVLKRDVF--STVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA-   89 (365)
T ss_pred             cccccCCceEccEEeecCc--EEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE-
Confidence            3445677888999999999  999998211       12221111       11334789999999999999985 443 


Q ss_pred             EEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC-CCCceEEcCCCcEEEe
Q 048314           82 AMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDI-KPQNILMDEFWTAKIS  160 (274)
Q Consensus        82 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl-~~~nil~~~~~~~kl~  160 (274)
                         .+..++||||+++++|...  . ...      ...++.+++.+|.|||+.   +|+|||| ||+||+++.++.++|+
T Consensus        90 ---~~~~~LVmE~~~G~~L~~~--~-~~~------~~~~~~~i~~aL~~lH~~---gIiHrDL~KP~NILv~~~~~ikLi  154 (365)
T PRK09188         90 ---TGKDGLVRGWTEGVPLHLA--R-PHG------DPAWFRSAHRALRDLHRA---GITHNDLAKPQNWLMGPDGEAAVI  154 (365)
T ss_pred             ---cCCcEEEEEccCCCCHHHh--C-ccc------hHHHHHHHHHHHHHHHHC---CCeeCCCCCcceEEEcCCCCEEEE
Confidence               2468999999999999632  1 111      146788999999999999   9999999 9999999988999999


Q ss_pred             ccccceecC-------------------CCCcCCCccccc
Q 048314          161 DFGLAKLLS-------------------DKGCMAPECYKR  181 (274)
Q Consensus       161 d~g~~~~~~-------------------~~~~~ape~~~~  181 (274)
                      |||+++...                   ++.|++||.+..
T Consensus       155 DFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~  194 (365)
T PRK09188        155 DFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTP  194 (365)
T ss_pred             ECccceecccCcchhhhhhhhhhhhhhccCccCCcccCCh
Confidence            999987443                   345889998853

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.81  E-value=4.6e-19  Score=151.98  Aligned_cols=241  Identities=19%  Similarity=0.158  Sum_probs=174.3

Q ss_pred             ccccccCCCCCCCCcchhHHHHH---HHHHhcCC-----CCCCcHHHHHHHHhcCCCC-ccceEeEEEEeCCcceEEEEe
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMRA---LMATVNSP-----YSPSRPLTLTSIVSRVSWT-TDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~~---~~~~~~~~-----~~~~~~~~e~~~l~~l~h~-niv~l~~~~~~~~~~~lv~e~   94 (274)
                      |.....+|.|.|  +.||++...   +.+.....     .....+.+|+.+++.+.|+ |++++++.+......++++++
T Consensus         2 ~~~~~~l~~g~~--~~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSF--GEVYLARDRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCC--eEEEEEEeccEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            344567889999  999998333   11111111     1355678999999999988 799999999777778999999


Q ss_pred             CCCCCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEeccccceecC---
Q 048314           95 DLPWDLAYIIFCSAE-RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKISDFGLAKLLS---  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~d~g~~~~~~---  169 (274)
                      +.++++.+++..... ..++......+..|++.++.|+|+.   +++|||+||+|++++... .++++|||.+....   
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~---~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~  156 (384)
T COG0515          80 VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPG  156 (384)
T ss_pred             CCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeecCCCCeEEEeccCcceecCCCC
Confidence            999999977765211 2689999999999999999999999   999999999999999888 79999999875321   


Q ss_pred             --------------CCCcCCCccccc---CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          170 --------------DKGCMAPECYKR---TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       170 --------------~~~~~ape~~~~---~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                                    +..|++||.+..   .......|+||+|++++++++|..|+...................... ..
T Consensus       157 ~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~  235 (384)
T COG0515         157 STSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTP-SL  235 (384)
T ss_pred             ccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCc-cc
Confidence                          456999999887   577889999999999999999999975442210011111111110000 00


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHH
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVV  271 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl  271 (274)
                      ...... ..+......+.+++..|+..+|..|.+..+..
T Consensus       236 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  273 (384)
T COG0515         236 ASPLSP-SNPELISKAASDLLKKLLAKDPKNRLSSSSDL  273 (384)
T ss_pred             ccccCc-cccchhhHHHHHHHHHHHhcCchhcCCHHHHh
Confidence            000000 00022235788999999999999999987754

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.79  E-value=5.7e-19  Score=150.74  Aligned_cols=181  Identities=16%  Similarity=0.138  Sum_probs=133.7

Q ss_pred             CCCccceEeEEEEe---------------------------CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHH
Q 048314           71 SWTTDIEVSSVAMR---------------------------GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALD  123 (274)
Q Consensus        71 ~h~niv~l~~~~~~---------------------------~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~  123 (274)
                      +|||||++.+.|.+                           +..+|+||.-.+ .+|.+++..   ...+.....-++.|
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~-~tLr~yl~~---~~~s~r~~~~~laQ  349 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYR-QTLREYLWT---RHRSYRTGRVILAQ  349 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcch-hhHHHHHhc---CCCchHHHHHHHHH
Confidence            59999999998764                           124699998765 499999975   45677777779999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCCceEEc--CC--CcEEEeccccceecC-----------------CCCcCCCcccccC
Q 048314          124 VAKGILYLHDECEPPILHCDIKPQNILMD--EF--WTAKISDFGLAKLLS-----------------DKGCMAPECYKRT  182 (274)
Q Consensus       124 i~~~l~~lh~~~~~~i~h~dl~~~nil~~--~~--~~~kl~d~g~~~~~~-----------------~~~~~ape~~~~~  182 (274)
                      +++|+.|||.+   ++-|||+|++|||+.  ++  -.+.++|||++---.                 +-.-||||+....
T Consensus       350 lLEav~hL~~h---gvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~  426 (598)
T KOG4158|consen  350 LLEAVTHLHKH---GVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAV  426 (598)
T ss_pred             HHHHHHHHHHc---cchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcC
Confidence            99999999999   999999999999983  33  356789999874322                 2346899987543


Q ss_pred             C------CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHh
Q 048314          183 P------ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWC  256 (274)
Q Consensus       183 ~------~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c  256 (274)
                      +      --.++|.|+.|.+.||++....||...+.-.    +        ....+++---| ..|..+++.+.+++...
T Consensus       427 PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~----L--------~~r~Yqe~qLP-alp~~vpp~~rqlV~~l  493 (598)
T KOG4158|consen  427 PGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEML----L--------DTRTYQESQLP-ALPSRVPPVARQLVFDL  493 (598)
T ss_pred             CCCceeeccchhhhhhhhhhHHHHhccCCcccccchhe----e--------chhhhhhhhCC-CCcccCChHHHHHHHHH
Confidence            2      1368999999999999999999997421100    0        00111110001 36677888899999999


Q ss_pred             hccCCCCCCChhhHH
Q 048314          257 VQDEPALRPSMKCVV  271 (274)
Q Consensus       257 l~~dp~~Rps~~evl  271 (274)
                      |+.||.+|||..-..
T Consensus       494 L~r~pskRvsp~iAA  508 (598)
T KOG4158|consen  494 LKRDPSKRVSPNIAA  508 (598)
T ss_pred             hcCCccccCCccHHH
Confidence            999999999965433

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.78  E-value=1.9e-19  Score=161.36  Aligned_cols=208  Identities=17%  Similarity=0.069  Sum_probs=165.9

Q ss_pred             CCCCCCCCcchhHHHH-------------HH-HHHhcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceEEEEe
Q 048314           30 NDRNSPRSKSVWSCMR-------------AL-MATVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        30 ~g~g~~~~g~vy~~~~-------------~~-~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      +|.|.+  |.|+.+.+             .. ++....+ .......|..++..++ ||.+|++.-.+..+...+++++|
T Consensus         2 lg~g~~--gkvfLvrk~~g~da~~~yamkvl~k~t~~~~-~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~   78 (612)
T KOG0603|consen    2 LGQGSY--GKVFLVRKAGGADAGHLYAMKVLKKATLKVR-DRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDF   78 (612)
T ss_pred             CCcCCC--cchHHHHHhccccccchhhhhcccccccccc-cccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhh
Confidence            577888  88877711             11 1122222 2225668999999998 99999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec------
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL------  168 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~------  168 (274)
                      ..+|.|-..+..  ...+.+.....+...++.+++++|+.   ++++||+|++||+++.+|++++.|||+++..      
T Consensus        79 ~rgg~lft~l~~--~~~f~~~~~~~~~aelaLald~lh~l---~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~  153 (612)
T KOG0603|consen   79 LRGGDLFTRLSK--EVMFDELDVAFYLAELALALDHLHKL---GIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIA  153 (612)
T ss_pred             cccchhhhcccc--CCchHHHHHHHHHHHHHHHHhhcchh---HHHHhcccccceeecccCccccCCchhhhHhHhhhhc
Confidence            999988877764  45678888888899999999999999   9999999999999999999999999998753      


Q ss_pred             -CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc-CCccCHHHH
Q 048314          169 -SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTEVDKKNL  246 (274)
Q Consensus       169 -~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  246 (274)
                       ++..|||||+..  .....+|.||||++.+||++|..||...                    ....+.. .-..|....
T Consensus       154 cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~~--------------------~~~~Il~~~~~~p~~l~  211 (612)
T KOG0603|consen  154 CGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGGD--------------------TMKRILKAELEMPRELS  211 (612)
T ss_pred             ccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCchH--------------------HHHHHhhhccCCchhhh
Confidence             277899999998  5678899999999999999999999741                    1111222 114666777


Q ss_pred             HHHHHHHHHhhccCCCCCCCh
Q 048314          247 ENLVKVGLWCVQDEPALRPSM  267 (274)
Q Consensus       247 ~~~~~li~~cl~~dp~~Rps~  267 (274)
                      ....+++..++..+|.+|--.
T Consensus       212 ~~a~~~~~~l~~r~p~nrLg~  232 (612)
T KOG0603|consen  212 AEARSLFRQLFKRNPENRLGA  232 (612)
T ss_pred             HHHHHHHHHHHhhCHHHHhcc
Confidence            888889999999999888543

>PRK10345 hypothetical protein; Provisional

Probab=99.75  E-value=1.6e-18  Score=141.09  Aligned_cols=131  Identities=14%  Similarity=0.042  Sum_probs=98.4

Q ss_pred             ccccccCCCCCCCCcchhHHHHH---HHHHhcC--CCCCCcHHHHHHHHhcC-----CCCccceEeEEEEeCC---cce-
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMRA---LMATVNS--PYSPSRPLTLTSIVSRV-----SWTTDIEVSSVAMRGS---KPS-   89 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~~---~~~~~~~--~~~~~~~~~e~~~l~~l-----~h~niv~l~~~~~~~~---~~~-   89 (274)
                      .+...+||.|++  |.||.-...   ++|....  ....+.+.+|+.+++.+     .||||++++|++.++.   ..+ 
T Consensus         4 L~~~~~LG~G~~--~~Vy~hp~~~~k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~   81 (210)
T PRK10345          4 LSEQSPLGTGRH--RKCYAHPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYD   81 (210)
T ss_pred             cCCcceecCCCc--eEEEECCCCcCeEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEE
Confidence            345788999999  999964111   1221111  12345678999999999     5799999999998763   433 


Q ss_pred             EEEEe--CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHH-HHHhcCCCCCcccCCCCCCceEEcC----CCcEEEecc
Q 048314           90 TEAAL--DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGI-LYLHDECEPPILHCDIKPQNILMDE----FWTAKISDF  162 (274)
Q Consensus        90 lv~e~--~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l-~~lh~~~~~~i~h~dl~~~nil~~~----~~~~kl~d~  162 (274)
                      +|+||  +.+|+|.+++.+   ..+++.  ..++.+++.++ .|||++   +|+||||||+||+++.    +..++|+|+
T Consensus        82 ~I~e~~G~~~~tL~~~l~~---~~~~e~--~~~~~~~L~~l~~yLh~~---~IvhrDlKp~NILl~~~~~~~~~~~LiDg  153 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQ---CRYEED--VAQLRQLLKKLKRYLLDN---RIVTMELKPQNILCQRISESEVIPVVCDN  153 (210)
T ss_pred             EEecCCCCcchhHHHHHHc---ccccHh--HHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEeccCCCCCcEEEEEC
Confidence            78999  558999999975   236655  35577888777 999999   9999999999999973    347999995


Q ss_pred             cc
Q 048314          163 GL  164 (274)
Q Consensus       163 g~  164 (274)
                      +.
T Consensus       154 ~G  155 (210)
T PRK10345        154 IG  155 (210)
T ss_pred             CC
Confidence            43

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.75  E-value=7.3e-18  Score=135.50  Aligned_cols=168  Identities=10%  Similarity=-0.036  Sum_probs=119.8

Q ss_pred             cccccCCCCCCCCcchhHHH----HHHHHHhcCCCC-CC-----cHHHHHHHHhcCC-CCccceEeEEEEeCCcceEEEE
Q 048314           25 CRSSLNDRNSPRSKSVWSCM----RALMATVNSPYS-PS-----RPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        25 ~~~~~~g~g~~~~g~vy~~~----~~~~~~~~~~~~-~~-----~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .....+++++|  |.||...    +++.+....... .+     .+.+|+++|+++. |+++++++++    +..+++||
T Consensus         5 ~~~~~l~~~~f--~~v~~~~~~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvme   78 (218)
T PRK12274          5 AVNEPLKSDTF--GRILLVRGGERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRS   78 (218)
T ss_pred             ccceeecCCCc--ceEEEeecCCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEe
Confidence            34677999999  9999662    222111111111 11     3678999999996 5889999987    34699999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC-CCCceEEcCCCcEEEeccccceecC---
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDI-KPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl-~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      |+.|.+|.+.+..   .      ...++.|++.+|.++|+.   |++|||| ||.||+++.++.++|+|||++....   
T Consensus        79 yI~G~~L~~~~~~---~------~~~~~~qi~~~L~~lH~~---GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~  146 (218)
T PRK12274         79 YLAGAAMYQRPPR---G------DLAYFRAARRLLQQLHRC---GVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRA  146 (218)
T ss_pred             eecCccHHhhhhh---h------hHHHHHHHHHHHHHHHHC---cCccCCCCCcceEEEcCCCCEEEEECCCceecCCcc
Confidence            9999998755421   1      135778999999999999   9999999 7999999999999999999997543   


Q ss_pred             ---------------------CCCcCCCcccccC-CCc-cccceeehhHhHHHHhhcCCCcccc
Q 048314          170 ---------------------DKGCMAPECYKRT-PIS-VKADVYGYGIVLLETICCWENMEID  210 (274)
Q Consensus       170 ---------------------~~~~~ape~~~~~-~~~-~~~Di~s~G~~l~el~~g~~p~~~~  210 (274)
                                           ++.+++|+-.... ..+ ...+.++.|.-+|.++||+.+...+
T Consensus       147 ~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~  210 (218)
T PRK12274        147 RWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWED  210 (218)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcccc
Confidence                                 2223344322111 122 3455668999999999998887544

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.74  E-value=6.2e-19  Score=144.33  Aligned_cols=163  Identities=10%  Similarity=-0.019  Sum_probs=119.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH----HHHHHhcCC-CCCC----------cHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR----ALMATVNSP-YSPS----------RPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~----~~~~~~~~~-~~~~----------~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      .++|...+++|.|+|  |.||....    .++|..... ...+          .+.+|+..+.++.|++|.....++...
T Consensus        30 ~~~y~~~~~l~~~~f--~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         30 SYNIKTIKVFRNIDD--TKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             hCceEEEEEecCCCc--eEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            467888999999999  99997511    112222211 1111          156899999999999999998876532


Q ss_pred             --------CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcE
Q 048314           86 --------SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA  157 (274)
Q Consensus        86 --------~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~  157 (274)
                              +..+|+|||++|.+|.++..      ++.    ....+++.++..+|+.   +++|+|++|.|++++.++ +
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~----~~~~~i~~~l~~lH~~---gi~H~Dikp~Nili~~~g-i  173 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMPE------ISE----DVKAKIKASIESLHQH---GMVSGDPHKGNFIVSKNG-L  173 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhhh------ccH----HHHHHHHHHHHHHHHc---CCccCCCChHHEEEeCCC-E
Confidence                    35799999999999988742      232    3456999999999999   999999999999999888 9


Q ss_pred             EEeccccceecCCCCcCCCcccccCCCccccceeehhHhHHHH
Q 048314          158 KISDFGLAKLLSDKGCMAPECYKRTPISVKADVYGYGIVLLET  200 (274)
Q Consensus       158 kl~d~g~~~~~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el  200 (274)
                      +++|||........ .....++....+..++|+||||+++.-.
T Consensus       174 ~liDfg~~~~~~e~-~a~d~~vler~y~~~~di~~lg~~~~~~  215 (232)
T PRK10359        174 RIIDLSGKRCTAQR-KAKDRIDLERHYGIKNEIKDLGYYLLIY  215 (232)
T ss_pred             EEEECCCcccccch-hhHHHHHHHhHhcccccccceeEeehHH
Confidence            99999987544211 1111133444567899999999987654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.73  E-value=3.4e-19  Score=167.84  Aligned_cols=227  Identities=15%  Similarity=0.089  Sum_probs=158.0

Q ss_pred             hccccccCCCCCCCCcchhHH-----HHHHHHHhcCC--CCCCcHH---HHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC-----MRALMATVNSP--YSPSRPL---TLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~-----~~~~~~~~~~~--~~~~~~~---~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ++...+.+|.+.|  =+|.++     .+++|..++..  .+.+.|.   .|++ ..-.+|||.+.+--+-..+.-.|||=
T Consensus        24 e~~~~~~LGstRF--lKv~r~k~~eG~vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvR  100 (1431)
T KOG1240|consen   24 ECHYVENLGSTRF--LKVARAKDREGLVVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVR  100 (1431)
T ss_pred             ceeeecccCchhh--hhhhhccCCCceEEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHH
Confidence            5666777888888  677666     21111111111  2334444   4555 45568999998887766666778888


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      +|..+ +|+|.+..  ..-+..-+.+.++-|++.||.-+|..   ||.|+|||.+|||+..=..+.|+||..-+..-   
T Consensus       101 qyvkh-nLyDRlST--RPFL~~iEKkWiaFQLL~al~qcH~~---gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPe  174 (1431)
T KOG1240|consen  101 QYVKH-NLYDRLST--RPFLVLIEKKWIAFQLLKALSQCHKL---GVCHGDIKSENILITSWNWLYLTDFASFKPTYLPE  174 (1431)
T ss_pred             HHHhh-hhhhhhcc--chHHHHHHHHHHHHHHHHHHHHHHHc---CccccccccceEEEeeechhhhhcccccCCccCCC
Confidence            98865 89999975  23367778888999999999999999   99999999999999887788999987654321   


Q ss_pred             ---------------CCCcCCCccccc----------CC-CccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHH
Q 048314          170 ---------------DKGCMAPECYKR----------TP-ISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNW  222 (274)
Q Consensus       170 ---------------~~~~~ape~~~~----------~~-~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~  222 (274)
                                     ...|.|||.+-.          .. .+++.||||+||++.|+++ |++||...          +.
T Consensus       175 DNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS----------QL  244 (1431)
T KOG1240|consen  175 DNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS----------QL  244 (1431)
T ss_pred             CCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH----------HH
Confidence                           124899997643          12 5788999999999999976 68888532          11


Q ss_pred             HHHHHh-hhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          223 VYKCFI-NRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       223 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ....-. .......+..  +   ....+.+++..|++.||++|-|+++.|+.
T Consensus       245 ~aYr~~~~~~~e~~Le~--I---ed~~~Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  245 LAYRSGNADDPEQLLEK--I---EDVSLRNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             HhHhccCccCHHHHHHh--C---cCccHHHHHHHHHccCchhccCHHHHHHh
Confidence            111100 0001111111  1   11368899999999999999999999864

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.72  E-value=5e-18  Score=136.64  Aligned_cols=100  Identities=12%  Similarity=-0.040  Sum_probs=80.2

Q ss_pred             HHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH-hcCCCCCcc
Q 048314           62 TLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYL-HDECEPPIL  140 (274)
Q Consensus        62 ~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~l-h~~~~~~i~  140 (274)
                      +|++.+.++.++++.....+..  ...+|||||++++++......  ...++......++.|++.+|.++ |+.   +++
T Consensus        68 ~E~~~l~~l~~~~v~~p~~~~~--~~~~iVmE~i~g~~l~~~~~~--~~~~~~~~~~~i~~qi~~~L~~l~H~~---gii  140 (190)
T cd05147          68 KEMRNLKRLVTAGIPCPEPILL--KSHVLVMEFIGDDGWAAPRLK--DAPLSESKARELYLQVIQIMRILYQDC---RLV  140 (190)
T ss_pred             HHHHHHHHHHHCCCCCCcEEEe--cCCEEEEEEeCCCCCcchhhh--cCCCCHHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence            4999999998887744332222  223899999998877655432  35789999999999999999999 688   999


Q ss_pred             cCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          141 HCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       141 h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      |||+||+||+++ ++.++|+|||++....
T Consensus       141 HrDlkP~NIli~-~~~v~LiDFG~a~~~~  168 (190)
T cd05147         141 HADLSEYNLLYH-DGKLYIIDVSQSVEHD  168 (190)
T ss_pred             cCCCCHHHEEEE-CCcEEEEEccccccCC
Confidence            999999999998 4689999999986544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=1.8e-17  Score=146.14  Aligned_cols=161  Identities=20%  Similarity=0.187  Sum_probs=122.8

Q ss_pred             cceEEEEeCCCCCHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           87 KPSTEAALDLPWDLAYIIFCS-AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~-~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      .+++.|++|...+|.+||.++ .....++.....++.|++.|+.|   +   +.+|+|+||.||.+..+..+||.|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k---~~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K---GLIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---c---cchhhhccccccccccchhhhhhhhhhe
Confidence            579999999999999999854 33458999999999999999999   6   9999999999999999999999999987


Q ss_pred             eecC-----------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHH
Q 048314          166 KLLS-----------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCF  227 (274)
Q Consensus       166 ~~~~-----------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~  227 (274)
                      ....                 +..||+||.+.+..|+.++||||+|++++|++. -...+...       .    ....+
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~-------~----t~~d~  472 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFERI-------A----TLTDI  472 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHH-------H----hhhhh
Confidence            5432                 567999999999999999999999999999985 22222110       0    00111


Q ss_pred             hhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhH
Q 048314          228 INRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCV  270 (274)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ev  270 (274)
                      .++.+++.      .....+.-.+|+.+++...|.+||++.++
T Consensus       473 r~g~ip~~------~~~d~p~e~~ll~~lls~~p~~RP~~~~~  509 (516)
T KOG1033|consen  473 RDGIIPPE------FLQDYPEEYTLLQQLLSPSPEERPSAIEV  509 (516)
T ss_pred             hcCCCChH------HhhcCcHHHHHHHHhcCCCcccCchHHHH
Confidence            12211110      01112344689999999999999977664

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.67  E-value=5.1e-17  Score=130.94  Aligned_cols=101  Identities=13%  Similarity=-0.055  Sum_probs=81.2

Q ss_pred             HHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCc
Q 048314           61 LTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPI  139 (274)
Q Consensus        61 ~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i  139 (274)
                      ..|...+.++.|+++.....+...  ..+|||||++++++......  ...++......++.|++.++.++|+ .   ++
T Consensus        67 ~~E~~~l~~l~~~~i~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~--~~~~~~~~~~~i~~~l~~~l~~lH~~~---gi  139 (190)
T cd05145          67 EKEFRNLKRLYEAGVPVPEPILLK--KNVLVMEFIGDDGSPAPRLK--DVPLEEEEAEELYEQVVEQMRRLYQEA---GL  139 (190)
T ss_pred             HHHHHHHHHHHhCCCCCceEEEec--CCEEEEEEecCCCchhhhhh--hccCCHHHHHHHHHHHHHHHHHHHHhC---CE
Confidence            468899999999987444433333  24899999998755443222  3467888999999999999999999 8   99


Q ss_pred             ccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          140 LHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       140 ~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +|||+||+||+++ ++.++++|||++....
T Consensus       140 vHrDlkP~NIll~-~~~~~liDFG~a~~~~  168 (190)
T cd05145         140 VHGDLSEYNILYH-DGKPYIIDVSQAVELD  168 (190)
T ss_pred             ecCCCChhhEEEE-CCCEEEEEcccceecC
Confidence            9999999999998 7899999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.67  E-value=2.3e-16  Score=132.10  Aligned_cols=185  Identities=15%  Similarity=0.035  Sum_probs=152.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .-.|.....||.|.|  |..+.|..      +++|.-..+.....+..|.+..+.|. -++|...+-+..++-+-.||+|
T Consensus        27 G~hyrVGkKIGeGsF--G~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVid  104 (449)
T KOG1165|consen   27 GPHYRVGKKIGEGSF--GVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVID  104 (449)
T ss_pred             cccceeccccccCcc--eeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhh
Confidence            446888899999999  99999922      22333333345566789999999887 5999999988888888899999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-----CcEEEeccccceec
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-----WTAKISDFGLAKLL  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-----~~~kl~d~g~~~~~  168 (274)
                      +. |.||+|.+.- -++.++.+++.-++.|++.-+.|+|++   .+|.|||||+|.||...     -.+-++|||+++..
T Consensus       105 LL-GPSLEDLFD~-CgR~FSvKTV~miA~Qmi~rie~vH~k---~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~Y  179 (449)
T KOG1165|consen  105 LL-GPSLEDLFDL-CGRRFSVKTVAMIAKQMITRIEYVHEK---DLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEY  179 (449)
T ss_pred             hh-CcCHHHHHHH-hcCcccHHhHHHHHHHHHHHHHHHHhc---ceeecccCccceeecCCCCCCCceEEEEeccchhhh
Confidence            76 6799999876 567899999999999999999999999   99999999999999743     34789999999753


Q ss_pred             C------------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCC
Q 048314          169 S------------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDAS  212 (274)
Q Consensus       169 ~------------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~  212 (274)
                      .                  |.+||+-..-.+.+.+...|+=|+|-++...+-|..||+....
T Consensus       180 rDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA  241 (449)
T KOG1165|consen  180 RDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKA  241 (449)
T ss_pred             cCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccC
Confidence            3                  4568888777778888999999999888888899999986533

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.66  E-value=1.5e-16  Score=127.90  Aligned_cols=182  Identities=16%  Similarity=0.047  Sum_probs=143.1

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcCCC-CccceEeEEEEeCCcceEEEEe
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRVSW-TTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      +.|.-.+-||.|+|  |..|.|.      .+++|.-.+.-.-.....|.++...|++ ..|..+..+..+...-.|||++
T Consensus        15 gky~lvrkiGsGSF--GdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdL   92 (341)
T KOG1163|consen   15 GKYKLVRKIGSGSF--GDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDL   92 (341)
T ss_pred             cceEEEEeecCCch--hheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeeeec
Confidence            45666788999999  9999992      2223322232334457789999999986 6788888888888899999997


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC---cEEEeccccceecC--
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKISDFGLAKLLS--  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~---~~kl~d~g~~~~~~--  169 (274)
                      . |.||++.+.- -.+.++.++++-++-|++.-+.|+|.+   +.+||||||+|.|..-+.   .+-++|||+++...  
T Consensus        93 L-GPsLEdLfnf-C~R~ftmkTvLMLaDQml~RiEyvH~r---~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~  167 (341)
T KOG1163|consen   93 L-GPSLEDLFNF-CSRRFTMKTVLMLADQMLSRIEYVHLR---NFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDI  167 (341)
T ss_pred             c-CccHHHHHHH-HhhhhhHHhHHHHHHHHHHHHHHHHhh---ccccccCCccceeeccccccceEEEEeccchhhhccc
Confidence            6 6799998864 456799999999999999999999999   999999999999987544   46799999997532  


Q ss_pred             ----------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCcccc
Q 048314          170 ----------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEID  210 (274)
Q Consensus       170 ----------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~  210 (274)
                                      |..|.+-....+...+...|+=|+|-++...--|..||+..
T Consensus       168 ~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQgl  224 (341)
T KOG1163|consen  168 RTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGL  224 (341)
T ss_pred             cccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCccccc
Confidence                            33465555444555678899999998888888899999865

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.65  E-value=1.3e-16  Score=147.96  Aligned_cols=131  Identities=15%  Similarity=0.111  Sum_probs=104.8

Q ss_pred             hhccccccCCCCCCCCcchhHH----HHHHHH-HhcCC---------CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC----MRALMA-TVNSP---------YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~----~~~~~~-~~~~~---------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ..|.....+|+|+|  |.||+|    ...+++ .....         ...+++.+|++++.+++|+|++....++.+...
T Consensus       333 ~~~~~~~~iG~G~~--g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~  410 (535)
T PRK09605        333 RRKIPDHLIGKGAE--ADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEE  410 (535)
T ss_pred             cccCccceeccCCc--EEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCC
Confidence            34455788999999  999995    111111 11110         112456789999999999999988888877778


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++++|.+++.          ....++.+++.+|.+||+.   +++|||+||+||++ .++.++++|||+++.
T Consensus       411 ~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~---giiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        411 KTIVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKA---GIVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             CEEEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhC---CCccCCCChHHEEE-ECCcEEEEeCccccc
Confidence            899999999999999885          3467899999999999999   99999999999999 677899999999865


Q ss_pred             c
Q 048314          168 L  168 (274)
Q Consensus       168 ~  168 (274)
                      .
T Consensus       477 ~  477 (535)
T PRK09605        477 S  477 (535)
T ss_pred             C
Confidence            3

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.63  E-value=5.9e-16  Score=126.60  Aligned_cols=128  Identities=16%  Similarity=0.117  Sum_probs=103.1

Q ss_pred             ccCCCCCCCCcchhHHH----HHHHHHhcCCC----------CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           28 SLNDRNSPRSKSVWSCM----RALMATVNSPY----------SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~----~~~~~~~~~~~----------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ..+|+|.+  |.||+|.    .+++|......          ...++.+|+.++..+.|+|+.....++.+.+..+++||
T Consensus         2 ~~l~~G~~--~~vy~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e   79 (211)
T PRK14879          2 KLIKRGAE--AEIYLGDFLGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVME   79 (211)
T ss_pred             cccccCce--EEEEEEeeCCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEE
Confidence            46899999  9999992    22222222111          01346689999999999998777777777788899999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      |++|++|.+++...     .+ .+..++.+++.+|.++|+.   +++|+|++|.||+++ ++.++++|||.+..
T Consensus        80 ~~~G~~L~~~~~~~-----~~-~~~~i~~~i~~~l~~lH~~---~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         80 YIEGEPLKDLINSN-----GM-EELELSREIGRLVGKLHSA---GIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             EeCCcCHHHHHHhc-----cH-HHHHHHHHHHHHHHHHHhC---CcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            99999999999752     22 7888999999999999999   999999999999998 78899999998755

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.61  E-value=5.5e-16  Score=125.65  Aligned_cols=124  Identities=16%  Similarity=0.140  Sum_probs=96.1

Q ss_pred             cCCCCCCCCcchhHHH----HHHHHHhcCC-CC---------CCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           29 LNDRNSPRSKSVWSCM----RALMATVNSP-YS---------PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~----~~~~~~~~~~-~~---------~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      ++|+|++  |.||+|.    .+++|..... ..         .+++.+|++++..++|+++.....++...+..+++|||
T Consensus         1 ~ig~G~~--~~vy~~~~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   78 (199)
T TIGR03724         1 LIAKGAE--AIIYLGDFLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEY   78 (199)
T ss_pred             CCCCCce--EEEEEeecCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE
Confidence            5899999  9999994    2222221111 00         13355899999999988765555555566778999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      ++|++|.+++....   .      .++.+++.+|.++|+.   +++|+|++|.|++++ ++.++++|||.+..
T Consensus        79 ~~g~~l~~~~~~~~---~------~~~~~i~~~l~~lH~~---gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        79 IEGKPLKDVIEEGN---D------ELLREIGRLVGKLHKA---GIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             ECCccHHHHHhhcH---H------HHHHHHHHHHHHHHHC---CeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            99999999886411   1      7899999999999999   999999999999998 78999999998755

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.60  E-value=9.4e-16  Score=129.33  Aligned_cols=154  Identities=18%  Similarity=0.189  Sum_probs=103.6

Q ss_pred             ceEEEEeCCCCCHHHHHHh---CCCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           88 PSTEAALDLPWDLAYIIFC---SAER--NPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~---~~~~--~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                      .+++|+-+ .++|.+++..   ....  .+....+..+..|++..+++||+.   |++|+||+|+|++++.+|.+.|+||
T Consensus       114 ~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~---GlVHgdi~~~nfll~~~G~v~Lg~F  189 (288)
T PF14531_consen  114 RFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY---GLVHGDIKPENFLLDQDGGVFLGDF  189 (288)
T ss_dssp             EEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEE-TTS-EEE--G
T ss_pred             hhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc---ceEecccceeeEEEcCCCCEEEcCh
Confidence            36788876 4688888652   1111  244555677789999999999999   9999999999999999999999999


Q ss_pred             ccceecC--------CCCcCCCccccc--------CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH
Q 048314          163 GLAKLLS--------DKGCMAPECYKR--------TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC  226 (274)
Q Consensus       163 g~~~~~~--------~~~~~ape~~~~--------~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~  226 (274)
                      +.....+        +..|.+||....        ..++.+.|.|++|+++|.|.+|..||..........         
T Consensus       190 ~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~~---------  260 (288)
T PF14531_consen  190 SSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEADPE---------  260 (288)
T ss_dssp             GGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTSG---------
T ss_pred             HHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCcccccc---------
Confidence            8765444        345888886643        246889999999999999999999997441111000         


Q ss_pred             HhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCC
Q 048314          227 FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALR  264 (274)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R  264 (274)
                             ..+..  -. +.++.+..||..+|+.||.+|
T Consensus       261 -------~~f~~--C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  261 -------WDFSR--CR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             -------GGGTT--SS----HHHHHHHHHHT-SSGGGS
T ss_pred             -------ccchh--cC-CcCHHHHHHHHHHccCCcccC
Confidence                   01111  22 667889999999999999988

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=1.9e-15  Score=126.59  Aligned_cols=191  Identities=16%  Similarity=0.187  Sum_probs=134.9

Q ss_pred             HHHHhcCCCCccceEeEEEEe-----CCcceEEEEeCCCCCHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 048314           64 TSIVSRVSWTTDIEVSSVAMR-----GSKPSTEAALDLPWDLAYIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECE  136 (274)
Q Consensus        64 ~~~l~~l~h~niv~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~  136 (274)
                      ..-|-++-|.|||+++.|+.+     .....++.|||..|++.+||++.+  ...+......+|+.||..||.|||+. .
T Consensus       118 FdnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~-~  196 (458)
T KOG1266|consen  118 FDNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSC-D  196 (458)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhcc-C
Confidence            344556679999999999865     345789999999999999998642  23488888899999999999999995 8


Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecccccee---------------cCCCCcCCCcccccCCCccccceeehhHhHHHHh
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKL---------------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETI  201 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~---------------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~  201 (274)
                      ++++|+++..+.|.+..++-+|+..-.....               .+.++|.+||.-.....+..+|||+||...++|.
T Consensus       197 PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlema  276 (458)
T KOG1266|consen  197 PPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMA  276 (458)
T ss_pred             CccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHH
Confidence            8999999999999999888887753222111               1145788888666556678899999999999987


Q ss_pred             hcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          202 CCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       202 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+.--.....+..  .          ....+.+.+-.     .....-.+++..|++-.|..||+|.+++-
T Consensus       277 ilEiq~tnseS~~--~----------~ee~ia~~i~~-----len~lqr~~i~kcl~~eP~~rp~ar~llf  330 (458)
T KOG1266|consen  277 ILEIQSTNSESKV--E----------VEENIANVIIG-----LENGLQRGSITKCLEGEPNGRPDARLLLF  330 (458)
T ss_pred             HheeccCCCccee--e----------hhhhhhhheee-----ccCccccCcCcccccCCCCCCcchhhhhc
Confidence            6643321110100  0          00011111100     00011246778899999999999998763

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=2.2e-16  Score=150.63  Aligned_cols=186  Identities=17%  Similarity=0.131  Sum_probs=140.8

Q ss_pred             hhhhHHHHhhhccccccCCCCCCCCcchhHHHHHHHH----HhcCCCCCCcHHHHHHHHhcCC---CCccceEeEEEEeC
Q 048314           13 ARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMRALMA----TVNSPYSPSRPLTLTSIVSRVS---WTTDIEVSSVAMRG   85 (274)
Q Consensus        13 ~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~~~~~----~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~   85 (274)
                      +.+++..-...|.....+|.|++  |.||+|.---.+    ++.++...=+|--=.+++.+|+   -+-|..+.....-.
T Consensus       689 ~~~~~~~~~~~~~I~~e~G~g~y--~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~  766 (974)
T KOG1166|consen  689 PNTEFEVGGEKFCISKEIGEGSY--GSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQ  766 (974)
T ss_pred             ccceeeecceeEEEEeeeccccc--eEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccC
Confidence            34455555667888999999999  999999221111    1111112222333344566665   23344444444556


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-------CCCcEE
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-------EFWTAK  158 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-------~~~~~k  158 (274)
                      +.-+||+||.+.|+|.+++.  ..+.++|...+.++.|++.-+..||..   +|||+||||+|+++.       ....++
T Consensus       767 ~~S~lv~ey~~~Gtlld~~N--~~~~m~e~lv~~~~~qml~ive~lH~~---~IIHgDiKPDNfll~~~~~~~~~~~~l~  841 (974)
T KOG1166|consen  767 NASVLVSEYSPYGTLLDLIN--TNKVMDEYLVMFFSCQMLRIVEHLHAM---GIIHGDIKPDNFLLRREICADSDSKGLY  841 (974)
T ss_pred             CcceeeeeccccccHHHhhc--cCCCCCchhhhHHHHHHHHHHHHHHhc---ceecccCCcceeEeecccCCCCcccceE
Confidence            66789999999999999997  467799999999999999999999999   999999999999984       345689


Q ss_pred             EeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCC
Q 048314          159 ISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWE  205 (274)
Q Consensus       159 l~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~  205 (274)
                      |+|||.+--+.             +..+-++|+..+.+|++..|.|.++.+++-|+.|+-
T Consensus       842 lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  842 LIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             EEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence            99999985332             456789999999999999999999999999998853

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.54  E-value=3.6e-15  Score=140.72  Aligned_cols=201  Identities=19%  Similarity=0.182  Sum_probs=135.3

Q ss_pred             hHHHHhhhccccccCCCCCCCCcchhHHHHHHHHHhcCCCCCCcHHHHHHHHhcCCCCccc-eEeEEEEeCCcceEEEEe
Q 048314           16 SLCTKLRNFCRSSLNDRNSPRSKSVWSCMRALMATVNSPYSPSRPLTLTSIVSRVSWTTDI-EVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        16 ~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv-~l~~~~~~~~~~~lv~e~   94 (274)
                      .....-.+|...+++..|.+  |.||.+..        +..+.+|..      +++-.|+| |=+.  ..-+.++.|   
T Consensus        77 ~~~p~e~df~~IklisngAy--gavylvrh--------~~trqrfa~------kiNkq~lilRnil--t~a~npfvv---  135 (1205)
T KOG0606|consen   77 RRAPSESDFNTIKLISNGAY--GAVYLVRH--------KETRQRFAM------KINKQNLILRNIL--TFAGNPFVV---  135 (1205)
T ss_pred             ccCCCccccceeEeeccCCC--Cceeeeec--------cccccchhh------cccccchhhhccc--cccCCccee---
Confidence            34445679999999999999  99998721        111122211      11211211 1011  111233444   


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                         |+-...+..  -+.++..        ++.++.|||+.   +|+|||+||+|.++..-|++|+.|||+++...     
T Consensus       136 ---gDc~tllk~--~g~lPvd--------mvla~Eylh~y---givhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~at  199 (1205)
T KOG0606|consen  136 ---GDCATLLKN--IGPLPVD--------MVLAVEYLHSY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLAT  199 (1205)
T ss_pred             ---chhhhhccc--CCCCcch--------hhHHhHhhccC---CeecCCCCCCcceeeecccccccchhhhhhhhhhccc
Confidence               455555654  2334422        27789999999   99999999999999999999999999986432     


Q ss_pred             ---------------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh
Q 048314          170 ---------------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI  228 (274)
Q Consensus       170 ---------------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~  228 (274)
                                           ++.|.|||++....|+..+|.|++|+++||.+.|.-||..+ .+  +..+..       
T Consensus       200 nl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGd-tp--eelfg~-------  269 (1205)
T KOG0606|consen  200 NLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD-TP--EELFGQ-------  269 (1205)
T ss_pred             hhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCC-CH--HHHHhh-------
Confidence                                 67899999999999999999999999999999999999754 11  111111       


Q ss_pred             hhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCC
Q 048314          229 NRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRP  265 (274)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp  265 (274)
                        -+.+.+.-.+-+.....+..+++.+.|+.+|..|-
T Consensus       270 --visd~i~wpE~dea~p~Ea~dli~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  270 --VISDDIEWPEEDEALPPEAQDLIEQLLRQNPLCRL  304 (1205)
T ss_pred             --hhhhhccccccCcCCCHHHHHHHHHHHHhChHhhc
Confidence              11111111122445567889999999999999984

>smart00090 RIO RIO-like kinase

Probab=99.53  E-value=5.6e-15  Score=122.94  Aligned_cols=141  Identities=11%  Similarity=-0.035  Sum_probs=103.2

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHH-H------HHHHHhcCCCC-----------C---------------CcHHHH
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCM-R------ALMATVNSPYS-----------P---------------SRPLTL   63 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~-~------~~~~~~~~~~~-----------~---------------~~~~~e   63 (274)
                      +......|...+.+|.|++  |.||++. .      .++|.......           .               ..+..|
T Consensus        23 ~~~~~~~~~i~~~Lg~G~~--g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  100 (237)
T smart00090       23 LLNRGILSAIGGCISTGKE--ANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKE  100 (237)
T ss_pred             HHhcCchHHhCCeeccCcc--eeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHH
Confidence            4444556778899999999  9999985 1      11222221100           0               113479


Q ss_pred             HHHHhcCCCCc--cceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC-cc
Q 048314           64 TSIVSRVSWTT--DIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP-IL  140 (274)
Q Consensus        64 ~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~-i~  140 (274)
                      +.++.++.+.+  +.+.+++    ...++||||+++++|...+..  ...+.......++.|++.++.+||+.   + ++
T Consensus       101 ~~~L~~L~~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---g~ii  171 (237)
T smart00090      101 FRNLQRLYEAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLK--DVEPEEEEEFELYDDILEEMRKLYKE---GELV  171 (237)
T ss_pred             HHHHHHHHhcCCCCCeeeEe----cCceEEEEEecCCcccccccc--cCCcchHHHHHHHHHHHHHHHHHHhc---CCEE
Confidence            99999997633  4455543    235899999999888776532  33466667788999999999999999   9 99


Q ss_pred             cCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          141 HCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       141 h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      |+|+||+||+++ ++.++++|||.+....
T Consensus       172 H~Dikp~NIli~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      172 HGDLSEYNILVH-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             eCCCChhhEEEE-CCCEEEEEChhhhccC
Confidence            999999999998 7889999999876544

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.48  E-value=2.1e-13  Score=113.66  Aligned_cols=103  Identities=15%  Similarity=0.077  Sum_probs=83.4

Q ss_pred             CCCcHHHHHHHHhcCCCCcc--ceEeEEEEeCC----cceEEEEeCCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Q 048314           56 SPSRPLTLTSIVSRVSWTTD--IEVSSVAMRGS----KPSTEAALDLP-WDLAYIIFCSAERNPYWNQRVRIALDVAKGI  128 (274)
Q Consensus        56 ~~~~~~~e~~~l~~l~h~ni--v~l~~~~~~~~----~~~lv~e~~~~-gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l  128 (274)
                      ...++.+|+.++.+++|++|  ++.+++.....    ..++|||++++ .+|.+++..   ..++..    .+.+++.++
T Consensus        83 ~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~---~~l~~~----~~~~i~~~l  155 (239)
T PRK01723         83 ERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQE---APLSEE----QWQAIGQLI  155 (239)
T ss_pred             hhhHHHHHHHHHHHHHhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHhc---CCCCHH----HHHHHHHHH
Confidence            34567889999999998885  77887754322    23599999997 699999864   345544    356899999


Q ss_pred             HHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314          129 LYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus       129 ~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      .+||+.   ||+|+|+||.|||++.++.++++|||.+...
T Consensus       156 ~~lH~~---GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~  192 (239)
T PRK01723        156 ARFHDA---GVYHADLNAHNILLDPDGKFWLIDFDRGELR  192 (239)
T ss_pred             HHHHHC---CCCCCCCCchhEEEcCCCCEEEEECCCcccC
Confidence            999999   9999999999999998889999999987653

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.46  E-value=4.6e-14  Score=114.45  Aligned_cols=138  Identities=10%  Similarity=-0.030  Sum_probs=100.2

Q ss_pred             hhhHHHHhhhccccccCCCCCCCCcchhHHHH-----HHHHHhcCC------------------------CCCCcHHHHH
Q 048314           14 RSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSP------------------------YSPSRPLTLT   64 (274)
Q Consensus        14 ~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~------------------------~~~~~~~~e~   64 (274)
                      ..++......+...+.+|.|++  |.||++..     .++|.....                        ........|+
T Consensus         7 ~~~~~~~~~~~~~~~~i~~G~~--g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~   84 (198)
T cd05144           7 LHTLVKRGVVESLGNQIGVGKE--SDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEF   84 (198)
T ss_pred             HHHHHHcCchhhcCCccccCcc--eEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHH
Confidence            3455555555777889999999  99998822     111111100                        0011245788


Q ss_pred             HHHhcCCCCc--cceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccC
Q 048314           65 SIVSRVSWTT--DIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHC  142 (274)
Q Consensus        65 ~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~  142 (274)
                      .++.++.|++  +++.++.    ...++||||+++++|......        .....++.+++.++.++|+.   +++|+
T Consensus        85 ~~l~~l~~~~i~v~~~~~~----~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~~---gi~H~  149 (198)
T cd05144          85 AALKALYEEGFPVPKPIDW----NRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYKH---GIIHG  149 (198)
T ss_pred             HHHHHHHHcCCCCCceeec----CCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHHC---CCCcC
Confidence            8999988874  4555542    456999999999998765431        23457889999999999999   99999


Q ss_pred             CCCCCceEEcCCCcEEEeccccceec
Q 048314          143 DIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus       143 dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      |++|.||+++.++.++++|||.+...
T Consensus       150 Dl~p~Nill~~~~~~~liDfg~~~~~  175 (198)
T cd05144         150 DLSEFNILVDDDEKIYIIDWPQMVST  175 (198)
T ss_pred             CCCcccEEEcCCCcEEEEECCccccC
Confidence            99999999999999999999987543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.44  E-value=1.1e-13  Score=106.25  Aligned_cols=130  Identities=16%  Similarity=0.027  Sum_probs=102.5

Q ss_pred             cccCCCCCCCCcchhHHHH----HHHHHhcCCCCCCcHHHHHHHHhcCCC--CccceEeEEEEeCCcceEEEEeCCCCCH
Q 048314           27 SSLNDRNSPRSKSVWSCMR----ALMATVNSPYSPSRPLTLTSIVSRVSW--TTDIEVSSVAMRGSKPSTEAALDLPWDL  100 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~----~~~~~~~~~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv~e~~~~gsL  100 (274)
                      .+.+|.|.+  +.||++..    .++|..........+..|+.++..++|  .++++++++....+..++++||++++++
T Consensus         3 ~~~i~~g~~--~~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~   80 (155)
T cd05120           3 IKLLKGGLT--NRVYLLGTKDEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETL   80 (155)
T ss_pred             ceecccccc--cceEEEEecCCeEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeec
Confidence            356889999  99998832    112222221113468899999999987  5899999998888889999999988766


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          101 AYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       101 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      ..+         +......++.+++.++..+|.....+++|+|++|.|++++..+.+++.|||.+..
T Consensus        81 ~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          81 DEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             ccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            543         5566778899999999999986334799999999999999988999999998753

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=3.1e-14  Score=132.58  Aligned_cols=232  Identities=20%  Similarity=0.171  Sum_probs=165.8

Q ss_pred             hccccccCCCCCCCCcchhHH-------HHHHHHHhcCC-CCC---CcHHHHHHHHhcCC-CCccceEeEEEEeCCcceE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC-------MRALMATVNSP-YSP---SRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~~~~-~~~---~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~l   90 (274)
                      .|....-+|.|.+  +.|-..       ...+.+.+... ...   +....|..+-..+. |+|++++++...+....++
T Consensus        21 ~~~~~~~ig~gs~--~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~   98 (601)
T KOG0590|consen   21 QYKLSRSIGKGSF--SSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLL   98 (601)
T ss_pred             ccccccccccccc--chhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCccccc
Confidence            4444556888888  555544       11112222211 112   22234777777777 9999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHh-cCCCCCcccCCCCCCceEEcCCC-cEEEecccccee
Q 048314           91 EAALDLPWDLAYIIFCSAER-NPYWNQRVRIALDVAKGILYLH-DECEPPILHCDIKPQNILMDEFW-TAKISDFGLAKL  167 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~-~l~~~~~~~~~~~i~~~l~~lh-~~~~~~i~h~dl~~~nil~~~~~-~~kl~d~g~~~~  167 (274)
                      .++|..++++.+.+.. ... ..+....-.++.|+..++.|+| ..   ++.|+|++|+|.+++..+ ..+++|||++..
T Consensus        99 ~~~~s~g~~~f~~i~~-~~~~~~~~~~~~~~~~ql~s~l~~~H~~~---~~~h~~ikP~n~~l~~s~~~l~~~df~~At~  174 (601)
T KOG0590|consen   99 SLSYSDGGSLFSKISH-PDSTGTSSSSASRYLPQLNSGLSYLHPEN---GVTHRDIKPSNSLLDESGSALKIADFGLATA  174 (601)
T ss_pred             ccCccccccccccccc-CCccCCCCcchhhhhhhhccCccccCccc---ccccCCCCCccchhccCCCcccCCCchhhcc
Confidence            9999999999888842 233 5677788889999999999999 77   999999999999999998 999999999864


Q ss_pred             cC---------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhh
Q 048314          168 LS---------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRE  231 (274)
Q Consensus       168 ~~---------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  231 (274)
                      ..               ++.|.|||...+. -..+..|+||.|+++..+++|..|+.........  ...|...    ..
T Consensus       175 ~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~--~~~~~~~----~~  248 (601)
T KOG0590|consen  175 YRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGR--YSSWKSN----KG  248 (601)
T ss_pred             ccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccccccccc--ceeeccc----cc
Confidence            32               5679999988774 3468899999999999999999999754222211  1111100    00


Q ss_pred             hhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhH
Q 048314          232 LNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCV  270 (274)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ev  270 (274)
                      .    ..............+++..++..+|..|.+.+++
T Consensus       249 ~----~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~  283 (601)
T KOG0590|consen  249 R----FTQLPWNSISDQAHDLLHKILKENPSNRLSIEEL  283 (601)
T ss_pred             c----cccCccccCChhhhhcccccccCCchhccccccc
Confidence            0    0011233445567788888999999999998876

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=6.8e-13  Score=119.27  Aligned_cols=229  Identities=21%  Similarity=0.177  Sum_probs=165.5

Q ss_pred             hhccccccCCC--CCCCCcchhHH---------HHHHHH---HhcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCC
Q 048314           22 RNFCRSSLNDR--NSPRSKSVWSC---------MRALMA---TVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGS   86 (274)
Q Consensus        22 ~~f~~~~~~g~--g~~~~g~vy~~---------~~~~~~---~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~   86 (274)
                      ..|....-+|.  |.+  |.||++         ..+.++   -........+=.+|+...+.++ |+|.++.+..+.+.+
T Consensus       114 ~~~~~~~~~g~~~g~~--~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~  191 (524)
T KOG0601|consen  114 QRFPISSRTGSLPGSK--GSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSG  191 (524)
T ss_pred             hhcccccccccCCCCC--ceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCC
Confidence            45566777888  999  999988         112222   1111233444567888888887 999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHH----HHHHHhcCCCCCcccCCCCCCceEEcCC-CcEEEec
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAK----GILYLHDECEPPILHCDIKPQNILMDEF-WTAKISD  161 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~----~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~d  161 (274)
                      ..++-+|+|. .+|.++... ...-++....+....+...    ||.++|+.   .++|-|+||.||.+..+ ..++++|
T Consensus       192 ~lfiqtE~~~-~sl~~~~~~-~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~---~~~~~~~kp~~i~~~~~~~s~~~~d  266 (524)
T KOG0601|consen  192 ILFIQTELCG-ESLQSYCHT-PCNFLPDNLLWNSLRDWLSRDVTALSHLHSN---NIVHDDLKPANIFTTSDWTSCKLTD  266 (524)
T ss_pred             cceeeecccc-chhHHhhhc-ccccCCchhhhhHHhhhhhcccccccccCCC---cccccccchhheecccccceeecCC
Confidence            9999999886 788888876 3344777777887778777    99999999   99999999999999998 7889999


Q ss_pred             cccceecC----------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH
Q 048314          162 FGLAKLLS----------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK  225 (274)
Q Consensus       162 ~g~~~~~~----------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~  225 (274)
                      ||+...++                ...|++||..++ .++...|+|++|.+..+.+++..++......       .|.  
T Consensus       267 f~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~-l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~-------~W~--  336 (524)
T KOG0601|consen  267 FGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNG-LATFASDIFSLGEVILEAILGSHLPSVGKNS-------SWS--  336 (524)
T ss_pred             cceeEEccCCccccceeeeecCCCCceEeChhhhcc-ccchHhhhcchhhhhHhhHhhcccccCCCCC-------Ccc--
Confidence            99876554                235899996654 5688999999999999999887776433111       110  


Q ss_pred             HHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          226 CFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                           ..++...+.++-.....++...+.+|+..+|-.|++...+..
T Consensus       337 -----~~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~  378 (524)
T KOG0601|consen  337 -----QLRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTA  378 (524)
T ss_pred             -----ccccccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhc
Confidence                 011111111122222344555888999999999999887754

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.27  E-value=4e-12  Score=101.86  Aligned_cols=96  Identities=11%  Similarity=-0.053  Sum_probs=68.7

Q ss_pred             HHHHHHhcCCCCc--cceEeEEEEeCCcceEEEEeCCCCCHHHH-HHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCC
Q 048314           62 TLTSIVSRVSWTT--DIEVSSVAMRGSKPSTEAALDLPWDLAYI-IFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEP  137 (274)
Q Consensus        62 ~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~~~gsL~~~-l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~  137 (274)
                      .|...+.++.+..  +.+.++.    ...++||||++++++... +..   .... .....++.+++.++.++|. .   
T Consensus        66 ~e~~~l~~l~~~~~~~~~~~~~----~~~~lv~e~~~g~~~~~~~l~~---~~~~-~~~~~~~~~~~~~l~~lh~~~---  134 (187)
T cd05119          66 KEFRNLKRLYEAGVPVPKPIDL----NRHVLVMEFIGGDGIPAPRLKD---VRLL-EDPEELYDQILELMRKLYREA---  134 (187)
T ss_pred             HHHHHHHHHHHcCCCCCceEec----CCCEEEEEEeCCCCccChhhhh---hhhc-ccHHHHHHHHHHHHHHHhhcc---
Confidence            4555555554432  4444443    246999999998543221 111   0011 5678899999999999999 8   


Q ss_pred             CcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +++|+|++|+||+++ ++.++++|||.+....
T Consensus       135 ~ivH~Dl~p~Nili~-~~~~~liDfg~a~~~~  165 (187)
T cd05119         135 GLVHGDLSEYNILVD-DGKVYIIDVPQAVEID  165 (187)
T ss_pred             CcCcCCCChhhEEEE-CCcEEEEECccccccc
Confidence            999999999999999 8899999999986543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=1.1e-11  Score=111.64  Aligned_cols=230  Identities=17%  Similarity=0.106  Sum_probs=163.3

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHH--------HHHHHHhc---CCCCCCcHHHHHHHHhcCC-CCccceEeEEEEe
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCM--------RALMATVN---SPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMR   84 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~--------~~~~~~~~---~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~   84 (274)
                      ....+.+|+....+|.|.|  +.|+++.        .+++...+   ...+...-+.|+.+...+. |.++++....|..
T Consensus       260 ~s~~~~df~~v~~i~~~~~--~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~  337 (524)
T KOG0601|consen  260 TSCKLTDFGLVSKISDGNF--SSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQ  337 (524)
T ss_pred             ceeecCCcceeEEccCCcc--ccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccc
Confidence            4556778999999999999  8888852        12222111   1112222246666666665 8999998888887


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcEEEeccc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKISDFG  163 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~d~g  163 (274)
                      ..+.++-.|||.++++.....  ....+....++++..|++.++.++|+.   .++|.|++|+||++..+ +..++.|||
T Consensus       338 ~r~~~ip~e~~~~~s~~l~~~--~~~~~d~~~~~~~~~q~~~~l~~i~s~---~~~~~d~~psni~i~~~~~~~~~~~~~  412 (524)
T KOG0601|consen  338 LRQGYIPLEFCEGGSSSLRSV--TSQMLDEDPRLRLTAQILTALNVIHSK---LFVHLDVKPSNILISNDGFFSKLGDFG  412 (524)
T ss_pred             cccccCchhhhcCcchhhhhH--HHHhcCcchhhhhHHHHHhccccccch---hhhcccccccceeeccchhhhhccccc
Confidence            777889999999998887774  245678888999999999999999998   99999999999999886 888999999


Q ss_pred             cceecC--------CCCcC--CCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          164 LAKLLS--------DKGCM--APECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       164 ~~~~~~--------~~~~~--ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ++....        ..++.  ++.......+..+.|++|||..+.+.++|...-... .        .          ..
T Consensus       413 ~~t~~~~~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~-~--------~----------~~  473 (524)
T KOG0601|consen  413 CWTRLAFSSGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESG-V--------Q----------SL  473 (524)
T ss_pred             cccccceecccccccccccccchhhccccccccccccccccccccccccCcccCccc-c--------c----------ce
Confidence            886322        22333  454555667889999999999999988875543221 0        0          00


Q ss_pred             hhhcCC-ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 KLVRGT-EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 ~~~~~~-~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+..+. +........+..+...+...++..||++.++..
T Consensus       474 ~i~~~~~p~~~~~~~~~q~~~kv~~~~~~~~~~l~~~l~~  513 (524)
T KOG0601|consen  474 TIRSGDTPNLPGLKLQLQVLLKVMINPDRKRRPSAVELSL  513 (524)
T ss_pred             eeecccccCCCchHHhhhhhhhhhcCCccccchhhhhhcc
Confidence            001110 112222366777888899999999999887643

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.11  E-value=2.6e-10  Score=104.07  Aligned_cols=133  Identities=11%  Similarity=0.104  Sum_probs=105.3

Q ss_pred             HHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 048314           60 PLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPI  139 (274)
Q Consensus        60 ~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i  139 (274)
                      ..+-++.|+.++||||++++..+...+..|||+|-+.  -|..++.+     +....+.--+.||+.||.+||+.|  ++
T Consensus        56 ~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~-----l~~~~v~~Gl~qIl~AL~FL~~d~--~l  126 (690)
T KOG1243|consen   56 AKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKE-----LGKEEVCLGLFQILAALSFLNDDC--NL  126 (690)
T ss_pred             HHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHH-----hHHHHHHHHHHHHHHHHHHHhccC--Ce
Confidence            4567888999999999999999999999999999885  47888876     334444555789999999998664  99


Q ss_pred             ccCCCCCCceEEcCCCcEEEeccccceecCCC-----------CcCCCcccccCCCccccceeehhHhHHHHhhc
Q 048314          140 LHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-----------GCMAPECYKRTPISVKADVYGYGIVLLETICC  203 (274)
Q Consensus       140 ~h~dl~~~nil~~~~~~~kl~d~g~~~~~~~~-----------~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g  203 (274)
                      +|++|.-+.+++...|.-||++|.+.......           .|..|+.+....  -..|.|-||++++|++.|
T Consensus       127 vHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s~--~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  127 VHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPSE--WSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             eeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCccc--cchhhhhHHHHHHHHhCc
Confidence            99999999999999999999998876543311           134444332211  346999999999999998

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.01  E-value=1.9e-10  Score=109.36  Aligned_cols=194  Identities=16%  Similarity=0.105  Sum_probs=139.6

Q ss_pred             CcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC
Q 048314           58 SRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEP  137 (274)
Q Consensus        58 ~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~  137 (274)
                      +..+.+-.++-..++|-+++..--+.......|+++|..+++|..-|+.  -+..+..-.......+.+++.+||+.   
T Consensus       849 ~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~L~~~~~~~~~~~Skl~~--~~~~saepaRs~i~~~vqs~e~L~s~---  923 (1205)
T KOG0606|consen  849 ESIRSKSNILITPRSPAVVRSFPSFPCRSPLPLVGHYLNGGDLPSKLHN--SGCLSAEPARSPILERVQSLESLHSS---  923 (1205)
T ss_pred             cccCCccCccccCCCCceecccCCCCCCCCcchhhHHhccCCchhhhhc--CCCcccccccchhHHHHhhhhccccc---
Confidence            3334444444334456555544444456678999999999999999986  33456556666777888999999998   


Q ss_pred             CcccCCCCCCceEEcCCCcEEEeccccceecC------------------------------------------CCCcCC
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKLLS------------------------------------------DKGCMA  175 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------------------------------------------~~~~~a  175 (274)
                      .+.|+|++|.|.++..+++.++++|+.....+                                          ++.|.+
T Consensus       924 ~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~la 1003 (1205)
T KOG0606|consen  924 LRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLA 1003 (1205)
T ss_pred             hhhcccccccchhhcccCCcccCccccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccC
Confidence            79999999999999999999999987322111                                          456999


Q ss_pred             CcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHH
Q 048314          176 PECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLW  255 (274)
Q Consensus       176 pe~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  255 (274)
                      ||...+......+|.|++|+.++|.++|..||.....   ...+     .    ......+....-+...+....+++..
T Consensus      1004 Pe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tp---q~~f-----~----ni~~~~~~~p~g~~~~s~~aq~~~~~ 1071 (1205)
T KOG0606|consen 1004 PEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETP---QQIF-----E----NILNRDIPWPEGPEEGSYEAQDLINR 1071 (1205)
T ss_pred             CcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcch---hhhh-----h----ccccCCCCCCCCccccChhhhhhhhh
Confidence            9999999999999999999999999999999974411   1100     0    00111111113455667788899999


Q ss_pred             hhccCCCCCCChh
Q 048314          256 CVQDEPALRPSMK  268 (274)
Q Consensus       256 cl~~dp~~Rps~~  268 (274)
                      .+..+|.+|..+.
T Consensus      1072 ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1072 LLTEEPTQRLGAK 1084 (1205)
T ss_pred             hhccCchhccCcc
Confidence            9999999998765

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.95  E-value=6.4e-10  Score=87.48  Aligned_cols=123  Identities=11%  Similarity=-0.088  Sum_probs=82.3

Q ss_pred             cCCCCCCCCcchhHHH----HHHHHHhcCC-CCCCcHHHHHHHHhcCCCCcc-ceEeEEEEeCCcceEEEEeCCCCCHHH
Q 048314           29 LNDRNSPRSKSVWSCM----RALMATVNSP-YSPSRPLTLTSIVSRVSWTTD-IEVSSVAMRGSKPSTEAALDLPWDLAY  102 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~----~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~gsL~~  102 (274)
                      -++.|..  +.+|++.    ..++|..... .....+..|+.++..+.+.++ .+++.+.  ....++||||+++.++.+
T Consensus         5 ~l~~G~~--~~vy~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l~~   80 (170)
T cd05151           5 PLKGGMT--NKNYRVEVANKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSELLT   80 (170)
T ss_pred             ecCCccc--CceEEEEECCeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCcccc
Confidence            3566766  7788651    1112222221 123456789999999876554 4555543  334589999999987754


Q ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC--CCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314          103 IIFCSAERNPYWNQRVRIALDVAKGILYLHDEC--EPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus       103 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~--~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..       .   .......+++.+|+.||+..  ..+++|+|++|.||+++ ++.++++||+.+.
T Consensus        81 ~~-------~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~  135 (170)
T cd05151          81 ED-------F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAG  135 (170)
T ss_pred             cc-------c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEeccccc
Confidence            30       1   11345678999999999981  11259999999999998 5679999999764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.89  E-value=9.5e-09  Score=80.53  Aligned_cols=100  Identities=16%  Similarity=0.077  Sum_probs=79.4

Q ss_pred             CCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 048314           57 PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECE  136 (274)
Q Consensus        57 ~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~  136 (274)
                      .++..+|+.+++++.--.|.--+=+..+.+...|+|||.+|-.|.+.+...         ...++..+-.-+.-||..  
T Consensus        43 r~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~~--  111 (204)
T COG3642          43 RERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEYIEGELLKDALEEA---------RPDLLREVGRLVGKLHKA--  111 (204)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEeCChhHHHHHHhc---------chHHHHHHHHHHHHHHhc--
Confidence            345678999999987655544444556677788999999999999999752         255677777778889999  


Q ss_pred             CCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                       +|+|+||+++|+.+.+.. +-++|||++....
T Consensus       112 -givHGDLTtsNiIl~~~~-i~~IDfGLg~~s~  142 (204)
T COG3642         112 -GIVHGDLTTSNIILSGGR-IYFIDFGLGEFSD  142 (204)
T ss_pred             -CeecCCCccceEEEeCCc-EEEEECCcccccc
Confidence             999999999999998764 8999999986543

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.86  E-value=1.7e-08  Score=81.09  Aligned_cols=97  Identities=11%  Similarity=-0.011  Sum_probs=74.3

Q ss_pred             HHHHHHhcCCC--CccceEeEEEEeCCcceEEEEeCCCCCHHH-HHHhCCCCCCCHHHHHHHHHHHHHHHHHH-hcCCCC
Q 048314           62 TLTSIVSRVSW--TTDIEVSSVAMRGSKPSTEAALDLPWDLAY-IIFCSAERNPYWNQRVRIALDVAKGILYL-HDECEP  137 (274)
Q Consensus        62 ~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv~e~~~~gsL~~-~l~~~~~~~l~~~~~~~~~~~i~~~l~~l-h~~~~~  137 (274)
                      +|++.|+++..  -++.+.+++    ..-+|||||+.+..+.. .+.   ...++......+..+++.++..+ |..   
T Consensus        75 kE~r~L~rl~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lk---d~~~~~~~~~~i~~~i~~~l~~l~H~~---  144 (197)
T cd05146          75 KEMHNLKRMQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLK---DAKLNDEEMKNAYYQVLSMMKQLYKEC---  144 (197)
T ss_pred             HHHHHHHHHHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhh---ccccCHHHHHHHHHHHHHHHHHHHHhC---
Confidence            79999999874  456777765    45789999997654422 222   22455566677889999999988 888   


Q ss_pred             CcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +++|+|+++.||++.+ +.+.++|||.+....
T Consensus       145 glVHGDLs~~NIL~~~-~~v~iIDF~qav~~~  175 (197)
T cd05146         145 NLVHADLSEYNMLWHD-GKVWFIDVSQSVEPT  175 (197)
T ss_pred             CeecCCCCHHHEEEEC-CcEEEEECCCceeCC
Confidence            9999999999999974 679999999876544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.85  E-value=2.6e-08  Score=84.19  Aligned_cols=106  Identities=14%  Similarity=-0.029  Sum_probs=83.7

Q ss_pred             cHHHHHHHHhcCCCCcc--ceEeEEEEe-----CCcceEEEEeCCCC-CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Q 048314           59 RPLTLTSIVSRVSWTTD--IEVSSVAMR-----GSKPSTEAALDLPW-DLAYIIFCSAERNPYWNQRVRIALDVAKGILY  130 (274)
Q Consensus        59 ~~~~e~~~l~~l~h~ni--v~l~~~~~~-----~~~~~lv~e~~~~g-sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~  130 (274)
                      .+.+|...+.++...+|  +..+++...     ...-++|+|++++- +|.+++........+......++.+++..+.-
T Consensus        74 ~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~  153 (268)
T PRK15123         74 GADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRD  153 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            47789998888864444  566666543     23468999999875 89999864333455667788899999999999


Q ss_pred             HhcCCCCCcccCCCCCCceEEcC-------CCcEEEecccccee
Q 048314          131 LHDECEPPILHCDIKPQNILMDE-------FWTAKISDFGLAKL  167 (274)
Q Consensus       131 lh~~~~~~i~h~dl~~~nil~~~-------~~~~kl~d~g~~~~  167 (274)
                      ||+.   |++|+|+++.||+++.       +..+.++||+.+..
T Consensus       154 LH~~---Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        154 MHAA---GINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHC---cCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            9999   9999999999999975       46789999998754

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.83  E-value=1.3e-08  Score=92.22  Aligned_cols=104  Identities=19%  Similarity=0.109  Sum_probs=75.5

Q ss_pred             cHHHHHHHHhcCC----CCccceEeEEEEe-CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHH-HHHHHh
Q 048314           59 RPLTLTSIVSRVS----WTTDIEVSSVAMR-GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAK-GILYLH  132 (274)
Q Consensus        59 ~~~~e~~~l~~l~----h~niv~l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~-~l~~lh  132 (274)
                      +|.+|+..+.++.    |.+-+.+-.++.+ .+..+|||||++|++|.++.... ....+   ...++..++. .+..+|
T Consensus       199 df~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~-~~~~~---~~~ia~~~~~~~l~ql~  274 (437)
T TIGR01982       199 DLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALD-EAGLD---RKALAENLARSFLNQVL  274 (437)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHH-hcCCC---HHHHHHHHHHHHHHHHH
Confidence            3566777776653    4444555444433 34579999999999999887642 11222   3456666655 467889


Q ss_pred             cCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          133 DECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       133 ~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      ..   |++|+|++|.||++..++.++++|||++....
T Consensus       275 ~~---g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       275 RD---GFFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             hC---CceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            88   99999999999999999999999999987654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.80  E-value=2.9e-08  Score=77.67  Aligned_cols=110  Identities=17%  Similarity=0.129  Sum_probs=82.1

Q ss_pred             CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 048314           56 SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLP-WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDE  134 (274)
Q Consensus        56 ~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~-gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~  134 (274)
                      ...+..+|++.|.++.--.|.----++.+...-.|+|||.++ .++.+++...-...........++..+-..+.-||.+
T Consensus        53 tr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~n  132 (229)
T KOG3087|consen   53 TRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDN  132 (229)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhC
Confidence            355677899999988754553333345566667899999976 5899998864333333333478899999999999999


Q ss_pred             CCCCcccCCCCCCceEEcCCC---cEEEeccccceec
Q 048314          135 CEPPILHCDIKPQNILMDEFW---TAKISDFGLAKLL  168 (274)
Q Consensus       135 ~~~~i~h~dl~~~nil~~~~~---~~kl~d~g~~~~~  168 (274)
                         +++|+||+.+||++..++   .+-++|||++...
T Consensus       133 ---diiHGDLTTSNill~~~~~~~~~~lIdfgls~~s  166 (229)
T KOG3087|consen  133 ---DIIHGDLTTSNILLRSDGNQITPILIDFGLSSVS  166 (229)
T ss_pred             ---CeecccccccceEEecCCCcCceEEEeecchhcc
Confidence               999999999999986543   4579999998654

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.73  E-value=6.7e-09  Score=95.40  Aligned_cols=138  Identities=16%  Similarity=0.244  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--------------------CCCcCCCcccc
Q 048314          121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--------------------DKGCMAPECYK  180 (274)
Q Consensus       121 ~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--------------------~~~~~ape~~~  180 (274)
                      +.+++.|+.|+|..  .+++|+++.|++|.+..++.-|++.|+.+....                    ...|.|||++.
T Consensus       105 l~~v~dgl~flh~s--Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  105 LGNVADGLAFLHRS--AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhcccchhhhhccC--cceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            34555899999987  589999999999999999999999988764322                    23589999999


Q ss_pred             cCCCccccceeehhHhHHHHhhc-CCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhcc
Q 048314          181 RTPISVKADVYGYGIVLLETICC-WENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQD  259 (274)
Q Consensus       181 ~~~~~~~~Di~s~G~~l~el~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  259 (274)
                      ....+.++|++|+|+++|.+..| +..+...+...... ...    .  .......    ..+...+.++.+-+.+++..
T Consensus       183 ~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~-~~~----~--~~~~~~~----~~s~~~p~el~~~l~k~l~~  251 (700)
T KOG2137|consen  183 GTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYS-FSR----N--LLNAGAF----GYSNNLPSELRESLKKLLNG  251 (700)
T ss_pred             cccccccccceeeeeEEEEEecCCcchhhccCCcchhh-hhh----c--ccccccc----cccccCcHHHHHHHHHHhcC
Confidence            87788999999999999998844 44444332111110 000    0  0000000    13344556777788889999


Q ss_pred             CCCCCCChhhHH
Q 048314          260 EPALRPSMKCVV  271 (274)
Q Consensus       260 dp~~Rps~~evl  271 (274)
                      ++.-||++.++.
T Consensus       252 ~~~~rp~~~~l~  263 (700)
T KOG2137|consen  252 DSAVRPTLDLLL  263 (700)
T ss_pred             CcccCcchhhhh
Confidence            999999887764

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.69  E-value=2.6e-07  Score=82.63  Aligned_cols=135  Identities=13%  Similarity=0.117  Sum_probs=106.4

Q ss_pred             HHHHHHHhcCCCCccceEeEEEE----eCCcceEEEEeCCC-CCHHHHHHhCC-------------CCCCCHHHHHHHHH
Q 048314           61 LTLTSIVSRVSWTTDIEVSSVAM----RGSKPSTEAALDLP-WDLAYIIFCSA-------------ERNPYWNQRVRIAL  122 (274)
Q Consensus        61 ~~e~~~l~~l~h~niv~l~~~~~----~~~~~~lv~e~~~~-gsL~~~l~~~~-------------~~~l~~~~~~~~~~  122 (274)
                      ..-+++++++.|+|+|++-.++.    .+..+++||.|.++ ++|.+......             +...++..+|.++.
T Consensus       321 t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~  400 (655)
T KOG3741|consen  321 TSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYIS  400 (655)
T ss_pred             hHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHH
Confidence            34588899999999999988875    35678999999865 78888776431             22367899999999


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecCCCCcCCCcccccCCCccccceeehhHhHHHHhh
Q 048314          123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETIC  202 (274)
Q Consensus       123 ~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~  202 (274)
                      |+..||.++|+.   |+--+-|.+.+|++.++..++++..|......... .+|  +.   .-.+.|.-.||.+++.|.+
T Consensus       401 QLtaaL~sIHss---GLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~-~~~--le---~~Qq~D~~~lG~ll~aLAt  471 (655)
T KOG3741|consen  401 QLTAALYSIHSS---GLACKTLDLKKILVTGKMRIRISGCGIMDVLQEDP-TEP--LE---SQQQNDLRDLGLLLLALAT  471 (655)
T ss_pred             HHHHHHHHHHhc---CceeecccHhHeEeeCcceEEEecccceeeecCCC-Ccc--hh---HHhhhhHHHHHHHHHHHhh
Confidence            999999999999   99889999999999999899998888765543221 111  11   1246788899999999999


Q ss_pred             cC
Q 048314          203 CW  204 (274)
Q Consensus       203 g~  204 (274)
                      |.
T Consensus       472 ~~  473 (655)
T KOG3741|consen  472 GT  473 (655)
T ss_pred             cc
Confidence            84

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.67  E-value=2.4e-07  Score=75.57  Aligned_cols=109  Identities=21%  Similarity=0.108  Sum_probs=87.1

Q ss_pred             CCCCcHHHHHHHHhcCCCCc--cceEeEEEEeCC----cceEEEEeCCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 048314           55 YSPSRPLTLTSIVSRVSWTT--DIEVSSVAMRGS----KPSTEAALDLP-WDLAYIIFCSAERNPYWNQRVRIALDVAKG  127 (274)
Q Consensus        55 ~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~~----~~~lv~e~~~~-gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~  127 (274)
                      ....+..+|...+.++...+  +.+.+++.....    .-++|+|++++ -+|.+++....  .++......++.+++..
T Consensus        53 ~~~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~--~~~~~~~~~ll~~l~~~  130 (206)
T PF06293_consen   53 LRRSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWE--QLDPSQRRELLRALARL  130 (206)
T ss_pred             ccchHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhc--ccchhhHHHHHHHHHHH
Confidence            34556788988888876544  477777766532    34899999987 48999998622  26677788999999999


Q ss_pred             HHHHhcCCCCCcccCCCCCCceEEcCCC---cEEEeccccceec
Q 048314          128 ILYLHDECEPPILHCDIKPQNILMDEFW---TAKISDFGLAKLL  168 (274)
Q Consensus       128 l~~lh~~~~~~i~h~dl~~~nil~~~~~---~~kl~d~g~~~~~  168 (274)
                      ++-||+.   |++|+|+++.|||+..+.   .+.++||+.++..
T Consensus       131 i~~lH~~---gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  131 IAKLHDA---GIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             HHHHHHC---cCCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            9999999   999999999999998876   7899999987653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.62  E-value=6.5e-08  Score=79.21  Aligned_cols=134  Identities=13%  Similarity=0.055  Sum_probs=95.9

Q ss_pred             cCCCCCCCCcchhHHHH-----HHHHHhcCCC---CCCcHHHHHHHHhcCCC--CccceEeEEEEeC---CcceEEEEeC
Q 048314           29 LNDRNSPRSKSVWSCMR-----ALMATVNSPY---SPSRPLTLTSIVSRVSW--TTDIEVSSVAMRG---SKPSTEAALD   95 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~-----~~~~~~~~~~---~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~---~~~~lv~e~~   95 (274)
                      .++.|..  +.+|++..     .++|......   ....+..|++++..+.+  .++.+++.+..+.   +..++||||+
T Consensus         5 ~l~~G~~--n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i   82 (223)
T cd05154           5 QLSGGQS--NLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERV   82 (223)
T ss_pred             ecCCCcc--ceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEe
Confidence            3667777  77887522     1222222211   35677899999999986  3468888887654   3678999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC----------------------------------------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC----------------------------------------  135 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~----------------------------------------  135 (274)
                      ++.++.+.+..   ..++......++.+++..|..||+..                                        
T Consensus        83 ~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (223)
T cd05154          83 DGRVLRDRLLR---PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMER  159 (223)
T ss_pred             CCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHH
Confidence            99888776531   34677778888888888888888531                                        


Q ss_pred             -------------CCCcccCCCCCCceEEcC--CCcEEEecccccee
Q 048314          136 -------------EPPILHCDIKPQNILMDE--FWTAKISDFGLAKL  167 (274)
Q Consensus       136 -------------~~~i~h~dl~~~nil~~~--~~~~kl~d~g~~~~  167 (274)
                                   ...++|+|+.+.||+++.  +..+.++||+.+..
T Consensus       160 ~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         160 LLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             HHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                         135789999999999988  56689999987643

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.54  E-value=2e-07  Score=74.54  Aligned_cols=98  Identities=18%  Similarity=0.084  Sum_probs=66.1

Q ss_pred             HHHHHHHHhcCCCC--ccceEeEEEEeCCcceEEEEeCC--CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH-HhcC
Q 048314           60 PLTLTSIVSRVSWT--TDIEVSSVAMRGSKPSTEAALDL--PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILY-LHDE  134 (274)
Q Consensus        60 ~~~e~~~l~~l~h~--niv~l~~~~~~~~~~~lv~e~~~--~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~-lh~~  134 (274)
                      ..+|.+.|.++..-  ++.+.+.+    ..-+|||||++  |..+......    .++......++.+++..+.. +|..
T Consensus        55 ~~~E~~~L~~l~~~Gv~vP~p~~~----~~~~ivME~I~~~G~~~~~l~~~----~~~~~~~~~~~~~il~~~~~~~~~~  126 (188)
T PF01163_consen   55 AKKEFRNLKRLYEAGVPVPKPYDY----NRNVIVMEYIGEDGVPLPRLKDV----DLSPEEPKELLEEILEEIIKMLHKA  126 (188)
T ss_dssp             HHHHHHHHHHCCCTT-SS--EEEE----ETTEEEEE--EETTEEGGCHHHC----GGGGSTHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHCCccCCcEEEE----eCCEEEEEecCCCccchhhHHhc----cccchhHHHHHHHHHHHHHHHHHhc
Confidence            45799999999865  56777755    24589999998  6555544432    12234456677777775554 5788


Q ss_pred             CCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          135 CEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       135 ~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                         |++|+|+++.||++..+ .+.++|||.+....
T Consensus       127 ---givHGDLs~~NIlv~~~-~~~iIDf~qav~~~  157 (188)
T PF01163_consen  127 ---GIVHGDLSEYNILVDDG-KVYIIDFGQAVDSS  157 (188)
T ss_dssp             ---TEEESS-STTSEEEETT-CEEE--GTTEEETT
T ss_pred             ---CceecCCChhhEEeecc-eEEEEecCcceecC
Confidence               99999999999999887 89999999876654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.48  E-value=3.6e-07  Score=84.27  Aligned_cols=100  Identities=15%  Similarity=0.036  Sum_probs=67.9

Q ss_pred             HHHHHHHHhcCC----CCccceEeEEEEe-CCcceEEEEeCCCCCHHHHHHhCCCC----CCCHHHHHHHHHHHHHHHHH
Q 048314           60 PLTLTSIVSRVS----WTTDIEVSSVAMR-GSKPSTEAALDLPWDLAYIIFCSAER----NPYWNQRVRIALDVAKGILY  130 (274)
Q Consensus        60 ~~~e~~~l~~l~----h~niv~l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~----~l~~~~~~~~~~~i~~~l~~  130 (274)
                      +.+|+..+.++.    +.+.+.+-.++++ ....+|||||+.|+.+.++-.....+    .+.......++.|+      
T Consensus       203 ~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qi------  276 (537)
T PRK04750        203 LMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQV------  276 (537)
T ss_pred             HHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHH------
Confidence            456666666653    4555666666655 45678999999999998753211111    13333333344444      


Q ss_pred             HhcCCCCCcccCCCCCCceEEcCCC----cEEEeccccceecC
Q 048314          131 LHDECEPPILHCDIKPQNILMDEFW----TAKISDFGLAKLLS  169 (274)
Q Consensus       131 lh~~~~~~i~h~dl~~~nil~~~~~----~~kl~d~g~~~~~~  169 (274)
                       +..   |++|+|++|.||+++.++    .+++.|||+.....
T Consensus       277 -f~~---GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        277 -FRD---GFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN  315 (537)
T ss_pred             -HhC---CeeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence             345   999999999999999887    89999999987655

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.38  E-value=5.2e-06  Score=72.95  Aligned_cols=181  Identities=12%  Similarity=0.077  Sum_probs=114.8

Q ss_pred             ceEEEEeCCC-CCHHHHHHhC----CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec-
Q 048314           88 PSTEAALDLP-WDLAYIIFCS----AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD-  161 (274)
Q Consensus        88 ~~lv~e~~~~-gsL~~~l~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d-  161 (274)
                      .-+.|...++ .-+.+++.-.    ......|...++.++.++.+.+-||..   |..-+|+.++|+|+++++.+.|.| 
T Consensus        85 iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~---Gh~vGDVn~~~~lVsd~~~V~LVds  161 (637)
T COG4248          85 IGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEH---GHVVGDVNQNSFLVSDDSKVVLVDS  161 (637)
T ss_pred             eEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhc---CCcccccCccceeeecCceEEEEcc
Confidence            4567776644 3444444311    234489999999999999999999999   999999999999999999988876 


Q ss_pred             --cccc-------eecCCCCcCCCcccccC-----CCccccceeehhHhHHHHhhc-CCCccccCCC-----hhhHHHHH
Q 048314          162 --FGLA-------KLLSDKGCMAPECYKRT-----PISVKADVYGYGIVLLETICC-WENMEIDASK-----PEEIILTN  221 (274)
Q Consensus       162 --~g~~-------~~~~~~~~~ape~~~~~-----~~~~~~Di~s~G~~l~el~~g-~~p~~~~~~~-----~~~~~~~~  221 (274)
                        |.+.       ...+...|++||.-.-.     .-+...|.|.+|+++++++.| ++||......     +.+..+..
T Consensus       162 Dsfqi~~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~  241 (637)
T COG4248         162 DSFQINANGTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAH  241 (637)
T ss_pred             cceeeccCCceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhc
Confidence              3322       12335679999965422     346789999999999998776 9999754211     11111111


Q ss_pred             HHHHHHhhhhhhhhhcCCccCHH-HHHHHHHHHHHhhcc--CCCCCCChhhHH
Q 048314          222 WVYKCFINRELNKLVRGTEVDKK-NLENLVKVGLWCVQD--EPALRPSMKCVV  271 (274)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~cl~~--dp~~Rps~~evl  271 (274)
                      ..+..-.+......-.+...|.. .++++..+-.+|+..  ++.-|||++--+
T Consensus       242 g~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~  294 (637)
T COG4248         242 GRFAYASDQRRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAKAWV  294 (637)
T ss_pred             ceeeechhccCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHHHHH
Confidence            11111011111111112223332 245667777788876  356799987533

>PRK09902 hypothetical protein; Provisional

Probab=98.31  E-value=7.7e-06  Score=66.22  Aligned_cols=110  Identities=9%  Similarity=-0.083  Sum_probs=84.8

Q ss_pred             CCCCcHHHHHHHHhcCCCCc--cceEeEEEEe----CCcceEEEEeCCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 048314           55 YSPSRPLTLTSIVSRVSWTT--DIEVSSVAMR----GSKPSTEAALDLP-WDLAYIIFCSAERNPYWNQRVRIALDVAKG  127 (274)
Q Consensus        55 ~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~----~~~~~lv~e~~~~-gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~  127 (274)
                      .....|.+|...+.++...+  +.+.+.....    .-+-+||+|-+++ -+|.+++.+..-...+...+..++.+++..
T Consensus        61 ~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~  140 (216)
T PRK09902         61 FGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALA  140 (216)
T ss_pred             CCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHH
Confidence            45667889999999987433  4555522222    1245899997654 689999876444456788888999999999


Q ss_pred             HHHHhcCCCCCcccCCCCCCceEEcCCCc--EEEecccccee
Q 048314          128 ILYLHDECEPPILHCDIKPQNILMDEFWT--AKISDFGLAKL  167 (274)
Q Consensus       128 l~~lh~~~~~~i~h~dl~~~nil~~~~~~--~kl~d~g~~~~  167 (274)
                      ++-||+.   |+.|+|+-+.||+++.++.  +.++||..++.
T Consensus       141 ia~LH~~---Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        141 FKKMHSV---NRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             HHHHHHC---CCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            9999999   9999999999999986566  89999987654

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.21  E-value=6.9e-06  Score=65.87  Aligned_cols=100  Identities=15%  Similarity=0.047  Sum_probs=80.2

Q ss_pred             HHHHHHhcCCC-CccceEeEEEEeCCcceEEEEeCCCCCHHHH---HHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC
Q 048314           62 TLTSIVSRVSW-TTDIEVSSVAMRGSKPSTEAALDLPWDLAYI---IFCSAERNPYWNQRVRIALDVAKGILYLHDECEP  137 (274)
Q Consensus        62 ~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~---l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~  137 (274)
                      .|.-+|+.+++ +++++++|.|.    .++|.||...+++...   +.+  -...+|..+.+++.+++..+.+++.....
T Consensus         8 ~E~lll~~l~~~~~~pk~lG~CG----~~~v~E~~~~~~~~~~~~~l~~--~~~~~w~~R~~iA~~lL~~l~~l~~~~~~   81 (188)
T PF12260_consen    8 NEPLLLQLLQGSEPFPKLLGSCG----RFYVVEYVGAGSLYGIYRPLSQ--FLQSPWEQRAKIALQLLELLEELDHGPLG   81 (188)
T ss_pred             cHHHHHHHcCCCCCCCCeeeECC----CEEEEEeecCcccccccccccc--ccccCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            58888888886 69999999994    4779999987655321   111  12369999999999999999999985444


Q ss_pred             CcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .+.-.|++++|+.+.+++.+|+.|......
T Consensus        82 ~~~lcDv~~~nfgv~~~~~lk~iDld~v~~  111 (188)
T PF12260_consen   82 FFYLCDVSPDNFGVNDDGRLKLIDLDDVFV  111 (188)
T ss_pred             cEEEeecchHHeEEeCCCcEEEEechhcch
Confidence            678889999999999999999999876543

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.89  E-value=3.4e-05  Score=75.43  Aligned_cols=183  Identities=16%  Similarity=0.094  Sum_probs=125.9

Q ss_pred             HHHHHHhcCCCCccceEeEEEEeCC----cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC
Q 048314           62 TLTSIVSRVSWTTDIEVSSVAMRGS----KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEP  137 (274)
Q Consensus        62 ~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~  137 (274)
                      -|...+.++.|+|+++.++|-.+.-    ...+..|+|+.-++.+.++.  -+..+..+.+.+..++..||+|+|+.   
T Consensus       231 ~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~--v~~i~~~~~r~~~~~~~~GL~~~h~~---  305 (1351)
T KOG1035|consen  231 IELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQS--VGSIPLETLRILHQKLLEGLAYLHSL---  305 (1351)
T ss_pred             HHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhh--ccccCHHHHHHHHHHHhhhHHHHHHh---
Confidence            4677888899999999999976533    23455588988888888875  45688899999999999999999998   


Q ss_pred             CcccCCCCCC---ceEEcCCCcEEEe--ccccceecCC----------CCcCCCcccccCCCcc--ccceeehhHhHHHH
Q 048314          138 PILHCDIKPQ---NILMDEFWTAKIS--DFGLAKLLSD----------KGCMAPECYKRTPISV--KADVYGYGIVLLET  200 (274)
Q Consensus       138 ~i~h~dl~~~---nil~~~~~~~kl~--d~g~~~~~~~----------~~~~ape~~~~~~~~~--~~Di~s~G~~l~el  200 (274)
                      ...|.-+..+   +-..+..+...++  ||+.++....          ..+-++|.........  ..|+|.+|.....+
T Consensus       306 ~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~~~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~  385 (1351)
T KOG1035|consen  306 SLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKSFSDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLLLQL  385 (1351)
T ss_pred             ccceeEEecccccccccCccceeecchhhhcccccCCCcccchhhcCccccccccccccccchhhhhhHHHHHHHHHhhh
Confidence            6666555544   2333444555555  7777665542          2355666555544443  47999999999998


Q ss_pred             hhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          201 ICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       201 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ..|..+-.....                   ...+.+.     .....+.+....|+..++++|+++.+++..
T Consensus       386 ~~~~~i~~~~~~-------------------~~~~l~~-----~~~~~~~d~~~~~~~~~~~~Rl~~~~ll~~  434 (1351)
T KOG1035|consen  386 SQGEDISEKSAV-------------------PVSLLDV-----LSTSELLDALPKCLDEDSEERLSALELLTH  434 (1351)
T ss_pred             hhcCcccccccc-------------------hhhhhcc-----ccchhhhhhhhhhcchhhhhccchhhhhhc
Confidence            887655432200                   0011111     111156778888999999999999998764

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.86  E-value=4.6e-05  Score=63.62  Aligned_cols=95  Identities=14%  Similarity=-0.022  Sum_probs=64.4

Q ss_pred             HHHHHHHhcCCCC--ccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 048314           61 LTLTSIVSRVSWT--TDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP  138 (274)
Q Consensus        61 ~~e~~~l~~l~h~--niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~  138 (274)
                      .+|.++|.+|.-.  .+.+-+++    +.-.+||||..|--|...-       +.....-.++..|+.-+.-.-..   |
T Consensus       157 ~rEf~~L~~L~~~G~~VP~P~~~----nRHaVvMe~ieG~eL~~~r-------~~~en~~~il~~il~~~~~~~~~---G  222 (304)
T COG0478         157 EREFEALQRLYPEGVKVPKPIAW----NRHAVVMEYIEGVELYRLR-------LDVENPDEILDKILEEVRKAYRR---G  222 (304)
T ss_pred             HHHHHHHHHhhhcCCCCCCcccc----ccceeeeehcccceeeccc-------CcccCHHHHHHHHHHHHHHHHHc---C
Confidence            4799999998754  56776655    5678999999885554332       11222223333333333322345   9


Q ss_pred             cccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       139 i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      ++|+|+++-||+++.++.+.++||--+....
T Consensus       223 iVHGDlSefNIlV~~dg~~~vIDwPQ~v~~~  253 (304)
T COG0478         223 IVHGDLSEFNILVTEDGDIVVIDWPQAVPIS  253 (304)
T ss_pred             ccccCCchheEEEecCCCEEEEeCcccccCC
Confidence            9999999999999999999999997654433

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.85  E-value=3e-06  Score=77.86  Aligned_cols=140  Identities=15%  Similarity=0.028  Sum_probs=102.8

Q ss_pred             HHHHHHHHhcCCCCc-cceEeEEEEeCCcceEEEEeCCCC-CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC
Q 048314           60 PLTLTSIVSRVSWTT-DIEVSSVAMRGSKPSTEAALDLPW-DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEP  137 (274)
Q Consensus        60 ~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~e~~~~g-sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~  137 (274)
                      ..-++++|.+++||| .+..++-+..++..+++++++..+ |-..-+.. .+..+...+...+++.-..+++++|+.   
T Consensus       280 ~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~~~~~~~-se~~~~~~~~~~~~r~et~~l~~l~~~---  355 (829)
T KOG0576|consen  280 RRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRSSALEMTV-SEIALEQYQFAYPLRKETRPLAELHSS---  355 (829)
T ss_pred             hHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcCCccccccCCh-hhHhhhhhhhhhhhhhhcccccccccc---
Confidence            346889999999999 777777778888899999999876 22221111 112244444555667777899999986   


Q ss_pred             CcccCCCCCCceEEcCCCcEEEeccccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCc
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENM  207 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~  207 (274)
                      .=+|+|    ||+..+ ...+..+|+......          ++.+++||......+..+.|.|+.+.-..++.-|.+|-
T Consensus       356 ~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr  430 (829)
T KOG0576|consen  356 YKVHRD----NILGSE-EEVKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPR  430 (829)
T ss_pred             cccCcc----cccccc-cccccccccCCcccCcccccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCC
Confidence            567887    666544 567888888764332          67899999999999999999999998777777777665


Q ss_pred             c
Q 048314          208 E  208 (274)
Q Consensus       208 ~  208 (274)
                      .
T Consensus       431 ~  431 (829)
T KOG0576|consen  431 S  431 (829)
T ss_pred             C
Confidence            4

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=97.78  E-value=5.9e-05  Score=62.34  Aligned_cols=136  Identities=10%  Similarity=0.038  Sum_probs=77.2

Q ss_pred             ccCCCCCCCCcchhHH--HHHHHHHhcCCCCCCcHHHHHHHHhcCCCCc--cceEeEEEEeCCcceEEEEeCCCCC-HHH
Q 048314           28 SLNDRNSPRSKSVWSC--MRALMATVNSPYSPSRPLTLTSIVSRVSWTT--DIEVSSVAMRGSKPSTEAALDLPWD-LAY  102 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~--~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~~~gs-L~~  102 (274)
                      ..++.|..  +.+|+.  ...+.+............+|.++++.+..-+  +.+.++++.+.+...+|||+++|.. +..
T Consensus         7 ~~i~~G~t--~~~y~~~~~~~VlR~~~~~~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~~~~~   84 (226)
T TIGR02172         7 TQTGEGGN--GESYTHKTGKWMLKLYNPGFDKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKRSFSR   84 (226)
T ss_pred             eeecCCCC--cceeEecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCccchhh
Confidence            45788888  888883  1112222222223345678999999987544  4788888877777889999998853 211


Q ss_pred             HH---------------------HhCCCCCCCHHHHHH-HHH----------HHHHH-HHHHhcC-CCCCcccCCCCCCc
Q 048314          103 II---------------------FCSAERNPYWNQRVR-IAL----------DVAKG-ILYLHDE-CEPPILHCDIKPQN  148 (274)
Q Consensus       103 ~l---------------------~~~~~~~l~~~~~~~-~~~----------~i~~~-l~~lh~~-~~~~i~h~dl~~~n  148 (274)
                      .+                     +.......+...... +..          .+... ..+|... ....++|+|+.|.|
T Consensus        85 ~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~HgD~~~~N  164 (226)
T TIGR02172        85 IISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLHGDFQIGN  164 (226)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEecCCCCCc
Confidence            11                     110001111111111 000          01111 1222111 12357899999999


Q ss_pred             eEEcCCCcEEEeccccce
Q 048314          149 ILMDEFWTAKISDFGLAK  166 (274)
Q Consensus       149 il~~~~~~~kl~d~g~~~  166 (274)
                      +++++++ +.++||+.+.
T Consensus       165 ii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       165 LITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             EEEcCCC-cEEEechhcC
Confidence            9999877 9999998753

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.62  E-value=0.00013  Score=59.53  Aligned_cols=67  Identities=19%  Similarity=0.069  Sum_probs=52.9

Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..+|+|||++|..|.++..      ++.    .+...+.+++.-+|+.   |+.|+|..|.|+++.+++ ++++|++..+
T Consensus       117 ~~~ll~EYIeG~~l~d~~~------i~e----~~~~ki~~~ikqlH~~---G~~HGD~hpgNFlv~~~~-i~iID~~~k~  182 (229)
T PF06176_consen  117 SYVLLMEYIEGVELNDIED------IDE----DLAEKIVEAIKQLHKH---GFYHGDPHPGNFLVSNNG-IRIIDTQGKR  182 (229)
T ss_pred             EEEEEEEEecCeecccchh------cCH----HHHHHHHHHHHHHHHc---CCccCCCCcCcEEEECCc-EEEEECcccc
Confidence            4578999999988876643      222    2446677889999999   999999999999998654 8999998754


Q ss_pred             e
Q 048314          167 L  167 (274)
Q Consensus       167 ~  167 (274)
                      .
T Consensus       183 ~  183 (229)
T PF06176_consen  183 M  183 (229)
T ss_pred             c
Confidence            4

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.56  E-value=0.0013  Score=53.15  Aligned_cols=99  Identities=14%  Similarity=0.036  Sum_probs=70.8

Q ss_pred             CCCcHHHHHHHHhcCC------CCccceEeEEEEeCCcceEEEEeCCC------CCHHHHHHhCCCCCCCHHHHHHHHHH
Q 048314           56 SPSRPLTLTSIVSRVS------WTTDIEVSSVAMRGSKPSTEAALDLP------WDLAYIIFCSAERNPYWNQRVRIALD  123 (274)
Q Consensus        56 ~~~~~~~e~~~l~~l~------h~niv~l~~~~~~~~~~~lv~e~~~~------gsL~~~l~~~~~~~l~~~~~~~~~~~  123 (274)
                      ..+++.+|+.....+.      +.+|.+++|+..++--+-+|+|.+.+      .+|.+++..   +.++. .....+.+
T Consensus        54 ~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~---~~~~~-~~~~~L~~  129 (199)
T PF10707_consen   54 RYRQNRRELRYYKQLSLRRGVDWSHIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKE---GGLTE-ELRQALDE  129 (199)
T ss_pred             hhHHHHHHHHHHHHHhhccCCcccccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHc---CCccH-HHHHHHHH
Confidence            4566777877776666      78899999999998889999998632      368888864   34555 34434443


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCCCceEEcCC---C-cEEEec-ccc
Q 048314          124 VAKGILYLHDECEPPILHCDIKPQNILMDEF---W-TAKISD-FGL  164 (274)
Q Consensus       124 i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~---~-~~kl~d-~g~  164 (274)
                      .   ..||-+.   .|+.+|++|.||++...   . .+.++| ||.
T Consensus       130 f---~~~l~~~---~Iv~~dl~~~NIv~~~~~~~~~~lvlIDG~G~  169 (199)
T PF10707_consen  130 F---KRYLLDH---HIVIRDLNPHNIVVQRRDSGEFRLVLIDGLGE  169 (199)
T ss_pred             H---HHHHHHc---CCeecCCCcccEEEEecCCCceEEEEEeCCCC
Confidence            3   4566677   89999999999998633   2 466776 454

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.30  E-value=0.0023  Score=53.36  Aligned_cols=47  Identities=6%  Similarity=-0.186  Sum_probs=36.0

Q ss_pred             CCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceEEEEeCCCCCHHHH
Q 048314           57 PSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPSTEAALDLPWDLAYI  103 (274)
Q Consensus        57 ~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~  103 (274)
                      .....+|+.++..+. +--+.+++++....+..++|||+++|.++...
T Consensus        35 ~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~   82 (244)
T cd05150          35 TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAAAL   82 (244)
T ss_pred             ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHhHh
Confidence            345778999988875 33467888887777778999999998777643

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.02  E-value=0.0038  Score=57.68  Aligned_cols=103  Identities=16%  Similarity=0.088  Sum_probs=70.8

Q ss_pred             HHHHHHHhcCC----CCccceEeEEEEe-CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 048314           61 LTLTSIVSRVS----WTTDIEVSSVAMR-GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC  135 (274)
Q Consensus        61 ~~e~~~l~~l~----h~niv~l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~  135 (274)
                      .+|+..+.+++    ...=+++-.++++ .+...|+|||+.|-.+.+.... +..+++-+.+.....++..  .-+-.. 
T Consensus       209 ~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l-~~~g~d~k~ia~~~~~~f~--~q~~~d-  284 (517)
T COG0661         209 RREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAAL-KSAGIDRKELAELLVRAFL--RQLLRD-  284 (517)
T ss_pred             HHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHH-HhcCCCHHHHHHHHHHHHH--HHHHhc-
Confidence            45666666653    3334666666665 4567999999999999888644 2245564444333333322  222223 


Q ss_pred             CCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          136 EPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       136 ~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                        |+.|.|..|.|+++..++.+-+.|||......
T Consensus       285 --gffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~  316 (517)
T COG0661         285 --GFFHADPHPGNILVRSDGRIVLLDFGIVGRLD  316 (517)
T ss_pred             --CccccCCCccceEEecCCcEEEEcCcceecCC
Confidence              99999999999999999999999999987655

>PLN02876 acyl-CoA dehydrogenase

Probab=96.95  E-value=0.0039  Score=61.32  Aligned_cols=42  Identities=5%  Similarity=-0.187  Sum_probs=33.9

Q ss_pred             CcHHHHHHHHhcCC-CCcc--ceEeEEEEeC---CcceEEEEeCCCCC
Q 048314           58 SRPLTLTSIVSRVS-WTTD--IEVSSVAMRG---SKPSTEAALDLPWD   99 (274)
Q Consensus        58 ~~~~~e~~~l~~l~-h~ni--v~l~~~~~~~---~~~~lv~e~~~~gs   99 (274)
                      ..+.+|+++|+.+. |.++  .+++.+|.+.   +.+++||||++|..
T Consensus        83 ~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flVME~v~G~~  130 (822)
T PLN02876         83 HAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYIMEYLEGRI  130 (822)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEEEEecCCcc
Confidence            45779999999996 6665  8889888764   56899999998754

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=96.92  E-value=0.0039  Score=57.58  Aligned_cols=104  Identities=14%  Similarity=0.034  Sum_probs=66.6

Q ss_pred             HHHHHHHHhcC----CCCc---cceEeEEEEe-CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Q 048314           60 PLTLTSIVSRV----SWTT---DIEVSSVAMR-GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYL  131 (274)
Q Consensus        60 ~~~e~~~l~~l----~h~n---iv~l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~l  131 (274)
                      |.+|++...++    .|-+   =|++-.++++ .....|+||||+|..+.|.-.- ...+++-..+..-+.+...  .-+
T Consensus       241 F~~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i-~~~gi~~~~i~~~l~~~~~--~qI  317 (538)
T KOG1235|consen  241 FTKEAKNAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAI-DKRGISPHDILNKLVEAYL--EQI  317 (538)
T ss_pred             hHHHHHhHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHH-HHcCCCHHHHHHHHHHHHH--HHH
Confidence            55666655544    3545   2334455554 3467999999999877766543 2345555544433333322  222


Q ss_pred             hcCCCCCcccCCCCCCceEEcC----CCcEEEeccccceecC
Q 048314          132 HDECEPPILHCDIKPQNILMDE----FWTAKISDFGLAKLLS  169 (274)
Q Consensus       132 h~~~~~~i~h~dl~~~nil~~~----~~~~kl~d~g~~~~~~  169 (274)
                      -..   |.+|.|-.|.||++..    +..+.+-|+|+.....
T Consensus       318 f~~---GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is  356 (538)
T KOG1235|consen  318 FKT---GFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVIS  356 (538)
T ss_pred             Hhc---CCccCCCCCCcEEEecCCCCCccEEEEccccccccc
Confidence            233   9999999999999983    6788999999987665

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=96.86  E-value=0.0014  Score=51.43  Aligned_cols=125  Identities=12%  Similarity=-0.031  Sum_probs=81.6

Q ss_pred             ccccCCCCCCCCcchhHHHHH----HHHHhcCCCCCCcHHHHHHHHhcCCCCcc-ceEeEEEEeCCcceEEEEeCCCCCH
Q 048314           26 RSSLNDRNSPRSKSVWSCMRA----LMATVNSPYSPSRPLTLTSIVSRVSWTTD-IEVSSVAMRGSKPSTEAALDLPWDL  100 (274)
Q Consensus        26 ~~~~~g~g~~~~g~vy~~~~~----~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~gsL  100 (274)
                      ...++++|..  |.||.|.-.    +.|.-+....+..+..|+++|..++-.++ .+++.+..    -++.|||..|.+|
T Consensus        26 v~~~L~KG~~--s~Vyl~~~~~~~~a~Kvrr~ds~r~~l~kEakiLeil~g~~~~p~vy~yg~----~~i~me~i~G~~L   99 (201)
T COG2112          26 VEKELAKGTT--SVVYLGEWRGGEVALKVRRRDSPRRNLEKEAKILEILAGEGVTPEVYFYGE----DFIRMEYIDGRPL   99 (201)
T ss_pred             hhhhhhcccc--cEEEEeeccCceEEEEEecCCcchhhHHHHHHHHHHhhhcCCCceEEEech----hhhhhhhhcCcch
Confidence            3677999999  999998322    22222333455667899999999987665 66776643    3445999998888


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCC-CCceEEcCCCcEEEeccccceec
Q 048314          101 AYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIK-PQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus       101 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~-~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      .+.-..     .+-.++..    ++....-|-..   ||-|..++ |...++.++..+-|+||..++..
T Consensus       100 ~~~~~~-----~~rk~l~~----vlE~a~~LD~~---GI~H~El~~~~k~vlv~~~~~~iIDFd~At~k  156 (201)
T COG2112         100 GKLEIG-----GDRKHLLR----VLEKAYKLDRL---GIEHGELSRPWKNVLVNDRDVYIIDFDSATFK  156 (201)
T ss_pred             hhhhhc-----ccHHHHHH----HHHHHHHHHHh---ccchhhhcCCceeEEecCCcEEEEEccchhhc
Confidence            776543     13333333    33333333334   88888885 44555555668999999988643

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.84  E-value=0.0018  Score=58.94  Aligned_cols=161  Identities=17%  Similarity=0.109  Sum_probs=89.0

Q ss_pred             HHHHHHHhcCCCCccceEeEEEEe-CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 048314           61 LTLTSIVSRVSWTTDIEVSSVAMR-GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPI  139 (274)
Q Consensus        61 ~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i  139 (274)
                      +--..+++.+.|+|..+.+.+-.. .....+|+|++ +.||++.+..+.   +-.      ....        .+   ++
T Consensus        30 lgr~~~lktl~~~~l~~yl~~~r~~~~r~IVV~e~~-~~Sled~~~~~~---l~~------~s~~--------~~---~~   88 (725)
T KOG1093|consen   30 LGRFQYLKSLQHDNLCQYLDFSRGKHERVIVVMEHY-TMSLEDILKTGN---LKD------ESLL--------AH---GV   88 (725)
T ss_pred             hhhhHHHHhhcCccceeeEeeecCccceEEEEehhh-ccchHHHHHhcc---cch------hhhc--------cc---cc
Confidence            345667888899999988877643 34578999987 469999997632   110      0000        11   33


Q ss_pred             ccCCCCCCceEEcCCCcEEEeccccceecCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHH
Q 048314          140 LHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL  219 (274)
Q Consensus       140 ~h~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~  219 (274)
                      .|-+     +.       ..+| .+.    +. |  |     .+..+|+||||+|.++.++..|...+...    .....
T Consensus        89 ~~~~-----~~-------~~td-~~~----t~-~--~-----~~~~pKsdVwsl~~i~~el~L~~~l~~~~----~~s~~  139 (725)
T KOG1093|consen   89 LHLN-----II-------YITD-HFL----TK-Y--P-----SPIGPKSDVWSLGFIILELYLGISLEAEL----TESEY  139 (725)
T ss_pred             ceeh-----hh-------hccc-ccc----cc-C--C-----CCCCcchhhhhHHHHHHHHHHhhHHHHHH----HHHHH
Confidence            3322     11       1222 000    00 0  1     11225999999999999999887766422    11111


Q ss_pred             HHHHHHH-HhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHH
Q 048314          220 TNWVYKC-FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVV  271 (274)
Q Consensus       220 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl  271 (274)
                      ...+... ..+...........+-..+...+.++...|+...|..||...++.
T Consensus       140 l~~i~k~~~~d~~~~~~a~e~~~~~~~d~~~~~~~~~c~~~~~~ir~l~~~~~  192 (725)
T KOG1093|consen  140 LEILLKYYTDDQELLSTAMEHLIQLLADKKRLPLLKKCLWLEPIIRPLPMELS  192 (725)
T ss_pred             HHHHHHhccCchhHHHHHHHHHHHHhhhHhHHHHhccCCccccccccchhHHh
Confidence            1111111 111111111111123345566788999999999999999766654

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=96.64  E-value=0.0023  Score=53.13  Aligned_cols=30  Identities=30%  Similarity=0.533  Sum_probs=25.5

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++|+|+.+.|++++++....++||+.+.
T Consensus       164 ~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~  193 (235)
T cd05155         164 PVWFHGDLAPGNLLVQDGRLSAVIDFGCLG  193 (235)
T ss_pred             ceEEeCCCCCCcEEEECCCEEEEEeCcccC
Confidence            358999999999999887667899999753

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=96.18  E-value=0.00052  Score=69.41  Aligned_cols=146  Identities=8%  Similarity=-0.110  Sum_probs=100.8

Q ss_pred             HHHHHHhcCCCCccceEeEEEE--eCCcceEEEEeCCCCCHHHHHHhCCCCC--CCHHHHHHHHHHHHHHHHHHhcCCCC
Q 048314           62 TLTSIVSRVSWTTDIEVSSVAM--RGSKPSTEAALDLPWDLAYIIFCSAERN--PYWNQRVRIALDVAKGILYLHDECEP  137 (274)
Q Consensus        62 ~e~~~l~~l~h~niv~l~~~~~--~~~~~~lv~e~~~~gsL~~~l~~~~~~~--l~~~~~~~~~~~i~~~l~~lh~~~~~  137 (274)
                      .|..-++...|+++.....--.  +....+.+++|+..|.+.+.+-...++.  +....+...-.+...+..-.|+..+.
T Consensus      1278 ~e~de~~~~~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnl 1357 (2724)
T KOG1826|consen 1278 SERDELREAKHYLTEVDPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNL 1357 (2724)
T ss_pred             hhhhhhhhhhceeeecccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccC
Confidence            4555566678998877655432  3456789999999999999887642222  23222222223325555555554333


Q ss_pred             --CcccCCCCCCceEEcCCCcEEEeccccceecC-----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcC
Q 048314          138 --PILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCW  204 (274)
Q Consensus       138 --~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~  204 (274)
                        --+|+++++-|.++..+..+++.++|+.+...           ++.|+.|+....-.++.++|+|..|+.+|+.--|.
T Consensus      1358 g~T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n 1437 (2724)
T KOG1826|consen 1358 GNTNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGN 1437 (2724)
T ss_pred             CccchhhhhhhhccceecCCcccccccccccccCchHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccc
Confidence              36799999999999999999999999988322           33456666666667888899999999999887666


Q ss_pred             CCc
Q 048314          205 ENM  207 (274)
Q Consensus       205 ~p~  207 (274)
                      .+|
T Consensus      1438 ~~f 1440 (2724)
T KOG1826|consen 1438 AYF 1440 (2724)
T ss_pred             HHH
Confidence            665

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=96.18  E-value=0.014  Score=48.44  Aligned_cols=97  Identities=14%  Similarity=-0.076  Sum_probs=62.4

Q ss_pred             HHHHHHhcCCCC--ccceEeEEEEeCCcceEEEEeCCCC-CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCC
Q 048314           62 TLTSIVSRVSWT--TDIEVSSVAMRGSKPSTEAALDLPW-DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEP  137 (274)
Q Consensus        62 ~e~~~l~~l~h~--niv~l~~~~~~~~~~~lv~e~~~~g-sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~  137 (274)
                      .|...|+++.-.  .+.+-+++    ..-.|||||+... .-.-.|..   -++.......+..+++..+.-|-. .   
T Consensus       117 kEf~NL~R~~eAGVrvP~Pi~~----~~nVLvMEfIg~~g~pAP~LkD---v~~e~~e~~~~~~~~v~~~~~l~~~a---  186 (268)
T COG1718         117 KEFRNLKRAYEAGVRVPEPIAF----RNNVLVMEFIGDDGLPAPRLKD---VPLELEEAEGLYEDVVEYMRRLYKEA---  186 (268)
T ss_pred             HHHHHHHHHHHcCCCCCCceee----cCCeEEEEeccCCCCCCCCccc---CCcCchhHHHHHHHHHHHHHHHHHhc---
Confidence            566666665422  22333332    1347999998542 22222221   222333566677788887776665 5   


Q ss_pred             CcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +++|+||+.=|||+. ++.+.++|+|-+....
T Consensus       187 ~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~  217 (268)
T COG1718         187 GLVHGDLSEYNILVH-DGEPYIIDVSQAVTID  217 (268)
T ss_pred             CcccccchhhheEEE-CCeEEEEECccccccC
Confidence            999999999999999 7899999999875544

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=95.47  E-value=0.045  Score=44.64  Aligned_cols=110  Identities=15%  Similarity=0.017  Sum_probs=58.2

Q ss_pred             CcHHHHHHHHhcCCCC--ccceEeEEEEe---CCcceEEEEeCCCCCHHH----------------HHH---hC--CCCC
Q 048314           58 SRPLTLTSIVSRVSWT--TDIEVSSVAMR---GSKPSTEAALDLPWDLAY----------------IIF---CS--AERN  111 (274)
Q Consensus        58 ~~~~~e~~~l~~l~h~--niv~l~~~~~~---~~~~~lv~e~~~~gsL~~----------------~l~---~~--~~~~  111 (274)
                      .....|..+++.+...  .+.+++.++..   ....+++|+++++.++..                .+.   ..  ....
T Consensus        35 ~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~  114 (239)
T PF01636_consen   35 ERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSP  114 (239)
T ss_dssp             HHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEeccccccccccccccccccccchhhhhhcccccccccc
Confidence            3456788888887643  35677775533   345789999999988877                221   11  1112


Q ss_pred             CCHHHHH--H-------H------------HHHHHH-HHHHHhcC----CCCCcccCCCCCCceEEc-CCCcEEEecccc
Q 048314          112 PYWNQRV--R-------I------------ALDVAK-GILYLHDE----CEPPILHCDIKPQNILMD-EFWTAKISDFGL  164 (274)
Q Consensus       112 l~~~~~~--~-------~------------~~~i~~-~l~~lh~~----~~~~i~h~dl~~~nil~~-~~~~~kl~d~g~  164 (274)
                      +.+....  .       .            ...+.. .+..+++.    ....++|+|+.+.||+++ .++.+.++||+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~  194 (239)
T PF01636_consen  115 FADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQELEALLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFED  194 (239)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT
T ss_pred             cccccccccccccccccccccccchhhhhhhHHHHHHHHHHHHhhhccCCCcEEEEeccccccceeeeccceeEEEeccc
Confidence            2211100  0       0            011122 22333321    123799999999999999 556668999987


Q ss_pred             cee
Q 048314          165 AKL  167 (274)
Q Consensus       165 ~~~  167 (274)
                      +..
T Consensus       195 a~~  197 (239)
T PF01636_consen  195 AGW  197 (239)
T ss_dssp             -EE
T ss_pred             ceE
Confidence            643

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PRK10593 hypothetical protein; Provisional

Probab=94.47  E-value=0.032  Score=48.09  Aligned_cols=99  Identities=9%  Similarity=-0.040  Sum_probs=66.1

Q ss_pred             cccCCCCCCCCcchhHH----HHHHHHHhcCCCCCCcHHHHHHHHhcCCC---CccceEeEEEEe---CCcceEEEEeCC
Q 048314           27 SSLNDRNSPRSKSVWSC----MRALMATVNSPYSPSRPLTLTSIVSRVSW---TTDIEVSSVAMR---GSKPSTEAALDL   96 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~----~~~~~~~~~~~~~~~~~~~e~~~l~~l~h---~niv~l~~~~~~---~~~~~lv~e~~~   96 (274)
                      ..-+|+|..  +.||.-    -+.++|..........+..|...|+.+.-   -.+.+++++|..   .+..++|||+++
T Consensus        19 ~~~i~~G~~--~~vy~~~~~~~~~~~k~~~~~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVmE~i~   96 (297)
T PRK10593         19 VECISEQPY--AALWALYDSQGNPMPLMARSFSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLLERLR   96 (297)
T ss_pred             eeecCCccc--eeEEEEEcCCCCEEEEEecccccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEEeccC
Confidence            445899999  889973    12233332221234578899999998863   357899988854   366899999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDE  134 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~  134 (274)
                      ++++.+. .      .+......+..+++.+|+-||+.
T Consensus        97 G~~~~~~-~------~~~~~~~~l~~~l~~~La~LH~~  127 (297)
T PRK10593         97 GVSVEAP-A------RTPERWEQLKDQIVEGLLAWHRI  127 (297)
T ss_pred             CEecCCC-C------CCHHHHHHHHHHHHHHHHHHhCC
Confidence            8877651 1      22233445566777888888874

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=94.16  E-value=0.18  Score=43.76  Aligned_cols=33  Identities=30%  Similarity=0.523  Sum_probs=28.8

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +.++|+|+.+.|++++...-+-+.||+.+....
T Consensus       198 ~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGD  230 (321)
T COG3173         198 PVLVHGDYRPGNLIIDPGRPTGVLDWELATLGD  230 (321)
T ss_pred             ceeeeCCcccCCEEEeCCCeeEEEeccccccCC
Confidence            479999999999999998889999999886543

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=94.02  E-value=0.086  Score=45.79  Aligned_cols=135  Identities=10%  Similarity=0.019  Sum_probs=82.5

Q ss_pred             hhHHHHhhhccccccCCCCCCCCcchhHH-------------------HHHHHHH---hcCCCCCCc-------HHHHHH
Q 048314           15 SSLCTKLRNFCRSSLNDRNSPRSKSVWSC-------------------MRALMAT---VNSPYSPSR-------PLTLTS   65 (274)
Q Consensus        15 ~~l~~~~~~f~~~~~~g~g~~~~g~vy~~-------------------~~~~~~~---~~~~~~~~~-------~~~e~~   65 (274)
                      +-|+...--.+-.+-||-|.-  +.+|.|                   .+.++..   .+...+..+       ..+|..
T Consensus        85 ktL~~R~~v~svGnqIGVGKE--SDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfa  162 (465)
T KOG2268|consen   85 KTLSNRGSVESVGNQIGVGKE--SDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFA  162 (465)
T ss_pred             HHHHhcchhhhhccccccccc--cceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHH
Confidence            334433334555778999988  889987                   1111110   011111121       136888


Q ss_pred             HHhcCCCCc--cceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 048314           66 IVSRVSWTT--DIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCD  143 (274)
Q Consensus        66 ~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~d  143 (274)
                      .|+.|....  +.+-+    +.+.-++|||++.+..|.+.-+-     .+.+++..-+..+   +.-|-.+   |+||+|
T Consensus       163 fmkaL~e~gfpVPkpi----D~~RH~Vvmelv~g~Pl~~v~~v-----~d~~~ly~~lm~~---Iv~la~~---GlIHgD  227 (465)
T KOG2268|consen  163 FMKALYERGFPVPKPI----DHNRHCVVMELVDGYPLRQVRHV-----EDPPTLYDDLMGL---IVRLANH---GLIHGD  227 (465)
T ss_pred             HHHHHHHcCCCCCCcc----cccceeeHHHhhcccceeeeeec-----CChHHHHHHHHHH---HHHHHHc---Cceecc
Confidence            888775321  33333    44667999999988777655432     2334444333333   3334455   999999


Q ss_pred             CCCCceEEcCCCcEEEeccccce
Q 048314          144 IKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus       144 l~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..-=||++.++..++++||--..
T Consensus       228 FNEFNimv~dd~~i~vIDFPQmv  250 (465)
T KOG2268|consen  228 FNEFNIMVKDDDKIVVIDFPQMV  250 (465)
T ss_pred             cchheeEEecCCCEEEeechHhh
Confidence            99999999999999999997553

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=93.60  E-value=0.25  Score=40.62  Aligned_cols=100  Identities=18%  Similarity=0.144  Sum_probs=65.7

Q ss_pred             HHHHHHhcCC-C-CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHH
Q 048314           45 RALMATVNSP-Y-SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIAL  122 (274)
Q Consensus        45 ~~~~~~~~~~-~-~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~  122 (274)
                      ...||....+ . ...-|.++.+++.+++  .|+++..-  ..-..-++.|+|-...           .++..    ++.
T Consensus        88 L~lKKi~slp~~~~~~~y~nky~v~Armh--GilrL~ND--n~~~yGvIlE~Cy~~~-----------i~~~N----~i~  148 (308)
T PF07387_consen   88 LFLKKIRSLPCCINDALYFNKYRVFARMH--GILRLKND--NNYKYGVILERCYKIK-----------INFSN----FIT  148 (308)
T ss_pred             hhhhhccCCCcccchhhhhhhhhHHHHhh--heeEeecC--CCceeEEEEeeccCcc-----------cchhH----HHH
Confidence            3334444443 2 3455678899998874  47887732  3345679999985321           11111    111


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314          123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus       123 ~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      --+.+|.-.|+. ..+.+|+|..|+||+-+..|.+||.|-+.
T Consensus       149 agi~~L~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~~  189 (308)
T PF07387_consen  149 AGIKDLMDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPVC  189 (308)
T ss_pred             HhHHHHHHhhcc-CCCeecCCCChhheeecCCCCEEecChhh
Confidence            223567778854 45899999999999999999999999775

The function of this family is unknown.

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=93.49  E-value=0.35  Score=39.12  Aligned_cols=85  Identities=13%  Similarity=0.047  Sum_probs=59.9

Q ss_pred             CcHHHHHHHHhcCC---CCcc--ceEeEEEEeC------------------CcceEEEEeCCCCCHHHHHHhCCCCCCCH
Q 048314           58 SRPLTLTSIVSRVS---WTTD--IEVSSVAMRG------------------SKPSTEAALDLPWDLAYIIFCSAERNPYW  114 (274)
Q Consensus        58 ~~~~~e~~~l~~l~---h~ni--v~l~~~~~~~------------------~~~~lv~e~~~~gsL~~~l~~~~~~~l~~  114 (274)
                      +.|..|.+...+|+   +.++  |+++||..=.                  ....||.||.+...           .+..
T Consensus        99 ~PF~~ECRAfgRLke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-----------~~~~  167 (207)
T PF13095_consen   99 DPFNCECRAFGRLKEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-----------PLQI  167 (207)
T ss_pred             ChHHHHHHhhHHHHhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-----------ccch
Confidence            45778999988886   3456  9999997311                  12367888876532           1222


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314          115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus       115 ~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      .    -+.+|.+-+..+|..   ||+-+|+++.|..     .-+|+|||.+
T Consensus       168 ~----~~~~~~~dl~~~~k~---gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  168 R----DIPQMLRDLKILHKL---GIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             h----HHHHHHHHHHHHHHC---CeeeccCcccccc-----CCEEEecccC
Confidence            2    345666677889998   9999999999986     3488999864

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=90.47  E-value=0.85  Score=39.15  Aligned_cols=68  Identities=1%  Similarity=-0.253  Sum_probs=37.5

Q ss_pred             ccCCCCCCCCcchhHH----HHHHHHHhcCCCCCCcHHHHHHHHhcCC---CCccceEeEEEEeCCcceEEEEeCCCC
Q 048314           28 SLNDRNSPRSKSVWSC----MRALMATVNSPYSPSRPLTLTSIVSRVS---WTTDIEVSSVAMRGSKPSTEAALDLPW   98 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~----~~~~~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~g   98 (274)
                      .-++.|.+  ...|+.    ...++|... ......|..|..-|+.|.   --.+.+.+++....+..+|++||.+.+
T Consensus        23 ~~v~GG~i--~~a~~~~~~~~~~FvK~~~-~~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLlle~l~~~   97 (288)
T PF03881_consen   23 EPVSGGDI--NEAYRLDTDGGSYFVKVNS-ESGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLLEFLEMG   97 (288)
T ss_dssp             EEE--SSS--SEEEEEETTS-EEEEEEEE-GGGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEEE-----
T ss_pred             EecCCCCh--hheEEEECCCccEEEEecC-hhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEEEeecCC
Confidence            34677777  666644    112222222 334566888988888884   344789999988777789999998665

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PRK05231 homoserine kinase; Provisional

Probab=89.57  E-value=0.32  Score=42.14  Aligned_cols=32  Identities=22%  Similarity=0.274  Sum_probs=27.0

Q ss_pred             CCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          136 EPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       136 ~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      +.+++|+|+.+.||+++++....++||+.+..
T Consensus       186 p~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~  217 (319)
T PRK05231        186 PRGVIHADLFRDNVLFEGDRLSGFIDFYFACN  217 (319)
T ss_pred             CcccCCCCCCCCcEEEECCceEEEEecccccC
Confidence            34899999999999999776678999997643

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=89.49  E-value=0.99  Score=40.04  Aligned_cols=55  Identities=20%  Similarity=0.226  Sum_probs=46.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       112 l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      -.|.+...++.+.+.-++-+...  -..-||++...||+++ +|.+.|+||.+++...
T Consensus       318 ~~~~e~lsff~s~~sil~~lekk--f~fehrnlt~~niLId-~GnvtLIDfklsRl~~  372 (488)
T COG5072         318 DRSEEELSFFWSCISILDILEKK--FPFEHRNLTLDNILID-EGNVTLIDFKLSRLSY  372 (488)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhhc--CCcccccccccceeee-cCceEEEEeeeeeccc
Confidence            46888888888887777666654  3789999999999999 9999999999998543

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.46  E-value=0.53  Score=39.00  Aligned_cols=45  Identities=11%  Similarity=-0.153  Sum_probs=33.9

Q ss_pred             CCcHHHHHHHHhcCCC---CccceEeEEEEeCCcceEEEEeCCCCCHH
Q 048314           57 PSRPLTLTSIVSRVSW---TTDIEVSSVAMRGSKPSTEAALDLPWDLA  101 (274)
Q Consensus        57 ~~~~~~e~~~l~~l~h---~niv~l~~~~~~~~~~~lv~e~~~~gsL~  101 (274)
                      ...|..|+.-|..+.-   -++.+.+.+-.+.++.++|+||.+-|.+.
T Consensus        52 ~~~f~AEa~gL~~la~s~ti~VP~vi~~G~~~~~sylVle~L~~~~~d   99 (286)
T COG3001          52 LSMFTAEADGLELLARSNTITVPKVIAVGASRDHSYLVLEYLPTGPLD   99 (286)
T ss_pred             HHHHHHHHHHHHHHHhcCCccccceEEecCCCCeeEEEEeeccCCCCC
Confidence            4557788776666654   44678888888899999999999776554

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=88.81  E-value=1.1  Score=38.54  Aligned_cols=31  Identities=26%  Similarity=0.248  Sum_probs=26.7

Q ss_pred             CCCcccCCCCCCceEEcCC----CcEEEeccccce
Q 048314          136 EPPILHCDIKPQNILMDEF----WTAKISDFGLAK  166 (274)
Q Consensus       136 ~~~i~h~dl~~~nil~~~~----~~~kl~d~g~~~  166 (274)
                      ...++|+|+.+.||+++.+    ..+.++||..+.
T Consensus       178 ~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         178 PVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             CceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            4578999999999999874    789999998763

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=88.33  E-value=0.98  Score=38.96  Aligned_cols=31  Identities=29%  Similarity=0.429  Sum_probs=27.0

Q ss_pred             CCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314          136 EPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus       136 ~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      +.+++|+|+.+.|++++.+..+.++||+.+.
T Consensus       186 ~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       186 PRGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             CCccCCCCCCcCcEEEECCceEEEeeccccc
Confidence            3489999999999999988777899998763

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=87.45  E-value=0.99  Score=37.07  Aligned_cols=29  Identities=28%  Similarity=0.332  Sum_probs=25.5

Q ss_pred             CCcccCCCCCCceEEcC-CCcEEEeccccc
Q 048314          137 PPILHCDIKPQNILMDE-FWTAKISDFGLA  165 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~-~~~~kl~d~g~~  165 (274)
                      ..++|+|+.+.||++++ +..+.++||..+
T Consensus       170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a  199 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYA  199 (235)
T ss_pred             EEEEcCCCCcCcEEEeCCCCCEEEEEcccC
Confidence            36999999999999997 578999999865

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=86.25  E-value=0.63  Score=39.79  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=26.8

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .+++|+|+.|.|++++++..+.+.||+.+..
T Consensus       175 ~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~~  205 (296)
T cd05153         175 RGVIHADLFRDNVLFDGDELSGVIDFYFACT  205 (296)
T ss_pred             CcCCccCcCcccEEEeCCceEEEeehhhhcC
Confidence            3799999999999999887788999987643

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=85.93  E-value=1.9  Score=37.08  Aligned_cols=29  Identities=24%  Similarity=0.324  Sum_probs=24.8

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      .+++|+|+.+.|++++. ..+.++||+.+.
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            47899999999999987 567899998653

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=85.60  E-value=1.9  Score=37.72  Aligned_cols=28  Identities=36%  Similarity=0.567  Sum_probs=25.0

Q ss_pred             cccCCCCCCceEEcCCCc-EEEeccccce
Q 048314          139 ILHCDIKPQNILMDEFWT-AKISDFGLAK  166 (274)
Q Consensus       139 i~h~dl~~~nil~~~~~~-~kl~d~g~~~  166 (274)
                      +||+|+.+.||+++.+.. +.+.||+-+.
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEccccc
Confidence            899999999999998874 8999999764

>TIGR02721 ycfN_thiK thiamine kinase

Probab=84.28  E-value=0.85  Score=38.14  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=24.9

Q ss_pred             CcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++|+|+.+.|+++++++ +.++||..+..
T Consensus       147 ~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~  175 (256)
T TIGR02721       147 APLHMDVHAYNLVVTPQG-LKLIDWEYASD  175 (256)
T ss_pred             eeecCCCCcCcEEEeCCC-CEEEeccccCc
Confidence            589999999999998876 78999987643

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PTZ00384 choline kinase; Provisional

Probab=83.77  E-value=5.9  Score=35.52  Aligned_cols=28  Identities=29%  Similarity=0.176  Sum_probs=23.2

Q ss_pred             CcccCCCCCCceEEcCCCcEEEeccccce
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ...|.|+-+.||+..+ ..+.++||..+.
T Consensus       228 VfCHNDL~~gNIL~~~-~~l~lID~EYA~  255 (383)
T PTZ00384        228 LFCHNDLFFTNILDFN-QGIYFIDFDFAG  255 (383)
T ss_pred             eeeeccCCcccEEecC-CCEEEEEecccc
Confidence            6789999999998754 468999998764

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=83.48  E-value=3.6  Score=36.72  Aligned_cols=99  Identities=10%  Similarity=0.013  Sum_probs=63.2

Q ss_pred             HHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCC-HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 048314           62 TLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWD-LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPIL  140 (274)
Q Consensus        62 ~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs-L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~  140 (274)
                      .|++.|.+++...|..---...  ..-.|||+|+.+-. -.-.|   +.-.++...+..+-.+++.-+.-|-..|  +++
T Consensus       215 KE~RNLkRl~~aGIP~PePIlL--k~hVLVM~FlGrdgw~aPkL---Kd~~ls~~ka~~~Y~~~v~~MR~lY~~c--~LV  287 (520)
T KOG2270|consen  215 KEMRNLKRLNNAGIPCPEPILL--KNHVLVMEFLGRDGWAAPKL---KDASLSTSKARELYQQCVRIMRRLYQKC--RLV  287 (520)
T ss_pred             HHHHHHHHHHhcCCCCCCceee--ecceEeeeeccCCCCcCccc---ccccCChHHHHHHHHHHHHHHHHHHHHh--cee
Confidence            4677777765544321110001  13479999985421 11112   2334677777777788888777776666  999


Q ss_pred             cCCCCCCceEEcCCCcEEEeccccceec
Q 048314          141 HCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus       141 h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      |.||+--|+|+.. |.+.++|.+-+...
T Consensus       288 HADLSEfN~Lyhd-G~lyiIDVSQSVE~  314 (520)
T KOG2270|consen  288 HADLSEFNLLYHD-GKLYIIDVSQSVEH  314 (520)
T ss_pred             ccchhhhhheEEC-CEEEEEEccccccC
Confidence            9999999999865 57888888766443

>PRK10271 thiK thiamine kinase; Provisional

Probab=82.95  E-value=1.2  Score=35.61  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=24.9

Q ss_pred             CcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      ..+|+|+.|.|+++.+++ ++++|++.+..
T Consensus        78 ~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~  106 (188)
T PRK10271         78 APLHMDVHAGNLVHSASG-LRLIDWEYAGD  106 (188)
T ss_pred             eeecCCCCCccEEEECCC-EEEEeCCcccC
Confidence            578999999999998776 88999997643

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=81.34  E-value=1.1  Score=36.26  Aligned_cols=30  Identities=33%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             CcccCCCCCCceEE-cCCCcEEEecccccee
Q 048314          138 PILHCDIKPQNILM-DEFWTAKISDFGLAKL  167 (274)
Q Consensus       138 ~i~h~dl~~~nil~-~~~~~~kl~d~g~~~~  167 (274)
                      .+.|+|+.+.||++ ..++.++++||..+..
T Consensus       144 v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             eEeeccCccccEEeccCCCeEEEecHHHHhh
Confidence            68899999999999 8889999999987644

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=80.91  E-value=2.9  Score=36.07  Aligned_cols=31  Identities=19%  Similarity=0.281  Sum_probs=27.3

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .+++|+|+.+.|+++++++.+.++||..+..
T Consensus       196 ~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       196 TVLVHGKLSLSHFLYDETRGGYFINFEKASF  226 (309)
T ss_pred             eeeeCCCCcHHhEEEcCCCCEEEEEhhhccc
Confidence            4799999999999999988899999987644

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		8e-28
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		8e-28
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-17
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		3e-17
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-16
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-16
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		1e-16
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		3e-15
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		6e-14
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		9e-14
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		9e-10
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		3e-09
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		3e-09
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		4e-09
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		4e-09
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		4e-09
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		5e-09
4h58_A	275	Braf In Complex With Compound 3 Length = 275		5e-09
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		6e-09
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		6e-09
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		7e-09
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		9e-09
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		1e-08
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-08
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-08
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		2e-08
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-08
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-08
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		3e-08
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		4e-08
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		4e-08
3a7f_A	303	Human Mst3 Kinase Length = 303		4e-08
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		4e-08
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		7e-08
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		8e-08
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		2e-07
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		3e-07
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		3e-07
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		3e-07
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		3e-07
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		3e-07
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		3e-07
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		3e-07
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		3e-07
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		3e-07
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		3e-07
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		4e-07
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		4e-07
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		4e-07
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		4e-07
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		4e-07
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		4e-07
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		4e-07
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		4e-07
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		4e-07
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		4e-07
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		4e-07
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		4e-07
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		5e-07
2pl0_A	289	Lck Bound To Imatinib Length = 289		5e-07
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		5e-07
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		6e-07
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		6e-07
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		6e-07
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		6e-07
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		6e-07
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		6e-07
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		7e-07
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		7e-07
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		7e-07
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		7e-07
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		8e-07
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		8e-07
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		8e-07
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		9e-07
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		9e-07
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		9e-07
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		9e-07
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		9e-07
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		9e-07
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		9e-07
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		1e-06
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		1e-06
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		1e-06
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		1e-06
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		1e-06
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		1e-06
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		1e-06
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		2e-06
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-06
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		2e-06
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		2e-06
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		2e-06
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		2e-06
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		2e-06
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		2e-06
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-06
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		2e-06
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		2e-06
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		2e-06
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		2e-06
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		2e-06
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		2e-06
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		2e-06
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		2e-06
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		2e-06
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		2e-06
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		2e-06
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		2e-06
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		2e-06
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		2e-06
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		2e-06
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		2e-06
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-06
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-06
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		3e-06
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		3e-06
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		3e-06
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		3e-06
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		3e-06
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		3e-06
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		3e-06
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		4e-06
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		4e-06
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		4e-06
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		4e-06
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		4e-06
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		4e-06
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		4e-06
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		4e-06
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		4e-06
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		4e-06
1fvr_A	327	Tie2 Kinase Domain Length = 327		4e-06
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		4e-06
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		4e-06
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		4e-06
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		4e-06
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		4e-06
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		4e-06
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		5e-06
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		5e-06
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		5e-06
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		5e-06
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		5e-06
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		6e-06
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		6e-06
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		6e-06
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		6e-06
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		7e-06
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		7e-06
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		7e-06
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		7e-06
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		7e-06
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		8e-06
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		8e-06
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		8e-06
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		8e-06
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		8e-06
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		8e-06
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		8e-06
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		8e-06
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		8e-06
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		8e-06
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		8e-06
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		8e-06
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		9e-06
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		9e-06
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		9e-06
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		9e-06
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		9e-06
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		9e-06
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		9e-06
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		9e-06
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-05
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		1e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		1e-05
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		1e-05
3p1a_A	311	Structure Of Human Membrane-Associated Tyrosine- An		1e-05
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		1e-05
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-05
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-05
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		1e-05
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		1e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		1e-05
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		1e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		1e-05
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		1e-05
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		2e-05
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		2e-05
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-05
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		2e-05
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		2e-05
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		2e-05
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		2e-05
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		2e-05
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		2e-05
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		2e-05
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		2e-05
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		2e-05
3a4o_X	286	Lyn Kinase Domain Length = 286		2e-05
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		2e-05
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		2e-05
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		3e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		3e-05
3g51_A	325	Structural Diversity Of The Active Conformation Of		3e-05
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		3e-05
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		3e-05
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		3e-05
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		3e-05
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		3e-05
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		3e-05
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		3e-05
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-05
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		4e-05
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-05
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		4e-05
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		4e-05
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		4e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		4e-05
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		4e-05
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		4e-05
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		4e-05
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		4e-05
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		4e-05
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		4e-05
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		5e-05
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		5e-05
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		5e-05
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		5e-05
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		5e-05
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		5e-05
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		5e-05
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		5e-05
3enm_A	316	The Structure Of The Map2k Mek6 Reveals An Autoinhi		5e-05
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		5e-05
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		5e-05
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		5e-05
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		5e-05
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		6e-05
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		6e-05
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		6e-05
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		6e-05
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		6e-05
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		6e-05
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		6e-05
4fl3_A	635	Structural And Biophysical Characterization Of The		6e-05
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		6e-05
4fl2_A	636	Structural And Biophysical Characterization Of The		7e-05
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		7e-05
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		7e-05
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		7e-05
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		7e-05
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		8e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		8e-05
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		8e-05
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		9e-05
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		9e-05
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		9e-05
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		9e-05
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		9e-05
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		1e-04
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		1e-04
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		1e-04
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		1e-04
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		1e-04
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		1e-04
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		1e-04
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-04
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		1e-04
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		1e-04
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-04
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		1e-04
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		1e-04
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		1e-04
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		1e-04
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		1e-04
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		1e-04
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		1e-04
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		1e-04
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		1e-04
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		1e-04
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		1e-04
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		1e-04
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		1e-04
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		1e-04
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		1e-04
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		2e-04
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		2e-04
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		2e-04
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		2e-04
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		2e-04
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		2e-04
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		2e-04
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		2e-04
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		2e-04
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		2e-04
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		2e-04
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		2e-04
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		2e-04
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		2e-04
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		2e-04
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		2e-04
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		2e-04
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		2e-04
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		2e-04
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		2e-04
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		2e-04
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		2e-04
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		2e-04
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		2e-04
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		2e-04
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		2e-04
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		2e-04
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		2e-04
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		2e-04
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		2e-04
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		2e-04
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		2e-04
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		2e-04
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		2e-04
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		2e-04
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		2e-04
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		2e-04
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		2e-04
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		2e-04
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		2e-04
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		2e-04
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		2e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		2e-04
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-04
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		3e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		3e-04
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		3e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		3e-04
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		3e-04
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		3e-04
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		3e-04
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		3e-04
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		3e-04
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		3e-04
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		3e-04
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		3e-04
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		4e-04
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		4e-04
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		4e-04
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		4e-04
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		4e-04
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		4e-04
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		4e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		4e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		4e-04
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		4e-04
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-04
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		4e-04
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		4e-04
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		4e-04
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		4e-04
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		4e-04
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		4e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		4e-04
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		4e-04
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		5e-04
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		5e-04
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		5e-04
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		5e-04
3g0f_A	336	Kit Kinase Domain Mutant D816h In Complex With Suni		5e-04
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		5e-04
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		5e-04
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		6e-04
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		6e-04
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		6e-04
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		7e-04
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		7e-04
1t46_A	313	Structural Basis For The Autoinhibition And Sti-571		7e-04
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		7e-04
4fie_A	423	Full-Length Human Pak4 Length = 423		7e-04
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		7e-04
1t45_A	331	Structural Basis For The Autoinhibition And Sti-571		8e-04
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		8e-04
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		8e-04
1pkg_A	329	Structure Of A C-kit Kinase Product Complex Length		8e-04
3g0e_A	336	Kit Kinase Domain In Complex With Sunitinib Length		8e-04
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		8e-04
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		9e-04
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		9e-04
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		9e-04
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		9e-04
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		9e-04
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		9e-04
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		9e-04
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 99/178 (55%), Gaps = 18/178 (10%)
Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
           W +R RIAL  A+G+ YLHD C+P I+H D+K  NIL+DE + A + DFGLAKL+  K  
Sbjct: 138 WPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDX 197
Query: 172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEI-DASKPEEIILT 220
                     G +APE       S K DV+GYG++LLE I      ++   +  ++++L 
Sbjct: 198 HVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLL 257
Query: 221 NWVYKCFINRELNKLV----RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
           +WV      ++L  LV    +G   D++ +E L++V L C Q  P  RP M  VV ML
Sbjct: 258 DWVKGLLKEKKLEALVDVDLQGNYKDEE-VEQLIQVALLCTQSSPMERPKMSEVVRML 314

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 99/178 (55%), Gaps = 18/178 (10%)
Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
           W +R RIAL  A+G+ YLHD C+P I+H D+K  NIL+DE + A + DFGLAKL+  K  
Sbjct: 130 WPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDX 189
Query: 172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEI-DASKPEEIILT 220
                     G +APE       S K DV+GYG++LLE I      ++   +  ++++L 
Sbjct: 190 HVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLL 249
Query: 221 NWVYKCFINRELNKLV----RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
           +WV      ++L  LV    +G   D++ +E L++V L C Q  P  RP M  VV ML
Sbjct: 250 DWVKGLLKEKKLEALVDVDLQGNYKDEE-VEQLIQVALLCTQSSPMERPKMSEVVRML 306

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 22/175 (12%)
Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD--- 170
           W QR+ I +  A+G+ YLH      I+H D+K  NIL+DE +  KI+DFG++K  ++   
Sbjct: 138 WEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELGQ 194
Query: 171 -------KGCMA---PECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII-L 219
                  KG +    PE + +  ++ K+DVY +G+VL E +C      I  S P E++ L
Sbjct: 195 THLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCA--RSAIVQSLPREMVNL 252
Query: 220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVG---LWCVQDEPALRPSMKCVV 271
             W  +   N +L ++V     DK   E+L K G   + C+      RPSM  V+
Sbjct: 253 AEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVL 307

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 22/175 (12%)
Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD--- 170
           W QR+ I +  A+G+ YLH      I+H D+K  NIL+DE +  KI+DFG++K  ++   
Sbjct: 138 WEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELDQ 194
Query: 171 -------KGCMA---PECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII-L 219
                  KG +    PE + +  ++ K+DVY +G+VL E +C      I  S P E++ L
Sbjct: 195 THLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCA--RSAIVQSLPREMVNL 252
Query: 220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVG---LWCVQDEPALRPSMKCVV 271
             W  +   N +L ++V     DK   E+L K G   + C+      RPSM  V+
Sbjct: 253 AEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVL 307

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 33/182 (18%)
Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA-------- 165
           W+ R +IA   A GI +LH   E   +H DIK  NIL+DE +TAKISDFGLA        
Sbjct: 132 WHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 188
Query: 166 -----KLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                +++     MAPE   R  I+ K+D+Y +G+VLLE I       +D  +  +++L 
Sbjct: 189 TVMXSRIVGTTAYMAPEAL-RGEITPKSDIYSFGVVLLEIITGLP--AVDEHREPQLLLD 245
Query: 221 NWVYKC--------FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM 272
                         +I++++N      + D  ++E +  V   C+ ++   RP +K V  
Sbjct: 246 IKEEIEDEEKTIEDYIDKKMN------DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQ 299
Query: 273 ML 274
           +L
Sbjct: 300 LL 301

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 33/182 (18%)
Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA-------- 165
           W+ R +IA   A GI +LH   E   +H DIK  NIL+DE +TAKISDFGLA        
Sbjct: 132 WHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 188
Query: 166 -----KLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                +++     MAPE   R  I+ K+D+Y +G+VLLE I       +D  +  +++L 
Sbjct: 189 TVMXXRIVGTTAYMAPEAL-RGEITPKSDIYSFGVVLLEIITGLP--AVDEHREPQLLLD 245
Query: 221 NWVYKC--------FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM 272
                         +I++++N      + D  ++E +  V   C+ ++   RP +K V  
Sbjct: 246 IKEEIEDEEKTIEDYIDKKMN------DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQ 299
Query: 273 ML 274
           +L
Sbjct: 300 LL 301

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 33/182 (18%)
Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA-------- 165
           W+ R +IA   A GI +LH   E   +H DIK  NIL+DE +TAKISDFGLA        
Sbjct: 126 WHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 182
Query: 166 -----KLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                +++     MAPE   R  I+ K+D+Y +G+VLLE I       +D  +  +++L 
Sbjct: 183 XVMXXRIVGTTAYMAPEAL-RGEITPKSDIYSFGVVLLEIITGLP--AVDEHREPQLLLD 239
Query: 221 NWVYKC--------FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM 272
                         +I++++N      + D  ++E +  V   C+ ++   RP +K V  
Sbjct: 240 IKEEIEDEEKTIEDYIDKKMN------DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQ 293
Query: 273 ML 274
           +L
Sbjct: 294 LL 295

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 33/182 (18%)
Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA-------- 165
           W+ R +IA   A GI +LH   E   +H DIK  NIL+DE +TAKISDFGLA        
Sbjct: 123 WHXRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ 179
Query: 166 -----KLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                +++      APE   R  I+ K+D+Y +G+VLLE I       +D  +  +++L 
Sbjct: 180 XVXXSRIVGTTAYXAPEAL-RGEITPKSDIYSFGVVLLEIITGLP--AVDEHREPQLLLD 236
Query: 221 NWVYKC--------FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM 272
                         +I+++ N      + D  ++E    V   C+ ++   RP +K V  
Sbjct: 237 IKEEIEDEEKTIEDYIDKKXN------DADSTSVEAXYSVASQCLHEKKNKRPDIKKVQQ 290
Query: 273 ML 274
           +L
Sbjct: 291 LL 292

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 37/176 (21%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL-----LSD 170
           +R+ +A DVAKG+ YLH+   PPI+H ++K  N+L+D+ +T K+ DFGL++L     LS 
Sbjct: 138 RRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSS 196
Query: 171 KGC------MAPECYKRTPISVKADVYGYGIVLLETICC---WENMEIDASKPEEIILTN 221
           K        MAPE  +  P + K+DVY +G++L E       W N+      P +++   
Sbjct: 197 KSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL-----NPAQVVAAV 251
Query: 222 WVYKCF---INRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
             +KC    I R LN  V             +  G W   +EP  RPS   ++ +L
Sbjct: 252 G-FKCKRLEIPRNLNPQVAA-----------IIEGCWT--NEPWKRPSFATIMDLL 293

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 37/176 (21%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL-----LSD 170
           +R+ +A DVAKG+ YLH+   PPI+H D+K  N+L+D+ +T K+ DFGL++L     L  
Sbjct: 138 RRLSMAYDVAKGMNYLHNR-NPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXS 196
Query: 171 KGC------MAPECYKRTPISVKADVYGYGIVLLETICC---WENMEIDASKPEEIILTN 221
           K        MAPE  +  P + K+DVY +G++L E       W N+      P +++   
Sbjct: 197 KXAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL-----NPAQVVAAV 251
Query: 222 WVYKCF---INRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
             +KC    I R LN  V             +  G W   +EP  RPS   ++ +L
Sbjct: 252 G-FKCKRLEIPRNLNPQVAA-----------IIEGCWT--NEPWKRPSFATIMDLL 293

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 52/103 (50%), Gaps = 19/103 (18%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-KGC- 173
           Q + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA + S   G  
Sbjct: 133 QLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQ 189
Query: 174 -----------MAPECYK---RTPISVKADVYGYGIVLLETIC 202
                      MAPE  +     P S ++DVY YGIVL E + 
Sbjct: 190 QVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT 232

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-KGC--- 173
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA + S   G    
Sbjct: 134 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 190
Query: 174 ---------MAPECYK---RTPISVKADVYGYGIVLLETIC 202
                    MAPE  +   + P S ++DVY +GIVL E + 
Sbjct: 191 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 231

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-KGC--- 173
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA + S   G    
Sbjct: 135 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 191
Query: 174 ---------MAPECYK---RTPISVKADVYGYGIVLLETIC 202
                    MAPE  +   + P S ++DVY +GIVL E + 
Sbjct: 192 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 232

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-KGC--- 173
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA + S   G    
Sbjct: 109 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 165
Query: 174 ---------MAPECYK---RTPISVKADVYGYGIVLLETIC 202
                    MAPE  +   + P S ++DVY +GIVL E + 
Sbjct: 166 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 206

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-KGC--- 173
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA + S   G    
Sbjct: 112 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 168
Query: 174 ---------MAPECYK---RTPISVKADVYGYGIVLLETIC 202
                    MAPE  +   + P S ++DVY +GIVL E + 
Sbjct: 169 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 209

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-KGC--- 173
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA + S   G    
Sbjct: 112 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 168
Query: 174 ---------MAPECYK---RTPISVKADVYGYGIVLLETIC 202
                    MAPE  +   + P S ++DVY +GIVL E + 
Sbjct: 169 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 209

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-KGC--- 173
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA + S   G    
Sbjct: 107 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 163
Query: 174 ---------MAPECYK---RTPISVKADVYGYGIVLLETIC 202
                    MAPE  +   + P S ++DVY +GIVL E + 
Sbjct: 164 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 204

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-KGC--- 173
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA + S   G    
Sbjct: 107 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 163
Query: 174 ---------MAPECYK---RTPISVKADVYGYGIVLLETIC 202
                    MAPE  +   + P S ++DVY +GIVL E + 
Sbjct: 164 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 204

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA------------ 165
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA            
Sbjct: 127 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQF 183
Query: 166 -KLLSDKGCMAPECYK---RTPISVKADVYGYGIVLLETIC 202
            +L      MAPE  +   + P S ++DVY +GIVL E + 
Sbjct: 184 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 224

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA------------ 165
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA            
Sbjct: 135 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQF 191
Query: 166 -KLLSDKGCMAPECYK---RTPISVKADVYGYGIVLLETIC 202
            +L      MAPE  +   + P S ++DVY +GIVL E + 
Sbjct: 192 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 232

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA------------ 165
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA            
Sbjct: 107 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQF 163
Query: 166 -KLLSDKGCMAPECYK---RTPISVKADVYGYGIVLLETIC 202
            +L      MAPE  +   + P S ++DVY +GIVL E + 
Sbjct: 164 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 204

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-KGC--- 173
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA + S   G    
Sbjct: 111 IDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQF 167
Query: 174 ---------MAPECYK---RTPISVKADVYGYGIVLLETIC 202
                    MAPE  +     P S ++DVY +GIVL E + 
Sbjct: 168 EQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT 208

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 41/185 (22%)
Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           S +RNP     +   L VA+G+ YL    E   +H D+  +N ++DE +T K++DFGLA+
Sbjct: 116 SPQRNPTVKDLISFGLQVARGMEYL---AEQKFVHRDLAARNCMLDESFTVKVADFGLAR 172
Query: 167 LLSDKGCMAPECYK--RTPI-------------SVKADVYGYGIVLLETICCWENMEIDA 211
            + D+   + + ++  R P+             + K+DV+ +G++L      WE +   A
Sbjct: 173 DILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLL------WELLTRGA 226
Query: 212 SKPEEII---LTNWVYKCFINRELNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALRPS 266
                I    LT++            L +G  + +     ++L +V   C + +PA+RP+
Sbjct: 227 PPYRHIDPFDLTHF------------LAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPT 274
Query: 267 MKCVV 271
            + +V
Sbjct: 275 FRVLV 279

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA------------ 165
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA            
Sbjct: 123 IDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQF 179
Query: 166 -KLLSDKGCMAPECYK---RTPISVKADVYGYGIVLLETIC 202
            +L      MAPE  +     P S ++DVY +GIVL E + 
Sbjct: 180 EQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT 220

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 19/101 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA------------ 165
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA            
Sbjct: 123 IDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQF 179
Query: 166 -KLLSDKGCMAPECYK---RTPISVKADVYGYGIVLLETIC 202
            +L      MAPE  +     P S ++DVY +GIVL E + 
Sbjct: 180 EQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT 220

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 102 YIIFCSAERNPYWNQRVRIA--LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA-K 158
           Y +   AE  PY+     ++  L  ++G+ YLH      ++H D+KP N+L+    T  K
Sbjct: 88  YNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLK 147
Query: 159 ISDFGLA-----KLLSDKGC---MAPECYKRTPISVKADVYGYGIVLLETI 201
           I DFG A      + ++KG    MAPE ++ +  S K DV+ +GI+L E I
Sbjct: 148 ICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVI 198

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 102 YIIFCSAERNPYWNQRVRIA--LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA-K 158
           Y +   AE  PY+     ++  L  ++G+ YLH      ++H D+KP N+L+    T  K
Sbjct: 87  YNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLK 146
Query: 159 ISDFGLA-----KLLSDKGC---MAPECYKRTPISVKADVYGYGIVLLETI 201
           I DFG A      + ++KG    MAPE ++ +  S K DV+ +GI+L E I
Sbjct: 147 ICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVI 197

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 17/98 (17%)
Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW--------TAKISDFGLAK------ 166
           A+ +A+G+ YLHDE   PI+H D+K  NIL+ +            KI+DFGLA+      
Sbjct: 111 AVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTT 170
Query: 167 LLSDKGC---MAPECYKRTPISVKADVYGYGIVLLETI 201
            +S  G    MAPE  + +  S  +DV+ YG++L E +
Sbjct: 171 KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELL 208

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 28/113 (24%)
Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
           W+QRV  A D+A G+ YLH      I+H D+   N L+ E     ++DFGLA+L+ D+  
Sbjct: 107 WSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT 163
Query: 174 -------------------------MAPECYKRTPISVKADVYGYGIVLLETI 201
                                    MAPE         K DV+ +GIVL E I
Sbjct: 164 QPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEII 216

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q   I  ++ KG+ YLH E +   +H DIK  N+L+ E    K++DFG+A  L+D     
Sbjct: 125 QIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKR 181
Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLE 199
                    MAPE  K++    KAD++  GI  +E
Sbjct: 182 NTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE 216

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q   I  ++ KG+ YLH E +   +H DIK  N+L+ E    K++DFG+A  L+D     
Sbjct: 105 QIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKR 161
Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLE 199
                    MAPE  K++    KAD++  GI  +E
Sbjct: 162 NTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE 196

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q   I  ++ KG+ YLH E +   +H DIK  N+L+ E    K++DFG+A  L+D     
Sbjct: 120 QIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKR 176
Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLE 199
                    MAPE  K++    KAD++  GI  +E
Sbjct: 177 NXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE 211

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q   I  ++ KG+ YLH E +   +H DIK  N+L+ E    K++DFG+A  L+D     
Sbjct: 105 QIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKR 161
Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLE 199
                    MAPE  K++    KAD++  GI  +E
Sbjct: 162 NXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE 196

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           I  ++ KG+ YLH E +   +H DIK  N+L+ E    K++DFG+A  L+D         
Sbjct: 121 ILREILKGLDYLHSERK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNXFV 177
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLE 199
                MAPE  K++    KAD++  GI  +E
Sbjct: 178 GTPFWMAPEVIKQSAYDFKADIWSLGITAIE 208

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---------- 173
           +  GI + HD     I+H DIKPQNIL+D   T KI DFG+AK LS+             
Sbjct: 120 ILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTV 176
Query: 174 --MAPECYKRTPISVKADVYGYGIVLLETIC 202
              +PE  K        D+Y  GIVL E + 
Sbjct: 177 QYFSPEQAKGEATDECTDIYSIGIVLYEMLV 207

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 14/88 (15%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC--------- 173
           ++ KG+ YLH E +   +H DIK  N+L+ E    K++DFG+A  L+D            
Sbjct: 128 EILKGLDYLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTP 184
Query: 174 --MAPECYKRTPISVKADVYGYGIVLLE 199
             MAPE  +++    KAD++  GI  +E
Sbjct: 185 FWMAPEVIQQSAYDSKADIWSLGITAIE 212

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ YL        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 127 HNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 183
Query: 170 DKGC---------------MAPECYKRTPISVKADVYGYGIVLLE 199
           DK                 MA E  +    + K+DV+ +G++L E
Sbjct: 184 DKEXXSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 228

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 17/108 (15%)
Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-----AKISDFGLAK-- 166
           W+ ++R+ LD+A GI Y+ ++  PPI+H D++  NI +          AK++DFGL++  
Sbjct: 121 WSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQS 179
Query: 167 ------LLSDKGCMAPECY--KRTPISVKADVYGYGIVLLETICCWEN 206
                 LL +   MAPE    +    + KAD Y + ++L  TI   E 
Sbjct: 180 VHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILY-TILTGEG 226

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ YL        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 147 HNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 203
Query: 170 DK---------GC------MAPECYKRTPISVKADVYGYGIVLLE 199
           DK         G       MA E  +    + K+DV+ +G++L E
Sbjct: 204 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 248

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ YL        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 128 HNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 184
Query: 170 DK---------GC------MAPECYKRTPISVKADVYGYGIVLLE 199
           DK         G       MA E  +    + K+DV+ +G++L E
Sbjct: 185 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 229

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ YL        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 127 HNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 183
Query: 170 DK---------GC------MAPECYKRTPISVKADVYGYGIVLLE 199
           DK         G       MA E  +    + K+DV+ +G++L E
Sbjct: 184 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 228

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ YL        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 128 HNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 184
Query: 170 DK---------GC------MAPECYKRTPISVKADVYGYGIVLLE 199
           DK         G       MA E  +    + K+DV+ +G++L E
Sbjct: 185 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 229

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ YL        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 146 HNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 202
Query: 170 DK---------GC------MAPECYKRTPISVKADVYGYGIVLLETI 201
           DK         G       MA E  +    + K+DV+ +G++L E +
Sbjct: 203 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 249

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ YL        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 126 HNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 182
Query: 170 DK---------GC------MAPECYKRTPISVKADVYGYGIVLLETI 201
           DK         G       MA E  +    + K+DV+ +G++L E +
Sbjct: 183 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 229

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ YL        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 120 HNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 176
Query: 170 DK---------GC------MAPECYKRTPISVKADVYGYGIVLLETI 201
           DK         G       MA E  +    + K+DV+ +G++L E +
Sbjct: 177 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 223

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ YL        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 125 HNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 181
Query: 170 DK---------GC------MAPECYKRTPISVKADVYGYGIVLLETI 201
           DK         G       MA E  +    + K+DV+ +G++L E +
Sbjct: 182 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 228

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ YL        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 123 HNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 179
Query: 170 DKGC---------------MAPECYKRTPISVKADVYGYGIVLLETI 201
           DK                 MA E  +    + K+DV+ +G++L E +
Sbjct: 180 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 226

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++    E   +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 109 NKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXT 165
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++    E   +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 110 NKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXT 166
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 167 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 206

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           ++++ V +G+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 118 KVSIAVLRGLAYLREKHQ--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 175
Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  MAPE  + T  SV++D++  G+ L+E
Sbjct: 176 TRSYMAPERLQGTHYSVQSDIWSMGLSLVE 205

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++    E   +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 115 NKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 171
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 172 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 211

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++    E   +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 114 NKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 170
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 171 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 210

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++    E   +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 109 NKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 165
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++    E   +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 104 NKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 160
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 161 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 200

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++    E   +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 111 NKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXT 167
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 168 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 207

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++ +      +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 115 NKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXT 171
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 172 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 211

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++ +      +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 117 NKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXT 173
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 174 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 213

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++ +      +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 109 NKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXT 165
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++ +      +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 118 NKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXT 174
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 175 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 214

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++ +      +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 119 NKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 175
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 176 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 215

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++ +      +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 109 NKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXT 165
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKISDFGLAK----- 166
           N  +R+   + +G+ YLH   +  I+H D+KPQNIL+   +     KI DFG+++     
Sbjct: 131 NDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA 187
Query: 167 -----LLSDKGCMAPECYKRTPISVKADVYGYGIV 196
                ++     +APE     PI+   D++  GI+
Sbjct: 188 CELREIMGTPEYLAPEILNYDPITTATDMWNIGII 222

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 27/112 (24%)
Query: 114 WNQRVRIALDVAKGILYLH-------DECEPPILHCDIKPQNILMDEFWTAKISDFGLA- 165
           WN+   IA  +A+G+ YLH       D  +P I H DIK +N+L+    TA I+DFGLA 
Sbjct: 120 WNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLAL 179
Query: 166 KLLSDKGC------------MAPEC------YKRTPISVKADVYGYGIVLLE 199
           K  + K              MAPE       ++R    ++ D+Y  G+VL E
Sbjct: 180 KFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAF-LRIDMYAMGLVLWE 230

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ +L        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 128 HNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 184
Query: 170 DKGC---------------MAPECYKRTPISVKADVYGYGIVLLE 199
           DK                 MA E  +    + K+DV+ +G++L E
Sbjct: 185 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 229

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 170 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 227
Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  M+PE  + T  SV++D++  G+ L+E
Sbjct: 228 TRSYMSPERLQGTHYSVQSDIWSMGLSLVE 257

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ +L        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 129 HNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 185
Query: 170 DKGC---------------MAPECYKRTPISVKADVYGYGIVLLE 199
           DK                 MA E  +    + K+DV+ +G++L E
Sbjct: 186 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 230

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ +L        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 126 HNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 182
Query: 170 DKGC---------------MAPECYKRTPISVKADVYGYGIVLLE 199
           DK                 MA E  +    + K+DV+ +G++L E
Sbjct: 183 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 227

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 36/187 (19%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 351 FLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 407
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E       +   
Sbjct: 408 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE-------LTTK 460
Query: 211 ASKPEEIILTNWVYKCFINRE-LNKLVRGTEV--DKKNLENLVKVGLWCVQDEPALRPSM 267
              P         Y   +NRE L+++ RG  +    +  E+L  +   C + EP  RP+ 
Sbjct: 461 GRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTF 511
Query: 268 KCVVMML 274
           + +   L
Sbjct: 512 EYLQAFL 518

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ +L        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 128 HNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 184
Query: 170 DKGC---------------MAPECYKRTPISVKADVYGYGIVLLE 199
           DK                 MA E  +    + K+DV+ +G++L E
Sbjct: 185 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 229

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ +L        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 133 HNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 189
Query: 170 DKGC---------------MAPECYKRTPISVKADVYGYGIVLLE 199
           DK                 MA E  +    + K+DV+ +G++L E
Sbjct: 190 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 234

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 127 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 184
Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  M+PE  + T  SV++D++  G+ L+E
Sbjct: 185 TRSYMSPERLQGTHYSVQSDIWSMGLSLVE 214

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ +L        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 187 HNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 243
Query: 170 DKGC---------------MAPECYKRTPISVKADVYGYGIVLLE 199
           DK                 MA E  +    + K+DV+ +G++L E
Sbjct: 244 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 288

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 108 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 165
Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  M+PE  + T  SV++D++  G+ L+E
Sbjct: 166 TRSYMSPERLQGTHYSVQSDIWSMGLSLVE 195

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
            NP     +   L VAKG+ +L        +H D+  +N ++DE +T K++DFGLA+ + 
Sbjct: 129 HNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDML 185
Query: 170 DKGC---------------MAPECYKRTPISVKADVYGYGIVLLE 199
           DK                 MA E  +    + K+DV+ +G++L E
Sbjct: 186 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 230

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 36/187 (19%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 268 FLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADF 324
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E       +   
Sbjct: 325 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE-------LTTK 377
Query: 211 ASKPEEIILTNWVYKCFINRE-LNKLVRGTEV--DKKNLENLVKVGLWCVQDEPALRPSM 267
              P         Y   +NRE L+++ RG  +    +  E+L  +   C + EP  RP+ 
Sbjct: 378 GRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTF 428
Query: 268 KCVVMML 274
           + +   L
Sbjct: 429 EYLQAFL 435

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 36/187 (19%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 268 FLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADF 324
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E       +   
Sbjct: 325 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE-------LTTK 377
Query: 211 ASKPEEIILTNWVYKCFINRE-LNKLVRGTEV--DKKNLENLVKVGLWCVQDEPALRPSM 267
              P         Y   +NRE L+++ RG  +    +  E+L  +   C + EP  RP+ 
Sbjct: 378 GRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTF 428
Query: 268 KCVVMML 274
           + +   L
Sbjct: 429 EYLQAFL 435

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 111 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDEMANEFVG 168
Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  M+PE  + T  SV++D++  G+ L+E
Sbjct: 169 TRSYMSPERLQGTHYSVQSDIWSMGLSLVE 198

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 108 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 165
Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  M+PE  + T  SV++D++  G+ L+E
Sbjct: 166 TRSYMSPERLQGTHYSVQSDIWSMGLSLVE 195

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 36/187 (19%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 268 FLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADF 324
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E       +   
Sbjct: 325 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE-------LTTK 377
Query: 211 ASKPEEIILTNWVYKCFINRE-LNKLVRGTEV--DKKNLENLVKVGLWCVQDEPALRPSM 267
              P         Y   +NRE L+++ RG  +    +  E+L  +   C + EP  RP+ 
Sbjct: 378 GRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTF 428
Query: 268 KCVVMML 274
           + +   L
Sbjct: 429 EYLQAFL 435

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 135 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 192
Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  M+PE  + T  SV++D++  G+ L+E
Sbjct: 193 TRSYMSPERLQGTHYSVQSDIWSMGLSLVE 222

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 108 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 165
Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  M+PE  + T  SV++D++  G+ L+E
Sbjct: 166 TRSYMSPERLQGTHYSVQSDIWSMGLSLVE 195

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 108 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 165
Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  M+PE  + T  SV++D++  G+ L+E
Sbjct: 166 TRSYMSPERLQGTHYSVQSDIWSMGLSLVE 195

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-------- 170
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D        
Sbjct: 108 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 165
Query: 171 -KGCMAPECYKRTPISVKADVYGYGIVLLE 199
            +  M+PE  + T  SV++D++  G+ L+E
Sbjct: 166 TRSYMSPERLQGTHYSVQSDIWSMGLSLVE 195

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 16/95 (16%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK------- 171
           +IA+ + K + +LH +    ++H D+KP N+L++     K+ DFG++  L D        
Sbjct: 157 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTIDA 214
Query: 172 GC---MAPEC----YKRTPISVKADVYGYGIVLLE 199
           GC   MAPE       +   SVK+D++  GI ++E
Sbjct: 215 GCKPYMAPERINPELNQKGYSVKSDIWSLGITMIE 249

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 17/108 (15%)
Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-----AKISDFG----- 163
           W+ ++R+ LD+A GI Y+ ++  PPI+H D++  NI +          AK++DFG     
Sbjct: 121 WSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQQS 179
Query: 164 ---LAKLLSDKGCMAPECY--KRTPISVKADVYGYGIVLLETICCWEN 206
              ++ LL +   MAPE    +    + KAD Y + ++L  TI   E 
Sbjct: 180 VHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILY-TILTGEG 226

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 165
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 165 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 98  WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 157
           +DL +    + +R+ YW    R+   + + + Y+H +    I+H D+KP NI +DE    
Sbjct: 103 YDLIHSENLNQQRDEYW----RLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNV 155
Query: 158 KISDFGLAK 166
           KI DFGLAK
Sbjct: 156 KIGDFGLAK 164

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 36/187 (19%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 92  FLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 148
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E       +   
Sbjct: 149 GLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE-------LTTK 201
Query: 211 ASKPEEIILTNWVYKCFINRE-LNKLVRGTEV--DKKNLENLVKVGLWCVQDEPALRPSM 267
              P         Y   +NRE L+++ RG  +    +  E+L  +   C + EP  RP+ 
Sbjct: 202 GRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTF 252
Query: 268 KCVVMML 274
           + +   L
Sbjct: 253 EYLQAFL 259

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 165 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 98  WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 157
           +DL +    + +R+ YW    R+   + + + Y+H +    I+H D+KP NI +DE    
Sbjct: 103 YDLIHSENLNQQRDEYW----RLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNV 155
Query: 158 KISDFGLAK 166
           KI DFGLAK
Sbjct: 156 KIGDFGLAK 164

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 165 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++    E   +H +++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 105 NKLLDMAAQIAEGMAFIE---ERNYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYT 161
Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
             +G        APE       ++K+DV+ +GI+L E + 
Sbjct: 162 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 201

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 14/92 (15%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK----------- 171
           ++A G+ +LH      I++ D+KP+NIL+DE    K++DFGL+K   D            
Sbjct: 138 ELALGLDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTV 194
Query: 172 GCMAPECYKRTPISVKADVYGYGIVLLETICC 203
             MAPE   R   S  AD + YG+++ E +  
Sbjct: 195 EYMAPEVVNRQGHSHSADWWSYGVLMFEMLTG 226

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 165 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 36/187 (19%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 95  FLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 151
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E       +   
Sbjct: 152 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE-------LTTK 204
Query: 211 ASKPEEIILTNWVYKCFINRE-LNKLVRGTEV--DKKNLENLVKVGLWCVQDEPALRPSM 267
              P         Y   +NRE L+++ RG  +    +  E+L  +   C + EP  RP+ 
Sbjct: 205 GRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTF 255
Query: 268 KCVVMML 274
           + +   L
Sbjct: 256 EYLQAFL 262

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 107 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 163
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 164 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 196

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 165
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 165
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---DKGCM 174
           ++ +LDV + + YL        +H D+  +N+L+ E   AK+SDFGL K  S   D G +
Sbjct: 111 LKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL 167
Query: 175 -----APECYKRTPISVKADVYGYGIVLLE 199
                APE  +    S K+DV+ +GI+L E
Sbjct: 168 PVKWTAPEALREAAFSTKSDVWSFGILLWE 197

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 165
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 99  DLAYIIFCSAERNPYWNQ--RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 156
           D+ Y I+   E NP + +   +     +  G+ +LH      I++ D+KP+N+L+D+   
Sbjct: 271 DIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLDDDGN 327
Query: 157 AKISDFGLAKLL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICC 203
            +ISD GLA  L              G MAPE           D +  G+ L E I  
Sbjct: 328 VRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAA 385

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 99  DLAYIIFCSAERNPYWNQ--RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 156
           D+ Y I+   E NP + +   +     +  G+ +LH      I++ D+KP+N+L+D+   
Sbjct: 271 DIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLDDDGN 327
Query: 157 AKISDFGLAKLL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICC 203
            +ISD GLA  L              G MAPE           D +  G+ L E I  
Sbjct: 328 VRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAA 385

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 99  DLAYIIFCSAERNPYWNQ--RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 156
           D+ Y I+   E NP + +   +     +  G+ +LH      I++ D+KP+N+L+D+   
Sbjct: 271 DIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLDDDGN 327
Query: 157 AKISDFGLAKLL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICC 203
            +ISD GLA  L              G MAPE           D +  G+ L E I  
Sbjct: 328 VRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAA 385

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 165
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 165 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 165
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 165
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 165 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 165 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 17/108 (15%)
Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-----AKISDFGLAK-- 166
           W+ ++R+ LD+A GI Y+ ++  PPI+H D++  NI +          AK++DF L++  
Sbjct: 121 WSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLSQQS 179
Query: 167 ------LLSDKGCMAPECY--KRTPISVKADVYGYGIVLLETICCWEN 206
                 LL +   MAPE    +    + KAD Y + ++L  TI   E 
Sbjct: 180 VHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILY-TILTGEG 226

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL--------LSD 170
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +        L +
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 171 KGC-----MAPECYKRTPISVK-ADVYGYGIVL 197
           K C     +APE  KR     +  DV+  GIVL
Sbjct: 165 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 16/95 (16%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK------- 171
           +IA+ + K + +LH +    ++H D+KP N+L++     K+ DFG++  L D        
Sbjct: 113 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDA 170
Query: 172 GC---MAPEC----YKRTPISVKADVYGYGIVLLE 199
           GC   MAPE       +   SVK+D++  GI ++E
Sbjct: 171 GCKPYMAPERINPELNQKGYSVKSDIWSLGITMIE 205

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---DKGCM 174
           ++ +LDV + + YL        +H D+  +N+L+ E   AK+SDFGL K  S   D G +
Sbjct: 292 LKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL 348
Query: 175 -----APECYKRTPISVKADVYGYGIVLLE 199
                APE  +    S K+DV+ +GI+L E
Sbjct: 349 PVKWTAPEALREKKFSTKSDVWSFGILLWE 378

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---DKGCM 174
           ++ +LDV + + YL        +H D+  +N+L+ E   AK+SDFGL K  S   D G +
Sbjct: 120 LKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL 176
Query: 175 -----APECYKRTPISVKADVYGYGIVLLE 199
                APE  +    S K+DV+ +GI+L E
Sbjct: 177 PVKWTAPEALREKKFSTKSDVWSFGILLWE 206

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 16/118 (13%)
Query: 99  DLAYIIFCSAERNPYWNQ--RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 156
           D+ Y I+   E NP + +   +     +  G+ +LH   +  I++ D+KP+N+L+D+   
Sbjct: 271 DIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGN 327
Query: 157 AKISDFGLAKLL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICC 203
            +ISD GLA  L              G MAPE           D +  G+ L E I  
Sbjct: 328 VRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAA 385

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---DKGCM 174
           ++ +LDV + + YL        +H D+  +N+L+ E   AK+SDFGL K  S   D G +
Sbjct: 105 LKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL 161
Query: 175 -----APECYKRTPISVKADVYGYGIVLLE 199
                APE  +    S K+DV+ +GI+L E
Sbjct: 162 PVKWTAPEALREKKFSTKSDVWSFGILLWE 191

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAP 176
           +G+ +LH  C   I+H D+KP+NIL+    T K++DFGLA++ S +  +AP
Sbjct: 123 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALAP 170

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM---- 174
           R+   +  G+ Y H      ++H D+KP+N+L+D    AKI+DFGL+ ++SD   +    
Sbjct: 120 RLFQQILSGVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRXSC 176
Query: 175 ------APECYK-RTPISVKADVYGYGIVLLETIC 202
                 APE    R     + D++  G++L   +C
Sbjct: 177 GSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLC 211

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 35/179 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD- 170
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ + + + 
Sbjct: 127 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXET 183
Query: 171 -------KGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      MAPE  K    +  +D++ +G+VL      WE   + A +P    
Sbjct: 184 DXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVL------WEITSL-AEQP---- 232
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP+   +V +L
Sbjct: 233 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 286

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 35/179 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD- 170
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ + + + 
Sbjct: 124 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXET 180
Query: 171 -------KGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      MAPE  K    +  +D++ +G+VL      WE   + A +P    
Sbjct: 181 DXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVL------WEITSL-AEQP---- 229
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP+   +V +L
Sbjct: 230 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 283

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 91  FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 147
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLE 199
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E
Sbjct: 148 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 196

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 102 FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 158
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLE 199
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E
Sbjct: 159 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 102 FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 158
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLE 199
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E
Sbjct: 159 GLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 102 FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 158
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLE 199
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E
Sbjct: 159 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD--------KG 172
           A +V   + YLH +    I++ D+KP+NIL+D+    KI+DFG AK + D          
Sbjct: 112 AAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYXLCGTPD 168
Query: 173 CMAPECYKRTPISVKADVYGYGIVLLETICCW 204
            +APE     P +   D + +GI++ E +  +
Sbjct: 169 YIAPEVVSTKPYNKSIDWWSFGILIYEMLAGY 200

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 36/187 (19%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V ++  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 99  FLKGETGKYLRLPQLVDMSAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 155
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E       +   
Sbjct: 156 GLARLIEDNEWTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE-------LTTK 208
Query: 211 ASKPEEIILTNWVYKCFINRE-LNKLVRGTEV--DKKNLENLVKVGLWCVQDEPALRPSM 267
              P         Y   +NRE L+++ RG  +    +  E+L  +   C + EP  RP+ 
Sbjct: 209 GRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTF 259
Query: 268 KCVVMML 274
           + +   L
Sbjct: 260 EYLQAFL 266

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA------------- 165
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA             
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 166 KLLSDKGCMAPECYKRTPISVK-ADVYGYGIVL 197
           K+      +APE  KR     +  DV+  GIVL
Sbjct: 165 KMXGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA------------- 165
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA             
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 166 KLLSDKGCMAPECYKRTPISVK-ADVYGYGIVL 197
           K+      +APE  KR     +  DV+  GIVL
Sbjct: 165 KMXGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 102 FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 158
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLE 199
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E
Sbjct: 159 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA------------- 165
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA             
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 166 KLLSDKGCMAPECYKRTPISVK-ADVYGYGIVL 197
           K+      +APE  KR     +  DV+  GIVL
Sbjct: 165 KMXGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 93  FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 149
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLE 199
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E
Sbjct: 150 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 198

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 102 FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 158
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLE 199
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E
Sbjct: 159 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 102 FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 158
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLE 199
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E
Sbjct: 159 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA------------- 165
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA             
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 165
Query: 166 KLLSDKGCMAPECYKRTPISVK-ADVYGYGIVL 197
           K+      +APE  KR     +  DV+  GIVL
Sbjct: 166 KMXGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 96  LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 155
           L  D A+ I  S        Q +  A DVA+G+ YL    +   +H D+  +NIL+ E +
Sbjct: 123 LETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENY 179
Query: 156 TAKISDFGLAK---LLSDKGC-------MAPECYKRTPISVKADVYGYGIVLLETI 201
            AKI+DFGL++   +   K         MA E    +  +  +DV+ YG++L E +
Sbjct: 180 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 235

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 102 FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 158
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLE 199
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E
Sbjct: 159 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 36/187 (19%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V ++  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 99  FLKGETGKYLRLPQLVDMSAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADF 155
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E       +   
Sbjct: 156 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE-------LTTK 208
Query: 211 ASKPEEIILTNWVYKCFINRE-LNKLVRGTEV--DKKNLENLVKVGLWCVQDEPALRPSM 267
              P         Y   +NRE L+++ RG  +    +  E+L  +   C + EP  RP+ 
Sbjct: 209 GRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTF 259
Query: 268 KCVVMML 274
           + +   L
Sbjct: 260 EYLQAFL 266

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 35/179 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD- 170
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ + + + 
Sbjct: 127 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXET 183
Query: 171 -------KGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      MAPE  K    +  +D++ +G+VL      WE   + A +P    
Sbjct: 184 DXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVL------WEITSL-AEQP---- 232
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP+   +V +L
Sbjct: 233 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLEIVNLL 286

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA------------- 165
           R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA             
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 166 KLLSDKGCMAPECYKRTPISVK-ADVYGYGIVL 197
           K+      +APE  KR     +  DV+  GIVL
Sbjct: 165 KMXGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--------------CMAPECYKRTPI 184
           I+H D+KP NIL+      K+ DFG+A+ ++D G               ++PE  +   +
Sbjct: 137 IIHRDVKPANILISATNAVKVVDFGIARAIADSGNSVXQTAAVIGTAQYLSPEQARGDSV 196
Query: 185 SVKADVYGYGIVLLETIC 202
             ++DVY  G VL E + 
Sbjct: 197 DARSDVYSLGCVLYEVLT 214

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 35/176 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD- 170
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + + + 
Sbjct: 120 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXET 176
Query: 171 -------KGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 177 DXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 225
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVV 271
                Y+   N ++ + V  G  +DK +   + L+++   C Q  P +RPS   ++
Sbjct: 226 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLLELMRMCWQYNPKMRPSFLEII 276

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 96  LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 155
           L  D A+ I  S        Q +  A DVA+G+ YL    +   +H D+  +NIL+ E +
Sbjct: 113 LETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENY 169
Query: 156 TAKISDFGLAK---LLSDKGC-------MAPECYKRTPISVKADVYGYGIVLLETI 201
            AKI+DFGL++   +   K         MA E    +  +  +DV+ YG++L E +
Sbjct: 170 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 225

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 35/179 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ + +   
Sbjct: 127 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET 183
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      MAPE  K    +  +D++ +G+VL      WE   + A +P    
Sbjct: 184 AYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVL------WEITSL-AEQP---- 232
Query: 219 LTNWVYKCFINRELNKLVR-GTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP+   +V +L
Sbjct: 233 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 286

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 35/179 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ + +   
Sbjct: 127 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET 183
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      MAPE  K    +  +D++ +G+VL      WE   + A +P    
Sbjct: 184 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVL------WEITSL-AEQP---- 232
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP+   +V +L
Sbjct: 233 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 286

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 35/176 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD- 170
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + + + 
Sbjct: 129 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXET 185
Query: 171 -------KGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 186 DXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 234
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVV 271
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RPS   ++
Sbjct: 235 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 285

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E    K++DF
Sbjct: 269 FLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADF 325
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLE 199
           GL +L+ D      +G        APE       ++K+DV+ +GI+L E
Sbjct: 326 GLGRLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 374

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 24/112 (21%)
Query: 101 AYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTA 157
           A  ++  A  + Y  Q       + + + Y HD     I+H D+KP+N+L+   +     
Sbjct: 123 AGFVYSEAVASHYMRQ-------ILEALRYCHDNN---IIHRDVKPENVLLASKENSAPV 172
Query: 158 KISDFGLAKLLSDKGC-----------MAPECYKRTPISVKADVYGYGIVLL 198
           K+ DFG+A  L + G            MAPE  KR P     DV+G G++L 
Sbjct: 173 KLGDFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILF 224

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 98  WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 157
           +DL +    + +R+ YW    R+   + + + Y+H +    I+H ++KP NI +DE    
Sbjct: 103 YDLIHSENLNQQRDEYW----RLFRQILEALSYIHSQG---IIHRNLKPXNIFIDESRNV 155
Query: 158 KISDFGLAK 166
           KI DFGLAK
Sbjct: 156 KIGDFGLAK 164

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 35/179 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ + +   
Sbjct: 126 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET 182
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      MAPE  K    +  +D++ +G+VL      WE   + A +P    
Sbjct: 183 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVL------WEITSL-AEQP---- 231
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP+   +V +L
Sbjct: 232 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 285

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 32/171 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           +  +  +A+G+ ++        +H D++  NIL+      KI+DFGLA+++ D      +
Sbjct: 287 IDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTARE 343
Query: 172 GC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK 225
           G        APE       ++K+DV+ +GI+L+E +          S PE I        
Sbjct: 344 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVI-------- 395
Query: 226 CFINRELNKLVRGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
                    L RG  + +     E L  + + C ++ P  RP+ + +  +L
Sbjct: 396 -------RALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVL 439

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--------------CMAPECYKRTPI 184
           I+H D+KP NI++      K+ DFG+A+ ++D G               ++PE  +   +
Sbjct: 137 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSV 196
Query: 185 SVKADVYGYGIVLLETIC 202
             ++DVY  G VL E + 
Sbjct: 197 DARSDVYSLGCVLYEVLT 214

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 32/171 (18%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           +  +  +A+G+ ++        +H D++  NIL+      KI+DFGLA+++ D      +
Sbjct: 114 IDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTARE 170
Query: 172 GC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK 225
           G        APE       ++K+DV+ +GI+L+E +          S PE I        
Sbjct: 171 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVI-------- 222
Query: 226 CFINRELNKLVRGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
                    L RG  + +     E L  + + C ++ P  RP+ + +  +L
Sbjct: 223 -------RALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVL 266

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--------------CMAPECYKRTPI 184
           I+H D+KP NI++      K+ DFG+A+ ++D G               ++PE  +   +
Sbjct: 137 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSV 196
Query: 185 SVKADVYGYGIVLLETIC 202
             ++DVY  G VL E + 
Sbjct: 197 DARSDVYSLGCVLYEVLT 214

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + +   
Sbjct: 128 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 184
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 185 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 233
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVV 271
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RPS   ++
Sbjct: 234 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 284

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--------------CMAPECYKRTPI 184
           I+H D+KP NI++      K+ DFG+A+ ++D G               ++PE  +   +
Sbjct: 137 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSV 196
Query: 185 SVKADVYGYGIVLLETIC 202
             ++DVY  G VL E + 
Sbjct: 197 DARSDVYSLGCVLYEVLT 214

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--------------CMAPECYKRTPI 184
           I+H D+KP NI++      K+ DFG+A+ ++D G               ++PE  +   +
Sbjct: 137 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSV 196
Query: 185 SVKADVYGYGIVLLETIC 202
             ++DVY  G VL E + 
Sbjct: 197 DARSDVYSLGCVLYEVLT 214

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + +   
Sbjct: 128 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 184
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 185 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 233
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVV 271
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RPS   ++
Sbjct: 234 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 284

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + +   
Sbjct: 129 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 185
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 186 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 234
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVV 271
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RPS   ++
Sbjct: 235 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 285

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + +   
Sbjct: 135 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 191
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 192 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 240
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVV 271
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RPS   ++
Sbjct: 241 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 291

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 105 FCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF 162
           F   E   Y    Q V +A  +A G+ Y+        +H D+   NIL+ E    K++DF
Sbjct: 102 FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLAAANILVGENLVCKVADF 158
Query: 163 GLAKLLSD------KGC------MAPECYKRTPISVKADVYGYGIVLLE 199
           GLA+L+ D      +G        APE       ++K+DV+ +GI+L E
Sbjct: 159 GLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + +   
Sbjct: 126 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 182
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 183 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 231
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVV 271
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RPS   ++
Sbjct: 232 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 282

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 35/176 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD- 170
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + + + 
Sbjct: 135 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 191
Query: 171 -------KGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 192 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 240
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVV 271
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RPS   ++
Sbjct: 241 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 291

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + +   
Sbjct: 122 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 178
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 179 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 227
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVV 271
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RPS   ++
Sbjct: 228 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 278

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-------SDK 171
           +I L   K + +L +  +  I+H DIKP NIL+D     K+ DFG++  L        D 
Sbjct: 129 KITLATVKALNHLKENLK--IIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDA 186
Query: 172 GC---MAPE----CYKRTPISVKADVYGYGIVLLE 199
           GC   MAPE       R    V++DV+  GI L E
Sbjct: 187 GCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYE 221

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + +   
Sbjct: 125 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 181
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 182 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 230
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVV 271
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RPS   ++
Sbjct: 231 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 281

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 99  DLAYIIFCSAERNPYWNQ----RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 154
           DLA +I    +   Y ++    RV   L +A    +   +    +LH D+KP N+ +D  
Sbjct: 93  DLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGK 152
Query: 155 WTAKISDFGLAKLLSDKGC-----------MAPECYKRTPISVKADVYGYGIVLLE 199
              K+ DFGLA++L+               M+PE   R   + K+D++  G +L E
Sbjct: 153 QNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYE 208

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAP 176
           +G+ +LH  C   I+H D+KP+NIL+    T K++DFGLA++ S +  + P
Sbjct: 131 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTP 178

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + +   
Sbjct: 157 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 213
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 214 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 262
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVV 271
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RPS   ++
Sbjct: 263 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 313

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNIL---MDEFWTAKISDFGLAKL------LS 169
           R+   V   + YLHD     I+H D+KP+N+L   +DE     ISDFGL+K+      LS
Sbjct: 120 RLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLS 176
Query: 170 DK----GCMAPECYKRTPISVKADVYGYGIVLLETICCWENM--EIDASKPEEIILTNWV 223
                 G +APE   + P S   D +  G++    +C +     E DA   E+I+   + 
Sbjct: 177 TACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYE 236
Query: 224 Y 224
           +
Sbjct: 237 F 237

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--------------CMAPECYKRTPI 184
           I+H D+KP NI++      K+ DFG+A+ ++D G               ++PE  +   +
Sbjct: 154 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSV 213
Query: 185 SVKADVYGYGIVLLETIC 202
             ++DVY  G VL E + 
Sbjct: 214 DARSDVYSLGCVLYEVLT 231

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNIL---MDEFWTAKISDFGLAKL------LS 169
           R+   V   + YLHD     I+H D+KP+N+L   +DE     ISDFGL+K+      LS
Sbjct: 120 RLIFQVLDAVKYLHDLG---IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLS 176
Query: 170 DK----GCMAPECYKRTPISVKADVYGYGIVLLETICCWENM--EIDASKPEEIILTNWV 223
                 G +APE   + P S   D +  G++    +C +     E DA   E+I+   + 
Sbjct: 177 TACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYE 236
Query: 224 Y 224
           +
Sbjct: 237 F 237

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 99  DLAYIIFCSAERNPYWNQ----RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 154
           DLA +I    +   Y ++    RV   L +A    +   +    +LH D+KP N+ +D  
Sbjct: 93  DLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGK 152
Query: 155 WTAKISDFGLAKLLSDKGC-----------MAPECYKRTPISVKADVYGYGIVLLE 199
              K+ DFGLA++L+               M+PE   R   + K+D++  G +L E
Sbjct: 153 QNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYE 208

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM------- 174
           LDV +G+ YL + C   ++H D+  +N L+ E    K+SDFG+ + + D           
Sbjct: 111 LDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 167
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETI 201
                +PE +  +  S K+DV+ +G+++ E  
Sbjct: 168 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 199

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM------- 174
           LDV +G+ YL + C   ++H D+  +N L+ E    K+SDFG+ + + D           
Sbjct: 113 LDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 169
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETI 201
                +PE +  +  S K+DV+ +G+++ E  
Sbjct: 170 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 201

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNIL---MDEFWTAKISDFGLAKL------LS 169
           R+   V   + YLHD     I+H D+KP+N+L   +DE     ISDFGL+K+      LS
Sbjct: 120 RLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLS 176
Query: 170 DK----GCMAPECYKRTPISVKADVYGYGIVLLETICCWENM--EIDASKPEEIILTNWV 223
                 G +APE   + P S   D +  G++    +C +     E DA   E+I+   + 
Sbjct: 177 TACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYE 236
Query: 224 Y 224
           +
Sbjct: 237 F 237

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM------- 174
           LDV +G+ YL + C   ++H D+  +N L+ E    K+SDFG+ + + D           
Sbjct: 110 LDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 166
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETI 201
                +PE +  +  S K+DV+ +G+++ E  
Sbjct: 167 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 198

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG----------C 173
           + KG+ Y+H +    ++H D+KP NI + +    KI DFGL   L + G           
Sbjct: 145 ITKGVDYIHSK---KLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRY 201
Query: 174 MAPECYKRTPISVKADVYGYGIVLLETI 201
           M+PE         + D+Y  G++L E +
Sbjct: 202 MSPEQISSQDYGKEVDLYALGLILAELL 229

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM------- 174
           LDV +G+ YL + C   ++H D+  +N L+ E    K+SDFG+ + + D           
Sbjct: 108 LDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 164
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETI 201
                +PE +  +  S K+DV+ +G+++ E  
Sbjct: 165 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 196

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 17/96 (17%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL-AKLLSDK------ 171
           ++ + + K + YL ++    ++H D+KP NIL+DE    K+ DFG+  +L+ DK      
Sbjct: 128 KMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSA 185
Query: 172 GC---MAPECYK-----RTPISVKADVYGYGIVLLE 199
           GC   MAPE        +    ++ADV+  GI L+E
Sbjct: 186 GCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVE 221

>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1) Length = 311

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC--------- 173
           D    + +LH +    ++H D+KP NI +      K+ DFGL   L   G          
Sbjct: 165 DTLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPR 221
Query: 174 -MAPECYKRTPISVKADVYGYGIVLLETICCWENMEI 209
            MAPE  + +     ADV+  G+ +LE  C   NME+
Sbjct: 222 YMAPELLQGS-YGTAADVFSLGLTILEVAC---NMEL 254

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 28/115 (24%)
Query: 114 WNQRVRIALDVAKGILYLHDEC--------EPPILHCDIKPQNILMDEFWTAKISDFGLA 165
           WN+   +A  +++G+ YLH++         +P I H D K +N+L+    TA ++DFGLA
Sbjct: 111 WNELCHVAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLA 170
Query: 166 -------------KLLSDKGCMAPEC------YKRTPISVKADVYGYGIVLLETI 201
                          +  +  MAPE       ++R    ++ D+Y  G+VL E +
Sbjct: 171 VRFEPGKPPGDTHGQVGTRRYMAPEVLEGAINFQRDAF-LRIDMYAMGLVLWELV 224

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------A 175
           +G+ +LH  C   I+H D+KP+NIL+    T K++DFGLA++ S +  +          A
Sbjct: 123 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALFPVVVTLWYRA 179
Query: 176 PECYKRTPISVKADVYGYGIVLLE 199
           PE   ++  +   D++  G +  E
Sbjct: 180 PEVLLQSTYATPVDMWSVGCIFAE 203

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------A 175
           +G+ +LH  C   I+H D+KP+NIL+    T K++DFGLA++ S +  +          A
Sbjct: 123 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALDPVVVTLWYRA 179
Query: 176 PECYKRTPISVKADVYGYGIVLLE 199
           PE   ++  +   D++  G +  E
Sbjct: 180 PEVLLQSTYATPVDMWSVGCIFAE 203

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNIL---MDEFWTAKISDFGLAKL------LS 169
           R+   V   + YLHD     I+H D+KP+N+L   +DE     ISDFGL+K+      LS
Sbjct: 120 RLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLS 176
Query: 170 DK----GCMAPECYKRTPISVKADVYGYGIVLLETICCWENM--EIDASKPEEIILTNWV 223
                 G +APE   + P S   D +  G++    +C +     E DA   E+I+   + 
Sbjct: 177 TACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYE 236
Query: 224 Y 224
           +
Sbjct: 237 F 237

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 99  DLAYIIFCSAERNPYWNQ----RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 154
           DLA +I    +   Y ++    RV   L +A    +   +    +LH D+KP N+ +D  
Sbjct: 93  DLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGK 152
Query: 155 WTAKISDFGLAKLLSDKG-----------CMAPECYKRTPISVKADVYGYGIVLLE 199
              K+ DFGLA++L+               M+PE   R   + K+D++  G +L E
Sbjct: 153 QNVKLGDFGLARILNHDEDFAKEFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYE 208

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM------- 174
           LDV +G+ YL + C   ++H D+  +N L+ E    K+SDFG+ + + D           
Sbjct: 130 LDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 186
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETI 201
                +PE +  +  S K+DV+ +G+++ E  
Sbjct: 187 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 218

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 96  LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 155
           L  D A+ I  S        Q +  A DVA+G+ YL    +   +H ++  +NIL+ E +
Sbjct: 120 LETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRNLAARNILVGENY 176
Query: 156 TAKISDFGLAK---LLSDKGC-------MAPECYKRTPISVKADVYGYGIVLLETI 201
            AKI+DFGL++   +   K         MA E    +  +  +DV+ YG++L E +
Sbjct: 177 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 232

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC--MA 175
           +  +  +A+G+ ++        +H D++  NIL+      KI+DFGLA++ +       A
Sbjct: 281 IDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVGAKFPIKWTA 337
Query: 176 PECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL 235
           PE       ++K+DV+ +GI+L+E +          S PE I                 L
Sbjct: 338 PEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVI---------------RAL 382
Query: 236 VRGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
            RG  + +     E L  + + C ++ P  RP+ + +  +L
Sbjct: 383 ERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVL 423

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 15/97 (15%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           V +A  VA G+ Y+        +H D++  NIL+      KI+DFGLA+L+ D      +
Sbjct: 108 VDMAAQVAAGMAYIERMN---YIHRDLRSANILVGNGLICKIADFGLARLIEDNEXTARQ 164
Query: 172 GC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
           G        APE       ++K+DV+ +GI+L E + 
Sbjct: 165 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVT 201

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q +  A  + +G+ YLH +     +H D+  +N+L+D     KI DFGLAK + +     
Sbjct: 135 QLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXY 191
Query: 174 ------------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                        APEC K       +DV+ +G+ L E +   ++ +   +K  E+I
Sbjct: 192 RVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELI 248

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P  ++ +++A ++A G+ YL+       +H D+  +N  + E +T KI DFG+ + +   
Sbjct: 122 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCXVAEDFTVKIGDFGMTRDIYET 178
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 179 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 227
Query: 219 LTNWVYKCFINRELNKLV-RGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVV 271
                Y+   N ++ + V  G  +DK +   + L+++   C Q  P +RPS   ++
Sbjct: 228 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLLELMRMCWQYNPKMRPSFLEII 278

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGLA++L D     
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAA 204
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 248

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPEC 178
           I+H D+KP+N+L+DE    KI+DFGL+ +++D   +   C
Sbjct: 134 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSC 173

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPEC 178
           I+H D+KP+N+L+DE    KI+DFGL+ +++D   +   C
Sbjct: 133 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSC 172

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 25/158 (15%)
Query: 130 YLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-----KGC------MAPEC 178
           ++HD     ILH DIK QNI + +  T ++ DFG+A++L+      + C      ++PE 
Sbjct: 140 HVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEI 196
Query: 179 YKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL---------TNWVYKCFIN 229
            +  P + K+D++  G VL E   C      +A   + ++L          +  Y   + 
Sbjct: 197 CENKPYNNKSDIWALGCVLYE--LCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLR 254
Query: 230 RELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSM 267
             +++L +    D+ ++ ++++ G    + E  L P +
Sbjct: 255 SLVSQLFKRNPRDRPSVNSILEKGFIAKRIEKFLSPQL 292

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPEC 178
           I+H D+KP+N+L+DE    KI+DFGL+ +++D   +   C
Sbjct: 128 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSC 167

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPEC 178
           I+H D+KP+N+L+DE    KI+DFGL+ +++D   +   C
Sbjct: 124 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSC 163

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 35/179 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P   + +++A ++A G+ YL+ +     +H ++  +N ++   +T KI DFG+ + +   
Sbjct: 128 PTLQEMIQMAAEIADGMAYLNAK---KFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYET 184
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      MAPE  K    +  +D++ +G+VL      WE   + A +P    
Sbjct: 185 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVL------WEITSL-AEQP---- 233
Query: 219 LTNWVYKCFINRELNKLVR-GTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP+   +V +L
Sbjct: 234 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLEIVNLL 287

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-------- 171
           + L V + + YLH++    ++H DIK  +IL+      K+SDFG    +S +        
Sbjct: 146 VCLSVLRALSYLHNQG---VIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKXLV 202
Query: 172 GC---MAPECYKRTPISVKADVYGYGIVLLETI 201
           G    MAPE   R P   + D++  GI+++E I
Sbjct: 203 GTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMI 235

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 35/179 (19%)
Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--- 168
           P   + +++A ++A G+ YL+ +     +H ++  +N ++   +T KI DFG+ + +   
Sbjct: 127 PTLQEMIQMAAEIADGMAYLNAK---KFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYET 183
Query: 169 -----SDKGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                  KG      MAPE  K    +  +D++ +G+VL      WE   + A +P    
Sbjct: 184 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVL------WEITSL-AEQP---- 232
Query: 219 LTNWVYKCFINRELNKLVR-GTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP+   +V +L
Sbjct: 233 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLEIVNLL 286

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 95  DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 154
           DL   L+  +  + E   ++   + +ALD      +LH      I++ D+KP+NIL+DE 
Sbjct: 113 DLFTRLSKEVMFTEEDVKFYLAELALALD------HLHSLG---IIYRDLKPENILLDEE 163
Query: 155 WTAKISDFGLAKLLSDK-----------GCMAPECYKRTPISVKADVYGYGIVLLETICC 203
              K++DFGL+K   D              MAPE   R   +  AD + +G+++ E +  
Sbjct: 164 GHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 223

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 15/97 (15%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           +  +  +A+G+ Y+  +     +H D++  N+L+ E    KI+DFGLA+++ D      +
Sbjct: 113 IDFSAQIAEGMAYIERKN---YIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTARE 169
Query: 172 GC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
           G        APE       ++K+DV+ +GI+L E + 
Sbjct: 170 GAKFPIKWTAPEAINFGCFTIKSDVWSFGILLYEIVT 206

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 95  DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 154
           DL   L+  +  + E   ++   + +ALD      +LH      I++ D+KP+NIL+DE 
Sbjct: 112 DLFTRLSKEVMFTEEDVKFYLAELALALD------HLHSLG---IIYRDLKPENILLDEE 162
Query: 155 WTAKISDFGLAKLLSDK-----------GCMAPECYKRTPISVKADVYGYGIVLLETICC 203
              K++DFGL+K   D              MAPE   R   +  AD + +G+++ E +  
Sbjct: 163 GHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 222

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG------- 172
           I  +V +G+ YLH   +   +H D+K  NIL+ E  + +I+DFG++  L+  G       
Sbjct: 126 ILREVLEGLEYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKV 182
Query: 173 --------C-MAPECYKRT-PISVKADVYGYGIVLLE 199
                   C MAPE  ++      KAD++ +GI  +E
Sbjct: 183 RKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIE 219

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---FVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 248

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 23/112 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG++YL    E  ++H D+  +N+L+      KI+DFGLA+LL        +D G 
Sbjct: 124 VQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGK 180
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                MA EC      + ++DV+ YG+ +      WE M     KP + I T
Sbjct: 181 MPIKWMALECIHYRKFTHQSDVWSYGVTI------WELMTF-GGKPYDGIPT 225

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 23/112 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG++YL    E  ++H D+  +N+L+      KI+DFGLA+LL        +D G 
Sbjct: 147 VQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGK 203
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                MA EC      + ++DV+ YG+ +      WE M     KP + I T
Sbjct: 204 MPIKWMALECIHYRKFTHQSDVWSYGVTI------WELMTF-GGKPYDGIPT 248

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 95  DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 154
           DL   L+  +  + E   ++   + +ALD      +LH      I++ D+KP+NIL+DE 
Sbjct: 112 DLFTRLSKEVMFTEEDVKFYLAELALALD------HLHSLG---IIYRDLKPENILLDEE 162
Query: 155 WTAKISDFGLAKLLSDK-----------GCMAPECYKRTPISVKADVYGYGIVLLETICC 203
              K++DFGL+K   D              MAPE   R   +  AD + +G+++ E +  
Sbjct: 163 GHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 222

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG------- 172
           I  +V +G+ YLH   +   +H D+K  NIL+ E  + +I+DFG++  L+  G       
Sbjct: 121 ILREVLEGLEYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKV 177
Query: 173 --------C-MAPECYKRT-PISVKADVYGYGIVLLE 199
                   C MAPE  ++      KAD++ +GI  +E
Sbjct: 178 RKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIE 214

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----K 171
           +  +  VA+G+ +L        +H D+  +N+L+     AKI DFGLA+ +++D     K
Sbjct: 167 LHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 223
Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
           G        MAPE       +V++DV+ YGI+L E      N       P   IL     
Sbjct: 224 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN-------PYPGIL----- 271
Query: 225 KCFINRELNKLVR-GTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
              +N +  KLV+ G ++ +     +N+  +   C   EP  RP+ + +   L
Sbjct: 272 ---VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFL 321

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----K 171
           +  +  VA+G+ +L        +H D+  +N+L+     AKI DFGLA+ +++D     K
Sbjct: 167 LHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 223
Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
           G        MAPE       +V++DV+ YGI+L E      N       P   IL     
Sbjct: 224 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN-------PYPGIL----- 271
Query: 225 KCFINRELNKLVR-GTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
              +N +  KLV+ G ++ +     +N+  +   C   EP  RP+ + +   L
Sbjct: 272 ---VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFL 321

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 119 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 175
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 176 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 219

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 136 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 192
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 193 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 236

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 119 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 175
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 176 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 219

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----K 171
           +  +  VA+G+ +L        +H D+  +N+L+     AKI DFGLA+ +++D     K
Sbjct: 169 LHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 225
Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
           G        MAPE       +V++DV+ YGI+L E      N       P   IL     
Sbjct: 226 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN-------PYPGIL----- 273
Query: 225 KCFINRELNKLVR-GTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
              +N +  KLV+ G ++ +     +N+  +   C   EP  RP+ + +   L
Sbjct: 274 ---VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFL 323

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 148 QLVGMLRGIASGMKYLSDMGA---VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 248

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q +  A  + +G+ YLH +     +H ++  +N+L+D     KI DFGLAK + +     
Sbjct: 118 QLLLFAQQICEGMAYLHSQ---HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 174
Query: 174 ------------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                        APEC K       +DV+ +G+ L E +   ++ +   +K  E+I
Sbjct: 175 RVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELI 231

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 248

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL ++L D     
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAA 204
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 248

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 97  PWDLAYII-FCSAERNPYWNQRVRIALDVAK--------GILYLHDECEPPILHCDIKPQ 147
           P D+  +I +   E   Y  ++ R+  D  +         I Y H      I+H D+KP+
Sbjct: 81  PTDIVMVIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPE 137
Query: 148 NILMDEFWTAKISDFGLAKLLSDKGCMAPEC 178
           N+L+D+    KI+DFGL+ +++D   +   C
Sbjct: 138 NLLLDDNLNVKIADFGLSNIMTDGNFLKTSC 168

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 248

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM------- 174
           LDV +G+ YL    E  ++H D+  +N L+ E    K+SDFG+ + + D           
Sbjct: 110 LDVCEGMAYLE---EASVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 166
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETI 201
                +PE +  +  S K+DV+ +G+++ E  
Sbjct: 167 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 198

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 248

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 248

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 248

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------APECY-KRTPISVK 187
           ++H D+KP+N+L+D    AKI+DFGL+ ++SD   +          APE    R     +
Sbjct: 132 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPE 191
Query: 188 ADVYGYGIVLLETIC 202
            D++  G++L   +C
Sbjct: 192 VDIWSCGVILYALLC 206

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 146 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 202
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        +PE       +  +DV+ YGIVL E +   E
Sbjct: 203 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE 246

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 139 ILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------APECY-KRTPISVK 187
           ++H D+KP+N+L+D    AKI+DFGL+ ++SD   +          APE    R     +
Sbjct: 132 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRDSCGSPNYAAPEVISGRLYAGPE 191
Query: 188 ADVYGYGIVLLETIC 202
            D++  G++L   +C
Sbjct: 192 VDIWSCGVILYALLC 206

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 38/143 (26%)
Query: 94  LDLPWDLAYIIFCSAER-------------NPYWNQR--------VRIALDVAKGILYLH 132
           LD P+ +  I  C AE              N Y  Q         + +   V+ G+ YL 
Sbjct: 63  LDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE 122
Query: 133 DECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC-------------MAPEC 178
              E   +H D+  +N+L+     AKISDFGL+K L +D+                APEC
Sbjct: 123 ---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPEC 179
Query: 179 YKRTPISVKADVYGYGIVLLETI 201
                 S K+DV+ +G+++ E  
Sbjct: 180 INYYKFSSKSDVWSFGVLMWEAF 202

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
           DL + I+   +      + V  A ++  G+  LH E    I++ D+KP+NIL+D+    +
Sbjct: 270 DLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIR 326
Query: 159 ISDFGLAKLLSDK----------GCMAPECYKRTPISVKADVYGYGIVLLETI 201
           ISD GLA  + +           G MAPE  K    +   D +  G +L E I
Sbjct: 327 ISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMI 379

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 38/143 (26%)
Query: 94  LDLPWDLAYIIFCSAER-------------NPYWNQR--------VRIALDVAKGILYLH 132
           LD P+ +  I  C AE              N Y  Q         + +   V+ G+ YL 
Sbjct: 75  LDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE 134
Query: 133 DECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC-------------MAPEC 178
              E   +H D+  +N+L+     AKISDFGL+K L +D+                APEC
Sbjct: 135 ---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPEC 191
Query: 179 YKRTPISVKADVYGYGIVLLETI 201
                 S K+DV+ +G+++ E  
Sbjct: 192 INYYKFSSKSDVWSFGVLMWEAF 214

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 19/106 (17%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL++ L D     
Sbjct: 136 QLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDP 192
Query: 174 --------------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                          APE  +    +  +DV+ YGIV+ E +   E
Sbjct: 193 TYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGE 238

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----K 171
           +  +  VA+G+ +L        +H D+  +N+L+     AKI DFGLA+ +++D     K
Sbjct: 155 LHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 211
Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
           G        MAPE       +V++DV+ YGI+L E      N       P   IL     
Sbjct: 212 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN-------PYPGIL----- 259
Query: 225 KCFINRELNKLVR-GTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
              +N +  KLV+ G ++ +     +N+  +   C   EP  RP+ + +   L
Sbjct: 260 ---VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFL 309

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 38/143 (26%)
Query: 94  LDLPWDLAYIIFCSAER-------------NPYWNQR--------VRIALDVAKGILYLH 132
           LD P+ +  I  C AE              N Y  Q         + +   V+ G+ YL 
Sbjct: 65  LDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE 124
Query: 133 DECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC-------------MAPEC 178
              E   +H D+  +N+L+     AKISDFGL+K L +D+                APEC
Sbjct: 125 ---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPEC 181
Query: 179 YKRTPISVKADVYGYGIVLLETI 201
                 S K+DV+ +G+++ E  
Sbjct: 182 INYYKFSSKSDVWSFGVLMWEAF 204

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
           DL + I+   +      + V  A ++  G+  LH E    I++ D+KP+NIL+D+    +
Sbjct: 270 DLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIR 326
Query: 159 ISDFGLAKLLSDK----------GCMAPECYKRTPISVKADVYGYGIVLLETI 201
           ISD GLA  + +           G MAPE  K    +   D +  G +L E I
Sbjct: 327 ISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMI 379

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 38/143 (26%)
Query: 94  LDLPWDLAYIIFCSAER-------------NPYWNQR--------VRIALDVAKGILYLH 132
           LD P+ +  I  C AE              N Y  Q         + +   V+ G+ YL 
Sbjct: 69  LDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE 128
Query: 133 DECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC-------------MAPEC 178
              E   +H D+  +N+L+     AKISDFGL+K L +D+                APEC
Sbjct: 129 ---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENXYKAQTHGKWPVKWYAPEC 185
Query: 179 YKRTPISVKADVYGYGIVLLETI 201
                 S K+DV+ +G+++ E  
Sbjct: 186 INYYKFSSKSDVWSFGVLMWEAF 208

>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory Dimer Length = 316

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 18/96 (18%)
Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK------- 171
           +IA+ + K + +LH +    ++H D+KP N+L++     K  DFG++  L D        
Sbjct: 140 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKXCDFGISGYLVDDVAKDIDA 197
Query: 172 GC--------MAPECYKRTPISVKADVYGYGIVLLE 199
           GC        + PE  ++   SVK+D++  GI  +E
Sbjct: 198 GCKPYXAPERINPELNQKG-YSVKSDIWSLGITXIE 232

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q +  A  + +G+ YLH +     +H ++  +N+L+D     KI DFGLAK + +     
Sbjct: 118 QLLLFAQQICEGMAYLHAQ---HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 174
Query: 174 ------------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                        APEC K       +DV+ +G+ L E +   ++ +   +K  E+I
Sbjct: 175 RVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELI 231

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM- 174
           Q +  A  + +G+ YLH +     +H  +  +N+L+D     KI DFGLAK + +     
Sbjct: 113 QLLLFAQQICEGMAYLHAQ---HYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 169
Query: 175 -------------APECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                        APEC K       +DV+ +G+ L E +   ++ +   +K  E+I  +
Sbjct: 170 RVREDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYELLTYCDSNQSPHTKFTELI-GH 228
Query: 222 WVYKCFINRELNKLVRGTEVDKKN-----LENLVKVGLWCVQDEPALRPSMKCVVMML 274
              +  + R    L RG  + + +     + +L+K    C + E + RP+ + +V +L
Sbjct: 229 TQGQMTVLRLTELLERGERLPRPDRCPCEIYHLMKN---CWETEASFRPTFQNLVPIL 283

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM- 174
           Q +  A  + +G+ YLH +     +H  +  +N+L+D     KI DFGLAK + +     
Sbjct: 112 QLLLFAQQICEGMAYLHAQ---HYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 168
Query: 175 -------------APECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                        APEC K       +DV+ +G+ L E +   ++ +   +K  E+I  +
Sbjct: 169 RVREDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYELLTYCDSNQSPHTKFTELI-GH 227
Query: 222 WVYKCFINRELNKLVRGTEVDKKN-----LENLVKVGLWCVQDEPALRPSMKCVVMML 274
              +  + R    L RG  + + +     + +L+K    C + E + RP+ + +V +L
Sbjct: 228 TQGQMTVLRLTELLERGERLPRPDRCPCEIYHLMKN---CWETEASFRPTFQNLVPIL 282

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 38/143 (26%)
Query: 94  LDLPWDLAYIIFCSAER-------------NPYWNQR--------VRIALDVAKGILYLH 132
           LD P+ +  I  C AE              N Y  Q         + +   V+ G+ YL 
Sbjct: 69  LDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE 128
Query: 133 DECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC-------------MAPEC 178
              E   +H D+  +N+L+     AKISDFGL+K L +D+                APEC
Sbjct: 129 ---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPEC 185
Query: 179 YKRTPISVKADVYGYGIVLLETI 201
                 S K+DV+ +G+++ E  
Sbjct: 186 INYYKFSSKSDVWSFGVLMWEAF 208

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----K 171
           +  +  VA+G+ +L        +H D+  +N+L+     AKI DFGLA+ +++D     K
Sbjct: 163 LHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 219
Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
           G        MAPE       +V++DV+ YGI+L E      N       P   IL     
Sbjct: 220 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN-------PYPGIL----- 267
Query: 225 KCFINRELNKLVR-GTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
              +N +  KLV+ G ++ +     +N+  +   C   EP  RP+ + +   L
Sbjct: 268 ---VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFL 317

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----K 171
           +  +  VA+G+ +L        +H D+  +N+L+     AKI DFGLA+ +++D     K
Sbjct: 161 LHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 217
Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
           G        MAPE       +V++DV+ YGI+L E      N       P   IL     
Sbjct: 218 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN-------PYPGIL----- 265
Query: 225 KCFINRELNKLVR-GTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
              +N +  KLV+ G ++ +     +N+  +   C   EP  RP+ + +   L
Sbjct: 266 ---VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFL 315

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 38/143 (26%)
Query: 94  LDLPWDLAYIIFCSAER-------------NPYWNQR--------VRIALDVAKGILYLH 132
           LD P+ +  I  C AE              N Y  Q         + +   V+ G+ YL 
Sbjct: 85  LDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE 144
Query: 133 DECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC-------------MAPEC 178
              E   +H D+  +N+L+     AKISDFGL+K L +D+                APEC
Sbjct: 145 ---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPEC 201
Query: 179 YKRTPISVKADVYGYGIVLLETI 201
                 S K+DV+ +G+++ E  
Sbjct: 202 INYYKFSSKSDVWSFGVLMWEAF 224

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 38/143 (26%)
Query: 94  LDLPWDLAYIIFCSAER-------------NPYWNQR--------VRIALDVAKGILYLH 132
           LD P+ +  I  C AE              N Y  Q         + +   V+ G+ YL 
Sbjct: 85  LDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE 144
Query: 133 DECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC-------------MAPEC 178
              E   +H D+  +N+L+     AKISDFGL+K L +D+                APEC
Sbjct: 145 ---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPEC 201
Query: 179 YKRTPISVKADVYGYGIVLLETI 201
                 S K+DV+ +G+++ E  
Sbjct: 202 INYYKFSSKSDVWSFGVLMWEAF 224

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 38/143 (26%)
Query: 94  LDLPWDLAYIIFCSAER-------------NPYWNQR--------VRIALDVAKGILYLH 132
           LD P+ +  I  C AE              N Y  Q         + +   V+ G+ YL 
Sbjct: 83  LDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE 142
Query: 133 DECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC-------------MAPEC 178
              E   +H D+  +N+L+     AKISDFGL+K L +D+                APEC
Sbjct: 143 ---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPEC 199
Query: 179 YKRTPISVKADVYGYGIVLLETI 201
                 S K+DV+ +G+++ E  
Sbjct: 200 INYYKFSSKSDVWSFGVLMWEAF 222

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG-----CMAPECYK 180
           +G+ YLH      ILH D+KP N+L+DE    K++DFGLAK            +    Y+
Sbjct: 123 QGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYXHQVVTRWYR 179
Query: 181 RTPISVKADVYGYGI 195
              +   A +YG G+
Sbjct: 180 APELLFGARMYGVGV 194

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   V  G+ YL D      +H D+  +N+L+D     K+SDFGL+++L D     
Sbjct: 152 QLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAA 208
Query: 171 ----KGCM-----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                G +     APE       S  +DV+ +G+V+ E +   E
Sbjct: 209 YTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGE 252

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 38/144 (26%)
Query: 94  LDLPWDLAYIIFCSAER-------------NPYWNQR--------VRIALDVAKGILYLH 132
           LD P+ +  I  C AE              N Y  Q         + +   V+ G+ YL 
Sbjct: 427 LDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE 486
Query: 133 DECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC-------------MAPEC 178
              E   +H D+  +N+L+     AKISDFGL+K L +D+                APEC
Sbjct: 487 ---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPEC 543
Query: 179 YKRTPISVKADVYGYGIVLLETIC 202
                 S K+DV+ +G+++ E   
Sbjct: 544 INYYKFSSKSDVWSFGVLMWEAFS 567

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   V  G+ YL D      +H D+  +N+L+D     K+SDFGL+++L D     
Sbjct: 152 QLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAA 208
Query: 171 ----KGCM-----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                G +     APE       S  +DV+ +G+V+ E +   E
Sbjct: 209 XTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGE 252

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 38/144 (26%)
Query: 94  LDLPWDLAYIIFCSAER-------------NPYWNQR--------VRIALDVAKGILYLH 132
           LD P+ +  I  C AE              N Y  Q         + +   V+ G+ YL 
Sbjct: 428 LDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLE 487
Query: 133 DECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC-------------MAPEC 178
              E   +H D+  +N+L+     AKISDFGL+K L +D+                APEC
Sbjct: 488 ---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPEC 544
Query: 179 YKRTPISVKADVYGYGIVLLETIC 202
                 S K+DV+ +G+++ E   
Sbjct: 545 INYYKFSSKSDVWSFGVLMWEAFS 568

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC- 173
           Q+++ A+ + KG+ YL        +H D+  +N+L++     KI DFGL K + +DK   
Sbjct: 115 QQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXX 171
Query: 174 ------------MAPECYKRTPISVKADVYGYGIVLLETI 201
                        APEC  ++   + +DV+ +G+ L E +
Sbjct: 172 TVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELL 211

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 17/89 (19%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-------LLSDK---- 171
           D+ KGI YLH +    I+H DIKP N+L+ E    KI+DFG++        LLS+     
Sbjct: 145 DLIKGIEYLHYQ---KIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTP 201
Query: 172 GCMAPECYKRTP--ISVKA-DVYGYGIVL 197
             MAPE    T    S KA DV+  G+ L
Sbjct: 202 AFMAPESLSETRKIFSGKALDVWAMGVTL 230

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   ++ G+ YL D      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 125 QLVGMLRGISAGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 181
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        APE       +  +DV+ YGIV+ E +   E
Sbjct: 182 YTTRGGKIPIRWTAPEAIAFRKFTSASDVWSYGIVMWEVVSYGE 225

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM 174
           Q+++ A+ + KG+ YL        +H D+  +N+L++     KI DFGL K + +DK   
Sbjct: 127 QQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXX 183
Query: 175 -------------APECYKRTPISVKADVYGYGIVLLETI 201
                        APEC  ++   + +DV+ +G+ L E +
Sbjct: 184 TVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELL 223

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-----------M 174
           KG+ YLH   +   +H DIK  NIL++    AK++DFG+A  L+D              M
Sbjct: 136 KGLEYLHFMRK---IHRDIKAGNILLNTEGHAKLADFGVAGQLTDXMAKRNXVIGTPFWM 192
Query: 175 APECYKRTPISVKADVYGYGIVLLE 199
           APE  +    +  AD++  GI  +E
Sbjct: 193 APEVIQEIGYNCVADIWSLGITAIE 217

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 15/97 (15%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           +  +  +A+G+ Y+  +     +H D++  N+L+ E    KI+DFGLA+++ D      +
Sbjct: 112 IDFSAQIAEGMAYIERKN---YIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTARE 168
Query: 172 GC------MAPECYKRTPISVKADVYGYGIVLLETIC 202
           G        APE       ++K++V+ +GI+L E + 
Sbjct: 169 GAKFPIKWTAPEAINFGCFTIKSNVWSFGILLYEIVT 205

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 33/172 (19%)
Query: 109 ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
           ER       +  A  +++G+ YL    E  ++H D+  +NIL+ E    KISDFGL++ +
Sbjct: 144 ERALTMGDLISFAWQISQGMQYL---AEMSLVHRDLAARNILVAEGRKMKISDFGLSRDV 200
Query: 169 SDKGCMAPECYKRTPI-------------SVKADVYGYGIVLLETICCWENMEIDASKPE 215
            ++         R P+             + ++DV+ +G++L E +    N       PE
Sbjct: 201 YEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGN-PYPGIPPE 259
Query: 216 EIILTNWVYKCFINRELNKLVRGTEVDKKN--LENLVKVGLWCVQDEPALRP 265
                         R  N L  G  +++ +   E + ++ L C + EP  RP
Sbjct: 260 --------------RLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRP 297

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 33/163 (20%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPE 177
           +  A  +++G+ YL    E  ++H D+  +NIL+ E    KISDFGL++ + ++      
Sbjct: 153 ISFAWQISQGMQYL---AEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKR 209
Query: 178 CYKRTPI-------------SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
              R P+             + ++DV+ +G++L E +    N       PE         
Sbjct: 210 SQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGN-PYPGIPPE--------- 259
Query: 225 KCFINRELNKLVRGTEVDKKN--LENLVKVGLWCVQDEPALRP 265
                R  N L  G  +++ +   E + ++ L C + EP  RP
Sbjct: 260 -----RLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRP 297

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---------- 173
           V+ G+ YL    E   +H D+  +N+L+     AKISDFGL+K L               
Sbjct: 119 VSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKW 175
Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETI 201
                APEC      S ++DV+ YG+ + E +
Sbjct: 176 PLKWYAPECINFRKFSSRSDVWSYGVTMWEAL 207

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 17/84 (20%)
Query: 127 GILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGLAKLL-SDKGC--------- 173
            + Y H +    ++H D+KP+NIL  +       KI DFGLA+L  SD+           
Sbjct: 136 ALAYFHSQH---VVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALY 192
Query: 174 MAPECYKRTPISVKADVYGYGIVL 197
           MAPE +KR  ++ K D++  G+V+
Sbjct: 193 MAPEVFKRD-VTFKCDIWSAGVVM 215

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 21/107 (19%)
Query: 116 QRVRIALDVAKGILYLHDECEP-------PILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
           QR R  LD ++ +LY    C+          +H D+  +NIL++     KI+DFGLAKLL
Sbjct: 105 QRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 164
Query: 169 S-DKGC-------------MAPECYKRTPISVKADVYGYGIVLLETI 201
             DK                APE       S ++DV+ +G+VL E  
Sbjct: 165 PLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELF 211

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 33/172 (19%)
Query: 109 ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
           ER       +  A  +++G+ YL    E  ++H D+  +NIL+ E    KISDFGL++ +
Sbjct: 144 ERALTMGDLISFAWQISQGMQYL---AEMKLVHRDLAARNILVAEGRKMKISDFGLSRDV 200
Query: 169 SDKGCMAPECYKRTPI-------------SVKADVYGYGIVLLETICCWENMEIDASKPE 215
            ++         R P+             + ++DV+ +G++L E +    N       PE
Sbjct: 201 YEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGN-PYPGIPPE 259
Query: 216 EIILTNWVYKCFINRELNKLVRGTEVDKKN--LENLVKVGLWCVQDEPALRP 265
                         R  N L  G  +++ +   E + ++ L C + EP  RP
Sbjct: 260 --------------RLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRP 297

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPEC---YKRTP 183
           GI +LH      I+H D+KP NI++    T KI DFGLA+       M PE    Y R P
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAP 194
Query: 184 ISV-------KADVYGYGIVLLETIC 202
             +         D++  G ++ E +C
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMVC 220

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 28/109 (25%)
Query: 118 VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-- 170
           +RI L +A G+ +LH E      +P I H D+K +NIL+ +     I+D GLA + S   
Sbjct: 108 LRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST 167
Query: 171 -------------KGCMAPECYKRTPISV-------KADVYGYGIVLLE 199
                        K  MAPE    T I V       + D++ +G+VL E
Sbjct: 168 NQLDVGNNPRVGTKRYMAPEVLDET-IQVDCFDSYKRVDIWAFGLVLWE 215

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG----------C 173
           + KG+ Y+H +    +++ D+KP NI + +    KI DFGL   L + G           
Sbjct: 131 ITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRXRSKGTLRY 187
Query: 174 MAPECYKRTPISVKADVYGYGIVLLETI 201
           M+PE         + D+Y  G++L E +
Sbjct: 188 MSPEQISSQDYGKEVDLYALGLILAELL 215

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 28/109 (25%)
Query: 118 VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-- 170
           +RI L +A G+ +LH E      +P I H D+K +NIL+ +     I+D GLA + S   
Sbjct: 108 LRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST 167
Query: 171 -------------KGCMAPECYKRTPISV-------KADVYGYGIVLLE 199
                        K  MAPE    T I V       + D++ +G+VL E
Sbjct: 168 NQLDVGNNPRVGTKRYMAPEVLDET-IQVDCFDSYKRVDIWAFGLVLWE 215

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 28/109 (25%)
Query: 118 VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-- 170
           +RI L +A G+ +LH E      +P I H D+K +NIL+ +     I+D GLA + S   
Sbjct: 137 LRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST 196
Query: 171 -------------KGCMAPECYKRTPISV-------KADVYGYGIVLLE 199
                        K  MAPE    T I V       + D++ +G+VL E
Sbjct: 197 NQLDVGNNPRVGTKRYMAPEVLDET-IQVDCFDSYKRVDIWAFGLVLWE 244

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 21/107 (19%)
Query: 116 QRVRIALDVAKGILYLHDECEP-------PILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
           QR R  LD ++ +LY    C+          +H D+  +NIL++     KI+DFGLAKLL
Sbjct: 102 QRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 161
Query: 169 S-DKGC-------------MAPECYKRTPISVKADVYGYGIVLLETI 201
             DK                APE       S ++DV+ +G+VL E  
Sbjct: 162 PLDKDXXVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELF 208

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 21/107 (19%)
Query: 116 QRVRIALDVAKGILYLHDECEP-------PILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
           QR R  LD ++ +LY    C+          +H D+  +NIL++     KI+DFGLAKLL
Sbjct: 118 QRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 177
Query: 169 S-DKGC-------------MAPECYKRTPISVKADVYGYGIVLLETI 201
             DK                APE       S ++DV+ +G+VL E  
Sbjct: 178 PLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELF 224

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 109 ERNPYWNQRVRIALD-VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGL 164
           ER  Y  +   + +  V   + YLH   E  I+H D+KP+N+L    +E     I+DFGL
Sbjct: 99  ERGVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGL 155
Query: 165 AKLLSDK---------GCMAPECYKRTPISVKADVYGYGIVLLETICCW 204
           +K+  +          G +APE   + P S   D +  G++    +C +
Sbjct: 156 SKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGY 204

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLA+LL        +D G 
Sbjct: 126 MQIAKGMSYLEDVR---LVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGK 182
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                MA E   R   + ++DV+ YG+ +      WE M   A KP + I
Sbjct: 183 VPIKWMALESILRRRFTHQSDVWSYGVTV------WELMTFGA-KPYDGI 225

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSDKGC----- 173
            A  VAKG+ +L  +     +H D+  +N+L+      KI DFGLA+ ++SD        
Sbjct: 177 FAYQVAKGMEFLEFK---SCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGN 233
Query: 174 -------MAPECYKRTPISVKADVYGYGIVLLETICCWEN 206
                  MAPE       ++K+DV+ YGI+L E      N
Sbjct: 234 ARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVN 273

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNIL---MDEFWTAKISDFGLAKLLSDK--- 171
           +R  LD    + YLH      I+H D+KP+N+L    DE     ISDFGL+K+       
Sbjct: 126 IRQVLDA---VYYLH---RMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVM 179
Query: 172 -------GCMAPECYKRTPISVKADVYGYGIVLLETICCW 204
                  G +APE   + P S   D +  G++    +C +
Sbjct: 180 STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 219

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 107 SAERNPYWNQRVR---------IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 157
           + E N Y   RV+             +  G+LYLH      ILH D+   N+L+      
Sbjct: 95  NGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNI 151
Query: 158 KISDFGLA---KLLSDK--------GCMAPECYKRTPISVKADVYGYGIVLLETICCWEN 206
           KI+DFGLA   K+  +K          ++PE   R+   +++DV+  G +    +     
Sbjct: 152 KIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPP 211
Query: 207 MEIDASKP--EEIILTNWVYKCFINRE----LNKLVRGTEVDKKNLENLV 250
            + D  K    +++L ++    F++ E    +++L+R    D+ +L +++
Sbjct: 212 FDTDTVKNTLNKVVLADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVL 261

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 21/107 (19%)
Query: 116 QRVRIALDVAKGILYLHDECEP-------PILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
           QR R  LD ++ +LY    C+          +H D+  +NIL++     KI+DFGLAKLL
Sbjct: 106 QRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 165
Query: 169 S-DKGC-------------MAPECYKRTPISVKADVYGYGIVLLETI 201
             DK                APE       S ++DV+ +G+VL E  
Sbjct: 166 PLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELF 212

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMA 175
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS +   A
Sbjct: 118 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA 167

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 32/168 (19%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM 174
           +Q + +  DV +G+ +L        +H D+  +N L+D     K+SDFG+ + + D   +
Sbjct: 104 SQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYV 160
Query: 175 ------------APECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW 222
                       APE +     S K+DV+ +GI++ E     + M  D     E++L   
Sbjct: 161 SSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGK-MPYDLYTNSEVVL--- 216
Query: 223 VYKCFINRELNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALRPSMK 268
                      K+ +G  + + +L  + + ++   C  + P  RP+ +
Sbjct: 217 -----------KVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQ 253

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 114 WNQRVRIALDVAKGILYLH------DECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL 167
           W    R+A  V +G+ YLH      D  +P I H D+  +N+L+    T  ISDFGL+  
Sbjct: 110 WVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMR 169
Query: 168 LSDKGCMAP 176
           L+    + P
Sbjct: 170 LTGNRLVRP 178

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 183

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMA 175
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS +   A
Sbjct: 117 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA 166

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 183

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 141 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 184

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 141 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 184

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 138 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 181

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +  G+ YL D      +H D+  +NIL++     K+SDFG++++L D     
Sbjct: 132 QLVGMLRGIGSGMKYLSDMSA---VHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAA 188
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
              +G        APE       +  +DV+ YGIV+ E +   E
Sbjct: 189 YTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGE 232

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMA 175
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS +   A
Sbjct: 116 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA 165

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMA 175
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS +   A
Sbjct: 115 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA 164

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 183

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 183

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 183

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 26/108 (24%)
Query: 118 VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDFGLA------- 165
           +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I+D GLA       
Sbjct: 104 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSAT 163
Query: 166 --------KLLSDKGCMAPEC------YKRTPISVKADVYGYGIVLLE 199
                     +  K  MAPE        K      +AD+Y  G+V  E
Sbjct: 164 DTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 211

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           S +R  ++   +  ALD      YLH   E  +++ D+K +N+++D+    KI+DFGL K
Sbjct: 246 SEDRARFYGAEIVSALD------YLH--SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK 297
Query: 167 LLSDKGC-----------MAPECYKRTPISVKADVYGYGIVLLETIC 202
                G            +APE  +        D +G G+V+ E +C
Sbjct: 298 EGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 344

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 32/190 (16%)
Query: 101 AYIIFCSAERNPY---WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 157
           A+++      NP+       VR  +D+A G+ YL        +H D+  +N ++ E  T 
Sbjct: 120 AFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTV 176
Query: 158 KISDFGLAKLLSDKGCMAPECYKRTPI-------------SVKADVYGYGIVLLETICCW 204
            ++DFGL++ +         C  + P+             +V +DV+ +G+ +      W
Sbjct: 177 CVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTM------W 230
Query: 205 ENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALR 264
           E M      P   I    +Y   I    N+L +  E     +E +  +   C   +P  R
Sbjct: 231 EIM-TRGQTPYAGIENAEIYNYLIGG--NRLKQPPEC----MEEVYDLMYQCWSADPKQR 283
Query: 265 PSMKCVVMML 274
           PS  C+ M L
Sbjct: 284 PSFTCLRMEL 293

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +  G+ YL D      +H D+  +NIL++     K+SDFG++++L D     
Sbjct: 111 QLVGMLRGIGSGMKYLSDMS---YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAA 167
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI 217
              +G        APE       +  +DV+ YGIV+ E +   E    D S  + I
Sbjct: 168 YTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVI 223

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +  G+ YL D      +H D+  +NIL++     K+SDFG++++L D     
Sbjct: 117 QLVGMLRGIGSGMKYLSDMS---YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAA 173
Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI 217
              +G        APE       +  +DV+ YGIV+ E +   E    D S  + I
Sbjct: 174 YTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVI 229

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 143 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 186

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 26/108 (24%)
Query: 118 VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDFGLA------- 165
           +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I+D GLA       
Sbjct: 109 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSAT 168
Query: 166 --------KLLSDKGCMAPEC------YKRTPISVKADVYGYGIVLLE 199
                     +  K  MAPE        K      +AD+Y  G+V  E
Sbjct: 169 DTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 216

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 26/108 (24%)
Query: 118 VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDFGLA------- 165
           +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I+D GLA       
Sbjct: 103 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSAT 162
Query: 166 --------KLLSDKGCMAPEC------YKRTPISVKADVYGYGIVLLE 199
                     +  K  MAPE        K      +AD+Y  G+V  E
Sbjct: 163 DTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 210

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 138 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 181

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           S +R  ++   +  ALD      YLH   E  +++ D+K +N+++D+    KI+DFGL K
Sbjct: 249 SEDRARFYGAEIVSALD------YLH--SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK 300
Query: 167 LLSDKGC-----------MAPECYKRTPISVKADVYGYGIVLLETIC 202
                G            +APE  +        D +G G+V+ E +C
Sbjct: 301 EGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 347

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 138 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 181

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 21/118 (17%)
Query: 95  DLPWDLA-YIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 153
           DL + L+ + +F  A+   Y       A ++  G+ ++H+     +++ D+KP NIL+DE
Sbjct: 277 DLHYHLSQHGVFSEADMRFY-------AAEIILGLEHMHNRF---VVYRDLKPANILLDE 326
Query: 154 FWTAKISDFGLAKLLSDK---------GCMAPECYKR-TPISVKADVYGYGIVLLETI 201
               +ISD GLA   S K         G MAPE  ++       AD +  G +L + +
Sbjct: 327 HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL 384

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 183

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 138 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 181

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 26/108 (24%)
Query: 118 VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDFGLA------- 165
           +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I+D GLA       
Sbjct: 129 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSAT 188
Query: 166 --------KLLSDKGCMAPEC------YKRTPISVKADVYGYGIVLLE 199
                     +  K  MAPE        K      +AD+Y  G+V  E
Sbjct: 189 DTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 236

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL++++ D     
Sbjct: 146 QLVGMLRGIAAGMRYLADMG---YVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAV 202
Query: 171 ----KGCM-----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                G +     APE  +    +  +DV+ YGIV+ E +   E
Sbjct: 203 YTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGE 246

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 21/118 (17%)
Query: 95  DLPWDLA-YIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 153
           DL + L+ + +F  A+   Y       A ++  G+ ++H+     +++ D+KP NIL+DE
Sbjct: 278 DLHYHLSQHGVFSEADMRFY-------AAEIILGLEHMHNRF---VVYRDLKPANILLDE 327
Query: 154 FWTAKISDFGLAKLLSDK---------GCMAPECYKR-TPISVKADVYGYGIVLLETI 201
               +ISD GLA   S K         G MAPE  ++       AD +  G +L + +
Sbjct: 328 HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL 385

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPEC---YKRTP 183
           GI +LH      I+H D+KP NI++    T KI DFGLA+       M PE    Y R P
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAP 194
Query: 184 ISV-------KADVYGYGIVLLETIC 202
             +         D++  G ++ E +C
Sbjct: 195 EVILGMGYKENVDLWSVGCIMGEMVC 220

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           L +  GI Y HD     +LH D+KPQN+L++     KI+DFGLA+
Sbjct: 107 LQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLAR 148

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           L +  GI Y HD     +LH D+KPQN+L++     KI+DFGLA+
Sbjct: 107 LQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLAR 148

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 26/108 (24%)
Query: 118 VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDFGLA------- 165
           +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I+D GLA       
Sbjct: 106 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSAT 165
Query: 166 --------KLLSDKGCMAPEC------YKRTPISVKADVYGYGIVLLE 199
                     +  K  MAPE        K      +AD+Y  G+V  E
Sbjct: 166 DTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 213

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           L +  GI Y HD     +LH D+KPQN+L++     KI+DFGLA+
Sbjct: 107 LQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLAR 148

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 21/118 (17%)
Query: 95  DLPWDLA-YIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 153
           DL + L+ + +F  A+   Y       A ++  G+ ++H+     +++ D+KP NIL+DE
Sbjct: 278 DLHYHLSQHGVFSEADMRFY-------AAEIILGLEHMHNRF---VVYRDLKPANILLDE 327
Query: 154 FWTAKISDFGLAKLLSDK---------GCMAPECYKR-TPISVKADVYGYGIVLLETI 201
               +ISD GLA   S K         G MAPE  ++       AD +  G +L + +
Sbjct: 328 HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL 385

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 21/118 (17%)
Query: 95  DLPWDLA-YIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 153
           DL + L+ + +F  A+   Y       A ++  G+ ++H+     +++ D+KP NIL+DE
Sbjct: 278 DLHYHLSQHGVFSEADMRFY-------AAEIILGLEHMHNRF---VVYRDLKPANILLDE 327
Query: 154 FWTAKISDFGLAKLLSDK---------GCMAPECYKR-TPISVKADVYGYGIVLLETI 201
               +ISD GLA   S K         G MAPE  ++       AD +  G +L + +
Sbjct: 328 HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL 385

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---------M 174
           V     Y+H+E    I H D+KP NILMD+    K+SDFG ++ + DK           M
Sbjct: 160 VLNSFSYIHNE--KNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFM 217
Query: 175 APECY--KRTPISVKADVYGYGIVL 197
            PE +  + +    K D++  GI L
Sbjct: 218 PPEFFSNESSYNGAKVDIWSLGICL 242

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 103 IIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD 161
           + F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+    KI+D
Sbjct: 95  LFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITD 151
Query: 162 FGLAK-LLSDKGCM----------APECYKRTPISVKADVYGYGIVLLETIC 202
           FGL K  +SD   M          APE  +        D +G G+V+ E +C
Sbjct: 152 FGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 203

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 137 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 180

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 145 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 188

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 137 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 180

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 103 IIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD 161
           + F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+    KI+D
Sbjct: 92  LFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITD 148
Query: 162 FGLAKL-LSDKGCM----------APECYKRTPISVKADVYGYGIVLLETIC 202
           FGL K  +SD   M          APE  +        D +G G+V+ E +C
Sbjct: 149 FGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 200

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
           ++   + YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS
Sbjct: 122 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLS 165

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 26/108 (24%)
Query: 118 VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDFGLA------- 165
           +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I+D GLA       
Sbjct: 142 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSAT 201
Query: 166 --------KLLSDKGCMAPEC------YKRTPISVKADVYGYGIVLLE 199
                     +  K  MAPE        K      +AD+Y  G+V  E
Sbjct: 202 DTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 249

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 103 IIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD 161
           + F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+    KI+D
Sbjct: 92  LFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITD 148
Query: 162 FGLAK-LLSDKGCM----------APECYKRTPISVKADVYGYGIVLLETIC 202
           FGL K  +SD   M          APE  +        D +G G+V+ E +C
Sbjct: 149 FGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 200

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 19/111 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNIL-MDEFWTA---KISDFGLAKLL-SDKGCM---- 174
           + K + YLH +    ++H D+KP NIL +DE       +I DFG AK L ++ G +    
Sbjct: 130 IGKTVEYLHSQG---VVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLLMTPC 186
Query: 175 ------APECYKRTPISVKADVYGYGIVLLETICCWENMEIDASK-PEEII 218
                 APE  KR       D++  GI+L   +  +       S  PEEI+
Sbjct: 187 YTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEIL 237

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 103 IIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD 161
           + F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+    KI+D
Sbjct: 92  LFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITD 148
Query: 162 FGLAKL-LSDKGCM----------APECYKRTPISVKADVYGYGIVLLETIC 202
           FGL K  +SD   M          APE  +        D +G G+V+ E +C
Sbjct: 149 FGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 200

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 103 IIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD 161
           + F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+    KI+D
Sbjct: 97  LFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITD 153
Query: 162 FGLAKL-LSDKGCM----------APECYKRTPISVKADVYGYGIVLLETIC 202
           FGL K  +SD   M          APE  +        D +G G+V+ E +C
Sbjct: 154 FGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 205

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 103 IIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD 161
           + F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+    KI+D
Sbjct: 92  LFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITD 148
Query: 162 FGLAK-LLSDKGCM----------APECYKRTPISVKADVYGYGIVLLETIC 202
           FGL K  +SD   M          APE  +        D +G G+V+ E +C
Sbjct: 149 FGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 200

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           S +R  ++   +  ALD      YLH   E  +++ D+K +N+++D+    KI+DFGL K
Sbjct: 106 SEDRARFYGAEIVSALD------YLH--SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK 157
Query: 167 LLSDKGC-----------MAPECYKRTPISVKADVYGYGIVLLETIC 202
                G            +APE  +        D +G G+V+ E +C
Sbjct: 158 EGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 204

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           S +R  ++   +  ALD      YLH   E  +++ D+K +N+++D+    KI+DFGL K
Sbjct: 107 SEDRARFYGAEIVSALD------YLH--SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK 158
Query: 167 LLSDKGC-----------MAPECYKRTPISVKADVYGYGIVLLETIC 202
                G            +APE  +        D +G G+V+ E +C
Sbjct: 159 EGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 205

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 103 IIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD 161
           + F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+    KI+D
Sbjct: 92  LFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITD 148
Query: 162 FGLAK-LLSDKGCM----------APECYKRTPISVKADVYGYGIVLLETIC 202
           FGL K  +SD   M          APE  +        D +G G+V+ E +C
Sbjct: 149 FGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 200

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q V +   +A G+ YL    E   +H D+  +NIL++     K+SDFGL++ L +     
Sbjct: 117 QLVGMLRGIASGMRYL---AEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDP 173
Query: 174 --------------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI 217
                          APE       +  +D + YGIV+ E +   E    D S  + I
Sbjct: 174 TYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVI 231

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK-LLSD-----K 171
           +  +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+ +  D     K
Sbjct: 147 IXYSFQVAKGMEFL---ASRKXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDYVRK 203
Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
           G        MAPE       ++++DV+ +G++L      WE   + AS    + +     
Sbjct: 204 GDARLPLKWMAPETIFDRVYTIQSDVWSFGVLL------WEIFSLGASPYPGVKIDEE-- 255
Query: 225 KCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
                R L +  R    D    E + +  L C   EP+ RP+   +V  L
Sbjct: 256 ---FXRRLKEGTRMRAPDYTTPE-MYQTMLDCWHGEPSQRPTFSELVEHL 301

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           S +R  ++   +  ALD      YLH   E  +++ D+K +N+++D+    KI+DFGL K
Sbjct: 108 SEDRARFYGAEIVSALD------YLH--SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK 159
Query: 167 LLSDKGC-----------MAPECYKRTPISVKADVYGYGIVLLETIC 202
                G            +APE  +        D +G G+V+ E +C
Sbjct: 160 EGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 206

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 123 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGES 179
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 180 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 215

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 110 RNPYWNQRVR--IALDVAKGILYLHDECEPPILHCDIKPQNIL-MDEFWTA---KISDFG 163
           R  ++++R    +   + K + YLH +    ++H D+KP NIL +DE       +I DFG
Sbjct: 114 RQKFFSEREASFVLHTIGKTVEYLHSQG---VVHRDLKPSNILYVDESGNPECLRICDFG 170
Query: 164 LAKLL-SDKGCM----------APECYKRTPISVKADVYGYGIVLLETICCWENMEIDAS 212
            AK L ++ G +          APE  KR       D++  GI+L   +  +       S
Sbjct: 171 FAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPS 230
Query: 213 K-PEEII 218
             PEEI+
Sbjct: 231 DTPEEIL 237

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 19/106 (17%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q V +   +A G+ YL    E   +H D+  +NIL++     K+SDFGL++ L +     
Sbjct: 119 QLVGMLRGIASGMRYL---AEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDP 175
Query: 174 --------------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                          APE       +  +D + YGIV+ E +   E
Sbjct: 176 TETSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGE 221

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 23/112 (20%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL---------AKLL 168
           V +   +A G+ YL       ++H D+  +N+L+ +    KISD GL          KLL
Sbjct: 148 VHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLL 204
Query: 169 SDKGC----MAPECYKRTPISVKADVYGYGIVL-------LETICCWENMEI 209
            +       MAPE       S+ +D++ YG+VL       L+  C + N ++
Sbjct: 205 GNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDV 256

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPEC---YKRTP 183
           GI +LH      I+H D+KP NI++    T KI DFGLA+       M P     Y R P
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 184 ISV-------KADVYGYGIVLLETI 201
             +         D++  G+++ E I
Sbjct: 195 EVILGMGYKENVDIWSVGVIMGEMI 219

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM 174
           +Q V+ ALD+A+G+ +LH   EP I    +  +++++DE  TA+IS   +       G M
Sbjct: 111 SQAVKFALDMARGMAFLH-TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRM 169
Query: 175 ------APECYKRTPISVK---ADVYGYGIVLLETIC 202
                 APE  ++ P       AD++ + ++L E + 
Sbjct: 170 YAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVT 206

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 23/112 (20%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL---------AKLL 168
           V +   +A G+ YL       ++H D+  +N+L+ +    KISD GL          KLL
Sbjct: 131 VHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLL 187
Query: 169 SDKGC----MAPECYKRTPISVKADVYGYGIVL-------LETICCWENMEI 209
            +       MAPE       S+ +D++ YG+VL       L+  C + N ++
Sbjct: 188 GNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDV 239

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 22/108 (20%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPE 177
           +++  D A G+ YL  +C    +H D+  +N L+ E    KISDFG+++  +D    A  
Sbjct: 216 LQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAASG 272
Query: 178 CYKRTPI-------------SVKADVYGYGIVLLETICCWENMEIDAS 212
             ++ P+             S ++DV+ +GI+L      WE   + AS
Sbjct: 273 GLRQVPVKWTAPEALNYGRYSSESDVWSFGILL------WETFSLGAS 314

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPEC---YKRTP 183
           GI +LH      I+H D+KP NI++    T KI DFGLA+       M P     Y R P
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 184 ISV-------KADVYGYGIVLLETI 201
             +         D++  G+++ E I
Sbjct: 195 EVILGMGYKENVDIWSVGVIMGEMI 219

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKISDFGLAKLLSDKG------- 172
           D++  + YLH   E  I+H D+KP+NI++    +    KI D G AK L D+G       
Sbjct: 129 DISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL-DQGELCTEFV 184
Query: 173 ----CMAPECYKRTPISVKADVYGYGIVLLETICCW 204
                +APE  ++   +V  D + +G +  E I  +
Sbjct: 185 GTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGF 220

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKISDFGLAKLLSDKG------- 172
           D++  + YLH   E  I+H D+KP+NI++    +    KI D G AK L D+G       
Sbjct: 130 DISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL-DQGELCTEFV 185
Query: 173 ----CMAPECYKRTPISVKADVYGYGIVLLETICCW 204
                +APE  ++   +V  D + +G +  E I  +
Sbjct: 186 GTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGF 221

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 22/108 (20%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-----KG 172
           +++  D A G+ YL  +C    +H D+  +N L+ E    KISDFG+++  +D      G
Sbjct: 216 LQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASG 272
Query: 173 CM--------APECYKRTPISVKADVYGYGIVLLETICCWENMEIDAS 212
            +        APE       S ++DV+ +GI+L      WE   + AS
Sbjct: 273 GLRQVPVKWTAPEALNYGRYSSESDVWSFGILL------WETFSLGAS 314

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 126 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 183 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 218

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 122 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 178
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 179 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 214

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 85  GSKPSTEAALDL-PWDLAYIIFCSAERNPYWNQRVRIAL-DVAKGILYLHDECEPPILHC 142
           G   S    LDL   DL  II  S    P   + VR  L  + +G+ Y+H      ++H 
Sbjct: 129 GEFKSVYVVLDLMESDLHQIIHSS---QPLTLEHVRYFLYQLLRGLKYMHSAQ---VIHR 182
Query: 143 DIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYK 180
           D+KP N+L++E    KI DFG+A+ L    C +P  ++
Sbjct: 183 DLKPSNLLVNENCELKIGDFGMARGL----CTSPAEHQ 216

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC--------- 173
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 130 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 186
Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 187 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 222

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 141 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 197
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 198 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 233

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 19/106 (17%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q V +   +A G+ YL D      +H  +  +NIL++     K+SDFGL++ L D     
Sbjct: 110 QLVGMLRGIAAGMKYLADMN---YVHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSDP 166
Query: 174 --------------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                          APE  +    +  +DV+ YGIV+ E +   E
Sbjct: 167 TYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGE 212

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 129 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 185
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 186 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 221

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 126 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 183 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 218

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL  +     +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 154 ICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 210
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 211 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 246

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----- 174
           +   + +G+ +LH      ++H D+KPQNIL+      K++DFGLA++ S +  +     
Sbjct: 125 MMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVV 181
Query: 175 -----APECYKRTPISVKADVYGYGIVLLE 199
                APE   ++  +   D++  G +  E
Sbjct: 182 TLWYRAPEVLLQSSYATPVDLWSVGCIFAE 211

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 126 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 183 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 218

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 123 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 179
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 180 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 215

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 141 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 197
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 198 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 233

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL  +     +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 127 ICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 183
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 184 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 219

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 128 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 184
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 185 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 220

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 121 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 177
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 178 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 213

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGCM-------- 174
           + KG+ YL        +H D+  +NIL++     KI DFGL K+L  DK           
Sbjct: 123 ICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 179
Query: 175 -----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                APE    +  SV +DV+ +G+VL E     E
Sbjct: 180 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 215

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGLAKLLSDK----- 171
           I   +  GI YLH   +  I+H DIKP+NIL++        KI DFGL+   S       
Sbjct: 151 IMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRD 207
Query: 172 --GC---MAPECYKRTPISVKADVYGYGIVLLETICCW 204
             G    +APE  K+   + K DV+  G+++   +C +
Sbjct: 208 RLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGY 244

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----- 174
           +   + +G+ +LH      ++H D+KPQNIL+      K++DFGLA++ S +  +     
Sbjct: 125 MMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVV 181
Query: 175 -----APECYKRTPISVKADVYGYGIVLLE 199
                APE   ++  +   D++  G +  E
Sbjct: 182 TLWYRAPEVLLQSSYATPVDLWSVGCIFAE 211

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPEC---YKRTP 183
           GI +LH      I+H D+KP NI++    T KI DFGLA+       M PE    Y R P
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPEVVTRYYRAP 194
Query: 184 ISV-------KADVYGYGIVLLETI 201
             +         D++  G ++ E I
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 85  GSKPSTEAALDL-PWDLAYIIFCSAERNPYWNQRVRIAL-DVAKGILYLHDECEPPILHC 142
           G   S    LDL   DL  II  S    P   + VR  L  + +G+ Y+H      ++H 
Sbjct: 130 GEFKSVYVVLDLMESDLHQIIHSS---QPLTLEHVRYFLYQLLRGLKYMHSAQ---VIHR 183
Query: 143 DIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYK 180
           D+KP N+L++E    KI DFG+A+ L    C +P  ++
Sbjct: 184 DLKPSNLLVNENCELKIGDFGMARGL----CTSPAEHQ 217

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----- 174
           +   + +G+ +LH      ++H D+KPQNIL+      K++DFGLA++ S +  +     
Sbjct: 125 MMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVV 181
Query: 175 -----APECYKRTPISVKADVYGYGIVLLE 199
                APE   ++  +   D++  G +  E
Sbjct: 182 TLWYRAPEVLLQSSYATPVDLWSVGCIFAE 211

>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 120 IALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------KG 172
            +  VAKG+ +L  + C    +H D+  +NIL+      KI DFGLA+ + +      KG
Sbjct: 173 FSYQVAKGMAFLASKNC----IHRDLAARNILLTHGRITKICDFGLARHIKNDSNYVVKG 228
Query: 173 C-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK 225
                   MAPE       + ++DV+ YGI L      WE   + +S    + + +  YK
Sbjct: 229 NARLPVKWMAPESIFNCVYTFESDVWSYGIFL------WELFSLGSSPYPGMPVDSKFYK 282
Query: 226 CFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               +E  +++   E     + +++K    C   +P  RP+ K +V ++
Sbjct: 283 MI--KEGFRML-SPEHAPAEMYDIMKT---CWDADPLKRPTFKQIVQLI 325

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 28/136 (20%)
Query: 90  TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGIL----YLHDECEPPILHCDIK 145
           TE +L L       +F       Y+++R   A D  K IL    YLH   E  I+H D+K
Sbjct: 121 TEISLVLELVTGGELFDRIVEKGYYSER--DAADAVKQILEAVAYLH---ENGIVHRDLK 175
Query: 146 PQNILMDEFWTA------KISDFGLAKLLSDK----------GCMAPECYKRTPISVKAD 189
           P+N+L   + T       KI+DFGL+K++  +          G  APE  +      + D
Sbjct: 176 PENLL---YATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVD 232
Query: 190 VYGYGIVLLETICCWE 205
           ++  GI+    +C +E
Sbjct: 233 MWSVGIITYILLCGFE 248

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 24/112 (21%)
Query: 101 AYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTA 157
           A  ++  A  + Y  Q       + + + Y HD     I+H D+KP  +L+   +     
Sbjct: 125 AGFVYSEAVASHYMRQ-------ILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPV 174
Query: 158 KISDFGLAKLLSDKGC-----------MAPECYKRTPISVKADVYGYGIVLL 198
           K+  FG+A  L + G            MAPE  KR P     DV+G G++L 
Sbjct: 175 KLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILF 226

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
             + +G+ Y H +    +LH D+KPQN+L++E    K++DFGLA+
Sbjct: 107 FQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLAR 148

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
           Q V  A +++ G+ +LH      I++ D+K  N+++D     KI+DFG+ K     G   
Sbjct: 121 QAVFYAAEISIGLFFLHKRG---IIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDGVTT 177
Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLETIC 202
                    +APE     P     D + YG++L E + 
Sbjct: 178 REFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLA 215

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL +      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 148 QLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAT 204
Query: 171 ----KGCM-----APECYKRTPISVKADVYGYGIVLLETICCWE 205
                G +     APE       +  +DV+ +GIV+ E +   E
Sbjct: 205 YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGE 248

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---------- 173
           V+ G+ YL    E   +H ++  +N+L+     AKISDFGL+K L               
Sbjct: 445 VSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKW 501
Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPE 215
                APEC      S ++DV+ YG+ + E +   +        PE
Sbjct: 502 PLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE 547

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLAKLL        ++ G 
Sbjct: 158 VQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK 214
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                MA E       + ++DV+ YG+ +      WE M    SKP + I
Sbjct: 215 VPIKWMALESILHRIYTHQSDVWSYGVTV------WELMTF-GSKPYDGI 257

>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C-kit Tyrosine Kinase Length = 313

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 120 IALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------KG 172
            +  VAKG+ +L  + C    +H D+  +NIL+      KI DFGLA+ + +      KG
Sbjct: 150 FSYQVAKGMAFLASKNC----IHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKG 205
Query: 173 C-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK 225
                   MAPE       + ++DV+ YGI L      WE   + +S    + + +  YK
Sbjct: 206 NARLPVKWMAPESIFNCVYTFESDVWSYGIFL------WELFSLGSSPYPGMPVDSKFYK 259
Query: 226 CFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               +E  +++   E     + +++K    C   +P  RP+ K +V ++
Sbjct: 260 MI--KEGFRML-SPEHAPAEMYDIMKT---CWDADPLKRPTFKQIVQLI 302

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 24/112 (21%)
Query: 101 AYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTA 157
           A  ++  A  + Y  Q       + + + Y HD     I+H D+KP  +L+   +     
Sbjct: 123 AGFVYSEAVASHYMRQ-------ILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPV 172
Query: 158 KISDFGLAKLLSDKGC-----------MAPECYKRTPISVKADVYGYGIVLL 198
           K+  FG+A  L + G            MAPE  KR P     DV+G G++L 
Sbjct: 173 KLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILF 224

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-------- 171
           + L V + +  LH +    ++H DIK  +IL+      K+SDFG    +S +        
Sbjct: 252 VCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLV 308
Query: 172 GC---MAPECYKRTPISVKADVYGYGIVLLETI 201
           G    MAPE   R P   + D++  GI+++E +
Sbjct: 309 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMV 341

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           +  +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+ +        K
Sbjct: 151 IXYSFQVAKGMEFL---ASRKXIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRK 207
Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
           G        MAPE       ++++DV+ +G++L      WE   + AS    + +     
Sbjct: 208 GDARLPLKWMAPETIFDRVYTIQSDVWSFGVLL------WEIFSLGASPYPGVKIDEEF- 260
Query: 225 KCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
            C   R L +  R    D    E + +  L C   EP+ RP+   +V  L
Sbjct: 261 -C---RRLKEGTRMRAPDYTTPE-MYQTMLDCWHGEPSQRPTFSELVEHL 305

>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C- Kit Tyrosine Kinase Length = 331

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 120 IALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------KG 172
            +  VAKG+ +L  + C    +H D+  +NIL+      KI DFGLA+ + +      KG
Sbjct: 168 FSYQVAKGMAFLASKNC----IHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKG 223
Query: 173 C-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK 225
                   MAPE       + ++DV+ YGI L      WE   + +S    + + +  YK
Sbjct: 224 NARLPVKWMAPESIFNCVYTFESDVWSYGIFL------WELFSLGSSPYPGMPVDSKFYK 277
Query: 226 CFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               +E  +++   E     + +++K    C   +P  RP+ K +V ++
Sbjct: 278 MI--KEGFRML-SPEHAPAEMYDIMKT---CWDADPLKRPTFKQIVQLI 320

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 17/87 (19%)
Query: 124 VAKGILYLHDECEPPILHCDIKPQNI-LMDE---FWTAKISDFGLAKLLSDK-------- 171
           +  G+ YLH +    I H D+KP+NI L+D+       K+ DFGLA  + D         
Sbjct: 124 ILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFG 180
Query: 172 --GCMAPECYKRTPISVKADVYGYGIV 196
               +APE     P+ ++AD++  G++
Sbjct: 181 TPEFVAPEIVNYEPLGLEADMWSIGVI 207

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 26/107 (24%)
Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------- 170
           + I L +A+ + +LH +    ++H D+KP NI        K+ DFGL   +         
Sbjct: 121 LHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTV 177
Query: 171 ----------------KGCMAPECYKRTPISVKADVYGYGIVLLETI 201
                           K  M+PE       S K D++  G++L E +
Sbjct: 178 LTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL 224

>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex Length = 329

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 120 IALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------KG 172
            +  VAKG+ +L  + C    +H D+  +NIL+      KI DFGLA+ + +      KG
Sbjct: 166 FSYQVAKGMAFLASKNC----IHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKG 221
Query: 173 C-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK 225
                   MAPE       + ++DV+ YGI L      WE   + +S    + + +  YK
Sbjct: 222 NARLPVKWMAPESIFNCVYTFESDVWSYGIFL------WELFSLGSSPYPGMPVDSKFYK 275
Query: 226 CFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               +E  +++   E     + +++K    C   +P  RP+ K +V ++
Sbjct: 276 MI--KEGFRML-SPEHAPAEMYDIMKT---CWDADPLKRPTFKQIVQLI 318

>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 120 IALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------KG 172
            +  VAKG+ +L  + C    +H D+  +NIL+      KI DFGLA+ + +      KG
Sbjct: 173 FSYQVAKGMAFLASKNC----IHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKG 228
Query: 173 C-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK 225
                   MAPE       + ++DV+ YGI L      WE   + +S    + + +  YK
Sbjct: 229 NARLPVKWMAPESIFNCVYTFESDVWSYGIFL------WELFSLGSSPYPGMPVDSKFYK 282
Query: 226 CFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               +E  +++   E     + +++K    C   +P  RP+ K +V ++
Sbjct: 283 MI--KEGFRML-SPEHAPAEMYDIMKT---CWDADPLKRPTFKQIVQLI 325

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLAKLL        ++ G 
Sbjct: 131 VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK 187
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                MA E       + ++DV+ YG+ +      WE M    SKP + I
Sbjct: 188 VPIKWMALESILHRIYTHQSDVWSYGVTV------WELMTF-GSKPYDGI 230

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLAKLL        ++ G 
Sbjct: 131 VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK 187
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                MA E       + ++DV+ YG+ +      WE M    SKP + I
Sbjct: 188 VPIKWMALESILHRIYTHQSDVWSYGVTV------WELMTF-GSKPYDGI 230

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLAKLL        ++ G 
Sbjct: 124 VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK 180
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                MA E       + ++DV+ YG+ +      WE M    SKP + I
Sbjct: 181 VPIKWMALESILHRIYTHQSDVWSYGVTV------WELMTF-GSKPYDGI 223

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLAKLL        ++ G 
Sbjct: 118 VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK 174
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                MA E       + ++DV+ YG+ +      WE M    SKP + I
Sbjct: 175 VPIKWMALESILHRIYTHQSDVWSYGVTV------WELMTF-GSKPYDGI 217

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLAKLL        ++ G 
Sbjct: 124 VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK 180
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                MA E       + ++DV+ YG+ +      WE M    SKP + I
Sbjct: 181 VPIKWMALESILHRIYTHQSDVWSYGVTV------WELMTF-GSKPYDGI 223

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLAKLL        ++ G 
Sbjct: 131 VQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK 187
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                MA E       + ++DV+ YG+ +      WE M    SKP + I
Sbjct: 188 VPIKWMALESILHRIYTHQSDVWSYGVTV------WELMTF-GSKPYDGI 230

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLAKLL        ++ G 
Sbjct: 134 VQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK 190
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                MA E       + ++DV+ YG+ +      WE M    SKP + I
Sbjct: 191 VPIKWMALESILHRIYTHQSDVWSYGVTV------WELMTF-GSKPYDGI 233

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLAKLL        ++ G 
Sbjct: 124 VQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK 180
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                MA E       + ++DV+ YG+ +      WE M    SKP + I
Sbjct: 181 VPIKWMALESILHRIYTHQSDVWSYGVTV------WELMTF-GSKPYDGI 223

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 122 LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--------SDKGC 173
           + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLAKLL        ++ G 
Sbjct: 125 VQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK 181
Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                MA E       + ++DV+ YG+ +      WE M    SKP + I
Sbjct: 182 VPIKWMALESILHRIYTHQSDVWSYGVTV------WELMTF-GSKPYDGI 224

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-61
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	3e-51
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	8e-50
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-37
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	8e-35
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	8e-35
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-32
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-31
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	8e-31
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-30
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	3e-29
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-28
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-28
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	3e-28
3q4u_A	301	Activin receptor type-1; structural genomics conso	3e-28
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-27
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	3e-27
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-26
2a19_B	284	Interferon-induced, double-stranded RNA-activated	5e-17
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	7e-17
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-16
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	2e-16
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	3e-16
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	6e-16
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	6e-16
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-15
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-15
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-15
3ork_A	311	Serine/threonine protein kinase; structural genomi	2e-15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-15
3fme_A	290	Dual specificity mitogen-activated protein kinase;	9e-15
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-14
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-14
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-14
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-14
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	3e-14
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-14
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	4e-14
2dyl_A	318	Dual specificity mitogen-activated protein kinase	6e-14
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	8e-14
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	8e-14
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	8e-14
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-13
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-13
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-13
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-13
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	7e-13
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	8e-13
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-12
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-12
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-12
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-12
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-12
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	3e-12
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-12
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-11
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-11
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-11
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-11
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-11
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-11
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-11
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	4e-11
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	5e-11
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	5e-11
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	5e-11
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	6e-11
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	6e-11
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	6e-11
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	6e-11
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	7e-11
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	7e-11
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	7e-11
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	8e-11
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-10
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-10
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	1e-10
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-10
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	1e-10
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-10
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-10
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-10
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-10
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-10
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-10
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	3e-10
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	3e-10
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	3e-10
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	3e-10
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	3e-10
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	4e-10
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	4e-10
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	4e-10
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	4e-10
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	4e-10
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-10
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	5e-10
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	5e-10
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	6e-10
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	6e-10
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	6e-10
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	6e-10
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	6e-10
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	6e-10
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	7e-10
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	7e-10
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-09
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-09
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-09
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	2e-09
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-09
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-09
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-09
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-09
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	2e-09
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-09
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	3e-09
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	3e-09
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	4e-09
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	4e-09
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	4e-09
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	4e-09
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	4e-09
4aoj_A	329	High affinity nerve growth factor receptor; transf	4e-09
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	4e-09
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	4e-09
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	4e-09
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	5e-09
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	5e-09
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	5e-09
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	6e-09
3o0g_A	292	Cell division protein kinase 5; kinase activator c	6e-09
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	6e-09
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	6e-09
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	6e-09
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	6e-09
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	7e-09
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	7e-09
3niz_A	311	Rhodanese family protein; structural genomics, str	8e-09
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	8e-09
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	8e-09
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	8e-09
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	9e-09
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	9e-09
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-08
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	1e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-08
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	1e-08
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	1e-08
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	1e-08
3uqc_A	286	Probable conserved transmembrane protein; structur	2e-08
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-08
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	2e-08
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	2e-08
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-08
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	2e-08
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-08
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-08
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-08
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	2e-08
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	3e-08
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	3e-08
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	3e-08
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	3e-08
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	3e-08
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	4e-08
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	4e-08
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	4e-08
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	4e-08
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	4e-08
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	5e-08
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	5e-08
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	6e-08
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	6e-08
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	7e-08
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	7e-08
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	8e-08
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	8e-08
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	8e-08
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	9e-08
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	9e-08
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	9e-08
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	9e-08
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	1e-07
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	1e-07
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-07
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-07
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-07
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-07
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	2e-07
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-07
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-07
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-07
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-07
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	2e-07
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	3e-07
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	3e-07
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	5e-07
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	7e-07
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	7e-07
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	7e-07
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	9e-07
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-06
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	1e-06
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	1e-06
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	1e-06
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	2e-06
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-06
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-06
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-06
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	3e-06
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	4e-06
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	5e-06
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	5e-06
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	5e-06
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	6e-06
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	7e-06
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	7e-06
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-05
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	3e-05
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	4e-05
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	6e-05
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	6e-05
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	1e-04
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	2e-04
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	2e-04
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	2e-04
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	5e-04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	5e-04
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	5e-04
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  196 bits (500), Expect = 1e-61
 Identities = 71/195 (36%), Positives = 100/195 (51%), Gaps = 22/195 (11%)

Query: 100 LAYIIFCSAERNPY--WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 157
           +A  +    E  P   W +R RIAL  A+G+ YLHD C+P I+H D+K  NIL+DE + A
Sbjct: 114 VASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEA 173

Query: 158 KISDFGLAKLLSDK------------GCMAPECYKRTPISVKADVYGYGIVLLETICCWE 205
            + DFGLAKL+  K            G +APE       S K DV+GYG++LLE I    
Sbjct: 174 VVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQR 233

Query: 206 NMEIDASKP---EEIILTNWVYKCFINRELNKLV---RGTEVDKKNLENLVKVGLWCVQD 259
               D ++    ++++L +WV      ++L  LV          + +E L++V L C Q 
Sbjct: 234 A--FDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQS 291

Query: 260 EPALRPSMKCVVMML 274
            P  RP M  VV ML
Sbjct: 292 SPMERPKMSEVVRML 306

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  168 bits (429), Expect = 3e-51
 Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 24/192 (12%)

Query: 100 LAYIIFCSAERNP-YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
           L   + C     P  W+ R +IA   A GI +LH+      +H DIK  NIL+DE +TAK
Sbjct: 117 LLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENH---HIHRDIKSANILLDEAFTAK 173

Query: 159 ISDFGLAKLLSDK-------------GCMAPECYKRTPISVKADVYGYGIVLLETICCWE 205
           ISDFGLA+                    MAPE   R  I+ K+D+Y +G+VLLE I    
Sbjct: 174 ISDFGLARASEKFAQTVMTSRIVGTTAYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLP 232

Query: 206 NMEIDASKPEEIILTNWVYKCFIN-RELNKLV--RGTEVDKKNLENLVKVGLWCVQDEPA 262
              +D  +  +++L     +     + +   +  +  + D  ++E +  V   C+ ++  
Sbjct: 233 A--VDEHREPQLLLD-IKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKN 289

Query: 263 LRPSMKCVVMML 274
            RP +K V  +L
Sbjct: 290 KRPDIKKVQQLL 301

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  165 bits (421), Expect = 8e-50
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 24/179 (13%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
           W QR+ I +  A+G+ YLH      I+H D+K  NIL+DE +  KI+DFG++K  ++   
Sbjct: 138 WEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQ 194

Query: 172 -----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKP-EEIIL 219
                      G + PE + +  ++ K+DVY +G+VL E +C      I  S P E + L
Sbjct: 195 THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSA--IVQSLPREMVNL 252

Query: 220 TNWVYKCFINRELNKLV----RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
             W  +   N +L ++V       ++  ++L       + C+      RPSM  V+  L
Sbjct: 253 AEWAVESHNNGQLEQIVDPNLAD-KIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL 310

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  133 bits (337), Expect = 2e-37
 Identities = 43/195 (22%), Positives = 72/195 (36%), Gaps = 35/195 (17%)

Query: 114 WNQRVRIALDVAKGILYLHDE-------CEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           WN+   IA  +A+G+ YLH++        +P I H DIK +N+L+    TA I+DFGLA 
Sbjct: 120 WNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLAL 179

Query: 167 LLSD-------------KGCMAPE-----CYKRTPISVKADVYGYGIVLLETICCWENME 208
                            +  MAPE        +    ++ D+Y  G+VL E        +
Sbjct: 180 KFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAAD 239

Query: 209 IDASKPEEIILTNWVYKCFINRELNKLV---------RGTEVDKKNLENLVKVGLWCVQD 259
                   +     + +     ++ ++V         R        +  L +    C   
Sbjct: 240 GPV-DEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDH 298

Query: 260 EPALRPSMKCVVMML 274
           +   R S  CV   +
Sbjct: 299 DAEARLSAGCVGERI 313

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  126 bits (318), Expect = 8e-35
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 27/173 (15%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-AKISDFGLAKLL---- 168
               +   L  ++G+ YLH      ++H D+KP N+L+    T  KI DFG A  +    
Sbjct: 101 AAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHM 160

Query: 169 -SDKGC---MAPECYKRTPISVKADVYGYGIVLLETICC---WENMEIDASKPEEIILTN 221
            ++KG    MAPE ++ +  S K DV+ +GI+L E I     ++ +   A +    +   
Sbjct: 161 TNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNG 220

Query: 222 WVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
                       +      + K  +E+L+     C   +P+ RPSM+ +V ++
Sbjct: 221 T-----------RPPLIKNLPKP-IESLMT---RCWSKDPSQRPSMEEIVKIM 258

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  126 bits (318), Expect = 8e-35
 Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 31/175 (17%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
             +R+ +A DVAKG+ YLH    PPI+H ++K  N+L+D+ +T K+ DFGL++L +    
Sbjct: 136 ERRRLSMAYDVAKGMNYLH-NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFL 194

Query: 174 -----------MAPECYKRTPISVKADVYGYGIVLLETICC---WENMEIDASKPEEIIL 219
                      MAPE  +  P + K+DVY +G++L E       W N+      P +++ 
Sbjct: 195 SSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLN-----PAQVVA 249

Query: 220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
                   +  +  +L     ++ + +  +++    C  +EP  RPS   ++ +L
Sbjct: 250 A-------VGFKCKRLEIPRNLNPQ-VAAIIE---GCWTNEPWKRPSFATIMDLL 293

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  119 bits (300), Expect = 2e-32
 Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 47/182 (25%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
            +Q V+ ALD+A+G+ +LH   EP I    +  +++++DE  TA+IS   +       G 
Sbjct: 110 QSQAVKFALDMARGMAFLHT-LEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGR 168

Query: 174 ------MAPECYKRTPISV---KADVYGYGIVLLETICC---WENMEIDASKPEEIILTN 221
                 +APE  ++ P       AD++ + ++L E +     + ++        EI +  
Sbjct: 169 MYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADL-----SNMEIGM-- 221

Query: 222 WVYKCFINRELNKLVRGTEVDKKNL---------ENLVKVGLWCVQDEPALRPSMKCVVM 272
                             +V  + L          ++ K+   C+ ++PA RP    +V 
Sbjct: 222 ------------------KVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVP 263

Query: 273 ML 274
           +L
Sbjct: 264 IL 265

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  116 bits (294), Expect = 2e-31
 Identities = 45/190 (23%), Positives = 71/190 (37%), Gaps = 54/190 (28%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF--------WTAKISDFGLA 165
            +  V  A+ +A+G+ YLHDE   PI+H D+K  NIL+ +            KI+DFGLA
Sbjct: 104 PDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA 163

Query: 166 KLLSDKGC---------MAPECYKRTPISVKADVYGYGIVLLETICC---WENMEIDASK 213
           +                MAPE  + +  S  +DV+ YG++L E +     +  ++     
Sbjct: 164 REWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGID----- 218

Query: 214 PEEIILTNWVYKCFINRELNKLVRGTEVDKKNL---------ENLVKVGLWCVQDEPALR 264
              +                       V    L         E   K+   C   +P  R
Sbjct: 219 GLAVAY--------------------GVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHSR 258

Query: 265 PSMKCVVMML 274
           PS   ++  L
Sbjct: 259 PSFTNILDQL 268

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  115 bits (289), Expect = 8e-31
 Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 33/179 (18%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-----TAKISDFGLAKLL 168
           W+ ++R+ LD+A GI Y+ +   PPI+H D++  NI +          AK++DFGL++  
Sbjct: 121 WSVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQS 179

Query: 169 -----SDKGC---MAPE--CYKRTPISVKADVYGYGIVLLETICC---WENMEIDASKPE 215
                   G    MAPE    +    + KAD Y + ++L   +     ++          
Sbjct: 180 VHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEY-----SYG 234

Query: 216 EIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
           +I   N +                 + +     L  V   C   +P  RP    +V  L
Sbjct: 235 KIKFINMI--REEGLRP-------TIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKEL 284

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  115 bits (289), Expect = 2e-30
 Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 43/204 (21%)

Query: 114 WNQRVRIALDVAKGILYLHDE------CEPPILHCDIKPQNILMDEFWTAKISDFGLAKL 167
           W    R+A  V +G+ YLH E       +P I H D+  +N+L+    T  ISDFGL+  
Sbjct: 110 WVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMR 169

Query: 168 LSDKGC-------------------MAPE-------CYKRTPISVKADVYGYGIVLLETI 201
           L+                       MAPE                + D+Y  G++  E  
Sbjct: 170 LTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIF 229

Query: 202 C-CWENMEIDASKPEEIILTNWVYKCFINRELNKLV----------RGTEVDKKNLENLV 250
             C +    ++    ++     V       ++  LV             + +   + +L 
Sbjct: 230 MRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLK 289

Query: 251 KVGLWCVQDEPALRPSMKCVVMML 274
           +    C   +   R + +     +
Sbjct: 290 ETIEDCWDQDAEARLTAQXAEERM 313

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  109 bits (275), Expect = 1e-28
 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 34/180 (18%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
             + + IA   A+G+ YLH      I+H D+K  NI + E  T KI DFGLA   S    
Sbjct: 119 MKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175

Query: 174 -------------MAPECYK---RTPISVKADVYGYGIVLLETICC---WENMEIDASKP 214
                        MAPE  +     P S ++DVY +GIVL E +     + N+       
Sbjct: 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNI-----NN 230

Query: 215 EEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
            + I+         +   +     +   K+    + ++   C++ +   RPS   ++  +
Sbjct: 231 RDQIIEMVGRG---SLSPDLSKVRSNCPKR----MKRLMAECLKKKRDERPSFPRILAEI 283

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  108 bits (273), Expect = 3e-28
 Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 48/189 (25%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
            N+  +IA ++ KG+ YLH      ILH D+K +N+  D      I+DFGL  +      
Sbjct: 129 VNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYDN-GKVVITDFGLFSISGVLQA 184

Query: 174 ----------------MAPECYKRT---------PISVKADVYGYGIVLLETICC---WE 205
                           +APE  ++          P S  +DV+  G +  E       ++
Sbjct: 185 GRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFK 244

Query: 206 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRP 265
                    E II   W         +   ++         + +  + L+C   E   RP
Sbjct: 245 TQP-----AEAII---WQ--------MGTGMKPNLSQIGMGKEISDILLFCWAFEQEERP 288

Query: 266 SMKCVVMML 274
           +   ++ ML
Sbjct: 289 TFTKLMDML 297

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  108 bits (272), Expect = 3e-28
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 33/194 (17%)

Query: 114 WNQRVRIALDVAKGILYLHDE-----CEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
               +RI L +A G+ +LH E      +P I H D+K +NIL+ +     I+D GLA + 
Sbjct: 104 TVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMH 163

Query: 169 SDKGC---------------MAPECYKRTPISV------KADVYGYGIVLLETI-CCWEN 206
           S                   MAPE    T          + D++ +G+VL E       N
Sbjct: 164 SQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSN 223

Query: 207 MEIDASKP--EEIILTNWVYKCFINRELNKLVR----GTEVDKKNLENLVKVGLWCVQDE 260
             ++  KP   +++  +  ++           R            L +L K+   C    
Sbjct: 224 GIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQN 283

Query: 261 PALRPSMKCVVMML 274
           P+ R +   +   L
Sbjct: 284 PSARLTALRIKKTL 297

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  107 bits (269), Expect = 1e-27
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 49/202 (24%)

Query: 114 WNQRVRIALDVAKGILYLHDE-----CEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
               +++A     G+ +LH E      +P I H D+K +NIL+ +  T  I+D GLA   
Sbjct: 133 AKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKF 192

Query: 169 SDKGC---------------MAPE------CYKRTPISVKADVYGYGIVLLETICC---- 203
                               M PE              + AD+Y +G++L E        
Sbjct: 193 ISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSG 252

Query: 204 ---------WENMEIDASKPEEIILTNWVYKCFINR--ELNKLVRGTEVDKKNLENLVKV 252
                    + ++    S P    +   V  C               E  ++ +  L+  
Sbjct: 253 GIVEEYQLPYHDL--VPSDPSYEDMREIV--CIKKLRPSFPNRWSSDECLRQ-MGKLMT- 306

Query: 253 GLWCVQDEPALRPSMKCVVMML 274
              C    PA R +   V   L
Sbjct: 307 --ECWAHNPASRLTALRVKKTL 326

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  106 bits (267), Expect = 3e-27
 Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 37/196 (18%)

Query: 114 WNQRVRIALDVAKGILYLHDE-----CEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
               +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I+D GLA   
Sbjct: 138 VEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 197

Query: 169 SDKGC---------------MAPE------CYKRTPISVKADVYGYGIVLLETICCWENM 207
                               MAPE        K      +AD+Y  G+V  E        
Sbjct: 198 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIG 257

Query: 208 EIDASKPEEIILTNWVYKCFINRELNKLV---------RGTEVDKKNLENLVKVGLWCVQ 258
            I   +  ++   + V       E+ K+V                + L  + K+   C  
Sbjct: 258 GI--HEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWY 315

Query: 259 DEPALRPSMKCVVMML 274
              A R +   +   L
Sbjct: 316 ANGAARLTALRIKKTL 331

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  103 bits (260), Expect = 2e-26
 Identities = 46/192 (23%), Positives = 66/192 (34%), Gaps = 52/192 (27%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
           W+QRV  A D+A G+ YLH      I+H D+   N L+ E     ++DFGLA+L+ D+  
Sbjct: 107 WSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT 163

Query: 174 -------------------------MAPECYKRTPISVKADVYGYGIVLLETICC---WE 205
                                    MAPE         K DV+ +GIVL E I       
Sbjct: 164 QPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADP 223

Query: 206 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGT---EVDKKNLENLVKVGLWCVQDEPA 262
           +                        +    VRG            +   + + C   +P 
Sbjct: 224 DYL------------------PRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPE 265

Query: 263 LRPSMKCVVMML 274
            RPS   +   L
Sbjct: 266 KRPSFVKLEHWL 277

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 77.7 bits (192), Expect = 5e-17
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 36/162 (22%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
            +   + KG+ Y+H +    +++ D+KP NI + +    KI DFGL   L + G      
Sbjct: 126 ELFEQITKGVDYIHSKK---LINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSK 182

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI 228
                M+PE         + D+Y  G++L E +              E            
Sbjct: 183 GTLRYMSPEQISSQDYGKEVDLYALGLILAELLHV-------CDTAFE-----------T 224

Query: 229 NRELNKLVRGTEVDK--KNLENLVKVGLWCVQDEPALRPSMK 268
           ++    L  G   D   K  + L++     +  +P  RP+  
Sbjct: 225 SKFFTDLRDGIISDIFDKKEKTLLQ---KLLSKKPEDRPNTS 263

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 77.4 bits (191), Expect = 7e-17
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKISDFGLAKLLSDKGC---- 173
                + KG+ +LH    PPI+H D+K  NI +     + KI D GLA L          
Sbjct: 133 SWCRQILKGLQFLH-TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVI 191

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLE 199
                MAPE Y+        DVY +G+ +LE
Sbjct: 192 GTPEFMAPEMYEE-KYDESVDVYAFGMCMLE 221

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 35/164 (21%), Positives = 57/164 (34%), Gaps = 42/164 (25%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
               D    + +LH +    ++H D+KP NI +      K+ DFGL   L   G      
Sbjct: 161 GYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQE 217

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI 228
                MAPE   +      ADV+  G+ +LE  C  E        P              
Sbjct: 218 GDPRYMAPELL-QGSYGTAADVFSLGLTILEVACNME-------LP------------HG 257

Query: 229 NRELNKLVRGTEVDK------KNLENLVKVGLWCVQDEPALRPS 266
                +L +G    +        L +++      ++ +P LR +
Sbjct: 258 GEGWQQLRQGYLPPEFTAGLSSELRSVLV---MMLEPDPKLRAT 298

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 76.5 bits (189), Expect = 2e-16
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 15/94 (15%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---- 173
           V I   +   +   H        H D+KP+NIL+     A + DFG+A   +D+      
Sbjct: 137 VAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLG 193

Query: 174 --------MAPECYKRTPISVKADVYGYGIVLLE 199
                   MAPE +  +  + +AD+Y    VL E
Sbjct: 194 NTVGTLYYMAPERFSESHATYRADIYALTCVLYE 227

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 75.7 bits (187), Expect = 3e-16
 Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 15/98 (15%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
            +  +     +  GI + HD     I+H DIKPQNIL+D   T KI DFG+AK LS+   
Sbjct: 110 VDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSL 166

Query: 174 ------------MAPECYKRTPISVKADVYGYGIVLLE 199
                        +PE  K        D+Y  GIVL E
Sbjct: 167 TQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYE 204

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 75.8 bits (187), Expect = 6e-16
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 35/175 (20%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
             +++  D A G+ YL  +     +H D+  +N L+ E    KISDFG+++  +D     
Sbjct: 214 TLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAA 270

Query: 171 -KGC-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW 222
             G         APE       S ++DV+ +GI+L      WE      + P        
Sbjct: 271 SGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILL------WETFS-LGASP-------- 315

Query: 223 VYKCFINRE-LNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
            Y    N++    + +G  +    L  + + ++   C   EP  RPS   +   L
Sbjct: 316 -YPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQEL 369

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 75.3 bits (185), Expect = 6e-16
 Identities = 42/288 (14%), Positives = 73/288 (25%), Gaps = 71/288 (24%)

Query: 27  SSLNDRNSPRSKSVWS----CMRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVA 82
           + L      R  + W                    S    L+S     + +  I      
Sbjct: 59  AKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPF 118

Query: 83  MRGSKPSTEAALDLPWDLAYII--FCS--------AERNPYWNQRVRIALD----VAKGI 128
              +             L YI    C           R    ++   + L     +A+ +
Sbjct: 119 STKNTVGQLQPSSPKVYL-YIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAV 177

Query: 129 LYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC--------------- 173
            +LH +    ++H D+KP NI        K+ DFGL   +                    
Sbjct: 178 EFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHT 234

Query: 174 --------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK 225
                   M+PE       S K D++  G++L E       +    S   E +       
Sbjct: 235 GQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFE-------LLYSFSTQMERVRI----- 282

Query: 226 CFINRELNKLVRGT-----EVDKKNLENLVKVGLWCVQDEPALRPSMK 268
                 +  +                  +V+     +   P  RP   
Sbjct: 283 ------ITDVRNLKFPLLFTQKYPQEHMMVQ---DMLSPSPTERPEAT 321

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 16/114 (14%)

Query: 99  DLAYIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 156
           DL+ +I    ++     +R   +  + +   + ++H      ++H DIKP N+ +     
Sbjct: 118 DLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGV 174

Query: 157 AKISDFGLAKLLSDKGC-----------MAPECYKRTPISVKADVYGYGIVLLE 199
            K+ D GL +  S K             M+PE       + K+D++  G +L E
Sbjct: 175 VKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYE 228

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 74.9 bits (184), Expect = 1e-15
 Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 11/90 (12%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK------G 172
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++  L D       G
Sbjct: 135 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 192

Query: 173 C---MAPECYKRTPISVKADVYGYGIVLLE 199
               M+PE  + T  SV++D++  G+ L+E
Sbjct: 193 TRSYMSPERLQGTHYSVQSDIWSMGLSLVE 222

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 16/120 (13%)

Query: 99  DLAYIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDEF 154
           DLA +I    +   Y ++    R+   +   +   H   +    +LH D+KP N+ +D  
Sbjct: 93  DLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGK 152

Query: 155 WTAKISDFGLAKLLSDKGC-----------MAPECYKRTPISVKADVYGYGIVLLETICC 203
              K+ DFGLA++L+               M+PE   R   + K+D++  G +L E +C 
Sbjct: 153 QNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYE-LCA 211

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 17/96 (17%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---- 173
           + +  D  + + + H   +  I+H D+KP NI++      K+ DFG+A+ ++D G     
Sbjct: 119 IEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQ 175

Query: 174 ----------MAPECYKRTPISVKADVYGYGIVLLE 199
                     ++PE  +   +  ++DVY  G VL E
Sbjct: 176 TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYE 211

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 73.7 bits (181), Expect = 6e-15
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 12/93 (12%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
             + +   L++   + YLH      +++ D+KP+NI++ E    K+ D G    ++  G 
Sbjct: 181 VAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSFGY 236

Query: 174 -------MAPECYKRTPISVKADVYGYGIVLLE 199
                   APE  +  P +V  D+Y  G  L  
Sbjct: 237 LYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAA 268

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 71.5 bits (176), Expect = 9e-15
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 16/95 (16%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK------- 171
           +IA+ + K + +LH +    ++H D+KP N+L++     K+ DFG++  L D        
Sbjct: 113 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDA 170

Query: 172 GC---MAPE----CYKRTPISVKADVYGYGIVLLE 199
           GC   MAPE       +   SVK+D++  GI ++E
Sbjct: 171 GCKPYMAPERINPELNQKGYSVKSDIWSLGITMIE 205

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 72.0 bits (176), Expect = 1e-14
 Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 21/114 (18%)

Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           S  ++   + R+++ L V + +  LH      ++H  ++P +I++D+     ++ F    
Sbjct: 198 STHKSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLV 254

Query: 167 LLSDK-------GCMAPE-----------CYKRTPISVKADVYGYGIVLLETIC 202
               +       G   PE             +RT ++   D +  G+V+    C
Sbjct: 255 RDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWC 308

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 34/172 (19%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---- 173
           V +A  +A G+ Y+        +H D++  NIL+ E    K++DFGLA+L+ D       
Sbjct: 283 VDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 339

Query: 174 --------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK 225
                    APE       ++K+DV+ +GI+L       E        P         Y 
Sbjct: 340 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILL------TELTTK-GRVP---------YP 383

Query: 226 CFINRE-LNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
             +NRE L+++ RG  +       E+L  +   C + EP  RP+ + +   L
Sbjct: 384 GMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFL 435

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 34/172 (19%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           + +A  ++  + YL  +     +H ++  +N L+ E    K++DFGL++L++        
Sbjct: 321 LYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 377

Query: 172 GC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK 225
           G        APE       S+K+DV+ +G++L      WE        P         Y 
Sbjct: 378 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLL------WEIATY-GMSP---------YP 421

Query: 226 CFINRE-LNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
                +    L +   +++     E + ++   C Q  P+ RPS   +    
Sbjct: 422 GIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAF 473

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEF-WTAKISDFGLAKLLSDKGC----------- 173
           +G+ YLH      ILH D+K  N+L+      A + DFG A  L   G            
Sbjct: 161 EGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIP 217

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLE 199
                MAPE     P   K D++    ++L 
Sbjct: 218 GTETHMAPEVVMGKPCDAKVDIWSSCCMMLH 248

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 71.1 bits (174), Expect = 4e-14
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 34/172 (19%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---- 173
           V +A  +A G+ Y+        +H D++  NIL+ E    K++DFGLA+L+ D       
Sbjct: 366 VDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 422

Query: 174 --------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK 225
                    APE       ++K+DV+ +GI+L       E        P         Y 
Sbjct: 423 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILL------TELTTK-GRVP---------YP 466

Query: 226 CFINRE-LNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
             +NRE L+++ RG  +       E+L  +   C + EP  RP+ + +   L
Sbjct: 467 GMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFL 518

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 33/178 (18%), Positives = 54/178 (30%), Gaps = 52/178 (29%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
            I L +A+ + +LH +    ++H D+KP NI        K+ DFGL   +          
Sbjct: 122 HIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVL 178

Query: 174 ------------------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPE 215
                             M+PE       S K D++  G++L E       +    S   
Sbjct: 179 TPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFE-------LLYPFSTQM 231

Query: 216 EIILTNWVYKCFINRELNKLVRGT-----EVDKKNLENLVKVGLWCVQDEPALRPSMK 268
           E + T           L  +                  +V+     +   P  RP   
Sbjct: 232 ERVRT-----------LTDVRNLKFPPLFTQKYPCEYVMVQ---DMLSPSPMERPEAI 275

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 69.7 bits (171), Expect = 6e-14
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 17/96 (17%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK------- 171
           ++ + + K + YL ++    ++H D+KP NIL+DE    K+ DFG++  L D        
Sbjct: 128 KMTVAIVKALYYLKEKHG--VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSA 185

Query: 172 GC---MAPE-----CYKRTPISVKADVYGYGIVLLE 199
           GC   MAPE        +    ++ADV+  GI L+E
Sbjct: 186 GCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVE 221

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 69.7 bits (170), Expect = 8e-14
 Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 20/106 (18%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG- 172
            + R+++ L V + +  LH      ++H  ++P +I++D+     ++ F           
Sbjct: 210 HHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAV 266

Query: 173 ------CMAPE----------CYKRTPISVKADVYGYGIVLLETIC 202
                    PE           +  T ++   D +  G+ +    C
Sbjct: 267 SPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWC 312

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 69.4 bits (170), Expect = 8e-14
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 28/111 (25%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
           +I     + + ++H   +PPI+H D+K +N+L+    T K+ DFG A  +S         
Sbjct: 140 KIFYQTCRAVQHMHR-QKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSA 198

Query: 174 ------------------MAPE---CYKRTPISVKADVYGYGIVLLETICC 203
                               PE    Y   PI  K D++  G +L   +C 
Sbjct: 199 QRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYL-LCF 248

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 69.4 bits (170), Expect = 8e-14
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 15/96 (15%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
              + +   + ++HD     ILH DIK QNI + +  T ++ DFG+A++L+         
Sbjct: 129 DWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARAC 185

Query: 174 ------MAPECYKRTPISVKADVYGYGIVLLETICC 203
                 ++PE  +  P + K+D++  G VL E +C 
Sbjct: 186 IGTPYYLSPEICENKPYNNKSDIWALGCVLYE-LCT 220

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 16/95 (16%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK------- 171
           +I L   K + +L +  +  I+H DIKP NIL+D     K+ DFG++  L D        
Sbjct: 129 KITLATVKALNHLKENLK--IIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDA 186

Query: 172 GC---MAPE----CYKRTPISVKADVYGYGIVLLE 199
           GC   MAPE       R    V++DV+  GI L E
Sbjct: 187 GCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYE 221

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 69.3 bits (169), Expect = 1e-13
 Identities = 10/96 (10%), Positives = 26/96 (27%), Gaps = 13/96 (13%)

Query: 117 RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG---- 172
              +   + +    L  +    ++H    P N+ +       + D      +  +G    
Sbjct: 196 LHILTAQLIRLAANLQSKG---LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASS 252

Query: 173 ---CMAPE---CYKRTPISVKADVYGYGIVLLETIC 202
                AP           +   + +  G+ +    C
Sbjct: 253 VPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWC 288

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 27/108 (25%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
            + L + +G+  +H        H D+KP NIL+ +     + D G               
Sbjct: 138 WLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQA 194

Query: 174 ---------------MAPE---CYKRTPISVKADVYGYGIVLLETICC 203
                           APE         I  + DV+  G VL   +  
Sbjct: 195 LTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYA-MMF 241

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 17/88 (19%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFW-TAKISDFGLAKLLSDKGC----------- 173
           +G+ YLHD     I+H DIK  N+L++ +    KISDFG +K L+               
Sbjct: 133 EGLKYLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQY 189

Query: 174 MAPECYKRTPI--SVKADVYGYGIVLLE 199
           MAPE   + P      AD++  G  ++E
Sbjct: 190 MAPEIIDKGPRGYGKAADIWSLGCTIIE 217

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 67.0 bits (164), Expect = 7e-13
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 15/96 (15%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---- 173
           +  +  +A+G+ ++        +H D++  NIL+      KI+DFGLA+++ D       
Sbjct: 287 IDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTARE 343

Query: 174 --------MAPECYKRTPISVKADVYGYGIVLLETI 201
                    APE       ++K+DV+ +GI+L+E +
Sbjct: 344 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIV 379

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 66.8 bits (163), Expect = 8e-13
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 57/185 (30%)

Query: 113 YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG 172
           YW         + + +  +H      I+H D+KP N L+ +    K+ DFG+A  +    
Sbjct: 160 YWKN-------MLEAVHTIHQHG---IVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDT 208

Query: 173 C-------------MAPECYKRTP-----------ISVKADVYGYGIVLLETICC---WE 205
                         M PE  K              IS K+DV+  G +L         ++
Sbjct: 209 TSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQ 268

Query: 206 NMEIDASKPEEIILTNWVYKC--FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL 263
            +    SK   II  N   +      ++L  +++                  C++ +P  
Sbjct: 269 QIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKC-----------------CLKRDPKQ 311

Query: 264 RPSMK 268
           R S+ 
Sbjct: 312 RISIP 316

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 57/185 (30%)

Query: 113 YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG 172
           YW         + + +  +H      I+H D+KP N L+ +    K+ DFG+A  +    
Sbjct: 132 YWKN-------MLEAVHTIHQHG---IVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDT 180

Query: 173 C-------------MAPECYKRTP-----------ISVKADVYGYGIVLLETICC---WE 205
                         M PE  K              IS K+DV+  G +L         ++
Sbjct: 181 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQ 240

Query: 206 NMEIDASKPEEIILTNWVYKC--FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL 263
            +    SK   II  N   +      ++L  +++                  C++ +P  
Sbjct: 241 QIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKC-----------------CLKRDPKQ 283

Query: 264 RPSMK 268
           R S+ 
Sbjct: 284 RISIP 288

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 57/185 (30%)

Query: 113 YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG 172
           YW         + + +  +H      I+H D+KP N L+ +    K+ DFG+A  +    
Sbjct: 113 YWKN-------MLEAVHTIHQHG---IVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDT 161

Query: 173 C-------------MAPE-----------CYKRTPISVKADVYGYGIVLLETICC---WE 205
                         M PE              ++ IS K+DV+  G +L         ++
Sbjct: 162 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQ 221

Query: 206 NMEIDASKPEEIILTNWVYKC--FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL 263
            +    SK   II  N   +      ++L  +++                  C++ +P  
Sbjct: 222 QIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKC-----------------CLKRDPKQ 264

Query: 264 RPSMK 268
           R S+ 
Sbjct: 265 RISIP 269

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           +   V + + YLH +    ++H DIK  +IL+      K+SDFG    +S          
Sbjct: 146 VCEAVLQALAYLHAQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLV 202

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLE 199
                MAPE   R+  + + D++  GI+++E
Sbjct: 203 GTPYWMAPEVISRSLYATEVDIWSLGIMVIE 233

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 14/91 (15%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           +  +  + + +LH      ++H DIK  NIL+    + K++DFG    ++ +        
Sbjct: 121 VCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMV 177

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLE 199
                MAPE   R     K D++  GI+ +E
Sbjct: 178 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE 208

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 38/179 (21%), Positives = 61/179 (34%), Gaps = 46/179 (25%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-----FWTAKISDFGLAKLLSDK-- 171
            +      G+ +LH      I+H D+KP NIL+          A ISDFGL K L+    
Sbjct: 122 TLLQQTTSGLAHLHSLN---IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRH 178

Query: 172 ------------GCMAPECYKRTPI---SVKADVYGYGIVLLETICC-----WENMEIDA 211
                       G +APE          +   D++  G V    I        ++++  A
Sbjct: 179 SFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQA 238

Query: 212 SKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCV 270
                 IL        +       +   + +      L++     +  +P  RPS K V
Sbjct: 239 -----NIL--------LGACSLDCLHPEKHEDVIARELIE---KMIAMDPQKRPSAKHV 281

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 65.5 bits (159), Expect = 3e-12
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 16/93 (17%)

Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKISDFGLAKLLSDKG-----C- 173
           D++  + YLH+     I+H D+KP+NI++    +    KI D G AK L           
Sbjct: 129 DISSALRYLHENR---IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVG 185

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETIC 202
               +APE  ++   +V  D + +G +  E I 
Sbjct: 186 TLQYLAPELLEQKKYTVTVDYWSFGTLAFECIT 218

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 17/98 (17%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--SDKGC 173
             ++ +LDV + + YL        +H D+  +N+L+ E   AK+SDFGL K    +    
Sbjct: 290 CLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG 346

Query: 174 ------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                  APE  +    S K+DV+ +GI+L      WE
Sbjct: 347 KLPVKWTAPEALREKKFSTKSDVWSFGILL------WE 378

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 13/95 (13%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG----C- 173
            I   V     Y+H+E    I H D+KP NILMD+    K+SDFG ++ + DK       
Sbjct: 155 CIIKSVLNSFSYIHNEKN--ICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRG 212

Query: 174 ----MAPE--CYKRTPISVKADVYGYGIVLLETIC 202
               M PE    + +    K D++  GI L     
Sbjct: 213 TYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFY 247

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 61/182 (33%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-------------------FWTAKI 159
            + L V +G+ Y+H      ++H DIKP NI +                         KI
Sbjct: 119 DLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKI 175

Query: 160 SDFGLAKLLSD----KGC---MAPE-CYKRTPISVKADVYGYGIVLLETICC---WENME 208
            D G    +S     +G    +A E   +      KAD++   + ++          N +
Sbjct: 176 GDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD 235

Query: 209 ----IDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALR 264
               I   +   I          +++E  +L++                   +  +P  R
Sbjct: 236 QWHEIRQGRLPRIPQV-------LSQEFTELLK-----------------VMIHPDPERR 271

Query: 265 PS 266
           PS
Sbjct: 272 PS 273

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           I     KG+ YLH       +H DIK  NIL++    AK++DFG+A  L+D         
Sbjct: 130 ILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVI 186

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLE 199
                MAPE  +    +  AD++  GI  +E
Sbjct: 187 GTPFWMAPEVIQEIGYNCVADIWSLGITAIE 217

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 29/107 (27%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC----- 173
           R+   + + + Y+H +    I+H D+KP NI +DE    KI DFGLAK +          
Sbjct: 120 RLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLD 176

Query: 174 --------------------MAPE-CYKRTPISVKADVYGYGIVLLE 199
                               +A E        + K D+Y  GI+  E
Sbjct: 177 SQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFE 223

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 14/91 (15%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           I  ++ KG+ YLH E     +H DIK  N+L+ E    K++DFG+A  L+D         
Sbjct: 124 ILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFV 180

Query: 174 -----MAPECYKRTPISVKADVYGYGIVLLE 199
                MAPE  K++    KAD++  GI  +E
Sbjct: 181 GTPFWMAPEVIKQSAYDSKADIWSLGITAIE 211

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 22/159 (13%)

Query: 99  DLAYIIFCSAERNPYWN-QRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 156
           D+ Y I+   E NP +   R       +  G+ +LH      I++ D+KP+N+L+D+   
Sbjct: 271 DIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLDDDGN 327

Query: 157 AKISDFGLAKLLSDKG------C-----MAPECYKRTPISVKADVYGYGIVLLETICCW- 204
            +ISD GLA  L                MAPE           D +  G+ L E I    
Sbjct: 328 VRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARG 387

Query: 205 ----ENMEIDASKPEEIILTNWV-YKCFINRELNKLVRG 238
                  +++  + ++ +L   V Y    +         
Sbjct: 388 PFRARGEKVENKELKQRVLEQAVTYPDKFSPASKDFCEA 426

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 17/101 (16%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC- 173
            + ++    + KG+ YL  +     +H D+  +NIL++     KI DFGL K+L      
Sbjct: 114 IKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEF 170

Query: 174 -------------MAPECYKRTPISVKADVYGYGIVLLETI 201
                         APE    +  SV +DV+ +G+VL E  
Sbjct: 171 FKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELF 211

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 61.5 bits (149), Expect = 4e-11
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 16/95 (16%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---- 173
           +  +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+ +         
Sbjct: 196 ICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRK 252

Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLE 199
                    MAPE       ++++DV+ +G++L E
Sbjct: 253 GDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 287

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 61.4 bits (149), Expect = 5e-11
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 25/106 (23%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKISDFGLAKLLSDKG-- 172
            +  DV  G+ +L +     I+H +IKP NI+     D     K++DFG A+ L D    
Sbjct: 116 IVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF 172

Query: 173 ---C-----MAPECYKRTPI--------SVKADVYGYGIVLLETIC 202
                    + P+ Y+R  +            D++  G+       
Sbjct: 173 VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT 218

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 17/101 (16%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC- 173
            + ++    + KG+ YL  +     +H D+  +NIL++     KI DFGL K+L      
Sbjct: 145 IKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEY 201

Query: 174 -------------MAPECYKRTPISVKADVYGYGIVLLETI 201
                         APE    +  SV +DV+ +G+VL E  
Sbjct: 202 YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELF 242

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 15/97 (15%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD---- 170
           N+ + +A  +A+G+ ++ +      +H D++  NIL+ +  + KI+DFGLA+L+ D    
Sbjct: 109 NKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 165

Query: 171 --KGC------MAPECYKRTPISVKADVYGYGIVLLE 199
             +G        APE       ++K+DV+ +GI+L E
Sbjct: 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTE 202

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 22/103 (21%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---- 173
           +   + +AKG+ YL +     ++H ++  +N+L+      +++DFG+A LL         
Sbjct: 118 LNWGVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLY 174

Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
                    MA E       + ++DV+ YG+ +      WE M
Sbjct: 175 SEAKTPIKWMALESIHFGKYTHQSDVWSYGVTV------WELM 211

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 60.3 bits (147), Expect = 6e-11
 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 34/174 (19%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q + +  DV +G+ +L        +H D+  +N L+D     K+SDFG+ + + D     
Sbjct: 105 QLLEMCYDVCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVS 161

Query: 171 -KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV 223
             G        APE +     S K+DV+ +GI++      WE   +    P         
Sbjct: 162 SVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILM------WEVFSL-GKMP--------- 205

Query: 224 YKCFINRE-LNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
           Y  + N E + K+ +G  + + +L  + + ++   C  + P  RP+ + ++  +
Sbjct: 206 YDLYTNSEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSI 259

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 60.7 bits (148), Expect = 6e-11
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 22/103 (21%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC--- 173
           +   + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLAKLL +++     
Sbjct: 120 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHA 176

Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
                    MA E       + ++DV+ YG+ +      WE M
Sbjct: 177 EGGKVPIKWMALESILHRIYTHQSDVWSYGVTV------WELM 213

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 61.3 bits (149), Expect = 6e-11
 Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 20/140 (14%)

Query: 116 QRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK--- 171
            R    A ++  G+  LH E    I++ D+KP+NIL+D+    +ISD GLA  + +    
Sbjct: 286 ARAVFYAAEICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI 342

Query: 172 -------GCMAPECYKRTPISVKADVYGYGIVLLETICCW-----ENMEIDASKPEEIIL 219
                  G MAPE  K    +   D +  G +L E I           +I   + E ++ 
Sbjct: 343 KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVK 402

Query: 220 TNWV-YKCFINRELNKLVRG 238
                Y    + +   L   
Sbjct: 403 EVPEEYSERFSPQARSLCSQ 422

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 25/106 (23%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKISDFGLAKLLSDKG-- 172
            +  DV  G+ +L +     I+H +IKP NI+     D     K++DFG A+ L D    
Sbjct: 116 IVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF 172

Query: 173 ---C-----MAPECYKRTPI--------SVKADVYGYGIVLLETIC 202
                    + P+ Y+R  +            D++  G+       
Sbjct: 173 VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT 218

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 12/93 (12%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG----C- 173
               ++A  + Y H +    ++H DIKP+N+L+      KI+DFG +           C 
Sbjct: 113 TYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCG 169

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETIC 202
               + PE  +      K D++  G++  E + 
Sbjct: 170 TLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV 202

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 32/181 (17%), Positives = 69/181 (38%), Gaps = 30/181 (16%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC- 173
            Q+++ A+ + KG+ YL        +H D+  +N+L++     KI DFGL K +      
Sbjct: 126 KQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEY 182

Query: 174 -------------MAPECYKRTPISVKADVYGYGIVLLETICCWENM----EIDASKPEE 216
                         APEC  ++   + +DV+ +G+ L       E +       +     
Sbjct: 183 YTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTL------HELLTYCDSDSSPMALF 236

Query: 217 IILTNWVYKCFINRELNKLV-RGTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMM 273
           + +    +       L   +  G  +       + + ++   C + +P+ R S + ++  
Sbjct: 237 LKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEG 296

Query: 274 L 274
            
Sbjct: 297 F 297

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 17/98 (17%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-SDKGC--- 173
           +  +  + KG+ YL        +H D+  +NIL++     KI+DFGLAKLL  DK     
Sbjct: 130 LLYSSQICKGMEYLGSRR---CVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVV 186

Query: 174 ----------MAPECYKRTPISVKADVYGYGIVLLETI 201
                      APE       S ++DV+ +G+VL E  
Sbjct: 187 REPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELF 224

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 14/85 (16%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG------C---- 173
           +  G  YLH      ++H D+K  N+ ++E    KI DFGLA  +   G      C    
Sbjct: 124 IVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPN 180

Query: 174 -MAPECYKRTPISVKADVYGYGIVL 197
            +APE   +   S + DV+  G ++
Sbjct: 181 YIAPEVLSKKGHSFEVDVWSIGCIM 205

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 21/102 (20%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
             + + LDV +G+ YL + C   ++H D+  +N L+ E    K+SDFG+ + + D     
Sbjct: 105 TLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTS 161

Query: 171 -KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
             G        +PE +  +  S K+DV+ +G+++      WE
Sbjct: 162 STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLM------WE 197

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 14/90 (15%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG------C---- 173
           +  G+LYLH      ILH D+   N+L+      KI+DFGLA  L          C    
Sbjct: 121 IITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPN 177

Query: 174 -MAPECYKRTPISVKADVYGYGIVLLETIC 202
            ++PE   R+   +++DV+  G +    + 
Sbjct: 178 YISPEIATRSAHGLESDVWSLGCMFYTLLI 207

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 21/102 (20%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
             V  +L + K + YL        +H DI  +NIL+      K+ DFGL++ + D+    
Sbjct: 114 TLVLYSLQICKAMAYLESIN---CVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYK 170

Query: 174 ----------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                     M+PE       +  +DV+ + + +      WE
Sbjct: 171 ASVTRLPIKWMSPESINFRRFTTASDVWMFAVCM------WE 206

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 16/87 (18%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGCM------ 174
           + +G+ YLH      I+H D+KPQNIL+         KI DFG+++ +     +      
Sbjct: 140 ILEGVYYLHQNN---IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGT 196

Query: 175 ----APECYKRTPISVKADVYGYGIVL 197
               APE     PI+   D++  GI+ 
Sbjct: 197 PEYLAPEILNYDPITTATDMWNIGIIA 223

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 36/176 (20%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q V +   +A G+ YL +      +H D+  +NIL++     K+SDFGL+++L D     
Sbjct: 148 QLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAT 204

Query: 171 ---KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
               G        APE       +  +DV+ +GIV+      WE M     +P       
Sbjct: 205 YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVM------WEVMTY-GERP------- 250

Query: 222 WVYKCFINRE-LNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
             Y    N E +  +  G  +         + ++ + C Q E A RP    +V +L
Sbjct: 251 --YWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSIL 304

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 23/105 (21%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC- 173
            Q V +   V  G+ YL D      +H D+  +N+L+D     K+SDFGL+++L D    
Sbjct: 151 MQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDA 207

Query: 174 -------------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                         APE       S  +DV+ +G+V+      WE
Sbjct: 208 AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVM------WE 246

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 23/108 (21%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
            +    +   V+ G+ YL ++     +H ++  +N+L+     AKISDFGL+K L     
Sbjct: 435 VSNVAELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDS 491

Query: 174 --------------MAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
                          APEC      S ++DV+ YG+ +      WE +
Sbjct: 492 YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTM------WEAL 533

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 38/119 (31%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMD-------------EFWTAKISDFGLA 165
            +   +A G+ +LH      I+H D+KPQNIL+              E     ISDFGL 
Sbjct: 119 SLLRQIASGVAHLHSLK---IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLC 175

Query: 166 KLLSDKGC---------------MAPE-------CYKRTPISVKADVYGYGIVLLETIC 202
           K L                     APE          +  ++   D++  G V    + 
Sbjct: 176 KKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILS 234

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 34/174 (19%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
             +  A  ++  + YL  +     +H DI  +N+L+      K+ DFGL++ + D     
Sbjct: 492 SLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYK 548

Query: 174 ----------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV 223
                     MAPE       +  +DV+ +G+ +      WE +     KP         
Sbjct: 549 ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCM------WEILMH-GVKP--------- 592

Query: 224 YKCFINRE-LNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
           ++   N + + ++  G  +         L  +   C   +P+ RP    +   L
Sbjct: 593 FQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQL 646

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 23/108 (21%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
            +    +   V+ G+ YL ++     +H D+  +N+L+     AKISDFGL+K L     
Sbjct: 109 VSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS 165

Query: 174 --------------MAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
                          APEC      S ++DV+ YG+ +      WE +
Sbjct: 166 YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTM------WEAL 207

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 22/135 (16%)

Query: 84  RGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCD 143
           R  +           +   +          +   +  A  VAKG+ +L  +     +H D
Sbjct: 141 RSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRD 197

Query: 144 IKPQNILMDEFWTAKISDFGLAKLLSD------KGC-------MAPECYKRTPISVKADV 190
           +  +N+L+      KI DFGLA+ +        +G        MAPE       ++K+DV
Sbjct: 198 LAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDV 257

Query: 191 YGYGIVLLETICCWE 205
           + YGI+L      WE
Sbjct: 258 WSYGILL------WE 266

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 34/174 (19%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
           Q + +  DV + + YL  +     LH D+  +N L+++    K+SDFGL++ + D     
Sbjct: 121 QLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTS 177

Query: 171 -KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV 223
             G         PE    +  S K+D++ +G+++      WE   +    P         
Sbjct: 178 SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLM------WEIYSL-GKMP--------- 221

Query: 224 YKCFINRE-LNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALRPSMKCVVMML 274
           Y+ F N E    + +G  + + +L  E +  +   C  ++   RP+ K ++  +
Sbjct: 222 YERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNI 275

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 23/104 (22%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
              R A+ VA+G+ YL  +     +H D+  +N+L+      KI DFGL + L       
Sbjct: 122 TLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY 178

Query: 174 ------------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                        APE  K    S  +D + +G+ L      WE
Sbjct: 179 VMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTL------WE 216

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 23/105 (21%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC- 173
              + +   V+ G+ YL +      +H D+  +N+L+     AKISDFGL+K L      
Sbjct: 117 KNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 173

Query: 174 -------------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                         APEC      S K+DV+ +G+++      WE
Sbjct: 174 YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLM------WE 212

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 17/88 (19%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKISDFGLAKLLSDKGCM----- 174
           +  G+ YLH +    I H D+KP+NI++          K+ DFGLA  + D         
Sbjct: 124 ILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFG 180

Query: 175 -----APECYKRTPISVKADVYGYGIVL 197
                APE     P+ ++AD++  G++ 
Sbjct: 181 TPEFVAPEIVNYEPLGLEADMWSIGVIT 208

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG------C---- 173
           +  G  YLH      ++H D+K  N+ ++E    KI DFGLA  +   G      C    
Sbjct: 150 IVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPN 206

Query: 174 -MAPECYKRTPISVKADVYGYGIVLLETIC 202
            +APE   +   S + DV+  G ++   + 
Sbjct: 207 YIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 236

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 22/101 (21%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           +  +  VAKG+ +L        +H D+  +NIL+      KI DFGLA+ + +      K
Sbjct: 148 LSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVK 204

Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
           G        MAPE       + ++DV+ YGI L      WE
Sbjct: 205 GNARLPVKWMAPESIFNCVYTFESDVWSYGIFL------WE 239

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 23/107 (21%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC- 173
            Q V +   +A G+ YL D      +H D+  +NIL++     K+SDFGL ++L D    
Sbjct: 147 IQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEA 203

Query: 174 -------------MAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
                         +PE       +  +DV+ YGIVL      WE M
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVL------WEVM 244

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 22/103 (21%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---- 173
           +   + +AKG+ YL D     ++H D+  +N+L+      KI+DFGLAKLL  +      
Sbjct: 120 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHA 176

Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
                    MA E       + ++DV+ YG+ +      WE M
Sbjct: 177 EGGKVPIKWMALESILHRIYTHQSDVWSYGVTV------WELM 213

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 21/102 (20%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD----- 170
             +  A  ++  + YL  +     +H DI  +N+L+      K+ DFGL++ + D     
Sbjct: 117 SLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYK 173

Query: 171 -KGC------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                     MAPE       +  +DV+ +G+ +      WE
Sbjct: 174 ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCM------WE 209

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 58.0 bits (141), Expect = 5e-10
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 17/99 (17%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--SDKG 172
           +  ++ +LDV + + YL        +H D+  +N+L+ E   AK+SDFGL K    +   
Sbjct: 117 DCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT 173

Query: 173 C------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                   APE  +    S K+DV+ +GI+L      WE
Sbjct: 174 GKLPVKWTAPEALREKKFSTKSDVWSFGILL------WE 206

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 58.1 bits (140), Expect = 5e-10
 Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 28/128 (21%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA-----------KISDFG 163
              +  A+ +   I  +HD     I+H DIKP N ++   +              + D G
Sbjct: 172 GLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLG 228

Query: 164 LAKLLSD--------KGC-----MAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
            +  +            C        E     P + + D +G    +   +     M++ 
Sbjct: 229 QSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYC-MLFGTYMKVK 287

Query: 211 ASKPEEII 218
               E   
Sbjct: 288 NEGGECKP 295

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 57.6 bits (140), Expect = 5e-10
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 15/96 (15%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           + +A  ++  + YL  +     +H D+  +N L+ E    K++DFGL++L++        
Sbjct: 114 LYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170

Query: 172 GC------MAPECYKRTPISVKADVYGYGIVLLETI 201
           G        APE       S+K+DV+ +G++L E  
Sbjct: 171 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           +     +G+ YLH      ++H D+K  NIL+ E    K+ DFG A +++          
Sbjct: 159 VTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPY 215

Query: 174 -MAPE---CYKRTPISVKADVYGYGIVLLE 199
            MAPE            K DV+  GI  +E
Sbjct: 216 WMAPEVILAMDEGQYDGKVDVWSLGITCIE 245

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 41/176 (23%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-----KG 172
           V     +A+G+ YL        +H D+  +N+L+ E    KI+DFGLA+ +++     K 
Sbjct: 206 VSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKT 262

Query: 173 C--------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
                    MAPE       + ++DV+ +G+++      WE   +    P         Y
Sbjct: 263 TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM------WEIFTL-GGSP---------Y 306

Query: 225 KCFINRELNKLVR-GTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
                 EL KL++ G  +DK       L  ++     C    P+ RP+ K +V  L
Sbjct: 307 PGIPVEELFKLLKEGHRMDKPANCTNELYMMM---RDCWHAVPSQRPTFKQLVEDL 359

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 58.4 bits (141), Expect = 6e-10
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 19/139 (13%)

Query: 116 QRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG-- 172
             +R  A ++  G+ ++H+     +++ D+KP NIL+DE    +ISD GLA   S K   
Sbjct: 292 ADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH 348

Query: 173 --C-----MAPE-CYKRTPISVKADVYGYGIVLLETICCW----ENMEIDASKPEEIILT 220
                   MAPE   K       AD +  G +L + +       ++   D  + + + LT
Sbjct: 349 ASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT 408

Query: 221 NWV-YKCFINRELNKLVRG 238
             V      + EL  L+ G
Sbjct: 409 MAVELPDSFSPELRSLLEG 427

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 27/147 (18%)

Query: 109 ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
             +    Q +  A  + +G+ YLH +     +H D+  +N+L+D     KI DFGLAK +
Sbjct: 128 RHSIGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAV 184

Query: 169 SDKGC--------------MAPECYKRTPISVKADVYGYGIVLLETICCWENM----EID 210
            +                  APEC K       +DV+ +G+ L      +E +       
Sbjct: 185 PEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTL------YELLTHCDSSQ 238

Query: 211 ASKPEEIILTNWVYKCFINRELNKLVR 237
           +   + + L            L +L+ 
Sbjct: 239 SPPTKFLELIGIAQGQMTVLRLTELLE 265

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 57.6 bits (140), Expect = 6e-10
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 15/91 (16%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNIL---MDEFWTAKISDFGLAKLLSDK---- 171
            +   V   + YLH+     I+H D+KP+N+L    +E     I+DFGL+K+  +     
Sbjct: 110 LVIQQVLSAVKYLHENG---IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMST 166

Query: 172 -----GCMAPECYKRTPISVKADVYGYGIVL 197
                G +APE   + P S   D +  G++ 
Sbjct: 167 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIT 197

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 17/102 (16%)

Query: 115 NQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG- 172
            + V++   ++   + YL ++    I+H D+KP NIL+DE     I+DF +A +L  +  
Sbjct: 114 EETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQ 170

Query: 173 ----C-----MAPECYKRTPI---SVKADVYGYGIVLLETIC 202
                     MAPE +        S   D +  G+   E + 
Sbjct: 171 ITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLR 212

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 17/88 (19%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKISDFGLAKLLSDKGCM----- 174
           +  G+ YLH +    I H D+KP+NI++          K+ DFGLA  + D         
Sbjct: 124 ILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFG 180

Query: 175 -----APECYKRTPISVKADVYGYGIVL 197
                APE     P+ ++AD++  G++ 
Sbjct: 181 TPEFVAPEIVNYEPLGLEADMWSIGVIT 208

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 57.2 bits (139), Expect = 7e-10
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG----C-----M 174
           +A  + Y H+     ++H DIKP+N+LM      KI+DFG +           C     +
Sbjct: 123 LADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYL 179

Query: 175 APECYKRTPISVKADVYGYGIVLLETIC 202
            PE  +      K D++  G++  E + 
Sbjct: 180 PPEMIEGKTHDEKVDLWCAGVLCYEFLV 207

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 36/176 (20%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT--------AKISDFGLAKL 167
            ++ +A  +A  + +L +     ++H ++  +NIL+              K+SD G++  
Sbjct: 114 WKLEVAKQLAAAMHFLEENT---LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISIT 170

Query: 168 LSDKGC-------MAPECYK-RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL 219
           +  K         + PEC +    +++  D + +G  L      WE       KP     
Sbjct: 171 VLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTL------WEICSG-GDKP----- 218

Query: 220 TNWVYKCFINRE-LNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
                    ++  L       ++       L  +   C+  EP  RPS + ++  L
Sbjct: 219 ----LSALDSQRKLQFYEDRHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDL 270

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 17/88 (19%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKISDFGLAKLLSDKGCM----- 174
           +  G+ YLH +    I H D+KP+NI++          K+ DFG+A  +           
Sbjct: 117 ILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFG 173

Query: 175 -----APECYKRTPISVKADVYGYGIVL 197
                APE     P+ ++AD++  G++ 
Sbjct: 174 TPEFVAPEIVNYEPLGLEADMWSIGVIT 201

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 22/101 (21%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           +  +  VA+G+ +L  +     +H D+  +N+L+     AKI DFGLA+ + +      K
Sbjct: 167 LHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 223

Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
           G        MAPE       +V++DV+ YGI+L      WE
Sbjct: 224 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILL------WE 258

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 41/176 (23%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-----KG 172
           +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ + + +     KG
Sbjct: 141 IQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKG 197

Query: 173 C--------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
                    M+PE  K    +  +DV+ +G+VL      WE   + A +P         Y
Sbjct: 198 GKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVL------WEIATL-AEQP---------Y 241

Query: 225 KCFINRE-LNKLVRGTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
           +   N + L  ++ G  +DK       L  L+     C Q  P +RPS   ++  +
Sbjct: 242 QGLSNEQVLRFVMEGGLLDKPDNCPDMLFELM---RMCWQYNPKMRPSFLEIISSI 294

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 41/176 (23%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-----KG 172
           VR  +D+A G+ YL        +H D+  +N ++ E  T  ++DFGL++ +       +G
Sbjct: 140 VRFMVDIACGMEYLSSRN---FIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQG 196

Query: 173 C--------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
           C        +A E       +V +DV+ +G+ +      WE M      P         Y
Sbjct: 197 CASKLPVKWLALESLADNLYTVHSDVWAFGVTM------WEIMTR-GQTP---------Y 240

Query: 225 KCFINRE-LNKLVRGTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               N E  N L+ G  + +     + + +L+     C   +P  RPS  C+ M L
Sbjct: 241 AGIENAEIYNYLIGGNRLKQPPECMEEVYDLM---YQCWSADPKQRPSFTCLRMEL 293

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 19/96 (19%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           I  ++ +G+ +LH      ++H DIK QN+L+ E    K+ DFG++  L           
Sbjct: 134 ICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFI 190

Query: 174 -----MAPE-----CYKRTPISVKADVYGYGIVLLE 199
                MAPE              K+D++  GI  +E
Sbjct: 191 GTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIE 226

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 17/93 (18%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGC-- 173
            I   +   + ++HD     ++H D+KP+N+L    ++    KI DFG A+L        
Sbjct: 110 YIMRKLVSAVSHMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPL 166

Query: 174 ---------MAPECYKRTPISVKADVYGYGIVL 197
                     APE   +       D++  G++L
Sbjct: 167 KTPCFTLHYAAPELLNQNGYDESCDLWSLGVIL 199

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 24/114 (21%)

Query: 107 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           S +RNP     +   L VA+G+ YL ++     +H D+  +N ++DE +T K++DFGLA+
Sbjct: 116 SPQRNPTVKDLISFGLQVARGMEYLAEQK---FVHRDLAARNCMLDESFTVKVADFGLAR 172

Query: 167 LLSD-------KGC--------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
            + D       +           A E  +    + K+DV+ +G++L      WE
Sbjct: 173 DILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLL------WE 220

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 17/88 (19%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGC------- 173
           + + + Y HD     I+H D+KP  +L+   +     K+  FG+A  L + G        
Sbjct: 139 ILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVG 195

Query: 174 ----MAPECYKRTPISVKADVYGYGIVL 197
               MAPE  KR P     DV+G G++L
Sbjct: 196 TPHFMAPEVVKREPYGKPVDVWGCGVIL 223

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 41/176 (23%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---- 173
           V     +A+G+ YL  +     +H D+  +N+L+ E    KI+DFGLA+ +++       
Sbjct: 160 VSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKT 216

Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
                    MAPE       + ++DV+ +G+++      WE   +    P         Y
Sbjct: 217 TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM------WEIFTL-GGSP---------Y 260

Query: 225 KCFINRELNKLVR-GTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
                 EL KL++ G  +DK       L  ++     C    P+ RP+ K +V  L
Sbjct: 261 PGIPVEELFKLLKEGHRMDKPANCTNELYMMM---RDCWHAVPSQRPTFKQLVEDL 313

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 117 RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--- 172
           R R    ++   + YLH E    +++ D+K +N+++D+    KI+DFGL K     G   
Sbjct: 249 RARFYGAEIVSALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATM 306

Query: 173 ---C-----MAPECYKRTPISVKADVYGYGIVLLETICCW 204
              C     +APE  +        D +G G+V+ E +C  
Sbjct: 307 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 346

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 20/97 (20%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           I  +V +G+ YLH       +H D+K  NIL+ E  + +I+DFG++  L+  G       
Sbjct: 126 ILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKV 182

Query: 174 ----------MAPECYKRT-PISVKADVYGYGIVLLE 199
                     MAPE  ++      KAD++ +GI  +E
Sbjct: 183 RKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIE 219

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 16/87 (18%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGCM------ 174
           + + I Y H      I+H ++KP+N+L+    +    K++DFGLA  ++D          
Sbjct: 114 ILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGT 170

Query: 175 ----APECYKRTPISVKADVYGYGIVL 197
               +PE  K+ P S   D++  G++L
Sbjct: 171 PGYLSPEVLKKDPYSKPVDIWACGVIL 197

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 43/180 (23%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
             +   L VAKG+ +L  +     +H D+  +N ++DE +T K++DFGLA+ + DK    
Sbjct: 193 DLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDS 249

Query: 174 -------------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                        MA E  +    + K+DV+ +G++L      WE M    + P      
Sbjct: 250 VHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLL------WELMTR-GAPP------ 296

Query: 221 NWVYKCFINRE-LNKLVRGTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
              Y      +    L++G  + +       L  ++   L C   +  +RPS   +V  +
Sbjct: 297 ---YPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVM---LKCWHPKAEMRPSFSELVSRI 350

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 17/88 (19%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKISDFGLAKLLSDKGCM----- 174
           +  G+ YLH      I H D+KP+NI++          KI DFGLA  +           
Sbjct: 123 ILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFG 179

Query: 175 -----APECYKRTPISVKADVYGYGIVL 197
                APE     P+ ++AD++  G++ 
Sbjct: 180 TPEFVAPEIVNYEPLGLEADMWSIGVIT 207

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM---- 174
           +I   + + I  LH      I+H D+KP+NIL+D+    K++DFG +  L     +    
Sbjct: 128 KIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVC 184

Query: 175 ------APE------CYKRTPISVKADVYGYGIVL 197
                 APE               + D++  G+++
Sbjct: 185 GTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIM 219

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 37/177 (20%)

Query: 116 QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC-- 173
             +   L VAKG+ YL  +     +H D+  +N ++DE +T K++DFGLA+ + DK    
Sbjct: 129 DLIGFGLQVAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYS 185

Query: 174 -------------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                        MA E  +    + K+DV+ +G++L      WE M    + P      
Sbjct: 186 VHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLL------WELMTR-GAPP------ 232

Query: 221 NWVYKCFINRE-LNKLVRGTEVDKKN--LENLVKVGLWCVQDEPALRPSMKCVVMML 274
              Y      +    L++G  + +     + L +V L C   +  +RPS   +V  +
Sbjct: 233 ---YPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRI 286

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 41/176 (23%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           + +A  VA G++YL        +H D+  +N L+ +    KI DFG+++ +         
Sbjct: 161 LAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVG 217

Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
           G        M PE       + ++DV+ +G+VL      WE       +P         +
Sbjct: 218 GRTMLPIRWMPPESILYRKFTTESDVWSFGVVL------WEIFTY-GKQP---------W 261

Query: 225 KCFINRELNKLVR-GTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               N E    +  G E+++       +  ++     C Q EP  R S+K V   L
Sbjct: 262 YQLSNTEAIDCITQGRELERPRACPPEVYAIM---RGCWQREPQQRHSIKDVHARL 314

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 19/96 (19%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           +   + + + +LH +    I+H D+K  N+LM      +++DFG++              
Sbjct: 122 VCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFI 178

Query: 174 -----MAPE-----CYKRTPISVKADVYGYGIVLLE 199
                MAPE       K TP   KAD++  GI L+E
Sbjct: 179 GTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIE 214

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 15/86 (17%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTA--KISDFGLAKLLSDKGCM------- 174
           + +GI ++H      ILH D+KP+NIL         KI DFGLA+    +  +       
Sbjct: 196 ICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTP 252

Query: 175 ---APECYKRTPISVKADVYGYGIVL 197
              APE      +S   D++  G++ 
Sbjct: 253 EFLAPEVVNYDFVSFPTDMWSVGVIA 278

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           +G+ +LH      ++H D+KPQNIL+      K++DFGLA+
Sbjct: 131 RGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLAR 168

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 17/89 (19%)

Query: 123 DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG------C--- 173
           D+ KGI YLH +    I+H DIKP N+L+ E    KI+DFG++                 
Sbjct: 145 DLIKGIEYLHYQK---IIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTP 201

Query: 174 --MAPEC---YKRTPISVKADVYGYGIVL 197
             MAPE     ++       DV+  G+ L
Sbjct: 202 AFMAPESLSETRKIFSGKALDVWAMGVTL 230

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 22/101 (21%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           +  +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+ +        K
Sbjct: 151 ICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRK 207

Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
           G        MAPE       ++++DV+ +G++L      WE
Sbjct: 208 GDARLPLKWMAPETIFDRVYTIQSDVWSFGVLL------WE 242

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 41/176 (23%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD-----KG 172
           ++  +D+A G+ YL +      LH D+  +N ++ +  T  ++DFGL+K +       +G
Sbjct: 150 LKFMVDIALGMEYLSNRN---FLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQG 206

Query: 173 C--------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
                    +A E       + K+DV+ +G+ +      WE        P         Y
Sbjct: 207 RIAKMPVKWIAIESLADRVYTSKSDVWAFGVTM------WEIATR-GMTP---------Y 250

Query: 225 KCFINRE-LNKLVRGTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               N E  + L+ G  + +       L  ++     C + +P  RP+   + + L
Sbjct: 251 PGVQNHEMYDYLLHGHRLKQPEDCLDELYEIM---YSCWRTDPLDRPTFSVLRLQL 303

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 3/41 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK 166
           +G+ +LH  C   I+H D+KP+NIL+    T K++DFGLA+
Sbjct: 131 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLAR 168

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 54.8 bits (133), Expect = 6e-09
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           KG+ + H      +LH D+KPQN+L++     K+++FGLA+    
Sbjct: 112 KGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAFGI 153

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 16/87 (18%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGCM------ 174
           + + + YLH+     I+H D+KP+N+L          KI+DFGL+K++  +  M      
Sbjct: 157 ILEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGT 213

Query: 175 ----APECYKRTPISVKADVYGYGIVL 197
               APE  +      + D++  GI+ 
Sbjct: 214 PGYCAPEILRGCAYGPEVDMWSVGIIT 240

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 22/101 (21%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC---- 173
           V  A  VA+G+ YL        +H D+  +N+L+ E    KI+DFGLA+ +         
Sbjct: 194 VSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 250

Query: 174 ---------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
                    MAPE       + ++DV+ +G++L      WE
Sbjct: 251 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL------WE 285

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           +G+ + H+     ILH D+KPQN+L+++    K+ DFGLA+    
Sbjct: 119 QGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLARAFGI 160

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 15/100 (15%)

Query: 117 RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--- 172
           R R    ++   + YLH      +++ DIK +N+++D+    KI+DFGL K     G   
Sbjct: 106 RARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162

Query: 173 ---C-----MAPECYKRTPISVKADVYGYGIVLLETICCW 204
              C     +APE  +        D +G G+V+ E +C  
Sbjct: 163 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 41/176 (23%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           + IA  +A G++YL  +     +H D+  +N L+      KI DFG+++ +         
Sbjct: 136 LHIASQIASGMVYLASQH---FVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVG 192

Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
           G        M PE       + ++DV+ +G++L      WE       +P         +
Sbjct: 193 GHTMLPIRWMPPESIMYRKFTTESDVWSFGVIL------WEIFTY-GKQP---------W 236

Query: 225 KCFINRE-LNKLVRGTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               N E +  + +G  +++     K + +++   L C Q EP  R ++K +  +L
Sbjct: 237 FQLSNTEVIECITQGRVLERPRVCPKEVYDVM---LGCWQREPQQRLNIKEIYKIL 289

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           +G+ + H      +LH D+KPQN+L++     K++DFGLA+    
Sbjct: 114 QGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 54.5 bits (132), Expect = 8e-09
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           +G+ + H      ILH D+KPQN+L++     K++DFGLA+    
Sbjct: 130 RGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLARAFGI 171

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 16/87 (18%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGCM------ 174
           + + I Y H      I+H ++KP+N+L+    +    K++DFGLA  ++D          
Sbjct: 137 ILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGT 193

Query: 175 ----APECYKRTPISVKADVYGYGIVL 197
               +PE  K+ P S   D++  G++L
Sbjct: 194 PGYLSPEVLKKDPYSKPVDIWACGVIL 220

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 54.5 bits (131), Expect = 8e-09
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 23/100 (23%)

Query: 120 IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC------ 173
           I   V K + Y+H       +H  +K  +IL+       +S       +   G       
Sbjct: 133 ILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVH 189

Query: 174 ------------MAPECYKRTPI--SVKADVYGYGIVLLE 199
                       ++PE  ++       K+D+Y  GI   E
Sbjct: 190 DFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACE 229

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 15/86 (17%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM--DEFWTAKISDFGLAKLLSDKGCM------- 174
             +G+ ++H+     I+H DIKP+NI+    +  + KI DFGLA  L+    +       
Sbjct: 158 ACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATA 214

Query: 175 ---APECYKRTPISVKADVYGYGIVL 197
              APE   R P+    D++  G++ 
Sbjct: 215 EFAAPEIVDREPVGFYTDMWAIGVLG 240

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 54.1 bits (131), Expect = 9e-09
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
            GI Y HD     +LH D+KPQN+L++     KI+DFGLA+    
Sbjct: 111 NGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGI 152

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 41/176 (23%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           +  A  +++G+ YL +     ++H D+  +NIL+ E    KISDFGL++ + +      +
Sbjct: 153 ISFAWQISQGMQYLAEMK---LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKR 209

Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
                    MA E       + ++DV+ +G++L      WE + +    P         Y
Sbjct: 210 SQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLL------WEIVTL-GGNP---------Y 253

Query: 225 KCFINRE-LNKLVRGTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
                    N L  G  +++     + +  L+   L C + EP  RP    +   L
Sbjct: 254 PGIPPERLFNLLKTGHRMERPDNCSEEMYRLM---LQCWKQEPDKRPVFADISKDL 306

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 17/88 (19%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGC------- 173
           + + +L+ H      ++H ++KP+N+L+    +    K++DFGLA  +  +         
Sbjct: 119 ILEAVLHCHQMG---VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAG 175

Query: 174 ----MAPECYKRTPISVKADVYGYGIVL 197
               ++PE  ++ P     D++  G++L
Sbjct: 176 TPGYLSPEVLRKDPYGKPVDLWACGVIL 203

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 3/45 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           +G+ Y H +    +LH D+KPQN+L++E    K++DFGLA+  S 
Sbjct: 111 RGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLARAKSI 152

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           +G+ YLH      ILH D+KP N+L+DE    K++DFGLAK    
Sbjct: 123 QGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGS 164

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 18/94 (19%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKISDFGLAKLLSDKG-- 172
            +   + K + YLH +    ++H D+KP NIL         + +I DFG AK L  +   
Sbjct: 120 AVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL 176

Query: 173 ----C-----MAPECYKRTPISVKADVYGYGIVL 197
               C     +APE  +R       D++  G++L
Sbjct: 177 LMTPCYTANFVAPEVLERQGYDAACDIWSLGVLL 210

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 39/179 (21%), Positives = 67/179 (37%), Gaps = 44/179 (24%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKISDFGLAKLLSDKGC- 173
           + +A D+A G  YL +      +H DI  +N L+        AKI DFG+A+ +      
Sbjct: 143 LHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYY 199

Query: 174 ------------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                       M PE +     + K D + +G++L      WE   +    P       
Sbjct: 200 RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLL------WEIFSL-GYMP------- 245

Query: 222 WVYKCFINRE-LNKLVRGTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
             Y    N+E L  +  G  +D        +  ++     C Q +P  RP+   ++  +
Sbjct: 246 --YPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIM---TQCWQHQPEDRPNFAIILERI 299

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 15/91 (16%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDK---- 171
            I  D+   I +LH      I H D+KP+N+L    ++    K++DFG AK  +      
Sbjct: 132 EIMRDIGTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQT 188

Query: 172 -----GCMAPECYKRTPISVKADVYGYGIVL 197
                  +APE           D++  G+++
Sbjct: 189 PCYTPYYVAPEVLGPEKYDKSCDMWSLGVIM 219

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 10/92 (10%), Positives = 22/92 (23%), Gaps = 19/92 (20%)

Query: 108 AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL 167
           A+ +P     +R    +A      H      +      P  + +       ++       
Sbjct: 122 ADTSPSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPATM-- 176

Query: 168 LSDKGCMAPECYKRTPISVKADVYGYGIVLLE 199
                            + + D+ G G  L  
Sbjct: 177 --------------PDANPQDDIRGIGASLYA 194

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECY 179
            G+ Y+H      ILH D+K  N+L+      K++DFGLA+  S      P  Y
Sbjct: 135 NGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRY 185

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 15/86 (17%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM--DEFWTAKISDFGLAKLLSDKGCM------- 174
           V + + +LH      I H DI+P+NI+       T KI +FG A+ L             
Sbjct: 111 VCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAP 167

Query: 175 ---APECYKRTPISVKADVYGYGIVL 197
              APE ++   +S   D++  G ++
Sbjct: 168 EYYAPEVHQHDVVSTATDMWSLGTLV 193

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 116 QRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG-- 172
            R R  A ++   +++LHD+    I++ D+K  N+L+D     K++DFG+ K     G  
Sbjct: 124 ARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVT 180

Query: 173 ----C-----MAPECYKRTPISVKADVYGYGIVLLETICCW 204
               C     +APE  +        D +  G++L E +C  
Sbjct: 181 TATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGH 221

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 19/95 (20%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGCM- 174
                +   + YLH+     I+H D+KP+N+L+   +E    KI+DFG +K+L +   M 
Sbjct: 243 LYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMR 299

Query: 175 ---------APE---CYKRTPISVKADVYGYGIVL 197
                    APE          +   D +  G++L
Sbjct: 300 TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVIL 334

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG 172
            GI + H      I+H DIKP+NIL+ +    K+ DFG A+ L+  G
Sbjct: 135 NGIGFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG 178

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 16/86 (18%)

Query: 130 YLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--------C-----MAP 176
           YLH +    I+H D+KP+NIL++E    +I+DFG AK+LS +               ++P
Sbjct: 145 YLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 201

Query: 177 ECYKRTPISVKADVYGYGIVLLETIC 202
           E          +D++  G ++ + + 
Sbjct: 202 ELLTEKSACKSSDLWALGCIIYQLVA 227

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 14/85 (16%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM--------- 174
           +   + YL  +    I+H DIK +NI++ E +T K+ DFG A  L               
Sbjct: 139 LVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEY 195

Query: 175 -APECYKRTP-ISVKADVYGYGIVL 197
            APE     P    + +++  G+ L
Sbjct: 196 CAPEVLMGNPYRGPELEMWSLGVTL 220

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 14/82 (17%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------AP 176
            + Y H +    I+H D+K +N+L+D     KI+DFG +   +  G +          AP
Sbjct: 126 AVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAP 182

Query: 177 ECYKRTP-ISVKADVYGYGIVL 197
           E ++       + DV+  G++L
Sbjct: 183 ELFQGKKYDGPEVDVWSLGVIL 204

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG 172
           + + + H       +H D+KP+NIL+ +    K+ DFG A+LL+   
Sbjct: 113 QAVNFCHKHN---CIHRDVKPENILITKHSVIKLCDFGFARLLTGPS 156

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM---- 174
            I   + + + +LH      I+H D+KP+NIL+D+    ++SDFG +  L     +    
Sbjct: 204 SIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELC 260

Query: 175 ------APE------CYKRTPISVKADVYGYGIVL 197
                 APE               + D++  G++L
Sbjct: 261 GTPGYLAPEILKCSMDETHPGYGKEVDLWACGVIL 295

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 15/100 (15%)

Query: 117 RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--- 172
             R  + +++  + YLH+     I++ D+K  N+L+D     K++D+G+ K     G   
Sbjct: 111 HARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT 167

Query: 173 ---C-----MAPECYKRTPISVKADVYGYGIVLLETICCW 204
              C     +APE  +        D +  G+++ E +   
Sbjct: 168 STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGR 207

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 15/100 (15%)

Query: 117 RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--- 172
             R  + +++  + YLH+     I++ D+K  N+L+D     K++D+G+ K     G   
Sbjct: 154 HARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT 210

Query: 173 ---C-----MAPECYKRTPISVKADVYGYGIVLLETICCW 204
              C     +APE  +        D +  G+++ E +   
Sbjct: 211 STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGR 250

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 15/100 (15%)

Query: 117 RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--- 172
                A ++A G+ +L  +    I++ D+K  N+++D     KI+DFG+ K     G   
Sbjct: 443 HAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTT 499

Query: 173 ---C-----MAPECYKRTPISVKADVYGYGIVLLETICCW 204
              C     +APE     P     D + +G++L E +   
Sbjct: 500 KTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 539

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEF-WTAKISDFGLAKLLS 169
           + I  LH      + H DIKP N+L++E   T K+ DFG AK LS
Sbjct: 140 RSIGCLHLPS-VNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLS 183

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 15/100 (15%)

Query: 117 RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--- 172
                A ++A G+ +L  +    I++ D+K  N+++D     KI+DFG+ K     G   
Sbjct: 122 HAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTT 178

Query: 173 ---C-----MAPECYKRTPISVKADVYGYGIVLLETICCW 204
              C     +APE     P     D + +G++L E +   
Sbjct: 179 KTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 218

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 130 YLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG---C-----MAPECYKR 181
           YLH      +++ D+KP+N+L+D+    +++DFG AK +  +    C     +APE    
Sbjct: 156 YLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILS 212

Query: 182 TPISVKADVYGYGIVLLETIC 202
              +   D +  G+++ E   
Sbjct: 213 KGYNKAVDWWALGVLIYEMAA 233

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 19/95 (20%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGCM- 174
                +   + YLH+     I+H D+KP+N+L+   +E    KI+DFG +K+L +   M 
Sbjct: 118 LYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMR 174

Query: 175 ---------APE---CYKRTPISVKADVYGYGIVL 197
                    APE          +   D +  G++L
Sbjct: 175 TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVIL 209

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 14/95 (14%)

Query: 121 ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG------C- 173
           A ++  G+ +LH +    I++ D+K  NIL+D+    KI+DFG+ K            C 
Sbjct: 124 AAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCG 180

Query: 174 ----MAPECYKRTPISVKADVYGYGIVLLETICCW 204
               +APE       +   D + +G++L E +   
Sbjct: 181 TPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ 215

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 14/92 (15%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG------C---- 173
           +A  + YLH      I++ D+KP+NIL+D      ++DFGL K   +        C    
Sbjct: 148 IASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPE 204

Query: 174 -MAPECYKRTPISVKADVYGYGIVLLETICCW 204
            +APE   + P     D +  G VL E +   
Sbjct: 205 YLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGL 236

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTA-----KISDFGLAKLLSD 170
            G+ + H       LH D+KPQN+L+     +     KI DFGLA+    
Sbjct: 143 NGVNFCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGI 189

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 41/176 (23%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--SD---KG 172
           + IA  VA G+ YL +      +H D+  +N L+ E    KI+DFGL++ +  +D     
Sbjct: 177 LCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKAD 233

Query: 173 C--------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
                    M PE       + ++DV+ YG+VL      WE       +P         Y
Sbjct: 234 GNDAIPIRWMPPESIFYNRYTTESDVWAYGVVL------WEIFSY-GLQP---------Y 277

Query: 225 KCFINRELNKLVR-GTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               + E+   VR G  +         L NL+     C    PA RPS   +  +L
Sbjct: 278 YGMAHEEVIYYVRDGNILACPENCPLELYNLM---RLCWSKLPADRPSFCSIHRIL 330

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG------C-----MA 175
            + +LH +    I++ D+KP+NI+++     K++DFGL K     G      C     MA
Sbjct: 133 ALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMA 189

Query: 176 PECYKRTPISVKADVYGYGIVLLETICCW 204
           PE   R+  +   D +  G ++ + +   
Sbjct: 190 PEILMRSGHNRAVDWWSLGALMYDMLTGA 218

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 22/98 (22%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM--DEFWTAKISDFGLAKLLSDKGC--- 173
            I   +   + YLH++    I H DIKP+N L   ++ +  K+ DFGL+K          
Sbjct: 172 NIMRQIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEY 228

Query: 174 ------------MAPE--CYKRTPISVKADVYGYGIVL 197
                       +APE           K D +  G++L
Sbjct: 229 YGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLL 266

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 51.4 bits (124), Expect = 7e-08
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 22/101 (21%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD------K 171
           V +   +A G+ YL       ++H D+  +N+L+ +    KISD GL + +         
Sbjct: 131 VHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLL 187

Query: 172 GC-------MAPECYKRTPISVKADVYGYGIVLLETICCWE 205
           G        MAPE       S+ +D++ YG+VL      WE
Sbjct: 188 GNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVL------WE 222

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 19/103 (18%)

Query: 115 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD--KG 172
            Q +  A DVA+G+ YL  +     +H D+  +NIL+ E + AKI+DFGL++      K 
Sbjct: 142 QQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK 198

Query: 173 C--------MAPECYKRTPISVKADVYGYGIVLLETICCWENM 207
                    MA E    +  +  +DV+ YG++L      WE +
Sbjct: 199 TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLL------WEIV 235

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 14/82 (17%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------AP 176
            + Y H      ++H D+KP+N+L+D    AKI+DFGL+ ++SD   +          AP
Sbjct: 123 AVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAP 179

Query: 177 ECYKRTP-ISVKADVYGYGIVL 197
           E          + D++  G++L
Sbjct: 180 EVISGRLYAGPEVDIWSCGVIL 201

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 51.0 bits (123), Expect = 8e-08
 Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 17/85 (20%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--------C----- 173
           G++YLH      I H DIKP+N+L+DE    KISDFGLA +             C     
Sbjct: 117 GVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPY 173

Query: 174 MAPECYKRTP-ISVKADVYGYGIVL 197
           +APE  KR    +   DV+  GIVL
Sbjct: 174 VAPELLKRREFHAEPVDVWSCGIVL 198

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMD-EFWTAKISDFGLAKLLS 169
           + + Y+H      I H DIKPQN+L+D      K+ DFG AK+L 
Sbjct: 152 RSLAYIHSIG---ICHRDIKPQNLLLDPPSGVLKLIDFGSAKILI 193

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 14/63 (22%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMD-EFWTAKISDFGLAKLLSDKGCM---------- 174
           + + Y+H      I H DIKPQN+L+D +    K+ DFG AK L                
Sbjct: 167 RSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYR 223

Query: 175 APE 177
           APE
Sbjct: 224 APE 226

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 14/82 (17%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------AP 176
            I Y H      I+H D+KP+N+L+D+    KI+DFGL+ +++D   +          AP
Sbjct: 120 AIEYCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAP 176

Query: 177 ECYKRTP-ISVKADVYGYGIVL 197
           E          + DV+  GIVL
Sbjct: 177 EVINGKLYAGPEVDVWSCGIVL 198

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 17/92 (18%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGC-- 173
            I   V  G+ YLH      I+H D+KP+N+L+   ++    KI DFGL+ +  ++    
Sbjct: 140 VIIKQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMK 196

Query: 174 --------MAPECYKRTPISVKADVYGYGIVL 197
                   +APE  ++     K DV+  G++L
Sbjct: 197 ERLGTAYYIAPEVLRK-KYDEKCDVWSIGVIL 227

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 14/92 (15%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG------C---- 173
           +A  + +LH      I++ D+KP+NIL+DE    K++DFGL+K   D        C    
Sbjct: 135 LALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVE 191

Query: 174 -MAPECYKRTPISVKADVYGYGIVLLETICCW 204
            MAPE   R   +  AD + +G+++ E +   
Sbjct: 192 YMAPEVVNRRGHTQSADWWSFGVLMFEMLTGT 223

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTA----KISDFGLAKL 167
            GI YLH      +LH D+KP NIL+          KI+D G A+L
Sbjct: 139 DGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARL 181

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 44/179 (24%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKISDFGLAKLLSDKGC- 173
           + +A D+A G  YL +      +H DI  +N L+        AKI DFG+A+ +   G  
Sbjct: 184 LHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYY 240

Query: 174 ------------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                       M PE +     + K D + +G++L      WE   +    P       
Sbjct: 241 RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLL------WEIFSL-GYMP------- 286

Query: 222 WVYKCFINRE-LNKLVRGTEVDK-----KNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
             Y    N+E L  +  G  +D        +  ++     C Q +P  RP+   ++  +
Sbjct: 287 --YPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIM---TQCWQHQPEDRPNFAIILERI 340

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 17/92 (18%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGC-- 173
           RI   V  GI Y+H      I+H D+KP+N+L+    +    +I DFGL+          
Sbjct: 130 RIIRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMK 186

Query: 174 --------MAPECYKRTPISVKADVYGYGIVL 197
                   +APE         K DV+  G++L
Sbjct: 187 DKIGTAYYIAPEVLHG-TYDEKCDVWSTGVIL 217

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           G+ YLH +    I+H DIKP N+L+    T KIS  G+A+ L  
Sbjct: 121 GLEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAEALHP 161

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 11/81 (13%)

Query: 130 YLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG---C-----MAPECYKR 181
           YLH +    I++ D+KP+NIL+D+    KI+DFG AK + D     C     +APE    
Sbjct: 121 YLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVST 177

Query: 182 TPISVKADVYGYGIVLLETIC 202
            P +   D + +GI++ E + 
Sbjct: 178 KPYNKSIDWWSFGILIYEMLA 198

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA--KISDFGLAKLLSDKGCM- 174
           V     V KG+ ++H+      +H D+KP+NI+     +   K+ DFGL   L  K  + 
Sbjct: 258 VEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVK 314

Query: 175 ---------APECYKRTPISVKADVYGYGIVL 197
                    APE  +  P+    D++  G++ 
Sbjct: 315 VTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLS 346

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 16/95 (16%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDE------FWTAKISDFGLAKLLSDKG 172
           +I+  +  G+ Y+H  C   I+H DIKP+N+LM+           KI+D G A    +  
Sbjct: 135 QISKQLLLGLDYMHRRCG--IIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY 192

Query: 173 CM--------APECYKRTPISVKADVYGYGIVLLE 199
                     +PE     P    AD++    ++ E
Sbjct: 193 TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFE 227

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 17/85 (20%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG--------C----- 173
           G++YLH      I H DIKP+N+L+DE    KISDFGLA +             C     
Sbjct: 117 GVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPY 173

Query: 174 MAPECYKRTP-ISVKADVYGYGIVL 197
           +APE  KR    +   DV+  GIVL
Sbjct: 174 VAPELLKRREFHAEPVDVWSCGIVL 198

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 14/82 (17%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------AP 176
           G+ Y H      ++H D+KP+N+L+D    AKI+DFGL+ ++SD   +          AP
Sbjct: 128 GVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAP 184

Query: 177 ECYKRTP-ISVKADVYGYGIVL 197
           E          + D++  G++L
Sbjct: 185 EVISGRLYAGPEVDIWSSGVIL 206

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGC-- 173
           RI   V  GI Y+H      I+H D+KP+NIL+   ++    KI DFGL+          
Sbjct: 125 RIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMK 181

Query: 174 --------MAPECYKRTPISVKADVYGYGIVL 197
                   +APE  +      K DV+  G++L
Sbjct: 182 DRIGTAYYIAPEVLRG-TYDEKCDVWSAGVIL 212

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 17/87 (19%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGC------- 173
           +  GI YLH      I+H DIKP+NIL+   +     KI DFGL+   S           
Sbjct: 155 ILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGT 211

Query: 174 ---MAPECYKRTPISVKADVYGYGIVL 197
              +APE  K+   + K DV+  G+++
Sbjct: 212 AYYIAPEVLKK-KYNEKCDVWSCGVIM 237

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGCM- 174
            I   + + I YLH      I H D+KP+N+L          K++DFG AK  +    + 
Sbjct: 165 EIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLT 221

Query: 175 ---------APECYKRTPISVKADVYGYGIVL 197
                    APE           D++  G+++
Sbjct: 222 TPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIM 253

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 14/63 (22%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMD-EFWTAKISDFGLAKLLSDKGCM---------- 174
           + + ++H      I H DIKPQN+L++ +  T K+ DFG AK L                
Sbjct: 152 RAVGFIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYR 208

Query: 175 APE 177
           APE
Sbjct: 209 APE 211

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 22/95 (23%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG-------C-----M 174
            I  +H       +H DIKP NIL+D     +++DFG    L   G             +
Sbjct: 174 AIDSVHRLG---YVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYL 230

Query: 175 APECYKRTPISVKADVYG-------YGIVLLETIC 202
           +PE  +          YG        G+   E   
Sbjct: 231 SPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFY 265

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 14/85 (16%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKISDFGLAKLLSDKG----C----- 173
           V + + + H+     +LH DIK +NIL+D      K+ DFG   LL D            
Sbjct: 158 VLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY 214

Query: 174 MAPECYKRTP-ISVKADVYGYGIVL 197
             PE  +        A V+  GI+L
Sbjct: 215 SPPEWIRYHRYHGRSAAVWSLGILL 239

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 13/62 (20%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------A 175
            GI +LH      I+H D+KP NI++    T KI DFGLA+       M          A
Sbjct: 138 CGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRA 194

Query: 176 PE 177
           PE
Sbjct: 195 PE 196

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 23/132 (17%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL-LSDKG------C-----M 174
            + +LH      I++ DIK +NIL+D      ++DFGL+K  ++D+       C     M
Sbjct: 171 ALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYM 227

Query: 175 APE--CYKRTPISVKADVYGYGIVLLETICCW-----ENMEIDASKPEEIILTNWV-YKC 226
           AP+      +      D +  G+++ E +        +  +   ++    IL +   Y  
Sbjct: 228 APDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQ 287

Query: 227 FINRELNKLVRG 238
            ++     L++ 
Sbjct: 288 EMSALAKDLIQR 299

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 17/87 (19%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGCM------ 174
           V  GI Y+H      I+H D+KP+NIL+   ++    KI DFGL+        M      
Sbjct: 130 VFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGT 186

Query: 175 ----APECYKRTPISVKADVYGYGIVL 197
               APE  +      K DV+  G++L
Sbjct: 187 AYYIAPEVLRG-TYDEKCDVWSAGVIL 212

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 13/62 (20%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------A 175
            GI +LH      I+H D+KP NI++    T KI DFGLA+       M          A
Sbjct: 175 CGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRA 231

Query: 176 PE 177
           PE
Sbjct: 232 PE 233

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA 165
            G+ Y+H      ILH D+KP N L+++  + K+ DFGLA
Sbjct: 167 VGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLA 203

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 13/62 (20%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCM----------A 175
            G+  LH+     ++H D+ P NIL+ +     I DF LA+  +               A
Sbjct: 145 LGLHVLHEAG---VVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRA 201

Query: 176 PE 177
           PE
Sbjct: 202 PE 203

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 27/111 (24%)

Query: 116 QRVRIALDVAK--------GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL 167
               +    A+         +  +H       +H D+KP N+L+D+    K++DFG    
Sbjct: 161 SNYDVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCMK 217

Query: 168 LSDKG-------C-----MAPECYKRTPISVK----ADVYGYGIVLLETIC 202
           ++ +G             ++PE  K            D +  G+ L E + 
Sbjct: 218 MNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV 268

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 20/93 (21%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKG-------C-----M 174
            I  +H       +H DIKP NILMD     +++DFG    L + G             +
Sbjct: 187 AIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYI 243

Query: 175 APECYKRTPISVK-----ADVYGYGIVLLETIC 202
           +PE  +             D +  G+ + E + 
Sbjct: 244 SPEILQAMEGGKGRYGPECDWWSLGVCMYEMLY 276

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA--KISDFGLAKLLSDKGCM-- 174
           + A  + + +  LH      I+HCD+KP+NIL+ +   +  K+ DFG +     +     
Sbjct: 204 KFAHSILQCLDALHKNR---IIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYI 260

Query: 175 ------APECYKRTPISVKADVYGYGIVLLE 199
                 APE        +  D++  G +L E
Sbjct: 261 QSRFYRAPEVILGARYGMPIDMWSLGCILAE 291

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 14/85 (16%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKISDFGLAKLLSDKG----C----- 173
           V   I + H      ++H DIK +NIL+D     AK+ DFG   LL D+           
Sbjct: 148 VVAAIQHCHSRG---VVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVY 204

Query: 174 MAPECYKRTP-ISVKADVYGYGIVL 197
             PE   R    ++ A V+  GI+L
Sbjct: 205 SPPEWISRHQYHALPATVWSLGILL 229

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 17/92 (18%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGCM- 174
           RI  DV   + Y H      + H D+KP+N L          K+ DFGLA        M 
Sbjct: 110 RIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMR 166

Query: 175 ---------APECYKRTPISVKADVYGYGIVL 197
                    +P+  +      + D +  G+++
Sbjct: 167 TKVGTPYYVSPQVLEG-LYGPECDEWSAGVMM 197

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 16/84 (19%)

Query: 127 GILYLHDECEPPILHCDIKPQNILMDEFWTA--KISDFGLAKLLSDKG-----C-----M 174
           G+ Y H      I H D+K +N L+D       KI DFG +K                 +
Sbjct: 128 GVSYCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYI 184

Query: 175 APECYKRTP-ISVKADVYGYGIVL 197
           APE   R       ADV+  G+ L
Sbjct: 185 APEVLLRQEYDGKIADVWSCGVTL 208

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 17/87 (19%)

Query: 124 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGCM------ 174
           +   + Y H +    ++H D+KP+NIL          KI DFGLA+L             
Sbjct: 133 MMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGT 189

Query: 175 ----APECYKRTPISVKADVYGYGIVL 197
               APE +KR  ++ K D++  G+V+
Sbjct: 190 ALYMAPEVFKR-DVTFKCDIWSAGVVM 215

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           +G+ Y+H      I+H D+KP N+ ++E    KI DFGLA+  +D
Sbjct: 143 RGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTAD 184

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPI 184
           + +  LH      ++H D+KP N+L++     K+ DFGLA+++ +      E   +   
Sbjct: 123 RAVKVLHGSN---VIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSG 178

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 41/302 (13%), Positives = 86/302 (28%), Gaps = 91/302 (30%)

Query: 11  WIARS--------SLCTKLRNFCRSSL-ND------RNSPRSKSVWSCMRALMATVNSPY 55
           ++           S+ T++    R  L ND       N  R +      +AL+    +  
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 56  -----------SPSRPLTLTSIVSR-----------VSWTTDIEVSSVAMRGSKPSTEAA 93
                      +      +   V             + W   + +       +  S E  
Sbjct: 153 VLIDGVLGSGKT-----WVALDVCLSYKVQCKMDFKIFW---LNL------KNCNSPETV 198

Query: 94  LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGIL--YLHDECEPPILHCDIKPQNILM 151
           L++   L Y I  +       +  +++ +   +  L   L  +     L        +++
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--------LVL 250

Query: 152 DEFWTAKISD-FGL-AKLL---SDKGCM-APECYKRTPISVKADVYGYGIVLLETICC-W 204
                AK  + F L  K+L     K           T IS+           ++++   +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 205 ENMEIDASKPEEIILTN-----------------WVYKCFINRELNKLVRGTEVDKKNLE 247
            +       P E++ TN                 W    + +   +KL   T + + +L 
Sbjct: 311 LDCRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKL---TTIIESSLN 364

Query: 248 NL 249
            L
Sbjct: 365 VL 366

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           +G+ Y+H      +LH D+KP N+L++     KI DFGLA++   
Sbjct: 139 RGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADP 180

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           KG+ Y+H      I+H D+KP N+ ++E    KI DFGLA+    
Sbjct: 139 KGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADS 180

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPIS 185
            G  ++H   E  I+H D+KP N L+++  + K+ DFGLA+ ++ +              
Sbjct: 140 LGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEE 196

Query: 186 VKADVYGYGIVLLE 199
                      L  
Sbjct: 197 PGPHNKNLKKQLTS 210

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD 170
           KG+ Y+H      ++H D+KP N+ ++E    KI DFGLA+    
Sbjct: 137 KGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHADA 178

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPIS 185
           K I YLH      +LH D+KP NIL++     K++DFGL++   +   +          +
Sbjct: 120 KVIKYLHSGG---LLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINEN 176

Query: 186 VKAD 189
            +  
Sbjct: 177 TENF 180

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLSDKGCMA 175
            +  DVA  + +LH++    I H D+KP+NIL    ++    KI DF L   +   G  +
Sbjct: 115 VVVQDVASALDFLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCS 171

Query: 176 P 176
           P
Sbjct: 172 P 172

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAK 166
            I   + + I YLH      I H D+KP+N+L          K++DFG AK
Sbjct: 121 EIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAK 168

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 8/54 (14%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK-----ISDFGLAK 166
           + IA+ +   + Y+H +    +++ D+KP+N L+            I DF LAK
Sbjct: 108 LMIAIQLISRMEYVHSKN---LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 158

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK-----ISDFGLAK 166
              A  +   +  +H++    +++ DIKP N L+    +       + DFG+ K
Sbjct: 109 AMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK 159

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMD-EFWTAKISDFGLA 165
           K + Y H      I+H D+KP N+++D E    ++ D+GLA
Sbjct: 141 KALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLA 178

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 4/46 (8%)

Query: 126 KGILYLHDECEPPILHCDIKPQNILMD-EFWTAKISDFGLAKLLSD 170
           +G+ Y+H      +LH D+KP N+ ++ E    KI DFGLA+++  
Sbjct: 131 RGLKYIHSA---NVLHRDLKPANLFINTEDLVLKIGDFGLARIMDP 173

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI--SDFGLAKLLSDKG 172
           ++A  +   + +LH+      +H ++  +NI +D    +++  + +G A      G
Sbjct: 163 QVACRLLDALEFLHENE---YVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSG 215

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA--KISDFGLA 165
           + A  +   +L+L    E  I+HCD+KP+NIL+     +  KI DFG +
Sbjct: 161 KFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSS 208

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI--SDFGLAKLLSDKG 172
           ++ + +   + Y+H+      +H DIK  N+L+      ++  +D+GL+      G
Sbjct: 155 QLGIRMLDVLEYIHENE---YVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNG 207

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK---ISDFGLAK 166
           + +A  +   I Y+H +     +H D+KP N LM          I DFGLAK
Sbjct: 108 LLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK 156

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 130 YLHDECEPPILHCDIKPQNILMDEFWTAKI--SDFGLAKLLSDKGCMAPECYK 180
           Y+H+      +H DIK  N+L++     ++   D+GLA     +G        
Sbjct: 167 YIHEHE---YVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAAD 216

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 39.9 bits (92), Expect = 5e-04
 Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 19/142 (13%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
                 I   +   +            H D+   N+L+ +    K+      K  +   C
Sbjct: 160 LATAKSILHQLTASLAVAEASLR--FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSC 217

Query: 174 MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN 233
                     + V    Y    +  + I  + ++ +D    E++   +  Y+  I R + 
Sbjct: 218 ---------GLQVSIIDYTLSRLERDGIVVFCDVSMD----EDLFTGDGDYQFDIYRLMK 264

Query: 234 KLVRGTEVDKKNLENLVKVGLW 255
           K       +     N+    LW
Sbjct: 265 KENNNRWGEYHPYSNV----LW 282

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 20/132 (15%), Positives = 51/132 (38%), Gaps = 21/132 (15%)

Query: 113 YWNQRVRIALDVAKGIL--------YLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL 164
             +    + L   K I+        YLH +C   I+H DIKP+NIL+       +++  +
Sbjct: 136 IKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCR--IIHTDIKPENILL------SVNEQYI 187

Query: 165 AKLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY 224
            +L ++        ++R+     +                  +E   ++  ++ + +   
Sbjct: 188 RRLAAE-----ATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGN 242

Query: 225 KCFINRELNKLV 236
            C++++   + +
Sbjct: 243 ACWVHKHFTEDI 254

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 118 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK---ISDFGLAK 166
           + +A  +   + ++H +     LH DIKP N LM     A    I DFGLAK
Sbjct: 106 LMLADQMINRVEFVHSKS---FLHRDIKPDNFLMGLGRRANQVYIIDFGLAK 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.95
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.9
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.8
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.64
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.33
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.03
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.83
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.67
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.39
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.05
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.93
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.86
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	97.66
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.4
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.22
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.06
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	95.66
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	95.33
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	95.22
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	94.15
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	92.9
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	89.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	88.37
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	87.54
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	85.25
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	83.83
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	81.14

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=5.9e-55  Score=374.63  Aligned_cols=235  Identities=20%  Similarity=0.201  Sum_probs=186.4

Q ss_pred             hhccccccCCCCCCCCcchhHHHH---HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR---ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~---~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      +++.....||+|+|  |.||+|..   .++|.++..    ...+.|.+|+.+|++++|||||+++|+|.+ +.++|||||
T Consensus        36 ~~l~l~~~iG~G~f--G~Vy~~~~~~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy  112 (307)
T 3omv_A           36 SEVMLSTRIGSGSF--GTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW  112 (307)
T ss_dssp             TSCCEEEECCCCSS--SEEEEEESSSEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred             HHeEEeeEEeeCCC--cEEEEEEECCcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEc
Confidence            34455677999999  99999921   112222211    223568899999999999999999998865 568999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec------
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL------  168 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~------  168 (274)
                      |++|+|.++|.. ....++|..++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++..      
T Consensus       113 ~~gGsL~~~l~~-~~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~  188 (307)
T 3omv_A          113 CEGSSLYKHLHV-QETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS  188 (307)
T ss_dssp             CSSCBHHHHHHT-SCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred             CCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccCCcc
Confidence            999999999986 456799999999999999999999999   9999999999999999999999999998642      


Q ss_pred             -------CCCCcCCCccccc---CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          169 -------SDKGCMAPECYKR---TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       169 -------~~~~~~ape~~~~---~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                             +|+.|||||++..   .+|+.++|||||||++|||++|+.||..... ..  .+.    .....+    ...+
T Consensus       189 ~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~-~~--~~~----~~~~~~----~~~p  257 (307)
T 3omv_A          189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN-RD--QII----FMVGRG----YASP  257 (307)
T ss_dssp             -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-HH--HHH----HHHHTT----CCCC
T ss_pred             eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCCh-HH--HHH----HHHhcC----CCCC
Confidence                   3788999999864   4689999999999999999999999964311 11  111    111111    1111


Q ss_pred             C--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          239 T--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       239 ~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .  ..+..++..+.+|+.+||+.||++|||+.||++.|
T Consensus       258 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L  295 (307)
T 3omv_A          258 DLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSI  295 (307)
T ss_dssp             CSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHH
T ss_pred             CcccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            1  34556778999999999999999999999998764

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=2e-55  Score=378.50  Aligned_cols=231  Identities=18%  Similarity=0.171  Sum_probs=188.8

Q ss_pred             cccccCCCCCCCCcchhHHHH-----------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           25 CRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        25 ~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      .-...||+|+|  |.||+|..           +++|.+...   ...++|.+|+.+|++++|||||+++|+|.+++..+|
T Consensus        29 ~~~~~lG~G~f--G~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l  106 (308)
T 4gt4_A           29 RFMEELGEDRF--GKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM  106 (308)
T ss_dssp             EEEEEEEECSS--CEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             eEeeEeccCCC--cEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence            33467999999  99999831           123333222   223568899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 048314           91 EAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT  156 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~  156 (274)
                      |||||++|||.++|....              ...++|..++.++.|++.||.|||+.   +|+||||||+|||++.++.
T Consensus       107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~  183 (308)
T 4gt4_A          107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLN  183 (308)
T ss_dssp             EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred             EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCCC
Confidence            999999999999997532              23599999999999999999999999   9999999999999999999


Q ss_pred             EEEeccccceec-------------CCCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHH
Q 048314          157 AKISDFGLAKLL-------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNW  222 (274)
Q Consensus       157 ~kl~d~g~~~~~-------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~  222 (274)
                      +||+|||+++..             +++.|+|||++....++.++|||||||++|||+| |..||....    ...+.  
T Consensus       184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~----~~~~~--  257 (308)
T 4gt4_A          184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS----NQDVV--  257 (308)
T ss_dssp             EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC----HHHHH--
T ss_pred             EEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC----HHHHH--
Confidence            999999998643             2567999999999999999999999999999998 899996431    11111  


Q ss_pred             HHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          223 VYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        ..+.++.      ..+.|..++..+.+|+.+||+.||++||||.||+++|
T Consensus       258 --~~i~~~~------~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L  301 (308)
T 4gt4_A          258 --EMIRNRQ------VLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRL  301 (308)
T ss_dssp             --HHHHTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --HHHHcCC------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence              1111111      1135667888999999999999999999999999875

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1e-55  Score=378.82  Aligned_cols=234  Identities=18%  Similarity=0.231  Sum_probs=190.1

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      ++|...+.||+|+|  |.||+|..           +++|.+...  ...++|.+|+++|++++|||||+++|+|.+++..
T Consensus        13 ~~~~l~~~lG~G~f--G~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~   90 (299)
T 4asz_A           13 HNIVLKRELGEGAF--GKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL   90 (299)
T ss_dssp             GGEEEEEEEEC--C--CCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred             HHeEEeeEEeeCCC--cEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEE
Confidence            46666788999999  99999821           223333222  2245688999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhC-----------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcE
Q 048314           89 STEAALDLPWDLAYIIFCS-----------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA  157 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~-----------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~  157 (274)
                      +||||||++|||.++|...           ....++|..++.++.|++.||.|||++   +|+||||||+|||++.++.+
T Consensus        91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~  167 (299)
T 4asz_A           91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLV  167 (299)
T ss_dssp             EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCE
T ss_pred             EEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcE
Confidence            9999999999999999763           234699999999999999999999999   99999999999999999999


Q ss_pred             EEeccccceec-------------CCCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHH
Q 048314          158 KISDFGLAKLL-------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWV  223 (274)
Q Consensus       158 kl~d~g~~~~~-------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~  223 (274)
                      ||+|||+++..             +++.|+|||++....|+.++|||||||++|||+| |+.||...   ... .+.   
T Consensus       168 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~---~~~-~~~---  240 (299)
T 4asz_A          168 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL---SNN-EVI---  240 (299)
T ss_dssp             EECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS---CHH-HHH---
T ss_pred             EECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCC---CHH-HHH---
Confidence            99999998642             2567999999999999999999999999999998 89999643   111 111   


Q ss_pred             HHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          224 YKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       .....+.      ..+.|..+++++.+|+.+||+.||++|||++||++.|
T Consensus       241 -~~i~~~~------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L  284 (299)
T 4asz_A          241 -ECITQGR------VLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLL  284 (299)
T ss_dssp             -HHHHHTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -HHHHcCC------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence             1111111      1135667788999999999999999999999998754

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=4.2e-55  Score=379.78  Aligned_cols=234  Identities=18%  Similarity=0.181  Sum_probs=188.8

Q ss_pred             hhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      ++|.....||+|+|  |.||+|.           .+++|.+...  ...++|.+|+++|++++|||||+++|+|.+.+..
T Consensus        41 ~d~~l~~~LG~G~f--G~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~  118 (329)
T 4aoj_A           41 RDIVLKWELGEGAF--GKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPL  118 (329)
T ss_dssp             GGEEEEEEEEECSS--EEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred             HHeEEEEEEccCCC--cEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            45666677999999  9999982           1223333322  2245688999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 048314           89 STEAALDLPWDLAYIIFCSA-------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW  155 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~-------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~  155 (274)
                      +||||||++|+|.+++....             ...++|..++.++.|++.||.|||+.   +|+||||||+|||++.++
T Consensus       119 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~  195 (329)
T 4aoj_A          119 LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGL  195 (329)
T ss_dssp             EEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTT
T ss_pred             EEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCC
Confidence            99999999999999997642             24599999999999999999999999   999999999999999999


Q ss_pred             cEEEeccccceec-------------CCCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHH
Q 048314          156 TAKISDFGLAKLL-------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTN  221 (274)
Q Consensus       156 ~~kl~d~g~~~~~-------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~  221 (274)
                      .+||+|||+++..             +++.|||||++....++.++|||||||++|||+| |+.||....   . ..+. 
T Consensus       196 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~---~-~~~~-  270 (329)
T 4aoj_A          196 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS---N-TEAI-  270 (329)
T ss_dssp             EEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC---H-HHHH-
T ss_pred             cEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC---H-HHHH-
Confidence            9999999998743             2567999999999999999999999999999998 899996431   1 1111 


Q ss_pred             HHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          222 WVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                         ..+..+.      ..+.|..+++++.+|+.+||+.||++|||+.||+++|
T Consensus       271 ---~~i~~g~------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L  314 (329)
T 4aoj_A          271 ---DCITQGR------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARL  314 (329)
T ss_dssp             ---HHHHHTC------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHH
T ss_pred             ---HHHHcCC------CCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHH
Confidence               1111111      1135667788999999999999999999999998765

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=7.2e-54  Score=373.15  Aligned_cols=233  Identities=19%  Similarity=0.201  Sum_probs=187.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      .++|...+.||+|+|  |.||++.      ..++|.+...    ...+.+.+|+++|++++|||||++++++.+++..||
T Consensus        23 me~Y~~~~~lG~G~f--g~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yi  100 (350)
T 4b9d_A           23 MEKYVRLQKIGEGSF--GKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYI  100 (350)
T ss_dssp             CCCEEEEEEC--------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             ccceEEeEEEecCCC--eEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEE
Confidence            357778889999999  9999992      1222322221    123457899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      |||||++|+|.+++.......+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++..  
T Consensus       101 VmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~  177 (350)
T 4b9d_A          101 VMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS  177 (350)
T ss_dssp             EEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred             EEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecC
Confidence            99999999999999875556789999999999999999999999   9999999999999999999999999999754  


Q ss_pred             ---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               +|+.|+|||++.+..|+.++|||||||++|||++|+.||...   ... .+   +.. ..++..      .
T Consensus       178 ~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~---~~~-~~---~~~-i~~~~~------~  243 (350)
T 4b9d_A          178 TVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG---SMK-NL---VLK-IISGSF------P  243 (350)
T ss_dssp             HHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS---SHH-HH---HHH-HHHTCC------C
T ss_pred             CcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc---CHH-HH---HHH-HHcCCC------C
Confidence                     388999999999999999999999999999999999999643   111 11   111 111111      1


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+...+.++.+||.+||+.||++|||++|+++
T Consensus       244 ~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          244 PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            244556788999999999999999999999986

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=8.7e-53  Score=365.78  Aligned_cols=230  Identities=17%  Similarity=0.150  Sum_probs=190.2

Q ss_pred             hhccccccCCCCCCCCcchhHH-------HHHHHHH-hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC-------MRALMAT-VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~-~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ..|.....||+|+|  |.||+|       .+|+|.. .......+.+.+|+.+|++++|||||++++++.+++..|||||
T Consensus        74 ~~y~~~~~iG~G~f--G~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmE  151 (346)
T 4fih_A           74 SYLDNFIKIGEGST--GIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME  151 (346)
T ss_dssp             GTEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             HhcEEeEEeecCcC--eEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            34777788999999  999999       2233322 2223455668899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-----  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-----  168 (274)
                      ||++|+|.+++..   ..+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++..     
T Consensus       152 y~~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~  225 (346)
T 4fih_A          152 FLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP  225 (346)
T ss_dssp             CCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC
T ss_pred             CCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCCC
Confidence            9999999999975   4699999999999999999999999   9999999999999999999999999998753     


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-cc
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-EV  241 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  241 (274)
                            +|+.|+|||++....|+.++||||+||++|||++|..||...   . ...+..    .+.+.     ..+. ..
T Consensus       226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~---~-~~~~~~----~i~~~-----~~~~~~~  292 (346)
T 4fih_A          226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE---P-PLKAMK----MIRDN-----LPPRLKN  292 (346)
T ss_dssp             CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS---C-HHHHHH----HHHHS-----SCCCCSC
T ss_pred             cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc---C-HHHHHH----HHHcC-----CCCCCCc
Confidence                  367899999999999999999999999999999999999643   1 111111    11111     1111 23


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +...++++.+||.+||+.||++|||++|+++
T Consensus       293 ~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          293 LHKVSPSLKGFLDRLLVRDPAQRATAAELLK  323 (346)
T ss_dssp             GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            3455678999999999999999999999986

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.2e-52  Score=357.70  Aligned_cols=227  Identities=19%  Similarity=0.184  Sum_probs=179.3

Q ss_pred             ccccCCCCCCCCcchhHHH-------HHHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEe----CCcceEE
Q 048314           26 RSSLNDRNSPRSKSVWSCM-------RALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR----GSKPSTE   91 (274)
Q Consensus        26 ~~~~~g~g~~~~g~vy~~~-------~~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv   91 (274)
                      -...||+|+|  |.||+|.       +++|....   .....++|.+|+++|++++|||||+++++|.+    ++..+||
T Consensus        30 ~~~~iG~G~f--g~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lv  107 (290)
T 3fpq_A           30 FDIEIGRGSF--KTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEECSS--EEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             eeeEEecCcC--cEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence            3456999999  9999981       22221111   11223568899999999999999999999865    3457999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--cccCCCCCCceEEcC-CCcEEEeccccceec
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDE-FWTAKISDFGLAKLL  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~~-~~~~kl~d~g~~~~~  168 (274)
                      ||||++|+|.+++..  .+.+++..+..++.|++.||.|||++   +  |+||||||+|||++. ++.+||+|||+++..
T Consensus       108 mEy~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~ylH~~---~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~  182 (290)
T 3fpq_A          108 TELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK  182 (290)
T ss_dssp             EECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred             EeCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCEEecccChhheeEECCCCCEEEEeCcCCEeC
Confidence            999999999999986  45799999999999999999999998   7  999999999999974 789999999999643


Q ss_pred             ---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               +|+.|||||++.+ .|+.++|||||||++|||++|+.||..... .  ..+.    .....+     ..+.
T Consensus       183 ~~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~-~--~~~~----~~i~~~-----~~~~  249 (290)
T 3fpq_A          183 RASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN-A--AQIY----RRVTSG-----VKPA  249 (290)
T ss_dssp             CTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS-H--HHHH----HHHTTT-----CCCG
T ss_pred             CCCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc-H--HHHH----HHHHcC-----CCCC
Confidence                     4889999998864 699999999999999999999999964311 1  1111    111111     1111


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+...++++.+|+.+||+.||++|||++|+++
T Consensus       250 ~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          250 SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            233344567999999999999999999999986

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=7.6e-53  Score=361.12  Aligned_cols=229  Identities=16%  Similarity=0.146  Sum_probs=191.1

Q ss_pred             hhhccccccCCCCCCCCcchhHH-------HHHH----HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC-------MRAL----MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~-------~~~~----~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.||+|+|  |.||++       .+|+    +.........+.+.+|+++|++++|||||++++++.+++..|
T Consensus        31 ~~dy~i~~~lG~G~f--g~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~y  108 (311)
T 4aw0_A           31 PEDFKFGKILGEGSF--STVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLY  108 (311)
T ss_dssp             GGGEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             ccccEEEEEEecccC--eEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE
Confidence            367999999999999  999999       1111    112223334566889999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      ||||||++|+|.+++..  .+.+++...+.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++.. 
T Consensus       109 ivmEy~~gG~L~~~i~~--~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~  183 (311)
T 4aw0_A          109 FGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLS  183 (311)
T ss_dssp             EEECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecC
Confidence            99999999999999986  46799999999999999999999999   9999999999999999999999999999753 


Q ss_pred             ------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          169 ------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       169 ------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                                  +|+.|+|||++.+..|+.++||||+||++|+|++|+.||...   ... .+.    ....+..     
T Consensus       184 ~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~---~~~-~~~----~~i~~~~-----  250 (311)
T 4aw0_A          184 PESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG---NEG-LIF----AKIIKLE-----  250 (311)
T ss_dssp             TTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS---SHH-HHH----HHHHHTC-----
T ss_pred             CCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC---CHH-HHH----HHHHcCC-----
Confidence                        377899999999999999999999999999999999999643   111 111    1111111     


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHH
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVV  271 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl  271 (274)
                        ..+|...++++.+|+.+||+.||++|||++|++
T Consensus       251 --~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          251 --YDFPEKFFPKARDLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             --CCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred             --CCCCcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence              124555667899999999999999999999863

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2.1e-52  Score=362.34  Aligned_cols=231  Identities=18%  Similarity=0.109  Sum_probs=188.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      .+.|.....||+|+|  |.||++.      ..++|.+..   .....+|+.+|++++|||||++++++.+++..+|||||
T Consensus        57 ~~~~~~~~~lG~G~f--G~Vy~a~~~~~g~~vAiK~i~~---~~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy  131 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSF--GEVHRMKDKQTGFQCAVKKVRL---EVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL  131 (336)
T ss_dssp             TTEEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEET---TTCCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhheEeCcEeccCCC--eEEEEEEECCCCCEEEEEEECH---HHhHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence            345666677999999  9999992      122333322   12235899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEeccccceec-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKISDFGLAKLL-----  168 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~d~g~~~~~-----  168 (274)
                      |++|+|.+++..  .+.+++..++.++.|++.||.|||++   +|+||||||+|||++.++ .+||+|||+++..     
T Consensus       132 ~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~  206 (336)
T 4g3f_A          132 LEGGSLGQLIKQ--MGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGL  206 (336)
T ss_dssp             CTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC-----
T ss_pred             cCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCc
Confidence            999999999986  45799999999999999999999999   999999999999999887 5999999999642     


Q ss_pred             -----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 -----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 -----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                                 +|+.|||||++.+..|+.++|||||||++|||++|+.||..........       . +.....    .
T Consensus       207 ~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~-------~-i~~~~~----~  274 (336)
T 4g3f_A          207 GKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCL-------K-IASEPP----P  274 (336)
T ss_dssp             -------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHH-------H-HHHSCC----G
T ss_pred             ccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHH-------H-HHcCCC----C
Confidence                       4788999999999999999999999999999999999997542211110       0 011110    0


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ....+...++.+.+++.+||+.||++|||+.|+++.
T Consensus       275 ~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~  310 (336)
T 4g3f_A          275 IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRK  310 (336)
T ss_dssp             GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             chhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence            113455677889999999999999999999999865

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.2e-51  Score=367.02  Aligned_cols=230  Identities=17%  Similarity=0.144  Sum_probs=190.2

Q ss_pred             hhccccccCCCCCCCCcchhHH-------HHHHHHHh-cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC-------MRALMATV-NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      +.|.....||+|+|  |.||+|       .+|+|... ......+.+.+|+.+|++++|||||++++++.+.+..|||||
T Consensus       151 ~~y~~~~~iG~G~f--G~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmE  228 (423)
T 4fie_A          151 SYLDNFIKIGEGST--GIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME  228 (423)
T ss_dssp             GTEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HhcEeeeEeccCcC--cEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEe
Confidence            45777888999999  999999       22333221 222445668899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-----  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-----  168 (274)
                      ||++|+|.+++..   ..+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++..     
T Consensus       229 y~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~  302 (423)
T 4fie_A          229 FLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP  302 (423)
T ss_dssp             CCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC
T ss_pred             CCCCCcHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCCc
Confidence            9999999999975   4699999999999999999999999   9999999999999999999999999998753     


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-cc
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-EV  241 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  241 (274)
                            +|+.|||||++....|+.++|||||||++|||++|..||...   . ...+..    .+...     ..+. ..
T Consensus       303 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~---~-~~~~~~----~i~~~-----~~~~~~~  369 (423)
T 4fie_A          303 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE---P-PLKAMK----MIRDN-----LPPRLKN  369 (423)
T ss_dssp             CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS---C-HHHHHH----HHHHS-----CCCCCSC
T ss_pred             cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc---C-HHHHHH----HHHcC-----CCCCCcc
Confidence                  278899999999999999999999999999999999999643   1 111111    11111     1111 23


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +...+.++.+||.+||+.||++|||++|+++
T Consensus       370 ~~~~s~~~~dli~~~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          370 LHKVSPSLKGFLDRLLVRDPAQRATAAELLK  400 (423)
T ss_dssp             TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            3455678999999999999999999999986

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1.2e-51  Score=348.79  Aligned_cols=229  Identities=19%  Similarity=0.197  Sum_probs=181.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcC-----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNS-----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.||+|+|  |.||++.      ..++|.+..     ....+++.+|+++|++++|||||++++++.+++..+
T Consensus        12 ig~Y~i~~~lG~G~f--g~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~   89 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSF--GKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEII   89 (275)
T ss_dssp             --CCEEEEEEEC-----CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             eeCeEEEEEEecCcC--eEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE
Confidence            368888999999999  9999992      112222221     122345789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      +||||| +|+|.+++..  .+.+++...+.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++.. 
T Consensus        90 ivmEy~-~g~L~~~l~~--~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~  163 (275)
T 3hyh_A           90 MVIEYA-GNELFDYIVQ--RDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMT  163 (275)
T ss_dssp             EEEECC-CEEHHHHHHH--SCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC----
T ss_pred             EEEeCC-CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecC
Confidence            999999 6899999986  45799999999999999999999999   9999999999999999999999999999753 


Q ss_pred             ---------CCCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          169 ---------SDKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                               +|+.|+|||++.+..+ +.++||||+||++|+|++|+.||...   ... .+.    ....++       .
T Consensus       164 ~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~---~~~-~~~----~~i~~~-------~  228 (275)
T 3hyh_A          164 DGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE---SIP-VLF----KNISNG-------V  228 (275)
T ss_dssp             -----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS---SHH-HHH----HHHHHT-------C
T ss_pred             CCCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC---CHH-HHH----HHHHcC-------C
Confidence                     3788999999988776 57999999999999999999999643   111 111    111111       1


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...|...++++.+++.+||+.||++|||++|+++
T Consensus       229 ~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          229 YTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             CCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            1244556778999999999999999999999986

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.8e-52  Score=366.19  Aligned_cols=236  Identities=17%  Similarity=0.196  Sum_probs=190.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCC---CCCCcHHHHHHHHhcCCC-CccceEeEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSP---YSPSRPLTLTSIVSRVSW-TTDIEVSSVAMRG   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~   85 (274)
                      .++|...+.||+|+|  |.||+|.           .+++|.+...   ...+.|.+|+++|++++| ||||+++|+|.+.
T Consensus        63 ~~~~~l~~~LG~G~f--G~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~  140 (353)
T 4ase_A           63 RDRLKLGKPLGRGAF--GQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKP  140 (353)
T ss_dssp             GGGEEEEEEEEECSS--EEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCT
T ss_pred             HHHeEEeeEEecCCC--eEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEec
Confidence            456777888999999  9999982           1222322222   123457899999999975 9999999999765


Q ss_pred             -CcceEEEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceE
Q 048314           86 -SKPSTEAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNIL  150 (274)
Q Consensus        86 -~~~~lv~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil  150 (274)
                       +..+||||||++|+|.++|....              ...++|..++.++.|++.||.|||++   +|+||||||+|||
T Consensus       141 ~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~NIL  217 (353)
T 4ase_A          141 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNIL  217 (353)
T ss_dssp             TSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEE
T ss_pred             CCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccCcccee
Confidence             56899999999999999997532              23489999999999999999999999   9999999999999


Q ss_pred             EcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhh
Q 048314          151 MDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEE  216 (274)
Q Consensus       151 ~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~  216 (274)
                      ++.++.+||+|||+++...             ++.|||||++....|+.++|||||||++|||+| |..||........ 
T Consensus       218 l~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~-  296 (353)
T 4ase_A          218 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-  296 (353)
T ss_dssp             ECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH-
T ss_pred             eCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHH-
Confidence            9999999999999997542             567999999999999999999999999999998 8999964422111 


Q ss_pred             HHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          217 IILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        +    .....++.     + .+.|..+++++.+++.+||+.||++|||+.||++.|
T Consensus       297 --~----~~~i~~g~-----~-~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L  342 (353)
T 4ase_A          297 --F----CRRLKEGT-----R-MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  342 (353)
T ss_dssp             --H----HHHHHHTC-----C-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --H----HHHHHcCC-----C-CCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHH
Confidence              1    11111111     1 135566778999999999999999999999999864

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=4.7e-52  Score=355.90  Aligned_cols=229  Identities=18%  Similarity=0.112  Sum_probs=184.3

Q ss_pred             hhccccccCCCCCCCCcchhHHHH---------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      ++|...+.||+|+|  |.||++..         .++|.+..    .....++.+|+.+|++++|||||++++++.+++..
T Consensus        24 ~~Y~i~~~lG~G~f--g~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~  101 (304)
T 3ubd_A           24 SQFELLKVLGQGSF--GKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKL  101 (304)
T ss_dssp             GGEEEEEEEECGGG--CEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEE
T ss_pred             cccEEEEEEecCCC--eEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEE
Confidence            57888999999999  99998721         12332221    13345688999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++|||||++|+|.+++..  .+.+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++..
T Consensus       102 ~ivmEy~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~  176 (304)
T 3ubd_A          102 YLILDFLRGGDLFTRLSK--EVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKES  176 (304)
T ss_dssp             EEEECCCTTCEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC-
T ss_pred             EEEEEcCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceec
Confidence            999999999999999986  45799999999999999999999999   9999999999999999999999999999742


Q ss_pred             -----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 -----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 -----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                                 +|+.|+|||++....|+.++||||+||++|||++|+.||...   ... .+..    ...+.       
T Consensus       177 ~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~---~~~-~~~~----~i~~~-------  241 (304)
T 3ubd_A          177 IDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK---DRK-ETMT----MILKA-------  241 (304)
T ss_dssp             ----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS---SHH-HHHH----HHHHC-------
T ss_pred             cCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc---CHH-HHHH----HHHcC-------
Confidence                       378899999999999999999999999999999999999643   111 1111    11111       


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCCh-----hhHHh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSM-----KCVVM  272 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~-----~evl~  272 (274)
                      ....|...++++.+|+.+||+.||++|||+     +|+++
T Consensus       242 ~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~  281 (304)
T 3ubd_A          242 KLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKR  281 (304)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred             CCCCCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence            113455667889999999999999999995     57764

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=6.9e-52  Score=356.44  Aligned_cols=246  Identities=18%  Similarity=0.148  Sum_probs=180.4

Q ss_pred             hccccccCCCCCCCCcchhHH----HHHHHHHhcCCCCCCcHH--HHHHHHhcCCCCccceEeEEEEeCC----cceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSC----MRALMATVNSPYSPSRPL--TLTSIVSRVSWTTDIEVSSVAMRGS----KPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~----~~~~~~~~~~~~~~~~~~--~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~   92 (274)
                      ++.-...||+|+|  |.||+|    ..+++|.+... ..+.+.  .|+..+.+++|||||+++|+|.+++    .++|||
T Consensus         4 ~i~L~~~iG~G~f--G~Vy~~~~~g~~VAvK~l~~~-~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~   80 (303)
T 3hmm_A            4 TIVLQESIGKGRF--GEVWRGKWRGEEVAVKIFSSR-EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GEEEEEEEEECSS--SEEEEEEETTEEEEEEEECGG-GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             EEEEEEEEeeCCC--eEEEEEEECCEEEEEEEECcc-chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence            4455678999999  999998    11222222221 222333  4666667899999999999998654    579999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----CCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~-----~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      |||++|||.+++..   ..++|..+..++.|++.||.|||+++     .++|+||||||+|||++.++.+||+|||+++.
T Consensus        81 Ey~~~gsL~~~l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~  157 (303)
T 3hmm_A           81 DYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  157 (303)
T ss_dssp             ECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             cCCCCCcHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcc
Confidence            99999999999986   46999999999999999999999752     34899999999999999999999999999864


Q ss_pred             c---------------CCCCcCCCcccccC------CCccccceeehhHhHHHHhhcCCCccccCCCh---hhH----HH
Q 048314          168 L---------------SDKGCMAPECYKRT------PISVKADVYGYGIVLLETICCWENMEIDASKP---EEI----IL  219 (274)
Q Consensus       168 ~---------------~~~~~~ape~~~~~------~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~---~~~----~~  219 (274)
                      .               +|+.|+|||++.+.      .++.++|||||||++|||++|..|+.......   ...    ..
T Consensus       158 ~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~  237 (303)
T 3hmm_A          158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS  237 (303)
T ss_dssp             EETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred             ccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccch
Confidence            2               37789999998754      36789999999999999999988875321110   000    00


Q ss_pred             HHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+............+.....+...+..+.+|+.+||+.||++||||.||++.|
T Consensus       238 ~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L  292 (303)
T 3hmm_A          238 VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTL  292 (303)
T ss_dssp             HHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHH
Confidence            0011111111111111111122345677899999999999999999999998865

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.3e-49  Score=341.21  Aligned_cols=231  Identities=16%  Similarity=0.207  Sum_probs=176.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC-----
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS-----   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-----   86 (274)
                      .++|...+.||+|+|  |.||++.      ..++|.+...   ...+.+.+|+++|++++|||||++++++.+.+     
T Consensus         4 l~dy~~~~~lG~G~f--g~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~   81 (299)
T 4g31_A            4 LTDFEPIQCLGRGGF--GVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKL   81 (299)
T ss_dssp             HHHEEEEEEEEECC----EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-----
T ss_pred             chhCEEeeEEecCCC--eEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccc
Confidence            457888999999999  9999982      1122222211   12345789999999999999999999987544     


Q ss_pred             -------cceEEEEeCCCCCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 048314           87 -------KPSTEAALDLPWDLAYIIFCSAE-RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK  158 (274)
Q Consensus        87 -------~~~lv~e~~~~gsL~~~l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~k  158 (274)
                             ..++|||||++|+|.+++..... ...++..++.++.|++.||.|||++   +|+||||||+|||++.++.+|
T Consensus        82 ~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vK  158 (299)
T 4g31_A           82 QPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVK  158 (299)
T ss_dssp             -----CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEE
T ss_pred             cccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEE
Confidence                   36899999999999999986322 2367788899999999999999999   999999999999999999999


Q ss_pred             Eeccccceec-----------------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChh
Q 048314          159 ISDFGLAKLL-----------------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPE  215 (274)
Q Consensus       159 l~d~g~~~~~-----------------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~  215 (274)
                      |+|||+++..                       +|+.|||||++.+..|+.++|||||||++|||++   ||...   ..
T Consensus       159 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~---~~  232 (299)
T 4g31_A          159 VGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQ---ME  232 (299)
T ss_dssp             ECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSH---HH
T ss_pred             EccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCc---cH
Confidence            9999998642                       5788999999999999999999999999999995   66422   11


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          216 EIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....   + ....+...     + +......+.+.+++.+||+.||++|||+.|+++
T Consensus       233 ~~~~---~-~~~~~~~~-----p-~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          233 RVRT---L-TDVRNLKF-----P-PLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HHHH---H-HHHHTTCC-----C-HHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHH---H-HHHhcCCC-----C-CCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            1000   0 00011100     0 112234456789999999999999999999986

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=3.5e-47  Score=334.27  Aligned_cols=241  Identities=15%  Similarity=0.124  Sum_probs=186.0

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH---------HHHHHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcc
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~   88 (274)
                      ...+.|...+.||+|+|  |.||++..         .++|.+.......++.+|+++|+.+ +|||||++++++.+.++.
T Consensus        18 ~l~~~Y~i~~~lG~G~f--g~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~   95 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTF--SSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV   95 (361)
T ss_dssp             GGGGTCEEEEEEEECSS--EEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred             CccCcEEEEEEEecccC--cEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence            34567888999999999  99998821         2233333333445677999999998 599999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcEEEecccccee
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKISDFGLAKL  167 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~d~g~~~~  167 (274)
                      ++|||||++|+|.+++.     .+++..++.++.|++.||.|||++   +|+||||||+|||++.+ +.+||+|||+++.
T Consensus        96 ~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~  167 (361)
T 4f9c_A           96 VIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLAQG  167 (361)
T ss_dssp             EEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             EEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCCcc
Confidence            99999999999999984     489999999999999999999999   99999999999999876 7999999999863


Q ss_pred             ---------------------------------------cCCCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCc
Q 048314          168 ---------------------------------------LSDKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENM  207 (274)
Q Consensus       168 ---------------------------------------~~~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~  207 (274)
                                                             .+|+.|+|||++.+. .|+.++||||+||++|||++|+.||
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf  247 (361)
T 4f9c_A          168 THDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPF  247 (361)
T ss_dssp             CTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             cCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCC
Confidence                                                   247889999998775 4889999999999999999999999


Q ss_pred             cccCCChhhHHHHHHHHHHHhhhh-------------------------hhhhhc------------------CCccCHH
Q 048314          208 EIDASKPEEIILTNWVYKCFINRE-------------------------LNKLVR------------------GTEVDKK  244 (274)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~------------------~~~~~~~  244 (274)
                      ..........   ..+........                         ..+.+.                  ..+....
T Consensus       248 ~~~~~~~~~l---~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  324 (361)
T 4f9c_A          248 YKASDDLTAL---AQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNE  324 (361)
T ss_dssp             SCCSSHHHHH---HHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTT
T ss_pred             CCCCCHHHHH---HHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhcccccccccccccccccccccccccc
Confidence            6542221111   11100000000                         000000                  0011123


Q ss_pred             HHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          245 NLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .++++.+|+.+||+.||++|||++|+++
T Consensus       325 is~~a~DLl~~lL~~dP~~R~ta~eaL~  352 (361)
T 4f9c_A          325 VPDEAYDLLDKLLDLNPASRITAEEALL  352 (361)
T ss_dssp             CCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             CCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            3567899999999999999999999986

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-46  Score=334.69  Aligned_cols=239  Identities=16%  Similarity=0.169  Sum_probs=182.1

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEe------C
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR------G   85 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~   85 (274)
                      ++|...+.||+|+|  |.||+|.      ..++|.+...    ...+.+.+|+++|++++|||||++++++..      .
T Consensus        54 ~~Y~~~~~lG~G~f--G~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~  131 (398)
T 4b99_A           54 DEYEIIETIGNGAY--GVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEF  131 (398)
T ss_dssp             SSEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTC
T ss_pred             CCeEEEEEEecccC--eEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccC
Confidence            35777889999999  9999991      1222322222    123456789999999999999999999754      3


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      +..|||||||. |+|.+++..  .+.+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+|++|||++
T Consensus       132 ~~~~ivmE~~~-g~L~~~i~~--~~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla  205 (398)
T 4b99_A          132 KSVYVVLDLME-SDLHQIIHS--SQPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMA  205 (398)
T ss_dssp             CCEEEEEECCS-EEHHHHHTS--SSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             CEEEEEEeCCC-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeeccee
Confidence            57899999996 789999975  56799999999999999999999999   9999999999999999999999999998


Q ss_pred             eec---------------CCCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh
Q 048314          166 KLL---------------SDKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN  229 (274)
Q Consensus       166 ~~~---------------~~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                      +..               +|+.|+|||++.+. .++.++||||+||++|||++|+.||....    .......+......
T Consensus       206 ~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~----~~~~l~~I~~~~g~  281 (398)
T 4b99_A          206 RGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKN----YVHQLQLIMMVLGT  281 (398)
T ss_dssp             BCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSS----HHHHHHHHHHHHCC
T ss_pred             eecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCC----HHHHHHHHHHhcCC
Confidence            642               37789999998765 56899999999999999999999996431    11111111111000


Q ss_pred             h-----------hhhhhh---cCC-ccC-----HHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          230 R-----------ELNKLV---RGT-EVD-----KKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       230 ~-----------~~~~~~---~~~-~~~-----~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .           .....+   .+. ..+     ...+.++.+|+.+||+.||++|||+.|+++
T Consensus       282 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  344 (398)
T 4b99_A          282 PSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR  344 (398)
T ss_dssp             CCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            0           000000   000 111     123567899999999999999999999986

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1e-45  Score=343.40  Aligned_cols=233  Identities=21%  Similarity=0.207  Sum_probs=186.6

Q ss_pred             hhhccccccCCCCCCCCcchhHH-------HHHH----HHHhcCCCCCCcHH---HHHHHHhcCCCCccceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC-------MRAL----MATVNSPYSPSRPL---TLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~-------~~~~----~~~~~~~~~~~~~~---~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      .++|...++||+|+|  |.||++       .+|+    +..+..........   +++.+++.++|||||++++++.+.+
T Consensus       188 lddf~i~k~LG~G~f--G~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~  265 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGF--GEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD  265 (689)
T ss_dssp             GGGEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS
T ss_pred             hHHeEEEEEEecccC--eEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECC
Confidence            478988999999999  999998       1111    11222222222233   4467778889999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..|||||||+||+|.++|..  .+.+++..++.++.||+.||.|||++   +|+||||||+|||++.++++||+|||+++
T Consensus       266 ~lylVmEy~~GGdL~~~l~~--~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~  340 (689)
T 3v5w_A          266 KLSFILDLMNGGDLHYHLSQ--HGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLAC  340 (689)
T ss_dssp             EEEEEECCCCSCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEEEecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceee
Confidence            99999999999999999986  46799999999999999999999999   99999999999999999999999999997


Q ss_pred             ec---------CCCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          167 LL---------SDKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       167 ~~---------~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      ..         +|+.|+|||++.. ..|+.++|+||+||++|||++|..||......... .+..    ...       .
T Consensus       341 ~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~-~i~~----~i~-------~  408 (689)
T 3v5w_A          341 DFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH-EIDR----MTL-------T  408 (689)
T ss_dssp             ECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHH-HHHH----HHH-------H
T ss_pred             ecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHH-HHHH----hhc-------C
Confidence            53         3788999999975 57999999999999999999999999754222211 1110    000       1


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCC-----hhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPS-----MKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~evl~  272 (274)
                      .+...|...++++.+||.+||+.||++|++     ++||++
T Consensus       409 ~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~  449 (689)
T 3v5w_A          409 MAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  449 (689)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred             CCCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence            112355566788999999999999999998     577754

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=6e-46  Score=322.05  Aligned_cols=263  Identities=29%  Similarity=0.449  Sum_probs=212.3

Q ss_pred             hhhhhhhHHHHhhhccccccCCCCCCCCcchhHHHH-----HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEE
Q 048314           10 AWIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSV   81 (274)
Q Consensus        10 ~~~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~   81 (274)
                      ..|+..++....++|...+.+|.|+|  |.||+|..     .++|.+...   .....+.+|+.++++++||||++++++
T Consensus        18 ~~~~~~~~~~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~   95 (326)
T 3uim_A           18 KRFSLRELQVASDNFSNKNILGRGGF--GKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF   95 (326)
T ss_dssp             EECCTHHHHTTTTSSCSTTEEECCSS--SEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred             ceecHHHHHHHhhccccceeEecCCC--cEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence            45789999999999999999999999  99999821     122222211   234468899999999999999999999


Q ss_pred             EEeCCcceEEEEeCCCCCHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 048314           82 AMRGSKPSTEAALDLPWDLAYIIFCSAE--RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI  159 (274)
Q Consensus        82 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~--~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl  159 (274)
                      +.+.+..++||||+.+|+|.+++.....  ..+++..++.++.|++.||.|||+.+.++++|+||||+||+++.++.++|
T Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl  175 (326)
T 3uim_A           96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVV  175 (326)
T ss_dssp             ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEE
T ss_pred             EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEe
Confidence            9999999999999999999999987432  34999999999999999999999986678999999999999999999999


Q ss_pred             eccccceec------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccC-CChhhHHHHHHHHHH
Q 048314          160 SDFGLAKLL------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDA-SKPEEIILTNWVYKC  226 (274)
Q Consensus       160 ~d~g~~~~~------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~-~~~~~~~~~~~~~~~  226 (274)
                      +|||++...            +++.|+|||.+....++.++||||||+++|+|++|..||.... ..........|....
T Consensus       176 ~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~  255 (326)
T 3uim_A          176 GDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGL  255 (326)
T ss_dssp             CCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTT
T ss_pred             ccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHH
Confidence            999998754            3667999999988889999999999999999999999996321 011111223333333


Q ss_pred             HhhhhhhhhhcCC---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          227 FINRELNKLVRGT---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       227 ~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..........+..   ..+...+..+.+++.+||+.||++|||+.||+++|
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L  306 (326)
T 3uim_A          256 LKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML  306 (326)
T ss_dssp             TSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHH
T ss_pred             hhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHh
Confidence            2333333333322   46778889999999999999999999999999875

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=2.5e-46  Score=347.03  Aligned_cols=234  Identities=14%  Similarity=0.101  Sum_probs=188.4

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ++|...+.||+|+|  |.||++..      .++|.+...  ...+.+.+|+.+|++++|||||++++++.+.+..+||||
T Consensus       157 ~~Y~i~~~lG~G~f--g~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E  234 (573)
T 3uto_A          157 DHYDIHEELGTGAF--GVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYE  234 (573)
T ss_dssp             GTEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cccEEEEEEeeccC--eEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence            57888889999999  99999821      112222222  223456799999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC--CcEEEeccccceec---
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF--WTAKISDFGLAKLL---  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~--~~~kl~d~g~~~~~---  168 (274)
                      ||++|+|.+++.. ..+.+++..+..++.|++.||.|||++   +|+||||||+|||++.+  +.+||+|||+++..   
T Consensus       235 ~~~gg~L~~~i~~-~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~  310 (573)
T 3uto_A          235 FMSGGELFEKVAD-EHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK  310 (573)
T ss_dssp             CCCCCBHHHHHTC-TTSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT
T ss_pred             ecCCCcHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccCC
Confidence            9999999999975 345799999999999999999999999   99999999999999854  78999999999764   


Q ss_pred             -------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          169 -------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       169 -------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +|+.|+|||++.+..|+.++||||+||++|||++|..||....   ... +.    ..+....   .--+...
T Consensus       311 ~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~---~~~-~~----~~i~~~~---~~~~~~~  379 (573)
T 3uto_A          311 QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEN---DDE-TL----RNVKSCD---WNMDDSA  379 (573)
T ss_dssp             SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS---HHH-HH----HHHHTTC---CCCCSGG
T ss_pred             CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC---HHH-HH----HHHHhCC---CCCCccc
Confidence                   3788999999999999999999999999999999999996431   111 11    0111110   0001112


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....+.++.+||.+||+.||++|||+.|+++
T Consensus       380 ~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          380 FSGISEDGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            2345678899999999999999999999986

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=5.7e-46  Score=321.80  Aligned_cols=257  Identities=23%  Similarity=0.342  Sum_probs=207.0

Q ss_pred             hhhhhHHHHhhhccccccCCCCCCCCcchhHHHH-----HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEe
Q 048314           12 IARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR   84 (274)
Q Consensus        12 ~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~   84 (274)
                      ++..++...+++|.....+|.|+|  |.||+|..     .++|.....  ...+.+.+|+.++++++||||+++++++.+
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~  106 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVF--GKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE  106 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSS--SEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCC
T ss_pred             ecHHHHHHHHhccCccceeecCCC--eeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC
Confidence            456667778899999999999999  99999832     112222111  223457799999999999999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAE--RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~--~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                      .+..++||||+++|+|.+++.....  ..+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.+||+||
T Consensus       107 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Df  183 (321)
T 2qkw_B          107 RNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDF  183 (321)
T ss_dssp             TTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCC
T ss_pred             CCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeec
Confidence            9999999999999999999976432  3599999999999999999999999   9999999999999999999999999


Q ss_pred             ccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh
Q 048314          163 GLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN  229 (274)
Q Consensus       163 g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                      |++....             ++.|+|||.+....++.++||||||+++|+|++|+.||..... ........|.......
T Consensus       184 g~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~-~~~~~~~~~~~~~~~~  262 (321)
T 2qkw_B          184 GISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLP-REMVNLAEWAVESHNN  262 (321)
T ss_dssp             TTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSS-SSCCCHHHHTHHHHTT
T ss_pred             ccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCc-HHHHHHHHHhhhcccc
Confidence            9986432             5679999999888899999999999999999999999975422 2222233333333333


Q ss_pred             hhhhhhhcCC---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          230 RELNKLVRGT---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       230 ~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ......+++.   ..+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  310 (321)
T 2qkw_B          263 GQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL  310 (321)
T ss_dssp             TCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            3334444433   45678889999999999999999999999999864

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=4.8e-44  Score=315.97  Aligned_cols=235  Identities=18%  Similarity=0.195  Sum_probs=190.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-------------HHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-------------ALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAM   83 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-------------~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~   83 (274)
                      .++|...+.||+|+|  |.||++..             .++|.....   ...+.+.+|+.+++++ +||||++++++|.
T Consensus        80 ~~~~~~~~~LG~G~f--g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~  157 (370)
T 2psq_A           80 RDKLTLGKPLGEGCF--GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT  157 (370)
T ss_dssp             GGGEEEEEEESCCSS--SEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC
T ss_pred             HHHCEeeeEEeeCCC--eeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc
Confidence            356777888999999  99998831             222322221   1234577999999999 8999999999999


Q ss_pred             eCCcceEEEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 048314           84 RGSKPSTEAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  149 (274)
Q Consensus        84 ~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  149 (274)
                      +.+..++||||+++|+|.+++....              ...+++..++.++.|++.||.|||+.   +++||||||+||
T Consensus       158 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NI  234 (370)
T 2psq_A          158 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNV  234 (370)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGE
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhE
Confidence            9999999999999999999998643              23589999999999999999999999   999999999999


Q ss_pred             EEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChh
Q 048314          150 LMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPE  215 (274)
Q Consensus       150 l~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~  215 (274)
                      +++.++.+||+|||+++...             ++.|+|||.+....++.++||||||+++|||++ |..||.....  .
T Consensus       235 ll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~--~  312 (370)
T 2psq_A          235 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV--E  312 (370)
T ss_dssp             EECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG--G
T ss_pred             EECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH--H
Confidence            99999999999999987543             346999999998899999999999999999999 9999964311  1


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          216 EIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .  +.    .....+      .....+..++..+.+++.+||+.||++|||+.|+++.|
T Consensus       313 ~--~~----~~~~~~------~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L  359 (370)
T 2psq_A          313 E--LF----KLLKEG------HRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  359 (370)
T ss_dssp             G--HH----HHHHTT------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             H--HH----HHHhcC------CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            1  00    011111      01134556678899999999999999999999999864

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.6e-44  Score=309.83  Aligned_cols=234  Identities=21%  Similarity=0.282  Sum_probs=190.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcC--CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS--PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .++|.....+|.|+|  |.||++..      .++|....  ....+.+.+|+.++++++||||+++++++.+++..++||
T Consensus         9 ~~~~~~~~~lG~G~~--g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   86 (310)
T 3s95_A            9 PSDLIHGEVLGKGCF--GQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFIT   86 (310)
T ss_dssp             GGGEEEEEEEECCSS--EEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhHeeccceecCCCC--EEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEE
Confidence            467788899999999  99999821      11222211  123455789999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      ||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||++...    
T Consensus        87 e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  162 (310)
T 3s95_A           87 EYIKGGTLRGIIKS-MDSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEK  162 (310)
T ss_dssp             ECCTTCBHHHHHHH-CCTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC---
T ss_pred             EecCCCcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceeccccc
Confidence            99999999999987 456799999999999999999999999   9999999999999999999999999998643    


Q ss_pred             ---------------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhH--HHHHHHHH
Q 048314          169 ---------------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI--ILTNWVYK  225 (274)
Q Consensus       169 ---------------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~--~~~~~~~~  225 (274)
                                           +++.|+|||.+....++.++||||||+++|+|++|..|+..........  .....   
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~---  239 (310)
T 3s95_A          163 TQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGF---  239 (310)
T ss_dssp             -----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHH---
T ss_pred             ccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhcc---
Confidence                                 4566999999999899999999999999999999999986432211110  00000   


Q ss_pred             HHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          226 CFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                            ...     ..+..++..+.+++.+||+.||++|||+.++++.|
T Consensus       240 ------~~~-----~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L  277 (310)
T 3s95_A          240 ------LDR-----YCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWL  277 (310)
T ss_dssp             ------HHH-----TCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ------ccc-----cCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence                  000     12334556789999999999999999999998764

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=8.1e-44  Score=322.17  Aligned_cols=236  Identities=18%  Similarity=0.176  Sum_probs=194.6

Q ss_pred             HhhhccccccCCCCCCCCcchhHH----HHHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC-cceEEEEe
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSC----MRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS-KPSTEAAL   94 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~----~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~e~   94 (274)
                      ..++|...+.||.|+|  |.||+|    ...++|........+.|.+|+.+|++++||||+++++++.+.. ..++||||
T Consensus       191 ~~~~~~~~~~lG~G~f--g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~  268 (450)
T 1k9a_A          191 NMKELKLLQTIGKGEF--GDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY  268 (450)
T ss_dssp             CGGGEEEEEEEEECSS--EEEEEEEETTEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred             ChHHeEEEeeecCcCC--eeEEEEEecCCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence            3467777889999999  999998    2222333444446677899999999999999999999987765 78999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      +++|+|.+++.......+++..++.++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++...     
T Consensus       269 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~  345 (450)
T 1k9a_A          269 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT  345 (450)
T ss_dssp             CTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCcccccccccC
Confidence            9999999999875445589999999999999999999999   99999999999999999999999999987543     


Q ss_pred             ---CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHH
Q 048314          170 ---DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKN  245 (274)
Q Consensus       170 ---~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (274)
                         +..|+|||.+....++.++||||||+++|||++ |..||........    .    .....+     . ....+..+
T Consensus       346 ~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~----~----~~i~~~-----~-~~~~p~~~  411 (450)
T 1k9a_A          346 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV----V----PRVEKG-----Y-KMDAPDGC  411 (450)
T ss_dssp             -CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTH----H----HHHHTT-----C-CCCCCTTC
T ss_pred             CCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH----H----HHHHcC-----C-CCCCCCcC
Confidence               467999999999899999999999999999998 9999964421110    0    011111     0 11355667


Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          246 LENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       246 ~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +..+.++|.+||+.||++|||+.++++.|
T Consensus       412 ~~~l~~li~~cl~~dp~~Rpt~~~l~~~L  440 (450)
T 1k9a_A          412 PPAVYDVMKNCWHLDAATRPTFLQLREQL  440 (450)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            78999999999999999999999998764

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=3.9e-44  Score=327.83  Aligned_cols=236  Identities=16%  Similarity=0.175  Sum_probs=193.9

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ...+|.....||.|+|  |.||+|..      .++|... .....+.|.+|+.+|++++||||++++++|.+.+..++||
T Consensus       218 ~~~~~~~~~~lG~G~f--g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~  295 (495)
T 1opk_A          218 ERTDITMKHKLGGGQY--GEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT  295 (495)
T ss_dssp             CGGGEEEEEESGGGTT--SSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             CHHHceeeeEecCCCC--eEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEE
Confidence            4566777889999999  99999821      1222222 2234567889999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++|+|.+++.......+++..++.++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++...   
T Consensus       296 E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  372 (495)
T 1opk_A          296 EFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT  372 (495)
T ss_dssp             ECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC
T ss_pred             EccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCCc
Confidence            999999999999876566799999999999999999999999   99999999999999999999999999987643   


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               +..|+|||.+....++.++||||||+++|||++ |..||......  .  +.    .....     .. ..
T Consensus       373 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~--~--~~----~~~~~-----~~-~~  438 (495)
T 1opk_A          373 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--Q--VY----ELLEK-----DY-RM  438 (495)
T ss_dssp             EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--G--HH----HHHHT-----TC-CC
T ss_pred             eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH--H--HH----HHHHc-----CC-CC
Confidence                     246999999998889999999999999999999 89998643111  1  00    10111     00 11


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+..++..+.+++.+||+.||++|||+.+|++.|
T Consensus       439 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L  473 (495)
T 1opk_A          439 ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAF  473 (495)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHH
Confidence            34556778899999999999999999999998764

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.2e-43  Score=304.22  Aligned_cols=233  Identities=16%  Similarity=0.139  Sum_probs=189.4

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHh--cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATV--NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ..++|.....+|.|+|  |.||++..      .++|..  ......+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus        18 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   95 (297)
T 3fxz_A           18 PKKKYTRFEKIGQGAS--GTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV   95 (297)
T ss_dssp             GGGTBCCCEEEEEETT--EEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhhceeeeeeeccCCC--eEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEE
Confidence            3567888999999999  99999821      112221  1223345577999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |||+.+|+|.+++..   ..+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...   
T Consensus        96 ~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  169 (297)
T 3fxz_A           96 MEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (297)
T ss_dssp             EECCTTCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             EECCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCc
Confidence            999999999999986   3699999999999999999999999   9999999999999999999999999987643   


Q ss_pred             --------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          169 --------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       169 --------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                              +++.|+|||.+....++.++||||||+++|+|++|..||....   ......    .....     ......
T Consensus       170 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~---~~~~~~----~~~~~-----~~~~~~  237 (297)
T 3fxz_A          170 QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN---PLRALY----LIATN-----GTPELQ  237 (297)
T ss_dssp             TCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSC---HHHHHH----HHHHH-----CSCCCS
T ss_pred             ccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC---HHHHHH----HHHhC-----CCCCCC
Confidence                    3667999999999899999999999999999999999996431   111000    00000     001112


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+...+..+.+++.+||+.||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          238 NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            34456678999999999999999999999986

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.8e-44  Score=312.08  Aligned_cols=233  Identities=19%  Similarity=0.206  Sum_probs=189.7

Q ss_pred             hhccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      ++|...+.+|.|+|  |.||+|..         .++|.....   ...+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        49 ~~y~i~~~lG~G~~--g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  126 (325)
T 3kul_A           49 SRIHIEKIIGSGDS--GEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAM  126 (325)
T ss_dssp             GGEEEEEEEEETTT--EEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCE
T ss_pred             hHeEEeeEEEeCCC--cEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccE
Confidence            45666789999999  99998832         223332221   12345789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++....
T Consensus       127 lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  202 (325)
T 3kul_A          127 IVTEYMENGSLDTFLRT-HDGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLE  202 (325)
T ss_dssp             EEEECCTTCBHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred             EEeeCCCCCcHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCcccccc
Confidence            99999999999999976 446799999999999999999999999   99999999999999999999999999997643


Q ss_pred             --------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          170 --------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       170 --------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                                    +..|+|||.+....++.++||||||+++|+|++ |..||....   .. .+..    .....    
T Consensus       203 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~---~~-~~~~----~~~~~----  270 (325)
T 3kul_A          203 DDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMT---NR-DVIS----SVEEG----  270 (325)
T ss_dssp             ----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSC---HH-HHHH----HHHTT----
T ss_pred             cCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCC---HH-HHHH----HHHcC----
Confidence                          235999999988889999999999999999998 999996431   11 1100    00000    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .....+...+..+.+++.+||+.||++|||+.||++.|
T Consensus       271 --~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L  308 (325)
T 3kul_A          271 --YRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVL  308 (325)
T ss_dssp             --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --CCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence              11134556678899999999999999999999999865

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=4e-43  Score=301.72  Aligned_cols=258  Identities=23%  Similarity=0.308  Sum_probs=204.4

Q ss_pred             chhhhhhhHHHHhhhcccc------ccCCCCCCCCcchhHHHH----HHHHHhcCC------CCCCcHHHHHHHHhcCCC
Q 048314            9 SAWIARSSLCTKLRNFCRS------SLNDRNSPRSKSVWSCMR----ALMATVNSP------YSPSRPLTLTSIVSRVSW   72 (274)
Q Consensus         9 ~~~~~~~~l~~~~~~f~~~------~~~g~g~~~~g~vy~~~~----~~~~~~~~~------~~~~~~~~e~~~l~~l~h   72 (274)
                      ...|++.++...+++|...      ..+|.|+|  |.||+|..    .++|.....      ...+.+.+|+.++++++|
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~--g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   89 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGF--GVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH   89 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSS--EEEEEEESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCC--eEEEEEEECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence            4568999999999999987      88999999  99999821    112222111      113456799999999999


Q ss_pred             CccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 048314           73 TTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSA-ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM  151 (274)
Q Consensus        73 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~  151 (274)
                      |||+++++++.+.+..++||||+++|+|.+++.... ...+++..++.++.|++.||.|||+.   +++|+||||+||++
T Consensus        90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili  166 (307)
T 2nru_A           90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILL  166 (307)
T ss_dssp             TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEE
T ss_pred             CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEE
Confidence            999999999999999999999999999999997532 34699999999999999999999999   99999999999999


Q ss_pred             cCCCcEEEeccccceec-------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHH
Q 048314          152 DEFWTAKISDFGLAKLL-------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII  218 (274)
Q Consensus       152 ~~~~~~kl~d~g~~~~~-------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~  218 (274)
                      +.++.++|+|||++...             +++.|+|||.+.+ .++.++||||||+++|+|++|..||...........
T Consensus       167 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~  245 (307)
T 2nru_A          167 DEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLD  245 (307)
T ss_dssp             CTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTH
T ss_pred             cCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHH
Confidence            99999999999987643             2567999998764 578899999999999999999999975433221111


Q ss_pred             HHHHHHHHHhhhhhhhhhcCC--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          219 LTNWVYKCFINRELNKLVRGT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ......  .....+...+++.  ..+...+..+.+++.+||+.||.+|||+.+|++.|
T Consensus       246 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L  301 (307)
T 2nru_A          246 IKEEIE--DEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL  301 (307)
T ss_dssp             HHHHHH--TTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             HHHHhh--hhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            111100  0111122333332  35677888999999999999999999999999865

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=2e-44  Score=319.12  Aligned_cols=235  Identities=18%  Similarity=0.174  Sum_probs=190.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ..++|...+.+|.|+|  |.||+|..      .++|.....   ...+.+.+|+++|++++||||+++++++.+.+..++
T Consensus       112 ~~~~~~~~~~lG~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l  189 (377)
T 3cbl_A          112 NHEDLVLGEQIGRGNF--GEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYI  189 (377)
T ss_dssp             CGGGEEEEEEEEEETT--EEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             chHHeEEeeEeccCCC--CeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEE
Confidence            3456777889999999  99999822      122222221   123568899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++... 
T Consensus       190 v~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~  265 (377)
T 3cbl_A          190 VMELVQGGDFLTFLRT-EGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEAD  265 (377)
T ss_dssp             EEECCTTCBHHHHHHH-HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTT
T ss_pred             EEEcCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCC
Confidence            9999999999999986 334699999999999999999999999   99999999999999999999999999987532 


Q ss_pred             ------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          170 ------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       170 ------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                                  +..|+|||.+....++.++||||||+++|||++ |..||....   . ....    .....+      
T Consensus       266 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~---~-~~~~----~~~~~~------  331 (377)
T 3cbl_A          266 GVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS---N-QQTR----EFVEKG------  331 (377)
T ss_dssp             SEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC---H-HHHH----HHHHTT------
T ss_pred             CceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC---H-HHHH----HHHHcC------
Confidence                        235999999988889999999999999999998 999986431   1 0011    111111      


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+.+..++..+.+++.+||+.||++|||+.+|++.|
T Consensus       332 ~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L  369 (377)
T 3cbl_A          332 GRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQEL  369 (377)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence            01134555678899999999999999999999998864

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=6.3e-44  Score=315.53  Aligned_cols=233  Identities=21%  Similarity=0.211  Sum_probs=183.1

Q ss_pred             hhccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      ++|...+.||.|+|  |.||+|..         .++|.....   ...+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        45 ~~~~~~~~lG~G~f--g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  122 (373)
T 2qol_A           45 TNISIDKVVGAGEF--GEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVM  122 (373)
T ss_dssp             GGCCCCEEEEECSS--SEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred             hhceeeeEEeeCCC--eEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceE
Confidence            57788899999999  99998832         122222221   12345789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++...
T Consensus       123 lv~e~~~~~sL~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  198 (373)
T 2qol_A          123 IVTEYMENGSLDSFLRK-HDAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLE  198 (373)
T ss_dssp             EEEECCTTCBHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred             EEEeCCCCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCccccccc
Confidence            99999999999999986 445799999999999999999999999   99999999999999999999999999987543


Q ss_pred             --------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          170 --------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       170 --------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                                    +..|+|||.+....++.++||||||+++|||++ |..||....   .. .+.    .....+    
T Consensus       199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~---~~-~~~----~~i~~~----  266 (373)
T 2qol_A          199 DDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMS---NQ-DVI----KAVDEG----  266 (373)
T ss_dssp             ---------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCC---HH-HHH----HHHHTT----
T ss_pred             cCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCC---HH-HHH----HHHHcC----
Confidence                          246999999998899999999999999999997 999996431   11 111    001110    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       .. ...+..++..+.+++.+||+.||++|||+.+|++.|
T Consensus       267 -~~-~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L  304 (373)
T 2qol_A          267 -YR-LPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL  304 (373)
T ss_dssp             -EE-CCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -CC-CCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHH
Confidence             01 123445678899999999999999999999998864

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=6.4e-44  Score=310.25  Aligned_cols=233  Identities=12%  Similarity=0.122  Sum_probs=189.4

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ....++|...+.+|+|+|  |.||++.      ..++|.+...    ...+++.+|+++|++++||||+++++++.+.+.
T Consensus        11 ~~~~~~y~~~~~lG~G~~--g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~   88 (328)
T 3fe3_A           11 QPHIGNYRLLKTIGKGNF--AKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKT   88 (328)
T ss_dssp             CCEETTEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             CCccCCEEEEEEEeeCCC--EEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCE
Confidence            344578888999999999  9999882      1222222111    223456799999999999999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++..
T Consensus        89 ~~lv~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  163 (328)
T 3fe3_A           89 LYLIMEYASGGEVFDYLVA--HGRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNE  163 (328)
T ss_dssp             EEEEECCCTTCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGG
T ss_pred             EEEEEECCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCcee
Confidence            9999999999999999976  35699999999999999999999999   999999999999999999999999999864


Q ss_pred             c----------CCCCcCCCcccccCCCc-cccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          168 L----------SDKGCMAPECYKRTPIS-VKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       168 ~----------~~~~~~ape~~~~~~~~-~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      .          +++.|+|||.+.+..+. .++||||+||++|+|++|..||....   . ..+..    ....+      
T Consensus       164 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~---~-~~~~~----~i~~~------  229 (328)
T 3fe3_A          164 FTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQN---L-KELRE----RVLRG------  229 (328)
T ss_dssp             GSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSS---H-HHHHH----HHHHC------
T ss_pred             cCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCC---H-HHHHH----HHHhC------
Confidence            3          36779999999887764 79999999999999999999996431   1 11110    01111      


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       ....|...+..+.+++.+||+.||.+|||+.|+++
T Consensus       230 -~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~  264 (328)
T 3fe3_A          230 -KYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMK  264 (328)
T ss_dssp             -CCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred             -CCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence             11244456678999999999999999999999986

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=9.2e-44  Score=300.28  Aligned_cols=234  Identities=15%  Similarity=0.187  Sum_probs=190.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----HHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      .++|...+.+|.|+|  |.||++..     .++|... .....+++.+|+.++++++||||+++++++.+.+..++||||
T Consensus         9 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   86 (269)
T 4hcu_A            9 PSELTFVQEIGSGQF--GLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF   86 (269)
T ss_dssp             GGGEEEEEEEEECSS--CEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             hhhceeeheecCCCc--cEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEe
Confidence            356777889999999  99999822     1222222 223445688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      +++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++....     
T Consensus        87 ~~~~~L~~~l~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  162 (269)
T 4hcu_A           87 MEHGCLSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT  162 (269)
T ss_dssp             CTTCBHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHH
T ss_pred             CCCCcHHHHHHh-cCcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccccccccc
Confidence            999999999976 445699999999999999999999999   99999999999999999999999999987543     


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +..|+|||.+....++.++|+||+|+++|+|++ |..||....   ... ...    .....     . ....
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~---~~~-~~~----~~~~~-----~-~~~~  228 (269)
T 4hcu_A          163 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS---NSE-VVE----DISTG-----F-RLYK  228 (269)
T ss_dssp             STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC---HHH-HHH----HHHTT-----C-CCCC
T ss_pred             cccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCC---HHH-HHH----HHhcC-----c-cCCC
Confidence                   345999999988889999999999999999999 899986431   111 100    00000     0 1123


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       229 ~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l  261 (269)
T 4hcu_A          229 PRLASTHVYQIMNHCWRERPEDRPAFSRLLRQL  261 (269)
T ss_dssp             CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHccCCcccCcCHHHHHHHH
Confidence            444567899999999999999999999999865

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.1e-43  Score=306.23  Aligned_cols=244  Identities=21%  Similarity=0.256  Sum_probs=189.7

Q ss_pred             hhhhHHHHhhhccccccCCCCCCCCcchhHHH----HHHHHHhcCCC----CCCcHHHHHHHHhcCCCCccceEeEEEEe
Q 048314           13 ARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCM----RALMATVNSPY----SPSRPLTLTSIVSRVSWTTDIEVSSVAMR   84 (274)
Q Consensus        13 ~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~----~~~~~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~~~~~~   84 (274)
                      ...++....++|.....+|.|+|  |.||++.    ..++|......    ..+.+.+|+.++++++||||+++++++.+
T Consensus        28 ~~~~~~i~~~~y~i~~~lG~G~~--g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~  105 (309)
T 3p86_A           28 DGDDMDIPWCDLNIKEKIGAGSF--GTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQ  105 (309)
T ss_dssp             ----CBCCGGGEEEEEEEEECSS--EEEEEEEETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CcccccCChhHceeeeEeecCCC--eEEEEEEECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE
Confidence            34444555678888999999999  9999982    11222222221    12357799999999999999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCC--cccCCCCCCceEEcCCCcEEEec
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAE-RNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDEFWTAKISD  161 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~~~~~~kl~d  161 (274)
                      .+..++||||+++|+|.+++..... ..+++..++.++.|++.||.|||+.   +  ++||||||+||+++.++.+||+|
T Consensus       106 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~D  182 (309)
T 3p86_A          106 PPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCD  182 (309)
T ss_dssp             TTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECC
T ss_pred             CCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECC
Confidence            9999999999999999999986321 2399999999999999999999999   8  99999999999999999999999


Q ss_pred             cccceec-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh
Q 048314          162 FGLAKLL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR  230 (274)
Q Consensus       162 ~g~~~~~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      ||++...           +++.|+|||.+....++.++||||||+++|+|++|..||....   .. .....        
T Consensus       183 fg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~---~~-~~~~~--------  250 (309)
T 3p86_A          183 FGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLN---PA-QVVAA--------  250 (309)
T ss_dssp             CC-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSC---HH-HHHHH--------
T ss_pred             CCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC---HH-HHHHH--------
Confidence            9998542           3678999999999889999999999999999999999996431   11 00000        


Q ss_pred             hhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          231 ELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       ..........+...+..+.+++.+||+.||++|||+.++++.|
T Consensus       251 -~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L  293 (309)
T 3p86_A          251 -VGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLL  293 (309)
T ss_dssp             -HHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -HHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence             0001111235556678899999999999999999999998864

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=5.1e-44  Score=323.84  Aligned_cols=238  Identities=16%  Similarity=0.238  Sum_probs=191.7

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHHH-----HHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      .....++|...+.||.|+|  |.||+|..     .++|... .....+.|.+|+.+|++++||||+++++++. .+..++
T Consensus       183 ~~i~~~~~~~~~~lG~G~f--g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~l  259 (454)
T 1qcf_A          183 WEIPRESLKLEKKLGAGQF--GEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYI  259 (454)
T ss_dssp             SBCCGGGEEEEEEEECCSS--EEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             eeechHHeEEEEEcccCCc--eEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEE
Confidence            3344567777889999999  99999821     1222222 2234567889999999999999999999986 567899


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ||||+++|+|.+++.......+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++... 
T Consensus       260 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~  336 (454)
T 1qcf_A          260 ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIED  336 (454)
T ss_dssp             EECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCC
T ss_pred             EEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCC
Confidence            99999999999999864334689999999999999999999999   99999999999999999999999999997543 


Q ss_pred             -----------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          170 -----------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       170 -----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                                 +..|+|||.+....++.++||||||+++|||++ |..||....   . ..+..    ....+     . 
T Consensus       337 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~---~-~~~~~----~i~~~-----~-  402 (454)
T 1qcf_A          337 NEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS---N-PEVIR----ALERG-----Y-  402 (454)
T ss_dssp             HHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC---H-HHHHH----HHHHT-----C-
T ss_pred             CceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCC---H-HHHHH----HHHcC-----C-
Confidence                       346999999998899999999999999999999 999996431   1 11111    11111     0 


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+.+..++..+.+++.+||+.||++|||+.+|++.|
T Consensus       403 ~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L  439 (454)
T 1qcf_A          403 RMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVL  439 (454)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHH
Confidence            1124556678899999999999999999999998764

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=8.2e-43  Score=302.34  Aligned_cols=243  Identities=16%  Similarity=0.123  Sum_probs=194.1

Q ss_pred             hhhhhhhHHHHhhh----------ccccccCCCCCCCCcchhHHH------HHHHHHhcCC--CCCCcHHHHHHHHhcCC
Q 048314           10 AWIARSSLCTKLRN----------FCRSSLNDRNSPRSKSVWSCM------RALMATVNSP--YSPSRPLTLTSIVSRVS   71 (274)
Q Consensus        10 ~~~~~~~l~~~~~~----------f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~--~~~~~~~~e~~~l~~l~   71 (274)
                      ..++..++..+++.          |.....+|+|+|  |.||++.      ..++|.....  ...+.+.+|+.++++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~--g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~  100 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGST--GIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQ  100 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCC
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCC--eEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCC
Confidence            34678888887764          566678999999  9999882      1223322222  23345779999999999


Q ss_pred             CCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 048314           72 WTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM  151 (274)
Q Consensus        72 h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~  151 (274)
                      ||||+++++++...+..++||||+++++|.+++..   ..+++..+..++.|++.||.|||+.   +++||||||+||++
T Consensus       101 h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll  174 (321)
T 2c30_A          101 HFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILL  174 (321)
T ss_dssp             CTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEE
T ss_pred             CCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEE
Confidence            99999999999999999999999999999999864   4699999999999999999999999   99999999999999


Q ss_pred             cCCCcEEEeccccceec-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHH
Q 048314          152 DEFWTAKISDFGLAKLL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT  220 (274)
Q Consensus       152 ~~~~~~kl~d~g~~~~~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~  220 (274)
                      +.++.+||+|||++...           +++.|+|||.+....++.++||||||+++|+|++|..||....   .. ...
T Consensus       175 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~---~~-~~~  250 (321)
T 2c30_A          175 TLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDS---PV-QAM  250 (321)
T ss_dssp             CTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC---HH-HHH
T ss_pred             CCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC---HH-HHH
Confidence            99999999999987653           2567999999998889999999999999999999999996431   11 111


Q ss_pred             HHHHHHHhhhhhhhhhcCC-ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          221 NWVYKCFINRELNKLVRGT-EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .    .....     ..+. ..+...+..+.+++.+||+.||++|||+.|+++.
T Consensus       251 ~----~~~~~-----~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  295 (321)
T 2c30_A          251 K----RLRDS-----PPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDH  295 (321)
T ss_dssp             H----HHHHS-----SCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             H----HHhcC-----CCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0    01111     1111 1223445779999999999999999999999863

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=2e-42  Score=301.83  Aligned_cols=230  Identities=17%  Similarity=0.162  Sum_probs=189.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-------HHHH----HHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-------RALM----ATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~----~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.+|+|+|  |.||++.       +++|    .........+.+.+|+.++++++||||+++++++.+.+..+
T Consensus         4 ~~~y~~~~~lG~G~f--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~   81 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTF--GKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             GGGEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             hHHeEEEEEEecCCC--eEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEE
Confidence            468888999999999  9999871       1111    11112234556789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      +||||+++|+|.+++..  .+.+++..++.++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++.. 
T Consensus        82 lv~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~  156 (337)
T 1o6l_A           82 FVMEYANGGELFFHLSR--ERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGI  156 (337)
T ss_dssp             EEEECCTTCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred             EEEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhcc
Confidence            99999999999999985  45799999999999999999999999   9999999999999999999999999998642 


Q ss_pred             ----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          169 ----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       169 ----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                +++.|+|||++....++.++|+||||+++|||++|..||....   .. .+..    ....       ..
T Consensus       157 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~---~~-~~~~----~i~~-------~~  221 (337)
T 1o6l_A          157 SDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD---HE-RLFE----LILM-------EE  221 (337)
T ss_dssp             CTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS---HH-HHHH----HHHH-------CC
T ss_pred             cCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCC---HH-HHHH----HHHc-------CC
Confidence                      2677999999998899999999999999999999999996431   11 1110    0111       11


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      ...|...+..+.+++.+||+.||++||     ++.|+++
T Consensus       222 ~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~  260 (337)
T 1o6l_A          222 IRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence            134555678899999999999999999     8999875

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=1.6e-43  Score=298.49  Aligned_cols=235  Identities=15%  Similarity=0.183  Sum_probs=190.3

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH-----HHHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM-----RALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~-----~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ..++|...+.+|.|+|  |.||++.     ..++|... .....+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus         6 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   83 (268)
T 3sxs_A            6 KREEITLLKELGSGQF--GVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTE   83 (268)
T ss_dssp             CGGGEEEEEEEEEETT--EEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             chhheeeeeeeccCCC--ceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEE
Confidence            3467888899999999  9999882     11222222 22344567899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+....    
T Consensus        84 ~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  159 (268)
T 3sxs_A           84 YISNGCLLNYLRS-HGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY  159 (268)
T ss_dssp             CCTTCBHHHHHHH-HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE
T ss_pred             ccCCCcHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhhh
Confidence            9999999999986 344699999999999999999999999   99999999999999999999999999987543    


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                              +..|+|||.+....++.++||||||+++|+|++ |..||....   ......    . ....      ....
T Consensus       160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~---~~~~~~----~-~~~~------~~~~  225 (268)
T 3sxs_A          160 VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYT---NSEVVL----K-VSQG------HRLY  225 (268)
T ss_dssp             EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSC---HHHHHH----H-HHTT------CCCC
T ss_pred             hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccC---hHHHHH----H-HHcC------CCCC
Confidence                    235999999988889999999999999999998 999996431   110000    0 0000      0112


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       226 ~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L  259 (268)
T 3sxs_A          226 RPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSI  259 (268)
T ss_dssp             CCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             CCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            3344567899999999999999999999999864

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.7e-43  Score=305.40  Aligned_cols=235  Identities=17%  Similarity=0.144  Sum_probs=186.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .++|.....+|.|+|  |.||++..      .++|.+... ...+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus         4 ~~~y~~~~~lG~G~~--g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   81 (321)
T 1tki_A            4 YEKYMIAEDLGRGEF--GIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             TTTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hhceEeeeEEecCCC--eEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEE
Confidence            467788899999999  99999821      112222211 223446799999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC--CCcEEEeccccceec---
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE--FWTAKISDFGLAKLL---  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~--~~~~kl~d~g~~~~~---  168 (274)
                      ||++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.  ++.+||+|||++...   
T Consensus        82 ~~~g~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~  157 (321)
T 1tki_A           82 FISGLDIFERINT-SAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG  157 (321)
T ss_dssp             CCCCCBHHHHHTS-SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT
T ss_pred             eCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC
Confidence            9999999999975 345799999999999999999999999   9999999999999987  789999999998764   


Q ss_pred             -------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          169 -------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       169 -------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +++.|+|||.+....++.++||||||+++|+|++|..||...   .....+..     ..+....   .+...
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~---~~~~~~~~-----i~~~~~~---~~~~~  226 (321)
T 1tki_A          158 DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE---TNQQIIEN-----IMNAEYT---FDEEA  226 (321)
T ss_dssp             CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS---SHHHHHHH-----HHHTCCC---CCHHH
T ss_pred             CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC---CHHHHHHH-----HHcCCCC---CChhh
Confidence                   367899999998888899999999999999999999999643   11111110     1111000   00001


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....+.++.+++.+||+.||++|||+.|+++
T Consensus       227 ~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~  257 (321)
T 1tki_A          227 FKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             hccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            1134578899999999999999999999986

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=1.8e-43  Score=300.51  Aligned_cols=237  Identities=14%  Similarity=0.146  Sum_probs=189.1

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHH-----HHHHHHhcC-CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCM-----RALMATVNS-PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~-----~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ....++|...+.+|.|+|  |.||++.     ..++|.... ....+++.+|++++++++||||+++++++.+.+..++|
T Consensus        20 ~~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   97 (283)
T 3gen_A           20 EIDPKDLTFLKELGTGQF--GVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFII   97 (283)
T ss_dssp             BCCGGGEEEEEECC---C--EEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEE
T ss_pred             cCCHHHHHhHhhcCCCCC--ceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEE
Confidence            344567888899999999  9999882     112222222 23446688999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |||+++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+....  
T Consensus        98 ~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  173 (283)
T 3gen_A           98 TEYMANGCLLNYLRE-MRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD  173 (283)
T ss_dssp             ECCCTTCBHHHHHHC-GGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCH
T ss_pred             EeccCCCcHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEcccccccccccc
Confidence            999999999999976 345699999999999999999999999   99999999999999999999999999987543  


Q ss_pred             ----------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          170 ----------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       170 ----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                ++.|+|||.+....++.++|+||||+++|+|++ |..||.....   . ....    .     +.... .
T Consensus       174 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~---~-~~~~----~-----~~~~~-~  239 (283)
T 3gen_A          174 EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN---S-ETAE----H-----IAQGL-R  239 (283)
T ss_dssp             HHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCH---H-HHHH----H-----HHTTC-C
T ss_pred             ccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccCh---h-HHHH----H-----Hhccc-C
Confidence                      346999999998889999999999999999998 9999964311   1 0000    0     00100 1


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       240 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L  275 (283)
T 3gen_A          240 LYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNI  275 (283)
T ss_dssp             CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHH
Confidence            123344567899999999999999999999999864

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=2.3e-43  Score=306.48  Aligned_cols=233  Identities=17%  Similarity=0.200  Sum_probs=188.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH----------HHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR----------ALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      .++|...+.+|.|+|  |.||+|..          .++|...   .....+.+.+|+.++++++||||++++++|.+.. 
T Consensus        14 ~~~y~~~~~lG~G~~--g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-   90 (327)
T 3poz_A           14 ETEFKKIKVLGSGAF--GTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-   90 (327)
T ss_dssp             GGGEEEEEEEEEETT--EEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-
T ss_pred             HHHcccceEEeeCCC--eEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-
Confidence            467888999999999  99999831          1122211   1123456789999999999999999999998755 


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++++||+.+|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++.
T Consensus        91 ~~~v~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~  166 (327)
T 3poz_A           91 VQLITQLMPFGCLLDYVRE-HKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             EEEEEECCTTCBHHHHHHH-STTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHH
T ss_pred             eEEEEEecCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeE
Confidence            7899999999999999987 456799999999999999999999999   999999999999999999999999999864


Q ss_pred             cC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          168 LS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       168 ~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ..             +..|+|||.+....++.++||||||+++|||++ |..||.......    +.    ......   
T Consensus       167 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~----~~----~~~~~~---  235 (327)
T 3poz_A          167 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE----IS----SILEKG---  235 (327)
T ss_dssp             HTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG----HH----HHHHTT---
T ss_pred             ccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHH----HH----HHHHcC---
Confidence            32             347999999999999999999999999999999 999996431111    00    000110   


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                         .....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       236 ---~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l  273 (327)
T 3poz_A          236 ---ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEF  273 (327)
T ss_dssp             ---CCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHH
T ss_pred             ---CCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence               01124455677899999999999999999999998764

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=4.2e-42  Score=298.70  Aligned_cols=239  Identities=12%  Similarity=0.003  Sum_probs=190.5

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .++|...+.||.|+|  |.||+|.      ..++|........+.+.+|+.+++++ +||||+++++++.+.+..++|||
T Consensus         8 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e   85 (330)
T 2izr_A            8 GPNFRVGKKIGCGNF--GELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE   85 (330)
T ss_dssp             TTTEEEEEECCC-CT--TSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred             cCCeEEEEEeeccCC--ceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence            367888999999999  9999983      12233444445567799999999999 89999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc-----EEEeccccceec
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-----AKISDFGLAKLL  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~-----~kl~d~g~~~~~  168 (274)
                      |+ +++|.+++... ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.     +||+|||++...
T Consensus        86 ~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~  160 (330)
T 2izr_A           86 LL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEY  160 (330)
T ss_dssp             CC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEES
T ss_pred             eC-CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccceee
Confidence            99 89999999863 56799999999999999999999999   9999999999999998887     999999998743


Q ss_pred             ------------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh
Q 048314          169 ------------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR  230 (274)
Q Consensus       169 ------------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                                        +++.|+|||.+....++.++||||||+++|||++|..||.................. ....
T Consensus       161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~-~~~~  239 (330)
T 2izr_A          161 IDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDT-KRAT  239 (330)
T ss_dssp             BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHH-HHHS
T ss_pred             ecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhh-hccC
Confidence                              256799999999989999999999999999999999999754222211111111000 0000


Q ss_pred             hhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          231 ELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ....      .....+ .+.+++..||+.||.+|||+++|.+.|
T Consensus       240 ~~~~------~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l  276 (330)
T 2izr_A          240 PIEV------LCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLF  276 (330)
T ss_dssp             CHHH------HTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHH
T ss_pred             CHHH------HhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence            0000      011123 899999999999999999999998754

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-43  Score=311.86  Aligned_cols=235  Identities=18%  Similarity=0.212  Sum_probs=187.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      .++|...+.||.|+|  |.||+|.           ..++|.+...   .....+.+|+.++++++||||+++++++.+.+
T Consensus        70 ~~~~~~~~~LG~G~f--g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~  147 (367)
T 3l9p_A           70 RKNITLIRGLGHGAF--GEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL  147 (367)
T ss_dssp             GGGEEEEEECCCCSS--SCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HhHeEEeeEeeeCCC--EEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            356777888999999  9999984           1222222211   12234779999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC---cEE
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAE-----RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAK  158 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~---~~k  158 (274)
                      ..++||||+++|+|.+++.....     ..+++..++.++.|++.||.|||+.   +++||||||+||+++.++   .+|
T Consensus       148 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~k  224 (367)
T 3l9p_A          148 PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK  224 (367)
T ss_dssp             SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEE
T ss_pred             CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEE
Confidence            99999999999999999986432     3599999999999999999999999   999999999999998544   599


Q ss_pred             Eeccccceec-------------CCCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHH
Q 048314          159 ISDFGLAKLL-------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVY  224 (274)
Q Consensus       159 l~d~g~~~~~-------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~  224 (274)
                      |+|||+++..             +++.|+|||.+....++.++|||||||++|||++ |..||....   .. .+..   
T Consensus       225 L~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~---~~-~~~~---  297 (367)
T 3l9p_A          225 IGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS---NQ-EVLE---  297 (367)
T ss_dssp             ECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC---HH-HHHH---
T ss_pred             ECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC---HH-HHHH---
Confidence            9999998632             2557999999988899999999999999999998 999996431   11 1111   


Q ss_pred             HHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          225 KCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       ....+.      ....+...+..+.+++.+||+.||++|||+.+|++.|
T Consensus       298 -~i~~~~------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l  340 (367)
T 3l9p_A          298 -FVTSGG------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERI  340 (367)
T ss_dssp             -HHHTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -HHHcCC------CCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence             111110      1123445667899999999999999999999999864

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.6e-43  Score=301.47  Aligned_cols=238  Identities=17%  Similarity=0.180  Sum_probs=194.6

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ....++|...+.+|.|+|  |.||++..      .++|... .....+.+.+|+.++++++||||+++++++.+.+..++
T Consensus         9 ~~~~~~~~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   86 (288)
T 3kfa_A            9 EMERTDITMKHKLGGGQY--GEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI   86 (288)
T ss_dssp             BCCGGGEEEEEESGGGTT--CSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEE
T ss_pred             cccccceeEEeecCCCCc--eeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEE
Confidence            345678888999999999  99999822      1122222 22334567899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ||||+++++|.+++.......+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+.... 
T Consensus        87 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~  163 (288)
T 3kfa_A           87 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTG  163 (288)
T ss_dssp             EEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCS
T ss_pred             EEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccC
Confidence            99999999999999876667799999999999999999999999   99999999999999999999999999987543 


Q ss_pred             -----------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          170 -----------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       170 -----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                                 ++.|+|||.+....++.++||||||+++|+|++ |..||.......    ...    .     ..... 
T Consensus       164 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~----~~~----~-----~~~~~-  229 (288)
T 3kfa_A          164 DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ----VYE----L-----LEKDY-  229 (288)
T ss_dssp             SSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG----HHH----H-----HHTTC-
T ss_pred             CccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH----HHH----H-----HhccC-
Confidence                       346999999988889999999999999999999 899986432111    000    0     00000 


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       230 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l  266 (288)
T 3kfa_A          230 RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAF  266 (288)
T ss_dssp             CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHH
Confidence            1124455668899999999999999999999998864

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=4.5e-42  Score=293.64  Aligned_cols=240  Identities=12%  Similarity=0.011  Sum_probs=192.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .++|...+.+|.|++  |.||+|.      ..++|........+.+.+|+.+++++ +|+|++++++++.+....++|||
T Consensus         9 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e   86 (298)
T 1csn_A            9 GVHYKVGRRIGEGSF--GVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID   86 (298)
T ss_dssp             TTTEEEEEEEEECSS--CEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred             ccceEEEEEEeecCC--EEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence            356888899999999  9999983      22233444455677899999999999 69999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc-----EEEeccccceec
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-----AKISDFGLAKLL  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~-----~kl~d~g~~~~~  168 (274)
                      |+ +++|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.     ++|+|||++...
T Consensus        87 ~~-~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~  161 (298)
T 1csn_A           87 LL-GPSLEDLLDL-CGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFY  161 (298)
T ss_dssp             CC-CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEES
T ss_pred             ec-CCCHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECcccccc
Confidence            99 9999999986 345699999999999999999999999   9999999999999987765     999999998643


Q ss_pred             ------------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh
Q 048314          169 ------------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR  230 (274)
Q Consensus       169 ------------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                                        +++.|+|||.+....++.++||||||+++|+|++|+.||...........+.... ......
T Consensus       162 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~  240 (298)
T 1csn_A          162 RDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIG-EKKQST  240 (298)
T ss_dssp             BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHH-HHHHHS
T ss_pred             ccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHH-hhccCc
Confidence                              2567999999998889999999999999999999999997643222221111111 100000


Q ss_pred             hhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          231 ELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ....      .....+..+.+++.+||+.||++|||+.+|++.|
T Consensus       241 ~~~~------~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l  278 (298)
T 1csn_A          241 PLRE------LCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLF  278 (298)
T ss_dssp             CHHH------HTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHH
T ss_pred             cHHH------HHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHH
Confidence            0111      1223457899999999999999999999998764

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=1.8e-43  Score=320.11  Aligned_cols=235  Identities=19%  Similarity=0.231  Sum_probs=188.5

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH-----HHHHHhcC-CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNS-PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ..++|.....+|.|+|  |.||+|..     .++|.... ....+.|.+|+.+|++++||||+++++++.+ +..++|||
T Consensus       182 ~~~~~~~~~~lG~G~f--g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e  258 (452)
T 1fmk_A          182 PRESLRLEVKLGQGCF--GEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE  258 (452)
T ss_dssp             CGGGEEEEEEEEECSS--CEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred             ChhHceeeeeecCCCC--eEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEeh
Confidence            3456777888999999  99999821     22222222 2344678899999999999999999999876 67899999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++|+|.+++.......+++..++.++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++...    
T Consensus       259 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  335 (452)
T 1fmk_A          259 YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY  335 (452)
T ss_dssp             CCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-------
T ss_pred             hhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCCce
Confidence            99999999999754345699999999999999999999999   99999999999999999999999999987542    


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                              +..|+|||.+....++.++||||||+++|||++ |..||....   .. ...    .....+     . ..+
T Consensus       336 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~---~~-~~~----~~i~~~-----~-~~~  401 (452)
T 1fmk_A          336 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV---NR-EVL----DQVERG-----Y-RMP  401 (452)
T ss_dssp             -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC---HH-HHH----HHHHTT-----C-CCC
T ss_pred             ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCC---HH-HHH----HHHHcC-----C-CCC
Confidence                    346999999998899999999999999999999 899996431   11 010    111111     0 113


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+..++..+.+++.+||+.||++|||+++|++.|
T Consensus       402 ~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L  435 (452)
T 1fmk_A          402 CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFL  435 (452)
T ss_dssp             CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            4556778899999999999999999999998764

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.1e-43  Score=310.08  Aligned_cols=236  Identities=19%  Similarity=0.187  Sum_probs=191.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH-------------HHHHHHhcCCCC---CCcHHHHHHHHhcC-CCCccceEeEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM-------------RALMATVNSPYS---PSRPLTLTSIVSRV-SWTTDIEVSSVA   82 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~-------------~~~~~~~~~~~~---~~~~~~e~~~l~~l-~h~niv~l~~~~   82 (274)
                      ..++|...+.||+|+|  |.||++.             ..++|.......   .+.+.+|+++++++ +||||+++++++
T Consensus        67 ~~~~y~i~~~LG~G~~--g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~  144 (382)
T 3tt0_A           67 PRDRLVLGKPLGEGAF--GQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGAC  144 (382)
T ss_dssp             CGGGEEEEEEEEECSS--EEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             chhheEeeeEEecCCC--eEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeee
Confidence            3467888899999999  9999883             122333332211   24577999999999 899999999999


Q ss_pred             EeCCcceEEEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCc
Q 048314           83 MRGSKPSTEAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN  148 (274)
Q Consensus        83 ~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~n  148 (274)
                      .+.+..++||||+++|+|.+++....              ...+++..++.++.|++.||.|||+.   +++||||||+|
T Consensus       145 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~N  221 (382)
T 3tt0_A          145 TQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARN  221 (382)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGG
T ss_pred             ccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcce
Confidence            99999999999999999999998743              24599999999999999999999999   99999999999


Q ss_pred             eEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCCh
Q 048314          149 ILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKP  214 (274)
Q Consensus       149 il~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~  214 (274)
                      |+++.++.+||+|||++....             +..|+|||.+....++.++||||||+++|+|++ |..||....   
T Consensus       222 Ill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~---  298 (382)
T 3tt0_A          222 VLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP---  298 (382)
T ss_dssp             EEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC---
T ss_pred             EEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC---
Confidence            999999999999999987543             346999999998899999999999999999999 999996431   


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          215 EEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .. .+.    .......      ....+...+..+.+++.+||+.||++|||+.||++.|
T Consensus       299 ~~-~~~----~~~~~~~------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  347 (382)
T 3tt0_A          299 VE-ELF----KLLKEGH------RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  347 (382)
T ss_dssp             HH-HHH----HHHHTTC------CCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HH-HHH----HHHHcCC------CCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            11 111    1111110      1123445667899999999999999999999999864

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=8.9e-44  Score=308.41  Aligned_cols=248  Identities=20%  Similarity=0.248  Sum_probs=183.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH----HHHHHhcC-CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC----cceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR----ALMATVNS-PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS----KPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~----~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv   91 (274)
                      .++|...+.+|.|+|  |.||+|..    .++|.... ......+.+|+.++++++||||+++++++.+..    ..++|
T Consensus        23 ~~~y~~~~~lg~G~~--g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv  100 (322)
T 3soc_A           23 SMPLQLLEVKARGRF--GCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI  100 (322)
T ss_dssp             TEEEEEEEEEECSTT--CEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             hhhchhhheecccCc--eEEEEEEECCCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence            467888899999999  99999921    11222111 112223456899999999999999999998754    36999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-------CCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC-------EPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~-------~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      |||+++|+|.+++..   ..+++..++.++.|++.||.|||+.+       ..+++||||||+||+++.++.+||+|||+
T Consensus       101 ~e~~~~g~L~~~l~~---~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~  177 (322)
T 3soc_A          101 TAFHEKGSLSDFLKA---NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGL  177 (322)
T ss_dssp             EECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             EecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCc
Confidence            999999999999976   45999999999999999999999752       22899999999999999999999999999


Q ss_pred             ceec-------------CCCCcCCCcccccC-----CCccccceeehhHhHHHHhhcCCCccccCCChhh---HH-----
Q 048314          165 AKLL-------------SDKGCMAPECYKRT-----PISVKADVYGYGIVLLETICCWENMEIDASKPEE---II-----  218 (274)
Q Consensus       165 ~~~~-------------~~~~~~ape~~~~~-----~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~---~~-----  218 (274)
                      ++..             +++.|+|||.+...     .++.++||||||+++|||++|+.||.........   ..     
T Consensus       178 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~  257 (322)
T 3soc_A          178 ALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHP  257 (322)
T ss_dssp             CEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSC
T ss_pred             ccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCC
Confidence            8542             26679999998763     4567899999999999999999999753221100   00     


Q ss_pred             -HHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          219 -LTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       219 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       ...+ ..................+...+..+.+++.+||+.||++|||+.||++.|
T Consensus       258 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L  313 (322)
T 3soc_A          258 SLEDM-QEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERI  313 (322)
T ss_dssp             CHHHH-HHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             chhhh-hhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence             0000 000000000111111112335667899999999999999999999999875

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=2.6e-42  Score=304.03  Aligned_cols=244  Identities=11%  Similarity=0.038  Sum_probs=185.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC-------------CCCCcHHHHHHHHhcCCCCcc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP-------------YSPSRPLTLTSIVSRVSWTTD   75 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~-------------~~~~~~~~e~~~l~~l~h~ni   75 (274)
                      ..++|...+.||.|+|  |.||+|..           .++|.....             .....+..|+..++.++||||
T Consensus        33 ~~~~y~~~~~lG~G~~--g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~i  110 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGF--GCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGV  110 (364)
T ss_dssp             TCCEEEEEEECCCC-C--CEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCS
T ss_pred             CCCeEEEEEEEecCCC--eEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCC
Confidence            3458888999999999  99999821           112211111             011223456667778889999


Q ss_pred             ceEeEEEEeC----CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 048314           76 IEVSSVAMRG----SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM  151 (274)
Q Consensus        76 v~l~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~  151 (274)
                      +++++++.+.    ...++||||+ +++|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||++
T Consensus       111 v~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill  185 (364)
T 3op5_A          111 PKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEA-NAKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLL  185 (364)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEE
T ss_pred             CeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEE
Confidence            9999998764    4589999999 9999999987 446799999999999999999999999   99999999999999


Q ss_pred             c--CCCcEEEeccccceec------------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccC
Q 048314          152 D--EFWTAKISDFGLAKLL------------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDA  211 (274)
Q Consensus       152 ~--~~~~~kl~d~g~~~~~------------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~  211 (274)
                      +  .++.+||+|||+++..                  +++.|+|||.+....++.++||||||+++|||++|..||....
T Consensus       186 ~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~  265 (364)
T 3op5_A          186 NYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNL  265 (364)
T ss_dssp             ESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred             ecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccc
Confidence            8  8899999999999643                  4678999999998889999999999999999999999997542


Q ss_pred             CChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          212 SKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .......   ..... ....+..++++...+...+..+.+++..||+.||++|||+.+|++.|
T Consensus       266 ~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l  324 (364)
T 3op5_A          266 KDPKYVR---DSKIR-YRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDIL  324 (364)
T ss_dssp             TCHHHHH---HHHHH-HHHCHHHHHHHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred             cCHHHHH---HHHHH-hhhhHHHHHHHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence            2221111   11111 11112222221111223457899999999999999999999998764

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.3e-42  Score=298.92  Aligned_cols=248  Identities=11%  Similarity=0.092  Sum_probs=190.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC--cce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS--KPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~   89 (274)
                      .++|.....+|.|+|  |.||+|..      .++|....   ....+.+.+|++++++++||||+++++++.+.+  ..+
T Consensus         8 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   85 (319)
T 4euu_A            8 NHLWLLSDILGQGAT--ANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV   85 (319)
T ss_dssp             SEEEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred             CCCEEEEEEecCCCC--eEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEE
Confidence            356788899999999  99999821      12222221   123455679999999999999999999998755  679


Q ss_pred             EEEEeCCCCCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE----cCCCcEEEecccc
Q 048314           90 TEAALDLPWDLAYIIFCSAE-RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKISDFGL  164 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~----~~~~~~kl~d~g~  164 (274)
                      +||||+++++|.+++..... ..+++..++.++.|++.||.|||+.   +++||||||+||++    +.++.+||+|||+
T Consensus        86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~  162 (319)
T 4euu_A           86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA  162 (319)
T ss_dssp             EEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTT
T ss_pred             EEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCC
Confidence            99999999999999986422 2399999999999999999999999   99999999999998    7788899999999


Q ss_pred             ceec----------CCCCcCCCcccc--------cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH
Q 048314          165 AKLL----------SDKGCMAPECYK--------RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC  226 (274)
Q Consensus       165 ~~~~----------~~~~~~ape~~~--------~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~  226 (274)
                      +...          +++.|+|||++.        ...++.++||||||+++|||++|..||..............-....
T Consensus       163 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~  242 (319)
T 4euu_A          163 ARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITG  242 (319)
T ss_dssp             CEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHH
T ss_pred             ceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcC
Confidence            9754          256799999886        4678899999999999999999999997543333222221111111


Q ss_pred             Hhhhhhh--------------hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          227 FINRELN--------------KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       227 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .......              ..-.....+......+.+++.+||+.||++|||++|+++.
T Consensus       243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h  303 (319)
T 4euu_A          243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAE  303 (319)
T ss_dssp             CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHH
T ss_pred             CCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhc
Confidence            0000000              0001113567888999999999999999999999999874

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=3.5e-43  Score=304.93  Aligned_cols=232  Identities=14%  Similarity=0.136  Sum_probs=187.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH----------HHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR----------ALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      ++|...+.+|.|+|  |.||+|..          .++|....   ....+.+.+|+.++++++||||+++++++. .+..
T Consensus        13 ~~y~~~~~lG~G~~--g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~   89 (325)
T 3kex_A           13 TELRKLKVLGSGVF--GTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSL   89 (325)
T ss_dssp             TTEEEEEEEECCSS--CEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSE
T ss_pred             hHceeeeeeeecCC--ceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCcc
Confidence            46777889999999  99999821          22222222   234466789999999999999999999886 4568


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||||+.+|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++..
T Consensus        90 ~~v~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~  165 (325)
T 3kex_A           90 QLVTQYLPLGSLLDHVRQ-HRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLL  165 (325)
T ss_dssp             EEEEECCTTCBSHHHHHS-SGGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGS
T ss_pred             EEEEEeCCCCCHHHHHHH-ccccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCccccc
Confidence            999999999999999986 345799999999999999999999999   9999999999999999999999999998754


Q ss_pred             C-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 S-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .             +..|+|||.+....++.++||||||+++|+|++ |..||.......    +..    .....    
T Consensus       166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~----~~~----~~~~~----  233 (325)
T 3kex_A          166 PPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAE----VPD----LLEKG----  233 (325)
T ss_dssp             CCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTH----HHH----HHHTT----
T ss_pred             CcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHH----HHH----HHHcC----
Confidence            2             347999999998899999999999999999999 999997542111    110    01110    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       234 --~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l  271 (325)
T 3kex_A          234 --ERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEF  271 (325)
T ss_dssp             --CBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHH
T ss_pred             --CCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence              01123344556789999999999999999999998864

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=5.4e-42  Score=296.92  Aligned_cols=229  Identities=18%  Similarity=0.141  Sum_probs=188.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHH----------HHH-HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM----------RAL-MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~----------~~~-~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.+|.|+|  |.||++.          +.+ +.........+.+.+|+.+++.++||||+++++++.+....+
T Consensus         5 ~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~   82 (318)
T 1fot_A            5 LQDFQILRTLGTGSF--GRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIF   82 (318)
T ss_dssp             GGGEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEE
T ss_pred             hHHcEEEEEEeeCCC--EEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEE
Confidence            467888999999999  9999871          111 111112234455778999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      +||||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++.. 
T Consensus        83 lv~e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~  157 (318)
T 1fot_A           83 MIMDYIEGGELFSLLRK--SQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVP  157 (318)
T ss_dssp             EEECCCCSCBHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECS
T ss_pred             EEEeCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecC
Confidence            99999999999999986  45799999999999999999999999   9999999999999999999999999998754 


Q ss_pred             -------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC-Cc
Q 048314          169 -------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TE  240 (274)
Q Consensus       169 -------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  240 (274)
                             +++.|+|||++....++.++|+||||+++|||++|..||....   ... ..            ..+... ..
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~---~~~-~~------------~~i~~~~~~  221 (318)
T 1fot_A          158 DVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN---TMK-TY------------EKILNAELR  221 (318)
T ss_dssp             SCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS---HHH-HH------------HHHHHCCCC
T ss_pred             CccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC---HHH-HH------------HHHHhCCCC
Confidence                   3678999999998899999999999999999999999996431   111 10            011111 12


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      .+...+.++.+++.+||+.||++||     +++|+++
T Consensus       222 ~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          222 FPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             CCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             CCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence            4445667899999999999999999     8888875

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=2.1e-42  Score=304.38  Aligned_cols=234  Identities=17%  Similarity=0.137  Sum_probs=186.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCC--------CCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPY--------SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~--------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      .+.|.....+|.|+|  |.||++..      .++|.+....        ..+.+.+|+.+|++++||||+++++++.+.+
T Consensus        11 ~~~y~~~~~LG~G~f--g~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~   88 (361)
T 2yab_A           11 EDFYDIGEELGSGQF--AIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRT   88 (361)
T ss_dssp             GGTEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             hhceEEeeEEeeCcC--EEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCC
Confidence            456888899999999  99999821      1222222211        1245779999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC----cEEEecc
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW----TAKISDF  162 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~----~~kl~d~  162 (274)
                      ..++||||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||++..++    .+||+||
T Consensus        89 ~~~lv~e~~~gg~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DF  163 (361)
T 2yab_A           89 DVVLILELVSGGELFDFLAQ--KESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDF  163 (361)
T ss_dssp             EEEEEEECCCSCBHHHHHTT--CSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCC
T ss_pred             EEEEEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEec
Confidence            99999999999999999975  45799999999999999999999999   999999999999998776    7999999


Q ss_pred             ccceec----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          163 GLAKLL----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       163 g~~~~~----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      |++...          +++.|+|||++....++.++|+||||+++|+|++|..||...   .....+..     +.....
T Consensus       164 G~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~---~~~~~~~~-----i~~~~~  235 (361)
T 2yab_A          164 GLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD---TKQETLAN-----ITAVSY  235 (361)
T ss_dssp             SSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS---SHHHHHHH-----HHTTCC
T ss_pred             CCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC---CHHHHHHH-----HHhcCC
Confidence            998753          366799999999888999999999999999999999999643   11111100     011000


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         -.+.......+..+.+++.+||+.||++|||+.|+++
T Consensus       236 ---~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          236 ---DFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             ---CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ---CCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence               0000111234567899999999999999999999986

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=3.1e-42  Score=306.42  Aligned_cols=238  Identities=16%  Similarity=0.169  Sum_probs=187.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-------HHHH---H-HhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-------RALM---A-TVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~---~-~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~   88 (274)
                      .++|...+.||+|+|  |.||++.       +++|   + ........+.+.+|..++.++ +||||+++++++.+.+..
T Consensus        51 ~~~y~~~~~LG~G~f--G~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~  128 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSY--AKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRL  128 (396)
T ss_dssp             GGGEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             hhHcEEEEEEeeCCC--eEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEE
Confidence            468888999999999  9999881       1111   1 112224456678999999887 799999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||||+++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus       129 ~lV~E~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~  203 (396)
T 4dc2_A          129 FFVIEYVNGGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG  203 (396)
T ss_dssp             EEEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred             EEEEEcCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeec
Confidence            999999999999999986  45799999999999999999999999   9999999999999999999999999998642


Q ss_pred             -----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhH-HHHHHHHHHHhhhhhhhhh
Q 048314          169 -----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI-ILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       169 -----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  236 (274)
                                 +++.|+|||++....++.++|+|||||++|||++|..||.......... .....+......       
T Consensus       204 ~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~-------  276 (396)
T 4dc2_A          204 LRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILE-------  276 (396)
T ss_dssp             CCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHH-------
T ss_pred             ccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhc-------
Confidence                       2678999999999999999999999999999999999996432211110 000111111111       


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCCh------hhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSM------KCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~------~evl~  272 (274)
                      .....|...+..+.+++.+||+.||++||++      .|+++
T Consensus       277 ~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~  318 (396)
T 4dc2_A          277 KQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQG  318 (396)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHH
T ss_pred             cccCCCCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhc
Confidence            1113555667889999999999999999996      56654

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=7e-44  Score=304.91  Aligned_cols=243  Identities=18%  Similarity=0.180  Sum_probs=186.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHH----------HHHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEe--CC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM----------RALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--GS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~----------~~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~   86 (274)
                      .++|...+.+|.|+|  |.||++.          ..++|.....  ...+.+.+|+.++++++||||+++++++.+  ..
T Consensus         9 ~~~~~~~~~lg~G~~--g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   86 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNF--GSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR   86 (295)
T ss_dssp             GGGEEEEEEEEECSS--EEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHT
T ss_pred             HHHhhhhheeeccCC--EEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC
Confidence            367777889999999  9999873          1122222221  122457799999999999999999999865  35


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||++.
T Consensus        87 ~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~  162 (295)
T 3ugc_A           87 NLKLIMEYLPYGSLRDYLQK-HKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTK  162 (295)
T ss_dssp             SCEEEEECCTTCBHHHHHHH-CGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC
T ss_pred             ceEEEEEeCCCCCHHHHHHh-cccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccc
Confidence            58999999999999999987 344699999999999999999999999   99999999999999999999999999987


Q ss_pred             ecC--------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH----Hh
Q 048314          167 LLS--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC----FI  228 (274)
Q Consensus       167 ~~~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~----~~  228 (274)
                      ...              +..|+|||.+....++.++||||||+++|+|++|..|+....   ..  ........    ..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~---~~--~~~~~~~~~~~~~~  237 (295)
T 3ugc_A          163 VLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP---AE--FMRMIGNDKQGQMI  237 (295)
T ss_dssp             -------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHH---HH--HHHHHCTTCCTHHH
T ss_pred             cccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCCh---HH--HHhhhcCccccchh
Confidence            543              234999999998899999999999999999999999985321   00  00000000    00


Q ss_pred             hhhhhh-hhc--CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          229 NRELNK-LVR--GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       229 ~~~~~~-~~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...... ...  ..+.+..++..+.+++.+||+.||++|||+.|+++.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L  286 (295)
T 3ugc_A          238 VFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRV  286 (295)
T ss_dssp             HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence            000001 111  1134556778999999999999999999999998864

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=2.7e-43  Score=303.36  Aligned_cols=240  Identities=18%  Similarity=0.185  Sum_probs=192.6

Q ss_pred             hHHHHhhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEE
Q 048314           16 SLCTKLRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSV   81 (274)
Q Consensus        16 ~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~   81 (274)
                      +..-..++|...+.+|.|+|  |.||++..           .++|......   ..+.+.+|+.++++++||||++++++
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~   94 (314)
T 2ivs_A           17 KWEFPRKNLVLGKTLGEGEF--GKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGA   94 (314)
T ss_dssp             TTBCCGGGEEEEEEEEECSS--SEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             ccccchhheeeeeeecccCC--eeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEE
Confidence            33444677888899999999  99999831           2223222211   12456789999999999999999999


Q ss_pred             EEeCCcceEEEEeCCCCCHHHHHHhCCC----------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 048314           82 AMRGSKPSTEAALDLPWDLAYIIFCSAE----------------------RNPYWNQRVRIALDVAKGILYLHDECEPPI  139 (274)
Q Consensus        82 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~----------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i  139 (274)
                      +.+.+..++||||+++|+|.+++.....                      ..+++..++.++.|++.||.|||+.   ++
T Consensus        95 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i  171 (314)
T 2ivs_A           95 CSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KL  171 (314)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred             EecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CC
Confidence            9999999999999999999999987432                      2389999999999999999999999   99


Q ss_pred             ccCCCCCCceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCC
Q 048314          140 LHCDIKPQNILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWE  205 (274)
Q Consensus       140 ~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~  205 (274)
                      +|+||||+||+++.++.++|+|||++....             ++.|+|||.+....++.++||||||+++|+|++ |..
T Consensus       172 vH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~  251 (314)
T 2ivs_A          172 VHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGN  251 (314)
T ss_dssp             ECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred             cccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999987542             345999999988889999999999999999999 999


Q ss_pred             CccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          206 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ||......  .  +.    ......      .....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       252 p~~~~~~~--~--~~----~~~~~~------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l  306 (314)
T 2ivs_A          252 PYPGIPPE--R--LF----NLLKTG------HRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDL  306 (314)
T ss_dssp             SSTTCCGG--G--HH----HHHHTT------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCHH--H--HH----HHhhcC------CcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            99643111  1  00    111111      01124455678899999999999999999999998764

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=7.5e-42  Score=291.06  Aligned_cols=235  Identities=18%  Similarity=0.218  Sum_probs=185.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCC---------CCCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPY---------SPSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~---------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      .++|...+.+|.|+|  |.||++..      .++|......         ..+.+.+|+.++++++||||+++++++.+.
T Consensus        18 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   95 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGF--GLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP   95 (287)
T ss_dssp             STTEEEEEECCCCSS--SCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT
T ss_pred             hccceehhccccCCc--eeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC
Confidence            467888899999999  99998822      2222222111         115677999999999999999999998655


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--cccCCCCCCceEEcCCCc-----EE
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDEFWT-----AK  158 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~~~~~-----~k  158 (274)
                      .  ++||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +  ++|+||||+||+++.++.     +|
T Consensus        96 ~--~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~k  169 (287)
T 4f0f_A           96 P--RMVMEFVPCGDLYHRLLD-KAHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAK  169 (287)
T ss_dssp             T--EEEEECCTTCBHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEE
T ss_pred             C--eEEEEecCCCCHHHHHhc-ccCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEE
Confidence            4  799999999999999976 456799999999999999999999999   8  999999999999987776     99


Q ss_pred             Eeccccceec--------CCCCcCCCcccc--cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh
Q 048314          159 ISDFGLAKLL--------SDKGCMAPECYK--RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI  228 (274)
Q Consensus       159 l~d~g~~~~~--------~~~~~~ape~~~--~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~  228 (274)
                      |+|||++...        +++.|+|||.+.  ...++.++||||||+++|+|++|..||.........  .....    .
T Consensus       170 l~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~--~~~~~----~  243 (287)
T 4f0f_A          170 VADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIK--FINMI----R  243 (287)
T ss_dssp             ECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHH--HHHHH----H
T ss_pred             eCCCCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHH--HHHHH----h
Confidence            9999998643        367899999984  445788999999999999999999999754222111  11100    0


Q ss_pred             hhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          229 NRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .    ... ....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       244 ~----~~~-~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L  284 (287)
T 4f0f_A          244 E----EGL-RPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKEL  284 (287)
T ss_dssp             H----SCC-CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             c----cCC-CCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence            0    001 1134556678899999999999999999999999865

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=8.9e-43  Score=305.52  Aligned_cols=237  Identities=19%  Similarity=0.201  Sum_probs=181.3

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ...++|...+.+|.|+|  |.||+|..      .++|........+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus        50 ~~~~~y~~~~~lG~G~~--g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~  127 (349)
T 2w4o_A           50 ALSDFFEVESELGRGAT--SIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVL  127 (349)
T ss_dssp             CGGGTEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccCcEEEeeEEeeCCC--EEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEE
Confidence            34567888999999999  99999821      22333444345567889999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEeccccceec-
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGLAKLL-  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~d~g~~~~~-  168 (274)
                      ||+++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.   ++.+||+|||++... 
T Consensus       128 e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~  202 (349)
T 2w4o_A          128 ELVTGGELFDRIVE--KGYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVE  202 (349)
T ss_dssp             CCCCSCBHHHHHTT--CSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC------
T ss_pred             EeCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccC
Confidence            99999999999975  45699999999999999999999999   9999999999999975   889999999998643 


Q ss_pred             ---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               +++.|+|||.+.+..++.++|||||||++|+|++|..||......   ..+    .....+...   ....
T Consensus       203 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~---~~~----~~~i~~~~~---~~~~  272 (349)
T 2w4o_A          203 HQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD---QFM----FRRILNCEY---YFIS  272 (349)
T ss_dssp             ----------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH---HHH----HHHHHTTCC---CCCT
T ss_pred             cccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc---HHH----HHHHHhCCC---ccCC
Confidence                     266799999999888999999999999999999999999643211   101    011111110   0011


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +.....+..+.+++.+||+.||++|||+.|+++
T Consensus       273 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          273 PWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             chhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            122345678999999999999999999999986

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=9.3e-42  Score=299.24  Aligned_cols=235  Identities=20%  Similarity=0.162  Sum_probs=185.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-------HHHH----HHhcC--CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-------RALM----ATVNS--PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~----~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      .+.|.....||.|+|  |.||++.       +++|    .....  ....+.+.+|+.++++++||||+++++++.+.+.
T Consensus        23 ~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~  100 (351)
T 3c0i_A           23 EDVYELCEVIGKGPF--SVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGM  100 (351)
T ss_dssp             HHHEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             ccceEEeeEEeeCCC--EEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence            457888999999999  9999981       1111    11111  1234567899999999999999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc---EEEecc
Q 048314           88 PSTEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT---AKISDF  162 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~---~kl~d~  162 (274)
                      .++|||||++|+|.+++...  ....+++..++.++.|++.||.|||++   +++||||||+||+++.++.   +||+||
T Consensus       101 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Df  177 (351)
T 3c0i_A          101 LYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGF  177 (351)
T ss_dssp             EEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCC
T ss_pred             EEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecC
Confidence            99999999999999888653  234589999999999999999999999   9999999999999976544   999999


Q ss_pred             ccceec-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhh
Q 048314          163 GLAKLL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRE  231 (274)
Q Consensus       163 g~~~~~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  231 (274)
                      |++...           +++.|+|||.+....++.++|||||||++|+|++|..||...   .. . +.    .......
T Consensus       178 g~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~---~~-~-~~----~~i~~~~  248 (351)
T 3c0i_A          178 GVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT---KE-R-LF----EGIIKGK  248 (351)
T ss_dssp             TTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS---HH-H-HH----HHHHHTC
T ss_pred             cceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc---HH-H-HH----HHHHcCC
Confidence            998653           256799999999888999999999999999999999999643   11 1 10    1111110


Q ss_pred             hhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          232 LNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..   .........+..+.+++.+||+.||++|||+.|+++
T Consensus       249 ~~---~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          249 YK---MNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             CC---CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CC---CCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            00   000001123578899999999999999999999986

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-42  Score=301.75  Aligned_cols=228  Identities=18%  Similarity=0.154  Sum_probs=187.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-------HHHH----HHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-------RALM----ATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~----~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.+|.|+|  |.||++.       +++|    .........+.+.+|+.+++.++||||+++++++.+.+..+
T Consensus         8 i~~Y~i~~~lG~G~~--g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~   85 (336)
T 3h4j_B            8 IGPYIIRETLGEGSF--GKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIV   85 (336)
T ss_dssp             ETTEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             cCCEEEEEEEecCCC--eEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE
Confidence            367888899999999  9999882       1111    11222234556889999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      +||||+ +|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++... 
T Consensus        86 lv~E~~-~g~l~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~  159 (336)
T 3h4j_B           86 MVIEYA-GGELFDYIVE--KKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMT  159 (336)
T ss_dssp             EEECCC-CEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTT
T ss_pred             EEEECC-CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceecc
Confidence            999999 6899999876  35799999999999999999999999   9999999999999999999999999998643 


Q ss_pred             ---------CCCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          169 ---------SDKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                               +++.|+|||.+.+..+ +.++||||||+++|+|++|..||........                ...+...
T Consensus       160 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~----------------~~~i~~~  223 (336)
T 3h4j_B          160 DGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL----------------FKKVNSC  223 (336)
T ss_dssp             TSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC----------------BCCCCSS
T ss_pred             CCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH----------------HHHHHcC
Confidence                     3678999999987776 6899999999999999999999974421110                0011111


Q ss_pred             -CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          239 -TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       239 -~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       ...+...+..+.+++.+||+.||.+|||+.|+++
T Consensus       224 ~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~  258 (336)
T 3h4j_B          224 VYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR  258 (336)
T ss_dssp             CCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred             CCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence             1345556778999999999999999999999975

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=2.3e-42  Score=306.92  Aligned_cols=250  Identities=12%  Similarity=0.051  Sum_probs=187.6

Q ss_pred             HHHhhhccccccCCCC--CCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           18 CTKLRNFCRSSLNDRN--SPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g--~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      ....++|...+.+|+|  +|  |.||++..      .++|.+...    ...+.+.+|+.++++++|||||++++++.+.
T Consensus        21 ~~~~~~y~~~~~lG~G~~~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~   98 (389)
T 3gni_B           21 LPEGGCYELLTVIGKGFEDL--MTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIAD   98 (389)
T ss_dssp             CCCGGGEEEEEEEEEETTTT--EEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             cCCCCcEEEEecccCCcCCc--eEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEEC
Confidence            3456788889999999  88  99999821      122222211    1224456899999999999999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      +..++|||||++|+|.+++.......+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||.+
T Consensus        99 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~  175 (389)
T 3gni_B           99 NELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSN  175 (389)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGC
T ss_pred             CEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccc
Confidence            9999999999999999999876557799999999999999999999999   9999999999999999999999999986


Q ss_pred             eec------------------CCCCcCCCccccc--CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH
Q 048314          166 KLL------------------SDKGCMAPECYKR--TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK  225 (274)
Q Consensus       166 ~~~------------------~~~~~~ape~~~~--~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~  225 (274)
                      ...                  ++..|+|||.+..  ..++.++|||||||++|+|++|..||..................
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~  255 (389)
T 3gni_B          176 LSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVP  255 (389)
T ss_dssp             EECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC------
T ss_pred             eeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCC
Confidence            432                  2456999999987  57899999999999999999999999754222211110000000


Q ss_pred             HHhh-------------------hhhhh------------hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          226 CFIN-------------------RELNK------------LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       226 ~~~~-------------------~~~~~------------~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....                   .....            .....+.+...+..+.+|+.+||+.||++|||+.|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~  333 (389)
T 3gni_B          256 CLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN  333 (389)
T ss_dssp             --------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             ccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence            0000                   00000            00000233445678999999999999999999999985

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=4.3e-42  Score=302.52  Aligned_cols=237  Identities=15%  Similarity=0.068  Sum_probs=183.7

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ..++|...+.+|.|+|  |.||++..      .++|.+. .....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus        18 ~~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~   95 (361)
T 3uc3_A           18 DSDRYDFVKDIGSGNF--GVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIM   95 (361)
T ss_dssp             CTTTEEEEEEESSSTT--SSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCcEEEEEEeccCCC--EEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEE
Confidence            3467888999999999  99998821      2223222 2334566789999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc--EEEeccccceec--
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT--AKISDFGLAKLL--  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~--~kl~d~g~~~~~--  168 (274)
                      ||+.+|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.  +||+|||+++..  
T Consensus        96 e~~~~~~L~~~l~~--~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~  170 (361)
T 3uc3_A           96 EYASGGELYERICN--AGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL  170 (361)
T ss_dssp             ECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC-----
T ss_pred             EeCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccccc
Confidence            99999999999975  35699999999999999999999999   9999999999999987665  999999988632  


Q ss_pred             --------CCCCcCCCcccccCCCccc-cceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 --------SDKGCMAPECYKRTPISVK-ADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 --------~~~~~~ape~~~~~~~~~~-~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                              +++.|+|||.+....++.+ +||||||+++|+|++|+.||..............   ... ..   .  ...
T Consensus       171 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~---~~~-~~---~--~~~  241 (361)
T 3uc3_A          171 HSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQ---RIL-SV---K--YSI  241 (361)
T ss_dssp             ----------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHH---HHH-TT---C--CCC
T ss_pred             cCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHH---HHh-cC---C--CCC
Confidence                    3678999999988777655 8999999999999999999975422221111111   000 00   0  000


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +.+...+..+.+++.+||+.||++|||+.|+++
T Consensus       242 ~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~  274 (361)
T 3uc3_A          242 PDDIRISPECCHLISRIFVADPATRISIPEIKT  274 (361)
T ss_dssp             CTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             CCcCCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence            112234578899999999999999999999986

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=6.5e-43  Score=306.72  Aligned_cols=241  Identities=17%  Similarity=0.175  Sum_probs=192.0

Q ss_pred             hHHHHhhhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCCCC---CCcHHHHHHHHhcC-CCCccceEeE
Q 048314           16 SLCTKLRNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSPYS---PSRPLTLTSIVSRV-SWTTDIEVSS   80 (274)
Q Consensus        16 ~l~~~~~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~~~---~~~~~~e~~~l~~l-~h~niv~l~~   80 (274)
                      +..-..++|.....+|.|+|  |.||++.           ..++|.......   .+.+.+|+.++.++ +||||+++++
T Consensus        16 ~~~~~~~~y~~~~~lG~G~~--g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~   93 (359)
T 3vhe_A           16 KWEFPRDRLKLGKPLGRGAF--GQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   93 (359)
T ss_dssp             HHBCCGGGEEEEEEEEECSS--EEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccccccceeeceeecCCCC--ceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeee
Confidence            34445688999999999999  9999983           222333332211   23478999999999 7899999999


Q ss_pred             EEEeCCc-ceEEEEeCCCCCHHHHHHhCCC--------------------------------------------------
Q 048314           81 VAMRGSK-PSTEAALDLPWDLAYIIFCSAE--------------------------------------------------  109 (274)
Q Consensus        81 ~~~~~~~-~~lv~e~~~~gsL~~~l~~~~~--------------------------------------------------  109 (274)
                      ++.+.+. .++||||+++|+|.+++.....                                                  
T Consensus        94 ~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (359)
T 3vhe_A           94 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSL  173 (359)
T ss_dssp             EECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------------
T ss_pred             eeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccccc
Confidence            9987554 8999999999999999986432                                                  


Q ss_pred             --------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314          110 --------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus       110 --------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                                    ..+++..++.++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++....      
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  250 (359)
T 3vhe_A          174 SDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV  250 (359)
T ss_dssp             ----------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCE
T ss_pred             chhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeecccccch
Confidence                          1289999999999999999999999   99999999999999999999999999987542      


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +..|+|||.+....++.++||||||+++|+|++ |..||........   +.    ......      .....
T Consensus       251 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~---~~----~~~~~~------~~~~~  317 (359)
T 3vhe_A          251 RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE---FC----RRLKEG------TRMRA  317 (359)
T ss_dssp             EC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH---HH----HHHHHT------CCCCC
T ss_pred             hccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHH---HH----HHHHcC------CCCCC
Confidence                   446999999998899999999999999999998 9999965422211   11    111111      01123


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       318 ~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  350 (359)
T 3vhe_A          318 PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  350 (359)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence            445667899999999999999999999999865

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=6.4e-43  Score=297.04  Aligned_cols=234  Identities=15%  Similarity=0.149  Sum_probs=181.7

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ..++|...+.+|.|+|  |.||+|..         .++|.....   ...+.+.+|+.++++++||||+++++++. .+.
T Consensus        13 ~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~   89 (281)
T 1mp8_A           13 QRERIELGRCIGEGQF--GDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENP   89 (281)
T ss_dssp             CGGGEEEEEEEEECSS--SEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSS
T ss_pred             ehHHeEEEeEeeecCC--eeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCc
Confidence            4567888899999999  99998832         112221111   12345779999999999999999999974 567


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||++..
T Consensus        90 ~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  165 (281)
T 1mp8_A           90 VWIIMELCTLGELRSFLQV-RKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRY  165 (281)
T ss_dssp             CEEEEECCTTEEHHHHHHH-TTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC------
T ss_pred             cEEEEecCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccc
Confidence            8999999999999999986 345699999999999999999999999   999999999999999999999999999865


Q ss_pred             cC------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          168 LS------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       168 ~~------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      ..            ++.|+|||.+....++.++||||||+++|+|++ |..||.......    ..    ......    
T Consensus       166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~----~~----~~i~~~----  233 (281)
T 1mp8_A          166 MEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND----VI----GRIENG----  233 (281)
T ss_dssp             -------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG----HH----HHHHTT----
T ss_pred             cCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH----HH----HHHHcC----
Confidence            43            346999999988889999999999999999996 899996431111    00    000110    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       234 --~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l  271 (281)
T 1mp8_A          234 --ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQL  271 (281)
T ss_dssp             --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence              01124456678899999999999999999999998864

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=7e-42  Score=299.95  Aligned_cols=230  Identities=16%  Similarity=0.109  Sum_probs=189.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-------HHH----HHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-------ALM----ATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-------~~~----~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.+|.|+|  |.||++..       ++|    .........+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        40 ~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  117 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSF--GRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLY  117 (350)
T ss_dssp             GGGEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             HHHCEEEEEeecCcC--cEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEE
Confidence            367888899999999  99998821       111    11122234456789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +||||+++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++...
T Consensus       118 lv~e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~  192 (350)
T 1rdq_E          118 MVMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK  192 (350)
T ss_dssp             EEEECCTTCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred             EEEcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceecc
Confidence            99999999999999986  35699999999999999999999999   99999999999999999999999999987543


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                              ++.|+|||++....++.++|+||||+++|+|++|..||....   .. .+.    ..+..+       ....
T Consensus       193 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~---~~-~~~----~~i~~~-------~~~~  257 (350)
T 1rdq_E          193 GRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ---PI-QIY----EKIVSG-------KVRF  257 (350)
T ss_dssp             SCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS---HH-HHH----HHHHHC-------CCCC
T ss_pred             CCcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCC---HH-HHH----HHHHcC-------CCCC
Confidence                    678999999998889999999999999999999999996431   11 110    111111       1124


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCC-----hhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPS-----MKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps-----~~evl~  272 (274)
                      +...+..+.+++.+||+.||++||+     ++|+++
T Consensus       258 p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          258 PSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             CTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             CCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence            4556788999999999999999998     888865

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=1.5e-42  Score=312.92  Aligned_cols=236  Identities=13%  Similarity=0.111  Sum_probs=186.6

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      ..++|.....+|.|+|  |.||++..      .++|.+...    ...+.+.+|+.++++++||||+++++++.+.+..+
T Consensus         9 ~~~~Y~i~~~LG~G~f--g~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~   86 (444)
T 3soa_A            9 FTEEYQLFEELGKGAF--SVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHY   86 (444)
T ss_dssp             HHHHEEEEEEEEEC----CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEE
T ss_pred             ccCCeEEEEEeccCCC--eEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEE
Confidence            3578888999999999  99998821      112222221    12345679999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc---CCCcEEEeccccce
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKISDFGLAK  166 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~---~~~~~kl~d~g~~~  166 (274)
                      +|||||.+|+|.+++..  ...+++..+..++.|++.||.|||+.   +|+||||||+||+++   .++.+||+|||++.
T Consensus        87 lv~E~~~gg~L~~~i~~--~~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~  161 (444)
T 3soa_A           87 LIFDLVTGGELFEDIVA--REYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAI  161 (444)
T ss_dssp             EEECCCBCCBHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCB
T ss_pred             EEEEeCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeE
Confidence            99999999999999986  45699999999999999999999999   999999999999998   46789999999986


Q ss_pred             ec-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          167 LL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       167 ~~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      ..           +++.|+|||.+....++.++||||+||++|+|++|..||....   .. .+.    .....+..   
T Consensus       162 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~---~~-~~~----~~i~~~~~---  230 (444)
T 3soa_A          162 EVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDED---QH-RLY----QQIKAGAY---  230 (444)
T ss_dssp             CCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSS---HH-HHH----HHHHHTCC---
T ss_pred             EecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCcc---HH-HHH----HHHHhCCC---
Confidence            43           2677999999998889999999999999999999999996431   11 111    11111111   


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      -.+.+.....++.+.+++.+||+.||++|||+.|+++.
T Consensus       231 ~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h  268 (444)
T 3soa_A          231 DFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKH  268 (444)
T ss_dssp             CCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            00111223456789999999999999999999999863

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.5e-41  Score=300.92  Aligned_cols=233  Identities=19%  Similarity=0.172  Sum_probs=188.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-------HHHH----HHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-------RALM----ATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~----~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.||+|+|  |.||++.       +++|    .........+.+.+|+.+|++++|||||++++++.+.+..+
T Consensus        14 ~~~y~i~~~LG~G~f--G~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~   91 (384)
T 4fr4_A           14 FDHFEILRAIGKGSF--GKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMF   91 (384)
T ss_dssp             GGGEEEEEEEECCTT--CCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             hHHeEEEEEEeeCCC--eEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            467888999999999  9999881       1111    11122234556789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      +||||+.+|+|.+++..  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++... 
T Consensus        92 lv~e~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~  166 (384)
T 4fr4_A           92 MVVDLLLGGDLRYHLQQ--NVHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLP  166 (384)
T ss_dssp             EEECCCTTEEHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeecc
Confidence            99999999999999985  45799999999999999999999999   9999999999999999999999999998754 


Q ss_pred             ---------CCCCcCCCccccc---CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          169 ---------SDKGCMAPECYKR---TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       169 ---------~~~~~~ape~~~~---~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                               +++.|+|||++..   ..++.++|+|||||++|+|++|..||........... ...    ...       
T Consensus       167 ~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~-~~~----~~~-------  234 (384)
T 4fr4_A          167 RETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEI-VHT----FET-------  234 (384)
T ss_dssp             TTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHH-HHH----HHH-------
T ss_pred             CCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHH-HHH----Hhh-------
Confidence                     2677999999864   3588999999999999999999999975422221111 110    000       


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCC-hhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPS-MKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-~~evl~  272 (274)
                      .....+...+..+.+++.+||+.||++||+ +.+|.+
T Consensus       235 ~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          235 TVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             cccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence            111345566788999999999999999998 777654

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1e-42  Score=303.95  Aligned_cols=237  Identities=18%  Similarity=0.174  Sum_probs=190.7

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEEe
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMR   84 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~   84 (274)
                      ..++|...+.+|.|+|  |.||+|..           .++|.....   ...+.+.+|+.+++++ +||||+++++++.+
T Consensus        43 ~~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  120 (344)
T 1rjb_A           43 PRENLEFGKVLGSGAF--GKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL  120 (344)
T ss_dssp             CGGGEEEEEEEEECSS--EEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CHHHceeeeeecCCCC--ceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee
Confidence            3567888899999999  99998842           223332221   3456678999999999 89999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCC---------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAE---------------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCD  143 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~---------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~d  143 (274)
                      .+..++||||+++|+|.+++.....                     ..+++..++.++.|++.||.|||+.   +++|+|
T Consensus       121 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~D  197 (344)
T 1rjb_A          121 SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRD  197 (344)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETT
T ss_pred             CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCC
Confidence            9999999999999999999986432                     2389999999999999999999999   999999


Q ss_pred             CCCCceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccc
Q 048314          144 IKPQNILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEI  209 (274)
Q Consensus       144 l~~~nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~  209 (274)
                      |||+||+++.++.++|+|||++....             ++.|+|||.+....++.++||||||+++|+|++ |..||..
T Consensus       198 ikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~  277 (344)
T 1rjb_A          198 LAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPG  277 (344)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred             CChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCccc
Confidence            99999999999999999999986432             346999999988889999999999999999998 9999975


Q ss_pred             cCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          210 DASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ......   +..    .....     .. ...+...+..+.+++.+||+.||.+|||+.++++.|
T Consensus       278 ~~~~~~---~~~----~~~~~-----~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  329 (344)
T 1rjb_A          278 IPVDAN---FYK----LIQNG-----FK-MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL  329 (344)
T ss_dssp             CCCSHH---HHH----HHHTT-----CC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCcHHH---HHH----HHhcC-----CC-CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence            422211   111    11110     11 123445578899999999999999999999998864

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=7e-43  Score=304.52  Aligned_cols=238  Identities=18%  Similarity=0.179  Sum_probs=191.9

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEE
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAM   83 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~   83 (274)
                      ....++|...+.+|.|+|  |.||++..           .++|......   ..+.+.+|+.++++++||||+++++++.
T Consensus        43 ~~~~~~~~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~  120 (343)
T 1luf_A           43 EYPRNNIEYVRDIGEGAF--GRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA  120 (343)
T ss_dssp             BCCGGGCEEEEEEEECSS--CEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             EecHHHCeeeeeeeecCC--eeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc
Confidence            334578888999999999  99999832           1222222211   1345779999999999999999999999


Q ss_pred             eCCcceEEEEeCCCCCHHHHHHhCCC----------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 048314           84 RGSKPSTEAALDLPWDLAYIIFCSAE----------------------RNPYWNQRVRIALDVAKGILYLHDECEPPILH  141 (274)
Q Consensus        84 ~~~~~~lv~e~~~~gsL~~~l~~~~~----------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h  141 (274)
                      +.+..++||||+++|+|.+++.....                      ..+++..++.++.|++.||.|||+.   +++|
T Consensus       121 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH  197 (343)
T 1luf_A          121 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVH  197 (343)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCC
T ss_pred             cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---Ceec
Confidence            99999999999999999999987421                      5699999999999999999999999   9999


Q ss_pred             CCCCCCceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCc
Q 048314          142 CDIKPQNILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENM  207 (274)
Q Consensus       142 ~dl~~~nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~  207 (274)
                      +||||+||+++.++.+||+|||++....             +..|+|||.+....++.++||||||+++|+|++ |..||
T Consensus       198 ~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~  277 (343)
T 1luf_A          198 RDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPY  277 (343)
T ss_dssp             SCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred             CCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcC
Confidence            9999999999999999999999985421             456999999988889999999999999999999 99999


Q ss_pred             cccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          208 EIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ....   .. .+.    ....++..      ...+...+..+.+++.+||+.||++|||+.++++.|
T Consensus       278 ~~~~---~~-~~~----~~~~~~~~------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L  330 (343)
T 1luf_A          278 YGMA---HE-EVI----YYVRDGNI------LACPENCPLELYNLMRLCWSKLPADRPSFCSIHRIL  330 (343)
T ss_dssp             TTSC---HH-HHH----HHHHTTCC------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCC---hH-HHH----HHHhCCCc------CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHH
Confidence            6431   11 111    11111111      124455667899999999999999999999998764

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.3e-42  Score=299.18  Aligned_cols=235  Identities=17%  Similarity=0.148  Sum_probs=186.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-C-------CCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-Y-------SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-~-------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      .+.|.....+|.|+|  |.||++..      .++|.+... .       ..+.+.+|+.+|++++||||+++++++.+.+
T Consensus        10 ~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   87 (326)
T 2y0a_A           10 DDYYDTGEELGSGQF--AVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT   87 (326)
T ss_dssp             HHHEEEEEEEECCSS--EEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             ccceEeceEEeeCCC--eEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC
Confidence            466888899999999  99999821      122222211 1       2345779999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC----cEEEecc
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW----TAKISDF  162 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~----~~kl~d~  162 (274)
                      ..++||||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++    .+||+||
T Consensus        88 ~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Df  162 (326)
T 2y0a_A           88 DVILILELVAGGELFDFLAE--KESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDF  162 (326)
T ss_dssp             EEEEEEECCCSCBHHHHHTT--SSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCC
T ss_pred             EEEEEEEcCCCCCHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEEC
Confidence            99999999999999999975  45799999999999999999999999   999999999999998877    7999999


Q ss_pred             ccceec----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          163 GLAKLL----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       163 g~~~~~----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      |++...          +++.|+|||++....++.++||||||+++|+|++|..||...   .....+..     ..... 
T Consensus       163 g~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~---~~~~~~~~-----~~~~~-  233 (326)
T 2y0a_A          163 GLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD---TKQETLAN-----VSAVN-  233 (326)
T ss_dssp             TTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS---SHHHHHHH-----HHHTC-
T ss_pred             CCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC---CHHHHHHH-----HHhcC-
Confidence            998754          267799999998888999999999999999999999999643   11111110     00000 


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                        ...+.......+..+.+++.+||+.||++|||+.|+++.
T Consensus       234 --~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  272 (326)
T 2y0a_A          234 --YEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  272 (326)
T ss_dssp             --CCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             --CCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence              000001112335678999999999999999999999863

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=2.5e-42  Score=297.94  Aligned_cols=246  Identities=14%  Similarity=0.105  Sum_probs=188.4

Q ss_pred             hHHHHhhhccccccCCCCCCCCcchhHHHH-----HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           16 SLCTKLRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        16 ~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      ......++|...+.+|.|+|  |.||++..     .++|.+...    ...+.+.+|++++++++||||+++++++.+.+
T Consensus        15 ~~q~l~~~y~~~~~lG~G~~--g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   92 (311)
T 3niz_A           15 YFQGLMEKYQKLEKVGEGTY--GVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSER   92 (311)
T ss_dssp             CEECSSCEEEEEEEEEECSS--CEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSS
T ss_pred             eecchHhhhHhhhhccCCCC--eEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCC
Confidence            33444688888999999999  99999832     112222211    11245679999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++||||++ |+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++.
T Consensus        93 ~~~lv~e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~  167 (311)
T 3niz_A           93 CLTLVFEFME-KDLKKVLDE-NKTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLAR  167 (311)
T ss_dssp             CEEEEEECCS-EEHHHHHHT-CTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEEEcCCC-CCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCce
Confidence            9999999998 589888876 445699999999999999999999999   99999999999999999999999999987


Q ss_pred             ecC-----------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh--
Q 048314          167 LLS-----------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL--  232 (274)
Q Consensus       167 ~~~-----------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--  232 (274)
                      ...           ++.|+|||.+.+ ..++.++||||+|+++|+|++|+.||...........+.    ........  
T Consensus       168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~----~~~~~~~~~~  243 (311)
T 3niz_A          168 AFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIF----SILGTPNPRE  243 (311)
T ss_dssp             ETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHH----HHHCCCCTTT
T ss_pred             ecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHH----HHHCCCChHH
Confidence            543           567999999876 468999999999999999999999997543222111111    10000000  


Q ss_pred             -------hh-------hhcCC---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 -------NK-------LVRGT---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 -------~~-------~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                             ..       .....   ......+.++.+++.+||+.||++|||+.|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          244 WPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             SGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                   00       00000   011233467899999999999999999999986

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=5.9e-43  Score=294.86  Aligned_cols=236  Identities=17%  Similarity=0.194  Sum_probs=186.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH----HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeC--CcceE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR----ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--SKPST   90 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~----~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~l   90 (274)
                      .++|.....+|.|+|  |.||+|..    .++|.....    ...+.+.+|+.++++++||||+++++++.+.  +..++
T Consensus         9 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   86 (271)
T 3kmu_A            9 FKQLNFLTKLNENHS--GELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTL   86 (271)
T ss_dssp             GGGCEEEEEEEEETT--EEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEE
T ss_pred             HHHhHHHHHhcCCCc--ceEEEEEECCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEe
Confidence            457778899999999  99999822    112222221    1124578999999999999999999999876  78899


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--cccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ||||+++|+|.+++.......+++..++.++.|++.||.|||+.   +  ++|+||||+||+++.++.++++||+++...
T Consensus        87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~  163 (271)
T 3kmu_A           87 ITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSF  163 (271)
T ss_dssp             EEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT
T ss_pred             eecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeee
Confidence            99999999999999875445699999999999999999999998   8  999999999999999999999988776432


Q ss_pred             ------CCCCcCCCcccccCCCc---cccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ------SDKGCMAPECYKRTPIS---VKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~---~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                            +++.|+|||.+....++   .++||||||+++|+|++|..||....   ......    ..     ..... ..
T Consensus       164 ~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~---~~~~~~----~~-----~~~~~-~~  230 (271)
T 3kmu_A          164 QSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLS---NMEIGM----KV-----ALEGL-RP  230 (271)
T ss_dssp             SCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSC---HHHHHH----HH-----HHSCC-CC
T ss_pred             cccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccC---hHHHHH----HH-----HhcCC-CC
Confidence                  36789999999865544   47999999999999999999996431   110000    00     00001 11


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+...+..+.+++..||+.||++|||+.|+++.|
T Consensus       231 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L  265 (271)
T 3kmu_A          231 TIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPIL  265 (271)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            24556678899999999999999999999999864

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-42  Score=301.98  Aligned_cols=233  Identities=16%  Similarity=0.181  Sum_probs=186.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH----------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR----------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      .++|...+.+|.|+|  |.||+|..          .++|.....   ...+.+.+|+.++++++||||+++++++.+.. 
T Consensus        14 ~~~y~~~~~lG~G~~--g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-   90 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAF--GTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-   90 (327)
T ss_dssp             TTTEEEEEEEEECSS--EEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-
T ss_pred             HhHceEEEEeeeCCC--eEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-
Confidence            467888999999999  99999821          122222221   23455779999999999999999999998765 


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++++||+.+|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++..
T Consensus        91 ~~~v~~~~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~  166 (327)
T 3lzb_A           91 VQLITQLMPFGCLLDYVRE-HKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             EEEEECCCSSCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC---
T ss_pred             ceEEEEecCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeE
Confidence            8899999999999999987 456799999999999999999999999   999999999999999999999999999875


Q ss_pred             cC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          168 LS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       168 ~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ..             +..|+|||.+....++.++||||||+++|+|++ |..||.......    +.    ......   
T Consensus       167 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~----~~----~~~~~~---  235 (327)
T 3lzb_A          167 LGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE----IS----SILEKG---  235 (327)
T ss_dssp             -------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG----HH----HHHHTT---
T ss_pred             ccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHH----HH----HHHHcC---
Confidence            42             346999999998899999999999999999999 999996441111    00    000010   


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                         .....+...+..+.+++.+||+.||.+|||+.|+++.|
T Consensus       236 ---~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  273 (327)
T 3lzb_A          236 ---ERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEF  273 (327)
T ss_dssp             ---CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ---CCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence               01124445667899999999999999999999999864

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=5.5e-43  Score=298.21  Aligned_cols=233  Identities=15%  Similarity=0.185  Sum_probs=185.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-------------HHHHHhcC--CCCCCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-------------ALMATVNS--PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-------------~~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      .++|...+.+|.|+|  |.||+|..             .++|....  ....+.+.+|+.++++++||||+++++++.+.
T Consensus         7 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   84 (289)
T 4fvq_A            7 NEDLIFNESLGQGTF--TKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCG   84 (289)
T ss_dssp             GGGEEEEEEEEEETT--EEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCT
T ss_pred             hhHeeeeeeeccCCC--ceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeC
Confidence            357778899999999  99999821             22222211  12345678999999999999999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc--------E
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT--------A  157 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~--------~  157 (274)
                      +..++||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.        +
T Consensus        85 ~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~  160 (289)
T 4fvq_A           85 DENILVQEFVKFGSLDTYLKK-NKNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFI  160 (289)
T ss_dssp             TCCEEEEECCTTCBHHHHHHH-TGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCccccccccee
Confidence            999999999999999999987 334599999999999999999999999   9999999999999988876        9


Q ss_pred             EEeccccceecC-------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh
Q 048314          158 KISDFGLAKLLS-------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN  229 (274)
Q Consensus       158 kl~d~g~~~~~~-------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                      +|+|||.+....       +..|+|||.+.. ..++.++||||||+++|+|++|..|+........   ...        
T Consensus       161 kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~---~~~--------  229 (289)
T 4fvq_A          161 KLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQR---KLQ--------  229 (289)
T ss_dssp             EECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH---HHH--------
T ss_pred             eeccCcccccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHH---HHH--------
Confidence            999999986543       678999999987 6789999999999999999996555532211110   000        


Q ss_pred             hhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          230 RELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                          ........+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       230 ----~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l  270 (289)
T 4fvq_A          230 ----FYEDRHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDL  270 (289)
T ss_dssp             ----HHHTTCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             ----HhhccCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence                00011123333456789999999999999999999999864

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=4.8e-42  Score=308.90  Aligned_cols=243  Identities=13%  Similarity=0.033  Sum_probs=192.6

Q ss_pred             hhhHHHHhhhccccccCCCCCCCCcchhHHH-------HHH----HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEE
Q 048314           14 RSSLCTKLRNFCRSSLNDRNSPRSKSVWSCM-------RAL----MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVA   82 (274)
Q Consensus        14 ~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~----~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~   82 (274)
                      ..++...+++|...+.||+|+|  |.||++.       +++    +.........+.+.+|+.++..++||||++++++|
T Consensus        66 ~~~~~~~~~~y~~~~~LG~G~f--G~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  143 (437)
T 4aw2_A           66 VKQMRLHREDFEILKVIGRGAF--GEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAF  143 (437)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hhcccCChhheEEEEEEEeCCC--EEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            3445556788999999999999  9999981       111    11122234566789999999999999999999999


Q ss_pred             EeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           83 MRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        83 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                      .+.+..++|||||++|+|.+++.. ....+++..++.++.|++.||.|||+.   +|+||||||+|||++.++.+||+||
T Consensus       144 ~~~~~~~lV~Ey~~gg~L~~~l~~-~~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DF  219 (437)
T 4aw2_A          144 QDDNNLYLVMDYYVGGDLLTLLSK-FEDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADF  219 (437)
T ss_dssp             ECSSEEEEEECCCTTCBHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred             eeCCEEEEEEecCCCCcHHHHHHH-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcch
Confidence            999999999999999999999986 346799999999999999999999999   9999999999999999999999999


Q ss_pred             ccceec------------CCCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH
Q 048314          163 GLAKLL------------SDKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK  225 (274)
Q Consensus       163 g~~~~~------------~~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~  225 (274)
                      |+++..            +++.|+|||++.     ...++.++|+|||||++|||++|+.||....   ......    .
T Consensus       220 Gla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~---~~~~~~----~  292 (437)
T 4aw2_A          220 GSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAES---LVETYG----K  292 (437)
T ss_dssp             TTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSS---HHHHHH----H
T ss_pred             hhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCC---hhHHHH----h
Confidence            998542            367899999987     4568999999999999999999999997431   111111    1


Q ss_pred             HHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCC--CCChhhHHh
Q 048314          226 CFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL--RPSMKCVVM  272 (274)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~evl~  272 (274)
                      ......  ....+ ......++++.+|+.+||..+|++  ||+++|+++
T Consensus       293 i~~~~~--~~~~p-~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~  338 (437)
T 4aw2_A          293 IMNHKE--RFQFP-TQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK  338 (437)
T ss_dssp             HHTHHH--HCCCC-SSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred             hhhccc--cccCC-cccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence            100000  00001 111235678899999999988888  999999976

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=7.7e-42  Score=296.14  Aligned_cols=233  Identities=15%  Similarity=0.191  Sum_probs=182.3

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC----
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS----   86 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----   86 (274)
                      ..++|...+.+|.|+|  |.||++..      .++|.+...   ...+.+.+|+.+|++++||||+++++++.+.+    
T Consensus         4 ~~~~y~~~~~lG~G~~--g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~   81 (332)
T 3qd2_B            4 YLTDFEPIQCMGRGGF--GVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKW   81 (332)
T ss_dssp             HHHHEEEEEEEECC-C--SEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHH
T ss_pred             hhhcCceeeEecCCCC--eEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchh
Confidence            3578888999999999  99998821      223333221   22355789999999999999999999986643    


Q ss_pred             -----------------------------------------------------cceEEEEeCCCCCHHHHHHhCCC-CCC
Q 048314           87 -----------------------------------------------------KPSTEAALDLPWDLAYIIFCSAE-RNP  112 (274)
Q Consensus        87 -----------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~~-~~l  112 (274)
                                                                           ..++|||||++|+|.+++..... ...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~  161 (332)
T 3qd2_B           82 QEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDR  161 (332)
T ss_dssp             HHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGS
T ss_pred             hhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccch
Confidence                                                                 27999999999999999987432 236


Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-----------------------C
Q 048314          113 YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-----------------------S  169 (274)
Q Consensus       113 ~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-----------------------~  169 (274)
                      ++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...                       +
T Consensus       162 ~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~g  238 (332)
T 3qd2_B          162 EHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVG  238 (332)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-
T ss_pred             hhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCC
Confidence            7788999999999999999999   9999999999999999999999999998653                       3


Q ss_pred             CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHH
Q 048314          170 DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENL  249 (274)
Q Consensus       170 ~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (274)
                      ++.|+|||.+....++.++||||||+++|+|++|..|+...      ....    ......      ............+
T Consensus       239 t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~------~~~~----~~~~~~------~~~~~~~~~~~~~  302 (332)
T 3qd2_B          239 TKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER------VRII----TDVRNL------KFPLLFTQKYPQE  302 (332)
T ss_dssp             CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH------HHHH----HHHHTT------CCCHHHHHHCHHH
T ss_pred             CcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH------HHHH----HHhhcc------CCCcccccCChhH
Confidence            56799999999889999999999999999999987765311      0000    000000      0001223445678


Q ss_pred             HHHHHHhhccCCCCCCChhhHHhh
Q 048314          250 VKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       250 ~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .+++.+||+.||++|||+.|+++.
T Consensus       303 ~~li~~~l~~~p~~Rps~~~~l~~  326 (332)
T 3qd2_B          303 HMMVQDMLSPSPTERPEATDIIEN  326 (332)
T ss_dssp             HHHHHHHHCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHccCCCCcCCCHHHHhhc
Confidence            999999999999999999999873

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.6e-42  Score=291.88  Aligned_cols=234  Identities=15%  Similarity=0.191  Sum_probs=189.5

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----HHHHHhcC-CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNS-PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      .++|.....+|.|+|  |.||++..     .++|.... ....+.+.+|+.++++++||||+++++++.+.+..++||||
T Consensus         7 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (267)
T 3t9t_A            7 PSELTFVQEIGSGQF--GLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEF   84 (267)
T ss_dssp             GGGEEEEEEEEEETT--EEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECC
T ss_pred             hhheeeeeEecCCCc--eeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeC
Confidence            356777889999999  99999822     12222222 22345678999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      +++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+....     
T Consensus        85 ~~~~~L~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~  160 (267)
T 3t9t_A           85 MEHGCLSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT  160 (267)
T ss_dssp             CTTCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHH
T ss_pred             CCCCcHHHHHhh-CcccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEccccccccccccccc
Confidence            999999999986 345689999999999999999999999   99999999999999999999999999987542     


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                             +..|+|||.+....++.++|+||||+++|+|++ |..||....   .. ...    ......     . ....
T Consensus       161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~---~~-~~~----~~i~~~-----~-~~~~  226 (267)
T 3t9t_A          161 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS---NS-EVV----EDISTG-----F-RLYK  226 (267)
T ss_dssp             STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC---HH-HHH----HHHHTT-----C-CCCC
T ss_pred             ccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCC---HH-HHH----HHHhcC-----C-cCCC
Confidence                   346999999988889999999999999999999 899986431   11 110    001110     0 1123


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...+..+.+++.+||+.||++|||+.++++.|
T Consensus       227 ~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L  259 (267)
T 3t9t_A          227 PRLASTHVYQIMNHCWRERPEDRPAFSRLLRQL  259 (267)
T ss_dssp             CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CccCcHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            344567899999999999999999999999865

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.8e-42  Score=304.23  Aligned_cols=255  Identities=17%  Similarity=0.112  Sum_probs=194.9

Q ss_pred             cchhhhhhhHHHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcC-CCCCCcHHHHHHHHhcCC-----CCcc
Q 048314            8 TSAWIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS-PYSPSRPLTLTSIVSRVS-----WTTD   75 (274)
Q Consensus         8 ~~~~~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~-~~~~~~~~~e~~~l~~l~-----h~ni   75 (274)
                      ...-+++.+.....++|...+.+|.|+|  |.||++..      .++|.+.. ....+.+..|+.++++++     ||||
T Consensus        21 ~~~~~~~~~g~~~~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~i   98 (360)
T 3llt_A           21 EIVHFSWKKGMLLNNAFLVIRKMGDGTF--GRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNI   98 (360)
T ss_dssp             GGGSCCCCTTCEETTTEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGB
T ss_pred             cceeeeeecceEecCEEEEEEEEcccCC--eEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCe
Confidence            3444666777777889999999999999  99998822      12222221 122344567999999987     9999


Q ss_pred             ceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC--
Q 048314           76 IEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE--  153 (274)
Q Consensus        76 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~--  153 (274)
                      +++++++...+..++||||+ +++|.+++.......+++..++.++.|++.||.|||+.   +++||||||+||+++.  
T Consensus        99 v~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~  174 (360)
T 3llt_A           99 VKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPY  174 (360)
T ss_dssp             CCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTT
T ss_pred             ecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEcccc
Confidence            99999999999999999999 89999999986656799999999999999999999999   9999999999999975  


Q ss_pred             -----------------------CCcEEEeccccceecC--------CCCcCCCcccccCCCccccceeehhHhHHHHhh
Q 048314          154 -----------------------FWTAKISDFGLAKLLS--------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC  202 (274)
Q Consensus       154 -----------------------~~~~kl~d~g~~~~~~--------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~  202 (274)
                                             ++.+||+|||++....        ++.|+|||++....++.++|||||||++|+|++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  254 (360)
T 3llt_A          175 FEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYT  254 (360)
T ss_dssp             CCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             ccccccchhcccccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHH
Confidence                                   7889999999997543        667999999999999999999999999999999


Q ss_pred             cCCCccccCCChhhHHHHHHHHHHHh-----------hhhhhhhhcCC--------c----------------cCHHHHH
Q 048314          203 CWENMEIDASKPEEIILTNWVYKCFI-----------NRELNKLVRGT--------E----------------VDKKNLE  247 (274)
Q Consensus       203 g~~p~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--------~----------------~~~~~~~  247 (274)
                      |+.||.....   .. ....+.....           ...........        .                .+....+
T Consensus       255 g~~pf~~~~~---~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  330 (360)
T 3llt_A          255 GSLLFRTHEH---ME-HLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHE  330 (360)
T ss_dssp             SSCSCCCSSH---HH-HHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCH
T ss_pred             CCCCCCCCcH---HH-HHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHH
Confidence            9999974311   11 1111111000           00000000000        0                0001126


Q ss_pred             HHHHHHHHhhccCCCCCCChhhHHh
Q 048314          248 NLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       248 ~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+.+++.+||+.||++|||++|+++
T Consensus       331 ~l~~li~~~L~~dP~~Rpta~elL~  355 (360)
T 3llt_A          331 LFCDFLYSILQIDPTLRPSPAELLK  355 (360)
T ss_dssp             HHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHHHhcCChhhCCCHHHHhc
Confidence            7889999999999999999999986

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.1e-42  Score=297.49  Aligned_cols=226  Identities=18%  Similarity=0.145  Sum_probs=187.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----------CCCCcHHHHHHHHhcCCCCccceEeEEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----------YSPSRPLTLTSIVSRVSWTTDIEVSSVAM   83 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----------~~~~~~~~e~~~l~~l~h~niv~l~~~~~   83 (274)
                      ..++|...+.||.|+|  |.||++..      .++|.+...          ...+.+.+|+.++++++||||+++++++.
T Consensus        22 ~~~~y~~~~~lG~G~~--g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~   99 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAF--GFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFE   99 (335)
T ss_dssp             HHHHEEEEEECSSSSS--CSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             cccceEEEeEEEecCC--EEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEe
Confidence            3568888999999999  99999921      122222221          13446779999999999999999999999


Q ss_pred             eCCcceEEEEeCCCC-CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           84 RGSKPSTEAALDLPW-DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        84 ~~~~~~lv~e~~~~g-sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                      +.+..++||||+.+| +|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+||
T Consensus       100 ~~~~~~lv~e~~~~g~~l~~~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Df  174 (335)
T 3dls_A          100 NQGFFQLVMEKHGSGLDLFAFIDR--HPRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDF  174 (335)
T ss_dssp             CSSEEEEEEECCTTSCBHHHHHHT--CCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCC
T ss_pred             eCCEEEEEEEeCCCCccHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeec
Confidence            999999999999776 99999985  45799999999999999999999999   9999999999999999999999999


Q ss_pred             ccceec----------CCCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhh
Q 048314          163 GLAKLL----------SDKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRE  231 (274)
Q Consensus       163 g~~~~~----------~~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  231 (274)
                      |++...          +++.|+|||.+....+ +.++||||||+++|+|++|..||....                  ..
T Consensus       175 g~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~------------------~~  236 (335)
T 3dls_A          175 GSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELE------------------ET  236 (335)
T ss_dssp             TTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGG------------------GG
T ss_pred             ccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHH------------------HH
Confidence            998754          3678999999988776 789999999999999999999996320                  00


Q ss_pred             hhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          232 LNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ....   ...+...+..+.+++.+||+.||++|||+.|+++.
T Consensus       237 ~~~~---~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          237 VEAA---IHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             TTTC---CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             Hhhc---cCCCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0011   12233356789999999999999999999999863

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.4e-42  Score=303.15  Aligned_cols=231  Identities=18%  Similarity=0.183  Sum_probs=187.2

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH-------HHHH---H-HhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM-------RALM---A-TVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~---~-~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~   87 (274)
                      ..++|...+.||+|+|  |.||++.       +++|   + ........+.+.+|..+++.+ +||||+++++++.+.+.
T Consensus        21 ~~~~y~~~~~lG~G~f--g~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~   98 (353)
T 3txo_A           21 GIDNFEFIRVLGKGSF--GKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDR   98 (353)
T ss_dssp             --CCEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred             chhheEEEEEEeeCCC--EEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCE
Confidence            3478888999999999  9999881       1111   1 111223445577899999988 69999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus        99 ~~lv~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~  173 (353)
T 3txo_A           99 LFFVMEFVNGGDLMFHIQK--SRRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKE  173 (353)
T ss_dssp             EEEEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             EEEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceee
Confidence            9999999999999999986  35799999999999999999999999   999999999999999999999999999874


Q ss_pred             c-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          168 L-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       168 ~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      .           +++.|+|||++....++.++|+|||||++|||++|..||....   .. .+.    ....+       
T Consensus       174 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~---~~-~~~----~~i~~-------  238 (353)
T 3txo_A          174 GICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAEN---ED-DLF----EAILN-------  238 (353)
T ss_dssp             SCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSS---HH-HHH----HHHHH-------
T ss_pred             cccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCC---HH-HHH----HHHHc-------
Confidence            2           3678999999988889999999999999999999999996431   11 111    11111       


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCCh------hhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSM------KCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~------~evl~  272 (274)
                      .....+...+..+.+++.+||+.||++||++      .|+++
T Consensus       239 ~~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          239 DEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence            1112444566789999999999999999998      66764

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=2e-42  Score=304.73  Aligned_cols=236  Identities=15%  Similarity=0.129  Sum_probs=187.6

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCC----CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPY----SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      ...++|.....+|.|+|  |.||++..      .++|.+....    ..+.+.+|+.++++++||||+++++++.+.+..
T Consensus        26 ~~~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~  103 (362)
T 2bdw_A           26 KFSDNYDVKEELGKGAF--SVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFH  103 (362)
T ss_dssp             HHHHHEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             CcccCeEEeeEEecCCC--eEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEE
Confidence            34578888999999999  99999821      1222222221    124567899999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC---CcEEEeccccc
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF---WTAKISDFGLA  165 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~---~~~kl~d~g~~  165 (274)
                      ++||||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.+   +.+||+|||++
T Consensus       104 ~lv~e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a  178 (362)
T 2bdw_A          104 YLVFDLVTGGELFEDIVA--REFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLA  178 (362)
T ss_dssp             EEEECCCCSCBHHHHHTT--CSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             EEEEecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcc
Confidence            999999999999999975  45799999999999999999999999   99999999999999764   45999999998


Q ss_pred             eec----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          166 KLL----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       166 ~~~----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      ...          +++.|+|||++....++.++|||||||++|+|++|..||....   . ..+.    .....+..   
T Consensus       179 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~---~-~~~~----~~i~~~~~---  247 (362)
T 2bdw_A          179 IEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED---Q-HRLY----AQIKAGAY---  247 (362)
T ss_dssp             BCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS---H-HHHH----HHHHHTCC---
T ss_pred             eEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC---H-HHHH----HHHHhCCC---
Confidence            643          3678999999998889999999999999999999999996431   1 1111    11111110   


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+.......+..+.+++.+||+.||++|||+.|+++
T Consensus       248 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  284 (362)
T 2bdw_A          248 DYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK  284 (362)
T ss_dssp             CCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             CCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            0011112344678999999999999999999999976

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=4.8e-42  Score=306.62  Aligned_cols=240  Identities=15%  Similarity=0.079  Sum_probs=191.5

Q ss_pred             hhHHHHhhhccccccCCCCCCCCcchhHHH-------HHH----HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEE
Q 048314           15 SSLCTKLRNFCRSSLNDRNSPRSKSVWSCM-------RAL----MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAM   83 (274)
Q Consensus        15 ~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~----~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~   83 (274)
                      .++....++|...+.||+|+|  |.||++.       +++    +.........+.+.+|+.+++.++||||+++++++.
T Consensus        62 ~~~~~~~~~y~~~~~LG~G~f--G~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~  139 (410)
T 3v8s_A           62 RDLRMKAEDYEVVKVIGRGAF--GEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQ  139 (410)
T ss_dssp             HHHSCCGGGEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             HhcccCccccEEEEEEEcCCC--EEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEE
Confidence            445556678999999999999  9999881       111    112223345677889999999999999999999999


Q ss_pred             eCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccc
Q 048314           84 RGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG  163 (274)
Q Consensus        84 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g  163 (274)
                      +.+..++|||||++|+|.+++..   ..+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||
T Consensus       140 ~~~~~~lV~E~~~gg~L~~~l~~---~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG  213 (410)
T 3v8s_A          140 DDRYLYMVMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFG  213 (410)
T ss_dssp             CSSEEEEEECCCTTEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             ECCEEEEEEeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccc
Confidence            99999999999999999999975   4689999999999999999999999   99999999999999999999999999


Q ss_pred             cceec------------CCCCcCCCcccccCC----CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH
Q 048314          164 LAKLL------------SDKGCMAPECYKRTP----ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF  227 (274)
Q Consensus       164 ~~~~~------------~~~~~~ape~~~~~~----~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~  227 (274)
                      +++..            +++.|+|||++....    ++.++|+|||||++|||++|..||....   ......    . +
T Consensus       214 ~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~---~~~~~~----~-i  285 (410)
T 3v8s_A          214 TCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADS---LVGTYS----K-I  285 (410)
T ss_dssp             TCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSS---HHHHHH----H-H
T ss_pred             eeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCC---hhhHHH----H-H
Confidence            98543            367899999997654    7899999999999999999999997431   111111    1 1


Q ss_pred             hhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCC--CCChhhHHhh
Q 048314          228 INRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL--RPSMKCVVMM  273 (274)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~--Rps~~evl~~  273 (274)
                      .+... ....  +.+...+..+.+|+.+||+.+|.+  ||++.||++.
T Consensus       286 ~~~~~-~~~~--p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H  330 (410)
T 3v8s_A          286 MNHKN-SLTF--PDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH  330 (410)
T ss_dssp             HTHHH-HCCC--CTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred             Hhccc-cccC--CCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence            11100 0000  112235678999999999999988  9999999863

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=3e-42  Score=299.12  Aligned_cols=234  Identities=20%  Similarity=0.189  Sum_probs=186.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|...+.+|+|+|  |.||++..      .++|.+...   ...+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus         6 ~~~y~i~~~lG~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv   83 (323)
T 3tki_A            6 VEDWDLVQTLGEGAY--GEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   83 (323)
T ss_dssp             TTCEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhceeeeEEecCCC--EEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            467888999999999  99999821      122222221   2346788999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...   
T Consensus        84 ~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  158 (323)
T 3tki_A           84 LEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYN  158 (323)
T ss_dssp             EECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred             EEcCCCCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccC
Confidence            999999999999974  45699999999999999999999999   9999999999999999999999999998643   


Q ss_pred             ----------CCCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 ----------SDKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 ----------~~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                                +++.|+|||.+....+ +.++||||||+++|+|++|..||.........  ...+.     ..  .... 
T Consensus       159 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~--~~~~~-----~~--~~~~-  228 (323)
T 3tki_A          159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE--YSDWK-----EK--KTYL-  228 (323)
T ss_dssp             TEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHH--HHHHH-----TT--CTTS-
T ss_pred             CcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHH--HHHHh-----cc--cccC-
Confidence                      3667999999987765 78999999999999999999999754222111  11110     00  0000 


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                        ......+..+.+++.+||+.||++|||+.|+++.
T Consensus       229 --~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h  262 (323)
T 3tki_A          229 --NPWKKIDSAPLALLHKILVENPSARITIPDIKKD  262 (323)
T ss_dssp             --TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             --CccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence              1123445778999999999999999999999863

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-42  Score=296.24  Aligned_cols=238  Identities=20%  Similarity=0.261  Sum_probs=184.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH----HHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR----ALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDL   96 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~----~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~   96 (274)
                      .++|...+.+|+|+|  |.||++..    .++|........+.+.+|+.++++++||||+++++++.  +..++||||++
T Consensus         7 ~~~~~~~~~lg~G~~--g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~   82 (307)
T 2eva_A            7 YKEIEVEEVVGRGAF--GVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAE   82 (307)
T ss_dssp             GGGEEEEEEEECCSS--SEEEEEEETTEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCT
T ss_pred             HhHeeeeeEeecCCC--ceEEEEEECCeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCC
Confidence            356777899999999  99999821    12223333334456789999999999999999999876  44899999999


Q ss_pred             CCCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc-EEEeccccceec------
Q 048314           97 PWDLAYIIFCSAE-RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-AKISDFGLAKLL------  168 (274)
Q Consensus        97 ~gsL~~~l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~-~kl~d~g~~~~~------  168 (274)
                      +|+|.+++..... ..+++..++.++.|++.||.|||+....+++||||||+||+++.++. +||+|||++...      
T Consensus        83 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~  162 (307)
T 2eva_A           83 GGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTN  162 (307)
T ss_dssp             TCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC----------
T ss_pred             CCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccccccc
Confidence            9999999986332 24789999999999999999999921129999999999999988876 799999998643      


Q ss_pred             --CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHH
Q 048314          169 --SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNL  246 (274)
Q Consensus       169 --~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (274)
                        +++.|+|||.+....++.++||||||+++|+|++|+.||..........     .+.. ...      .....+...+
T Consensus       163 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~-----~~~~-~~~------~~~~~~~~~~  230 (307)
T 2eva_A          163 NKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI-----MWAV-HNG------TRPPLIKNLP  230 (307)
T ss_dssp             --CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHH-----HHHH-HTT------CCCCCBTTCC
T ss_pred             CCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHH-----HHHH-hcC------CCCCcccccC
Confidence              3678999999998889999999999999999999999997542221111     0000 010      0112334456


Q ss_pred             HHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          247 ENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       247 ~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+.+++.+||+.||++|||+.++++.|
T Consensus       231 ~~l~~li~~~l~~dp~~Rps~~ell~~L  258 (307)
T 2eva_A          231 KPIESLMTRCWSKDPSQRPSMEEIVKIM  258 (307)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence            7899999999999999999999998864

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.8e-42  Score=296.46  Aligned_cols=242  Identities=18%  Similarity=0.169  Sum_probs=181.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH----HHHHHhcCCCCCCcHHHHHHHHhc--CCCCccceEeEEEEeC----CcceE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR----ALMATVNSPYSPSRPLTLTSIVSR--VSWTTDIEVSSVAMRG----SKPST   90 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~----~~~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~----~~~~l   90 (274)
                      .++|...+.+|.|+|  |.||+|..    .++|... ....+.+..|.+++..  ++||||+++++++.+.    ...++
T Consensus         7 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~vavK~~~-~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~l   83 (301)
T 3q4u_A            7 ARDITLLECVGKGRY--GEVWRGSWQGENVAVKIFS-SRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL   83 (301)
T ss_dssp             GGGCEEEEEEEECSS--EEEEEEEETTEEEEEEEEC-GGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             cCcEEEEEeeccCCC--cEEEEEEECCEEEEEEEec-cccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEE
Confidence            467888999999999  99999821    1122221 1233445567777666  7899999999997653    45799


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHh--------cCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLH--------DECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh--------~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                      ||||+++|+|.+++..   ..+++..++.++.|++.||.|||        +.   +++||||||+||+++.++.+||+||
T Consensus        84 v~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~Df  157 (301)
T 3q4u_A           84 ITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIADL  157 (301)
T ss_dssp             EECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEECCC
T ss_pred             ehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEeeC
Confidence            9999999999999954   57999999999999999999999        87   9999999999999999999999999


Q ss_pred             cccee---------------cCCCCcCCCcccccC------CCccccceeehhHhHHHHhhc----------CCCccccC
Q 048314          163 GLAKL---------------LSDKGCMAPECYKRT------PISVKADVYGYGIVLLETICC----------WENMEIDA  211 (274)
Q Consensus       163 g~~~~---------------~~~~~~~ape~~~~~------~~~~~~Di~s~G~~l~el~~g----------~~p~~~~~  211 (274)
                      |++..               .+++.|+|||.+...      .++.++||||||+++|||++|          ..||....
T Consensus       158 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~  237 (301)
T 3q4u_A          158 GLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVV  237 (301)
T ss_dssp             TTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred             CCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccC
Confidence            99853               236789999998876      455799999999999999999          77775432


Q ss_pred             CChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          212 SKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ........   ...................+...+..+.+++.+||+.||++|||+.||++.|
T Consensus       238 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L  297 (301)
T 3q4u_A          238 PNDPSFED---MRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTL  297 (301)
T ss_dssp             CSSCCHHH---HHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHH
T ss_pred             CCCcchhh---hhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHH
Confidence            11111100   0000000000000111123346778999999999999999999999999875

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=5.7e-42  Score=289.30  Aligned_cols=233  Identities=21%  Similarity=0.250  Sum_probs=182.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH----HHHHHhcC------CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR----ALMATVNS------PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~----~~~~~~~~------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      .++|...+.+|.|+|  |.||++..    .++|....      ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus         6 ~~~~~~~~~lg~G~~--g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (271)
T 3dtc_A            6 FAELTLEEIIGIGGF--GKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCL   83 (271)
T ss_dssp             TTSEEEEEEEEEETT--EEEEEEEETTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEE
T ss_pred             hhheeeeeeeccCCC--eEEEEEEEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEE
Confidence            467888899999999  99999821    11111111      1123457799999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC---cccCCCCCCceEEcC--------CCcEEE
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP---ILHCDIKPQNILMDE--------FWTAKI  159 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~---i~h~dl~~~nil~~~--------~~~~kl  159 (274)
                      ||||+++++|.+++..   ..+++..++.++.|++.||.|||+.   +   ++|+||||+||+++.        ++.++|
T Consensus        84 v~e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~---~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl  157 (271)
T 3dtc_A           84 VMEFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLHDE---AIVPIIHRDLKSSNILILQKVENGDLSNKILKI  157 (271)
T ss_dssp             EEECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHS---SSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEE
T ss_pred             EEEcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CCCceeecCCchHHEEEecccccccccCcceEE
Confidence            9999999999999953   5799999999999999999999999   7   999999999999985        678999


Q ss_pred             eccccceec---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh
Q 048314          160 SDFGLAKLL---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR  230 (274)
Q Consensus       160 ~d~g~~~~~---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      +|||.+...         +++.|+|||.+....++.++||||||+++|+|++|..||....   ... ...   .. .  
T Consensus       158 ~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~---~~~-~~~---~~-~--  227 (271)
T 3dtc_A          158 TDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGID---GLA-VAY---GV-A--  227 (271)
T ss_dssp             CCCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSC---HHH-HHH---HH-H--
T ss_pred             ccCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC---HHH-HHH---hh-h--
Confidence            999998643         3678999999988889999999999999999999999996431   110 000   00 0  


Q ss_pred             hhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          231 ELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       ...  .....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       228 -~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L  268 (271)
T 3dtc_A          228 -MNK--LALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQL  268 (271)
T ss_dssp             -TSC--CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -cCC--CCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHH
Confidence             000  01124556678899999999999999999999999875

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=7e-43  Score=322.33  Aligned_cols=235  Identities=19%  Similarity=0.231  Sum_probs=189.8

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH-----HHHHHhcC-CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNS-PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ..++|.....||.|+|  |.||+|..     .++|.+.. ....+.|.+|+.+|++++||||+++++++.+ +..++|||
T Consensus       265 ~~~~~~~~~~lG~G~f--g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e  341 (535)
T 2h8h_A          265 PRESLRLEVKLGQGCF--GEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE  341 (535)
T ss_dssp             CGGGEEEEEEEEECSS--EEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred             chhhhhhheecccCCC--eEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeee
Confidence            3456777888999999  99999821     22232222 2344678999999999999999999999876 67899999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+.+|+|.+++.......+++..++.++.|++.||.|||++   +++||||||+|||++.++.+||+|||+++...    
T Consensus       342 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  418 (535)
T 2h8h_A          342 YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY  418 (535)
T ss_dssp             CCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHH
T ss_pred             hhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCCce
Confidence            99999999999754345699999999999999999999999   99999999999999999999999999987543    


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                              +..|+|||.+....++.++||||||+++|||++ |..||....   .. .+.    .....+     . ...
T Consensus       419 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~---~~-~~~----~~i~~~-----~-~~~  484 (535)
T 2h8h_A          419 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV---NR-EVL----DQVERG-----Y-RMP  484 (535)
T ss_dssp             HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCC---HH-HHH----HHHHTT-----C-CCC
T ss_pred             ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC---HH-HHH----HHHHcC-----C-CCC
Confidence                    346999999998899999999999999999999 899996431   11 111    111111     0 112


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+..++..+.++|.+||+.||++|||+.+|++.|
T Consensus       485 ~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L  518 (535)
T 2h8h_A          485 CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFL  518 (535)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            4456678899999999999999999999998764

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=1.4e-42  Score=300.56  Aligned_cols=241  Identities=18%  Similarity=0.246  Sum_probs=183.5

Q ss_pred             hhHHHHhhhccccccCCCCCCCCcchhHHHH---------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEE
Q 048314           15 SSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSV   81 (274)
Q Consensus        15 ~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~   81 (274)
                      .++....++|...+.+|.|+|  |.||+|..         .++|....    ....+.+.+|+.++++++||||++++++
T Consensus        16 ~~~~i~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~   93 (323)
T 3qup_A           16 EDVLIPEQQFTLGRMLGKGEF--GSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGV   93 (323)
T ss_dssp             CTTBCC---CEEEEEEEEETT--EEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEE
T ss_pred             hhcccChhHeEEeceecccCC--eEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhce
Confidence            344445678888999999999  99999821         12222221    1223557899999999999999999999


Q ss_pred             EEeCCcc------eEEEEeCCCCCHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 048314           82 AMRGSKP------STEAALDLPWDLAYIIFCSA----ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM  151 (274)
Q Consensus        82 ~~~~~~~------~lv~e~~~~gsL~~~l~~~~----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~  151 (274)
                      +.+....      ++||||+.+|+|.+++....    ...+++..++.++.|++.||.|||+.   +++||||||+||++
T Consensus        94 ~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli  170 (323)
T 3qup_A           94 SLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCML  170 (323)
T ss_dssp             EECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred             eeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEE
Confidence            9876654      99999999999999997532    12599999999999999999999999   99999999999999


Q ss_pred             cCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhH
Q 048314          152 DEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEI  217 (274)
Q Consensus       152 ~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~  217 (274)
                      +.++.+||+|||++....             ++.|+|||.+....++.++||||||+++|+|++ |..||.......   
T Consensus       171 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~---  247 (323)
T 3qup_A          171 AEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE---  247 (323)
T ss_dssp             CTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG---
T ss_pred             cCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH---
Confidence            999999999999986532             346999999998889999999999999999999 899986432111   


Q ss_pred             HHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          218 ILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       ..    .......      ....+...+..+.+++.+||+.||++|||+.++++.|
T Consensus       248 -~~----~~~~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  293 (323)
T 3qup_A          248 -IY----NYLIGGN------RLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMEL  293 (323)
T ss_dssp             -HH----HHHHTTC------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             -HH----HHHhcCC------CCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence             00    0000000      1124455667899999999999999999999988754

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=5.6e-42  Score=293.46  Aligned_cols=235  Identities=22%  Similarity=0.190  Sum_probs=185.9

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCC-CC----CCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP-YS----PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~-~~----~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.+|.|+|  |.||++.      ..++|..... ..    .+.+.+|+.++++++||||+++++++.+.+..++
T Consensus        11 ~~y~i~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l   88 (294)
T 4eqm_A           11 ERYKIVDKLGGGGM--STVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYL   88 (294)
T ss_dssp             TTEEEEEEEEEETT--EEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEE
T ss_pred             ccEEEEEEEccCCC--EEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEE
Confidence            56788899999999  9999882      1122222111 11    2456799999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      ||||+++++|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...  
T Consensus        89 v~e~~~g~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  163 (294)
T 4eqm_A           89 VMEYIEGPTLSEYIES--HGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSE  163 (294)
T ss_dssp             EEECCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC--
T ss_pred             EEeCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCcccccc
Confidence            9999999999999986  35799999999999999999999999   9999999999999999999999999998642  


Q ss_pred             ----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          169 ----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       169 ----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                +++.|+|||.+....++.++||||||+++|+|++|..||....   .....    ...... ......  
T Consensus       164 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~---~~~~~----~~~~~~-~~~~~~--  233 (294)
T 4eqm_A          164 TSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGET---AVSIA----IKHIQD-SVPNVT--  233 (294)
T ss_dssp             -----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSC---HHHHH----HHHHSS-CCCCHH--
T ss_pred             ccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC---hHHHH----HHHhhc-cCCCcc--
Confidence                      3678999999998889999999999999999999999996431   11000    000000 000000  


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCC-ChhhHHhh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRP-SMKCVVMM  273 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rp-s~~evl~~  273 (274)
                      ...+...+..+.+++.+||+.||++|| ++.++.+.
T Consensus       234 ~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~  269 (294)
T 4eqm_A          234 TDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDD  269 (294)
T ss_dssp             HHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHH
T ss_pred             hhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHH
Confidence            012334567899999999999999999 77777654

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=5.7e-42  Score=290.89  Aligned_cols=229  Identities=15%  Similarity=0.173  Sum_probs=187.5

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHHH------HHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEe---------
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMRA------LMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR---------   84 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~~------~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~---------   84 (274)
                      ..++|...+.+|.|+|  |.||++...      ++|...  ...+.+.+|++++++++||||+++++++..         
T Consensus         9 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B            9 FGMDFKEIELIGSGGF--GQVFKAKHRIDGKTYVIKRVK--YNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             HHHHEEEEEEEECSSS--CCEEEEEETTTCCEEEEEEEE--CCSGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred             hccccceeeeeccCCc--eEEEEEEEcCCCeEEEEEEec--cccHHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence            3567888999999999  999998321      122222  234678899999999999999999998854         


Q ss_pred             -------CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcE
Q 048314           85 -------GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA  157 (274)
Q Consensus        85 -------~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~  157 (274)
                             ....++||||+++|+|.+++.......+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.+
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~  161 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQV  161 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEE
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCCE
Confidence                   34579999999999999999875556799999999999999999999999   99999999999999999999


Q ss_pred             EEeccccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH
Q 048314          158 KISDFGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF  227 (274)
Q Consensus       158 kl~d~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~  227 (274)
                      +|+|||++....          ++.|+|||.+....++.++||||||+++|+|++|..|+...      .   .. ....
T Consensus       162 kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~------~---~~-~~~~  231 (284)
T 2a19_B          162 KIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET------S---KF-FTDL  231 (284)
T ss_dssp             EECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH------H---HH-HHHH
T ss_pred             EECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH------H---HH-HHHh
Confidence            999999986543          56799999999888999999999999999999999887421      0   00 0001


Q ss_pred             hhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          228 INRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..         ...+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       232 ~~---------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l  269 (284)
T 2a19_B          232 RD---------GIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTL  269 (284)
T ss_dssp             HT---------TCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             hc---------ccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            11         112333456789999999999999999999998864

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=7.4e-43  Score=296.11  Aligned_cols=237  Identities=18%  Similarity=0.190  Sum_probs=187.5

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHH----HHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeC-CcceEEEE
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCM----RALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG-SKPSTEAA   93 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~----~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-~~~~lv~e   93 (274)
                      ...++|.....+|.|++  |.||++.    ..++|........+.+.+|+.++++++||||+++++++.+. +..++|||
T Consensus        18 ~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e   95 (278)
T 1byg_A           18 LNMKELKLLQTIGKGEF--GDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   95 (278)
T ss_dssp             CCGGGEEEEEEEEECSS--CEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEEC
T ss_pred             CChhhceEEeEEecCCC--ceEEEEEEcCCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEe
Confidence            34578888999999999  9999882    12233334434566788999999999999999999997654 57899999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++++|.+++.......+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+....    
T Consensus        96 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  172 (278)
T 1byg_A           96 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD  172 (278)
T ss_dssp             CCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred             cCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccccccccccc
Confidence            99999999999864333489999999999999999999999   99999999999999999999999999986543    


Q ss_pred             ----CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHH
Q 048314          170 ----DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKK  244 (274)
Q Consensus       170 ----~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (274)
                          +..|+|||.+....++.++|+||||+++|+|++ |..||.......   ..     ......     . ....+..
T Consensus       173 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~---~~-----~~~~~~-----~-~~~~~~~  238 (278)
T 1byg_A          173 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD---VV-----PRVEKG-----Y-KMDAPDG  238 (278)
T ss_dssp             ---CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG---HH-----HHHTTT-----C-CCCCCTT
T ss_pred             CCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH---HH-----HHHhcC-----C-CCCCccc
Confidence                467999999988889999999999999999998 999996431110   00     000010     0 1124455


Q ss_pred             HHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          245 NLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       245 ~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+..+.+++.+||+.||++|||+.|+++.|
T Consensus       239 ~~~~l~~li~~~l~~~p~~Rps~~~l~~~L  268 (278)
T 1byg_A          239 CPPAVYEVMKNCWHLDAAMRPSFLQLREQL  268 (278)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCChhhCCCHHHHHHHH
Confidence            678899999999999999999999998864

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=2.8e-42  Score=306.22  Aligned_cols=236  Identities=17%  Similarity=0.157  Sum_probs=187.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .++|.....||.|+|  |.||+|..      .++|.....  .....+.+|+.+|++++||||+++++++.+.+..++||
T Consensus        50 ~~~y~i~~~LG~G~~--g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  127 (387)
T 1kob_A           50 YDYYDILEELGSGAF--GVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLIL  127 (387)
T ss_dssp             GGTEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             ccceEEEEEEecCCC--EEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEE
Confidence            457888899999999  99999821      122222221  12235679999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc--CCCcEEEeccccceec--
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD--EFWTAKISDFGLAKLL--  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~--~~~~~kl~d~g~~~~~--  168 (274)
                      ||+.+|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++  .++.+||+|||++...  
T Consensus       128 E~~~gg~L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~  203 (387)
T 1kob_A          128 EFLSGGELFDRIAA-EDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP  203 (387)
T ss_dssp             ECCCCCBHHHHTTC-TTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred             EcCCCCcHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCC
Confidence            99999999999975 345699999999999999999999999   999999999999997  4577999999998754  


Q ss_pred             --------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          169 --------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       169 --------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                              +++.|+|||++....++.++|||||||++|+|++|..||....   ....+..     ....   ....+..
T Consensus       204 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~---~~~~~~~-----i~~~---~~~~~~~  272 (387)
T 1kob_A          204 DEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED---DLETLQN-----VKRC---DWEFDED  272 (387)
T ss_dssp             TSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS---HHHHHHH-----HHHC---CCCCCSS
T ss_pred             CcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCC---HHHHHHH-----HHhC---CCCCCcc
Confidence                    3677999999998889999999999999999999999996431   1111100     0000   0001111


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .....+..+.+++.+||+.||++|||+.|+++.
T Consensus       273 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h  305 (387)
T 1kob_A          273 AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH  305 (387)
T ss_dssp             TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             ccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence            223456789999999999999999999999863

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.5e-42  Score=299.77  Aligned_cols=232  Identities=20%  Similarity=0.218  Sum_probs=184.0

Q ss_pred             hccccccCCCCCCCCcchhHHHH----------HHHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR----------ALMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      +|...+.||.|+|  |.||+|..          .++|......   ....+.+|+.++++++||||+++++++.+.+..+
T Consensus        45 ~~~~~~~lG~G~~--g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  122 (333)
T 1mqb_A           45 CVTRQKVIGAGEF--GEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM  122 (333)
T ss_dssp             TEEEEEEEEECSS--SEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             HhhcccEEecCCC--eEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence            3344688999999  99999821          2223222211   1234679999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||++....
T Consensus       123 lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~  198 (333)
T 1mqb_A          123 IITEYMENGALDKFLRE-KDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLE  198 (333)
T ss_dssp             EEEECCTTEEHHHHHHH-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred             EEEeCCCCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhhc
Confidence            99999999999999986 446799999999999999999999999   99999999999999999999999999987543


Q ss_pred             --------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          170 --------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       170 --------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                                    +..|+|||.+....++.++||||||+++|+|++ |..||....   . ..+.    ....++    
T Consensus       199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~---~-~~~~----~~~~~~----  266 (333)
T 1mqb_A          199 DDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS---N-HEVM----KAINDG----  266 (333)
T ss_dssp             ------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC---H-HHHH----HHHHTT----
T ss_pred             cccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCC---H-HHHH----HHHHCC----
Confidence                          346999999988889999999999999999998 999996431   1 1111    111111    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       . ....+...+..+.+++.+||+.||++|||+.++++.|
T Consensus       267 -~-~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L  304 (333)
T 1mqb_A          267 -F-RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSIL  304 (333)
T ss_dssp             -C-CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             -C-cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence             0 1123445677899999999999999999999998764

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=6.5e-42  Score=299.52  Aligned_cols=234  Identities=18%  Similarity=0.129  Sum_probs=187.7

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHH-------HHHH----HHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEe
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCM-------RALM----ATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMR   84 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~----~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~   84 (274)
                      .....++|...+.+|+|+|  |.||++.       +++|    .........+.+..|..++..+ +||||+++++++.+
T Consensus        12 ~~~~~~~y~~~~~lG~G~f--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~   89 (345)
T 1xjd_A           12 IKLKIEDFILHKMLGKGSF--GKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT   89 (345)
T ss_dssp             ----CTTEEEEEEEEECSS--SEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             CCCChHHeEEEEEEeeCCC--eEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe
Confidence            3445688999999999999  9999882       1111    1111123445567899999876 89999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      .+..++||||+++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+
T Consensus        90 ~~~~~lv~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~  164 (345)
T 1xjd_A           90 KENLFFVMEYLNGGDLMYHIQS--CHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGM  164 (345)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             CCEEEEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChh
Confidence            9999999999999999999986  35699999999999999999999999   999999999999999999999999999


Q ss_pred             ceec-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          165 AKLL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       165 ~~~~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ++..           +++.|+|||++.+..++.++|+|||||++|||++|..||....   .. .+..    ....    
T Consensus       165 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~---~~-~~~~----~i~~----  232 (345)
T 1xjd_A          165 CKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD---EE-ELFH----SIRM----  232 (345)
T ss_dssp             CBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS---HH-HHHH----HHHH----
T ss_pred             hhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCC---HH-HHHH----HHHh----
Confidence            8642           2677999999998889999999999999999999999996431   11 1111    1111    


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChh-hHHh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK-CVVM  272 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~-evl~  272 (274)
                         .....+...+..+.+++.+||+.||++||++. ++++
T Consensus       233 ---~~~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~  269 (345)
T 1xjd_A          233 ---DNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  269 (345)
T ss_dssp             ---CCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             ---CCCCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence               11124445667899999999999999999997 7654

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=1.1e-41  Score=307.96  Aligned_cols=230  Identities=16%  Similarity=0.158  Sum_probs=181.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-------HHHH----HHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-------RALM----ATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~----~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.||.|+|  |.||++.       +++|    ...........+.+|+.++++++||||+++++++.+.+..+
T Consensus       147 ~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  224 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTF--GKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLC  224 (446)
T ss_dssp             GGGEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEE
T ss_pred             hHHcEEeEEEeeCcC--EEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEE
Confidence            467888999999999  9999871       1111    12223345567889999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      +||||+++|+|.+++..  ...+++..++.++.|++.||.|||+ .   +|+||||||+||+++.++.+||+|||+++..
T Consensus       225 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~  299 (446)
T 4ejn_A          225 FVMEYANGGELFFHLSR--ERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEG  299 (446)
T ss_dssp             EEECCCSSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTT
T ss_pred             EEEeeCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceec
Confidence            99999999999999986  4579999999999999999999998 8   9999999999999999999999999998642


Q ss_pred             -----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 -----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 -----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                                 +++.|+|||++....++.++|||||||++|||++|..||....   .. .+...    ...       .
T Consensus       300 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~---~~-~~~~~----i~~-------~  364 (446)
T 4ejn_A          300 IKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD---HE-KLFEL----ILM-------E  364 (446)
T ss_dssp             CC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS---HH-HHHHH----HHH-------C
T ss_pred             cCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCC---HH-HHHHH----HHh-------C
Confidence                       2678999999998899999999999999999999999996431   11 11110    000       1


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      ....+...+..+.+++.+||+.||.+||     |+.|+++
T Consensus       365 ~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          365 EIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCCCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence            1124445667899999999999999999     9999986

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=3e-42  Score=304.75  Aligned_cols=229  Identities=17%  Similarity=0.135  Sum_probs=178.1

Q ss_pred             cccCCCCCCCCcchhHHH------HHHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCCC
Q 048314           27 SSLNDRNSPRSKSVWSCM------RALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPW   98 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~------~~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g   98 (274)
                      ...||.|+|  |.||+|.      ..++|.+...  ...+.+.+|+.++++++||||+++++++.+.+..++||||+++|
T Consensus        94 ~~~lG~G~~--g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~  171 (373)
T 2x4f_A           94 TEILGGGRF--GQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG  171 (373)
T ss_dssp             EEECC-------CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred             ceEEecCcC--EEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence            567999999  9999982      1222222222  23456789999999999999999999999999999999999999


Q ss_pred             CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE--cCCCcEEEeccccceec--------
Q 048314           99 DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM--DEFWTAKISDFGLAKLL--------  168 (274)
Q Consensus        99 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~--~~~~~~kl~d~g~~~~~--------  168 (274)
                      +|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||++  +.++.+||+|||++...        
T Consensus       172 ~L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~  247 (373)
T 2x4f_A          172 ELFDRIID-ESYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKV  247 (373)
T ss_dssp             EEHHHHHH-TGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCC
T ss_pred             cHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcccccc
Confidence            99999976 345699999999999999999999999   99999999999999  56789999999998754        


Q ss_pred             --CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHH
Q 048314          169 --SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNL  246 (274)
Q Consensus       169 --~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (274)
                        +++.|+|||++....++.++|||||||++|+|++|..||....   ....+...     ....   .-.+.......+
T Consensus       248 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~---~~~~~~~i-----~~~~---~~~~~~~~~~~~  316 (373)
T 2x4f_A          248 NFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN---DAETLNNI-----LACR---WDLEDEEFQDIS  316 (373)
T ss_dssp             CCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS---HHHHHHHH-----HHTC---CCSCSGGGTTSC
T ss_pred             ccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC---HHHHHHHH-----Hhcc---CCCChhhhccCC
Confidence              3677999999988889999999999999999999999996431   11111111     0000   000011122346


Q ss_pred             HHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          247 ENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       247 ~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+.+++.+||+.||++|||+.|+++
T Consensus       317 ~~~~~li~~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          317 EEAKEFISKLLIKEKSWRISASEALK  342 (373)
T ss_dssp             HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            78999999999999999999999986

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.6e-42  Score=320.35  Aligned_cols=225  Identities=18%  Similarity=0.193  Sum_probs=184.2

Q ss_pred             cCCCCCCCCcchhHHHH--------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeCCC
Q 048314           29 LNDRNSPRSKSVWSCMR--------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLP   97 (274)
Q Consensus        29 ~~g~g~~~~g~vy~~~~--------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~   97 (274)
                      .||.|+|  |.||+|..        +++|.....   ...+.+.+|+++|++++|||||+++++|.+ +..++|||||++
T Consensus       343 ~LG~G~f--G~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~  419 (613)
T 2ozo_A          343 ELGCGNF--GSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGG  419 (613)
T ss_dssp             EEEECSS--SEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             EEecCCC--cEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCC
Confidence            5899999  99998821        223333322   234567899999999999999999999876 568999999999


Q ss_pred             CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--------
Q 048314           98 WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--------  169 (274)
Q Consensus        98 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--------  169 (274)
                      |+|.+++.. ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++...        
T Consensus       420 g~L~~~l~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~  495 (613)
T 2ozo_A          420 GPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTA  495 (613)
T ss_dssp             CBHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------
T ss_pred             CcHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeee
Confidence            999999976 456699999999999999999999999   99999999999999999999999999987542        


Q ss_pred             ------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 ------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 ------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            +..|+|||++....++.++||||||+++|||++ |..||..... ..   +.    ..+..+      .....+
T Consensus       496 ~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~-~~---~~----~~i~~~------~~~~~p  561 (613)
T 2ozo_A          496 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG-PE---VM----AFIEQG------KRMECP  561 (613)
T ss_dssp             ------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCS-HH---HH----HHHHTT------CCCCCC
T ss_pred             ccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCH-HH---HH----HHHHcC------CCCCCC
Confidence                  256999999998899999999999999999998 9999975421 11   11    111111      011355


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..++..+.++|..||+.||++|||+.+|++.|
T Consensus       562 ~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L  593 (613)
T 2ozo_A          562 PECPPELYALMSDCWIYKWEDRPDFLTVEQRM  593 (613)
T ss_dssp             TTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            56778999999999999999999999998764

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-42  Score=297.50  Aligned_cols=228  Identities=21%  Similarity=0.217  Sum_probs=178.7

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-CC---CCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-YS---PSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-~~---~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.+|.|+|  |.||+|..      .++|..... ..   ...+..|+..+.++ +||||++++++|.+.+..++
T Consensus        57 ~~y~~~~~LG~G~~--g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~l  134 (311)
T 3p1a_A           57 QSFQRLSRLGHGSY--GEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYL  134 (311)
T ss_dssp             HHEEEEEEEEEETT--EEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hheeeeheeccCCC--eEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEE
Confidence            78888999999999  99999821      122222221 11   12344566666555 89999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ||||+ +++|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++.... 
T Consensus       135 v~e~~-~~~L~~~~~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~  209 (311)
T 3p1a_A          135 QTELC-GPSLQQHCEA-WGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGT  209 (311)
T ss_dssp             EEECC-CCBHHHHHHH-HCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC-
T ss_pred             EEecc-CCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeeccc
Confidence            99999 6799999987 345799999999999999999999999   99999999999999999999999999986543 


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                               ++.|+|||++.+ .++.++||||||+++|||++|..|+...    ..       +.......     .+..
T Consensus       210 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~----~~-------~~~~~~~~-----~~~~  272 (311)
T 3p1a_A          210 AGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG----EG-------WQQLRQGY-----LPPE  272 (311)
T ss_dssp             -----CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH----HH-------HHHHTTTC-----CCHH
T ss_pred             CCCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc----cH-------HHHHhccC-----CCcc
Confidence                     668999998875 7899999999999999999997776422    00       00011110     0111


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .+...+..+.+++.+||+.||++|||++|+++.
T Consensus       273 ~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  305 (311)
T 3p1a_A          273 FTAGLSSELRSVLVMMLEPDPKLRATAEALLAL  305 (311)
T ss_dssp             HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             cccCCCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence            222345789999999999999999999999863

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=2.2e-42  Score=295.04  Aligned_cols=238  Identities=20%  Similarity=0.217  Sum_probs=181.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH---HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR---ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~---~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .++|.....+|.|+|  |.||+|..   .++|.....    ...+.+.+|+.++++++||||+++++++ ..+..++|||
T Consensus        23 ~~~y~~~~~lG~G~~--g~Vy~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e   99 (289)
T 3og7_A           23 DGQITVGQRIGSGSF--GTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ   99 (289)
T ss_dssp             TTSCEEEEEEEECSS--EEEEEEESSSEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred             ccceeeeeEecCCCC--eEEEEEEEcCceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence            456777899999999  99999821   112222211    1124577999999999999999999965 4566899999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-----  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-----  168 (274)
                      |+.+++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++...     
T Consensus       100 ~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  175 (289)
T 3og7_A          100 WCEGSSLYHHLHA-SETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG  175 (289)
T ss_dssp             CCCEEEHHHHHTT-C---CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred             ecCCCcHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccccccc
Confidence            9999999999975 456799999999999999999999999   9999999999999999999999999998632     


Q ss_pred             --------CCCCcCCCcccc---cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 --------SDKGCMAPECYK---RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 --------~~~~~~ape~~~---~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                              +++.|+|||.+.   ...++.++||||||+++|+|++|..||.......   .+.    ..........  +
T Consensus       176 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~---~~~----~~~~~~~~~~--~  246 (289)
T 3og7_A          176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD---QII----EMVGRGSLSP--D  246 (289)
T ss_dssp             --------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHH---HHH----HHHHHTSCCC--C
T ss_pred             cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHH---HHH----HHhcccccCc--c
Confidence                    267899999886   5568889999999999999999999997542111   111    1111111111  0


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .......++..+.+++.+||+.||++|||+.++++.|
T Consensus       247 ~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L  283 (289)
T 3og7_A          247 LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEI  283 (289)
T ss_dssp             TTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             hhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence            1123445678899999999999999999999999864

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=291.34  Aligned_cols=231  Identities=19%  Similarity=0.158  Sum_probs=179.5

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----------------------------CCCCcHHHHHHH
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----------------------------YSPSRPLTLTSI   66 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----------------------------~~~~~~~~e~~~   66 (274)
                      .++|...+.||.|+|  |.||++..      .++|.....                            ...+.+.+|+.+
T Consensus        12 ~~~y~~~~~lG~G~~--g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~   89 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSY--GVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAI   89 (298)
T ss_dssp             ETTEEEEEEEEC--C--CEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHH
T ss_pred             ecceEEEeEEeecCC--EEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHH
Confidence            467888999999999  99999811      112211111                            124668899999


Q ss_pred             HhcCCCCccceEeEEEEe--CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 048314           67 VSRVSWTTDIEVSSVAMR--GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDI  144 (274)
Q Consensus        67 l~~l~h~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl  144 (274)
                      +++++||||+++++++.+  .+..++||||+++++|.+++.   ...+++..++.++.|++.||.|||+.   +++||||
T Consensus        90 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dl  163 (298)
T 2zv2_A           90 LKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT---LKPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDI  163 (298)
T ss_dssp             HHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC---SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCC
T ss_pred             HHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCC
Confidence            999999999999999986  567899999999999988653   35799999999999999999999999   9999999


Q ss_pred             CCCceEEcCCCcEEEeccccceec-----------CCCCcCCCcccccCC---CccccceeehhHhHHHHhhcCCCcccc
Q 048314          145 KPQNILMDEFWTAKISDFGLAKLL-----------SDKGCMAPECYKRTP---ISVKADVYGYGIVLLETICCWENMEID  210 (274)
Q Consensus       145 ~~~nil~~~~~~~kl~d~g~~~~~-----------~~~~~~ape~~~~~~---~~~~~Di~s~G~~l~el~~g~~p~~~~  210 (274)
                      ||+||+++.++.+||+|||++...           +++.|+|||.+....   ++.++||||||+++|+|++|..||...
T Consensus       164 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  243 (298)
T 2zv2_A          164 KPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE  243 (298)
T ss_dssp             CGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc
Confidence            999999999999999999998653           256799999987654   367899999999999999999999643


Q ss_pred             CCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          211 ASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .   . ..+.    .......    . ..+.....+..+.+++.+||+.||++|||+.|+++
T Consensus       244 ~---~-~~~~----~~~~~~~----~-~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          244 R---I-MCLH----SKIKSQA----L-EFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             S---H-HHHH----HHHHHCC----C-CCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             c---H-HHHH----HHHhccc----C-CCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence            1   1 1110    1111110    0 00112245578999999999999999999999976

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=6.6e-42  Score=296.98  Aligned_cols=234  Identities=19%  Similarity=0.181  Sum_probs=188.4

Q ss_pred             hhccccccCCCCCCCCcchhHHHH--------HHHHHhc---CCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcce
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR--------ALMATVN---SPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~--------~~~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~   89 (274)
                      ++|...+.+|.|+|  |.||++..        .++|...   .....+.+.+|+.+++++ +||||+++++++.+.+..+
T Consensus        25 ~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~  102 (327)
T 1fvr_A           25 NDIKFQDVIGEGNF--GQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLY  102 (327)
T ss_dssp             GGCEEEEEEECGGG--CEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEE
T ss_pred             HHccceeeeecCCC--ceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceE
Confidence            67777899999999  99999821        1222222   224456788999999999 8999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 048314           90 TEAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW  155 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~  155 (274)
                      +||||+++|+|.+++....              ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~  179 (327)
T 1fvr_A          103 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENY  179 (327)
T ss_dssp             EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGG
T ss_pred             EEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCC
Confidence            9999999999999998632              24699999999999999999999999   999999999999999999


Q ss_pred             cEEEeccccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHH
Q 048314          156 TAKISDFGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVY  224 (274)
Q Consensus       156 ~~kl~d~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~  224 (274)
                      .+||+|||++....          +..|+|||.+....++.++||||||+++|+|++ |..||....   .. .+.    
T Consensus       180 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~---~~-~~~----  251 (327)
T 1fvr_A          180 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT---CA-ELY----  251 (327)
T ss_dssp             CEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC---HH-HHH----
T ss_pred             eEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc---HH-HHH----
Confidence            99999999986432          457999999988888999999999999999998 999996431   10 000    


Q ss_pred             HHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          225 KCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ....     ... ....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       252 ~~~~-----~~~-~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  295 (327)
T 1fvr_A          252 EKLP-----QGY-RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL  295 (327)
T ss_dssp             HHGG-----GTC-CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHhh-----cCC-CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            1111     101 1123445667899999999999999999999998764

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.5e-41  Score=287.96  Aligned_cols=232  Identities=20%  Similarity=0.220  Sum_probs=175.2

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH------HHHHH-----hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMAT-----VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~-----~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ...++|...+.+|.|+|  |.||++..      .++|.     .......+.+.+|+.++++++||||+++++++.+.+.
T Consensus         8 ~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   85 (278)
T 3cok_A            8 EKIEDFKVGNLLGKGSF--AGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNY   85 (278)
T ss_dssp             SSGGGEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSE
T ss_pred             cccccceeeeeecCCCc--eEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCe
Confidence            34578888999999999  99999821      11111     1111233567899999999999999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+..
T Consensus        86 ~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~  161 (278)
T 3cok_A           86 VYLVLEMCHNGEMNRYLKN-RVKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQ  161 (278)
T ss_dssp             EEEEEECCTTEEHHHHHHT-CSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEEecCCCCcHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceee
Confidence            9999999999999999986 346799999999999999999999999   999999999999999999999999999875


Q ss_pred             cC-----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          168 LS-----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       168 ~~-----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      ..           ++.|+|||.+....++.++|+||||+++|+|++|..||........                .....
T Consensus       162 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~----------------~~~~~  225 (278)
T 3cok_A          162 LKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT----------------LNKVV  225 (278)
T ss_dssp             CC----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC---------------------CC
T ss_pred             ccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH----------------HHHHh
Confidence            43           5679999999888889999999999999999999999975422110                00111


Q ss_pred             -cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 -RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 -~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       .....+...+..+.+++.+||+.||++|||+.++++
T Consensus       226 ~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          226 LADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             SSCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hcccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence             111234455678999999999999999999999986

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=1.8e-42  Score=298.04  Aligned_cols=237  Identities=17%  Similarity=0.197  Sum_probs=191.0

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCCC---CCCcHHHHHHHHhcC-CCCccceEeEEEEe
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSPY---SPSRPLTLTSIVSRV-SWTTDIEVSSVAMR   84 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~~---~~~~~~~e~~~l~~l-~h~niv~l~~~~~~   84 (274)
                      ..++|...+.+|.|+|  |.||++.           ..++|......   ..+.+.+|+.+++++ +||||+++++++.+
T Consensus        21 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~   98 (313)
T 1t46_A           21 PRNRLSFGKTLGAGAF--GKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTI   98 (313)
T ss_dssp             CGGGEEEEEEEEECSS--EEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             ChhhhhHHHhhCccCC--cceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEec
Confidence            3467888899999999  9999883           12233322221   235577999999999 89999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCC----------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAE----------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN  148 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~----------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~n  148 (274)
                      .+..++||||+++|+|.+++.....                ..+++..++.++.|++.||.|||+.   +++|+||||+|
T Consensus        99 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~N  175 (313)
T 1t46_A           99 GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARN  175 (313)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGG
T ss_pred             CCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccce
Confidence            9999999999999999999987432                2489999999999999999999999   99999999999


Q ss_pred             eEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCCh
Q 048314          149 ILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKP  214 (274)
Q Consensus       149 il~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~  214 (274)
                      |+++.++.+||+|||++....             +..|+|||.+....++.++||||||+++|+|++ |..||.......
T Consensus       176 il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~  255 (313)
T 1t46_A          176 ILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDS  255 (313)
T ss_dssp             EEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSH
T ss_pred             EEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchh
Confidence            999999999999999987543             245999999988889999999999999999998 999996542221


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          215 EEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .   ...    ....     ... ...+...+..+.+++.+||+.||.+|||+.|+++.|
T Consensus       256 ~---~~~----~~~~-----~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  302 (313)
T 1t46_A          256 K---FYK----MIKE-----GFR-MLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI  302 (313)
T ss_dssp             H---HHH----HHHH-----TCC-CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             H---HHH----Hhcc-----CCC-CCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence            1   111    0111     011 123345567899999999999999999999999865

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1e-41  Score=290.68  Aligned_cols=241  Identities=18%  Similarity=0.167  Sum_probs=185.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-----HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ++|.....+|.|+|  |.||++..     .++|.+...    ...+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus         2 ~~y~~~~~lg~G~~--g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (288)
T 1ob3_A            2 EKYHGLEKIGEGTY--GVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVF   79 (288)
T ss_dssp             CSEEEEEEEEEETT--EEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             ccchhhhhcccCCC--EEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEE
Confidence            45777889999999  99999832     112222111    23456779999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec----
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL----  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~----  168 (274)
                      ||+++ +|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++...    
T Consensus        80 e~~~~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  154 (288)
T 1ob3_A           80 EHLDQ-DLKKLLDV-CEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPV  154 (288)
T ss_dssp             ECCSE-EHHHHHHT-STTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC--
T ss_pred             EecCC-CHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCccc
Confidence            99985 99999986 346799999999999999999999999   9999999999999999999999999988542    


Q ss_pred             -------CCCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh---hhhh---
Q 048314          169 -------SDKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR---ELNK---  234 (274)
Q Consensus       169 -------~~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---  234 (274)
                             +++.|+|||.+... .++.++||||||+++|+|++|..||....   ....+.. ........   ....   
T Consensus       155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~  230 (288)
T 1ob3_A          155 RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS---EADQLMR-IFRILGTPNSKNWPNVTE  230 (288)
T ss_dssp             -------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS---HHHHHHH-HHHHHCCCCTTTSTTGGG
T ss_pred             cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC---HHHHHHH-HHHHHCCCChhhchhhhc
Confidence                   26779999998754 58999999999999999999999996431   1111111 11110000   0000   


Q ss_pred             --hhcCC----------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          235 --LVRGT----------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       235 --~~~~~----------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                        ..++.          ......+..+.+++.+||+.||++|||++|+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  281 (288)
T 1ob3_A          231 LPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (288)
T ss_dssp             STTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence              00000          1122346788999999999999999999999863

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.3e-41  Score=288.51  Aligned_cols=232  Identities=16%  Similarity=0.133  Sum_probs=189.3

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH-------HHHH----HHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM-------RALM----ATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~----~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      +.++|...+.+|.|++  |.||++.       +++|    .........+.+.+|+.++++++||||+++++++.+.+..
T Consensus         7 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   84 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKF--GNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRV   84 (279)
T ss_dssp             CGGGEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             ecccEEEeeEEecCCC--eEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEE
Confidence            4578888999999999  9999981       1111    1111112345578999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++...
T Consensus        85 ~lv~e~~~~~~l~~~l~~--~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~  159 (279)
T 3fdn_A           85 YLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHA  159 (279)
T ss_dssp             EEEECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC
T ss_pred             EEEEecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccC
Confidence            999999999999999986  35699999999999999999999999   9999999999999999999999999987543


Q ss_pred             ---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               +++.|+|||.+....++.++||||||+++|+|++|..||....   .....     ....     .  ...
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~-----~~~~-----~--~~~  224 (279)
T 3fdn_A          160 PSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT---YQETY-----KRIS-----R--VEF  224 (279)
T ss_dssp             --------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS---HHHHH-----HHHH-----H--TCC
T ss_pred             CcccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCc---HHHHH-----HHHH-----h--CCC
Confidence                     3678999999988888999999999999999999999996431   11100     0000     0  011


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ..+...+..+.+++.+||+.||++|||+.|+++.
T Consensus       225 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          225 TFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH  258 (279)
T ss_dssp             CCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred             CCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            2444566789999999999999999999999863

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.5e-41  Score=313.49  Aligned_cols=237  Identities=21%  Similarity=0.208  Sum_probs=193.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH-------HHH----HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM-------RAL----MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~----~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      ..++|...+.||+|+|  |.||++.       +++    +.........+.+.+|+.+|++++||||+++++++.+.+..
T Consensus       182 ~~~~f~~~~~LG~G~f--G~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l  259 (576)
T 2acx_A          182 TKNTFRQYRVLGKGGF--GEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDAL  259 (576)
T ss_dssp             CGGGEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             cccceEEEEEEeeCCC--EEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEE
Confidence            3467888999999999  9999881       111    11122223445578999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||||+++|+|.+++.......+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++...
T Consensus       260 ~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~  336 (576)
T 2acx_A          260 CLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHV  336 (576)
T ss_dssp             EEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceec
Confidence            9999999999999999875555699999999999999999999999   9999999999999999999999999998754


Q ss_pred             C----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          169 S----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       169 ~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                      .          ++.|+|||++....++.++|+|||||++|||++|..||...........+....    ..       .+
T Consensus       337 ~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i----~~-------~~  405 (576)
T 2acx_A          337 PEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLV----KE-------VP  405 (576)
T ss_dssp             CTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHH----HH-------CC
T ss_pred             ccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHh----hc-------cc
Confidence            2          677999999998889999999999999999999999997543222111111111    00       11


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      ...+...+..+.+++.+||+.||++||     |++||++
T Consensus       406 ~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          406 EEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred             ccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence            134455678899999999999999999     7888875

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=1.4e-41  Score=297.43  Aligned_cols=238  Identities=16%  Similarity=0.162  Sum_probs=186.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~   88 (274)
                      .++|...+.||+|+|  |.||++..      .++|.+...     ...+.+.+|+.++.++ +||||+++++++.+.+..
T Consensus         8 ~~~y~~~~~lG~G~f--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~   85 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSY--AKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRL   85 (345)
T ss_dssp             GGGEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             hhheEEEEEEEecCC--eEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEE
Confidence            467888999999999  99998821      112222211     1123466899999987 799999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||||+++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++..
T Consensus        86 ~lv~e~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~  160 (345)
T 3a8x_A           86 FFVIEYVNGGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG  160 (345)
T ss_dssp             EEEECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCS
T ss_pred             EEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccc
Confidence            999999999999999986  35799999999999999999999999   9999999999999999999999999998642


Q ss_pred             -----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhH-HHHHHHHHHHhhhhhhhhh
Q 048314          169 -----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI-ILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       169 -----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  236 (274)
                                 +++.|+|||++....++.++|+|||||++|||++|..||.......... .............      
T Consensus       161 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~------  234 (345)
T 3a8x_A          161 LRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK------  234 (345)
T ss_dssp             CCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHC------
T ss_pred             cCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcC------
Confidence                       3678999999998899999999999999999999999996432221110 0011111111111      


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCCh------hhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSM------KCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~------~evl~  272 (274)
                       ....|...+..+.+++.+||+.||++||++      .|+++
T Consensus       235 -~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~  275 (345)
T 3a8x_A          235 -QIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQG  275 (345)
T ss_dssp             -CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHT
T ss_pred             -CCCCCCCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhc
Confidence             113455567789999999999999999996      56654

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=2.7e-41  Score=296.47  Aligned_cols=231  Identities=19%  Similarity=0.161  Sum_probs=187.6

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH-------HHHH----HHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM-------RALM----ATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~----~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~   87 (274)
                      ..++|...+.||+|+|  |.||++.       +++|    .........+.+.+|..++..+ +||||+++++++.+.+.
T Consensus        18 ~~~~y~~~~~lG~G~f--g~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~   95 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSF--GKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR   95 (353)
T ss_dssp             -CTTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSE
T ss_pred             chHHcEEEEEEeeCCC--EEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCE
Confidence            4578999999999999  9999881       1111    1111223445677999999988 79999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++.
T Consensus        96 ~~lv~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~  170 (353)
T 2i0e_A           96 LYFVMEYVNGGDLMYHIQQ--VGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKE  170 (353)
T ss_dssp             EEEEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             EEEEEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCcccc
Confidence            9999999999999999986  35699999999999999999999999   999999999999999999999999999864


Q ss_pred             c-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          168 L-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       168 ~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      .           +++.|+|||++....++.++|+|||||++|||++|..||....   .. .+..    .+..       
T Consensus       171 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~---~~-~~~~----~i~~-------  235 (353)
T 2i0e_A          171 NIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED---ED-ELFQ----SIME-------  235 (353)
T ss_dssp             CCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS---HH-HHHH----HHHH-------
T ss_pred             cccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCC---HH-HHHH----HHHh-------
Confidence            2           2677999999998899999999999999999999999996431   11 1111    0111       


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCC-----hhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPS-----MKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~evl~  272 (274)
                      .....|...+..+.+++.+||+.||++||+     +.++++
T Consensus       236 ~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~  276 (353)
T 2i0e_A          236 HNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  276 (353)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence            111345566788999999999999999996     467654

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=5e-42  Score=292.98  Aligned_cols=233  Identities=16%  Similarity=0.176  Sum_probs=186.3

Q ss_pred             Hhhhccccc-cCCCCCCCCcchhHHHH--------HHHHHhcCCC----CCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           20 KLRNFCRSS-LNDRNSPRSKSVWSCMR--------ALMATVNSPY----SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        20 ~~~~f~~~~-~~g~g~~~~g~vy~~~~--------~~~~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      ..++|.... .+|.|+|  |.||+|..        .++|......    ..+.+.+|+.++++++||||+++++++ +.+
T Consensus        14 ~~~~y~~~~~~lg~G~~--g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~   90 (291)
T 1xbb_A           14 DRKLLTLEDKELGSGNF--GTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAE   90 (291)
T ss_dssp             CGGGEEEEEEEEEECSS--EEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESS
T ss_pred             cchhhhhccCccccccC--eeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCC
Confidence            345666666 8999999  99999811        1222222211    134577999999999999999999998 667


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++||||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++.
T Consensus        91 ~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  165 (291)
T 1xbb_A           91 SWMLVMEMAELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSK  165 (291)
T ss_dssp             SEEEEEECCTTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             CcEEEEEeCCCCCHHHHHHh--CcCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcce
Confidence            78999999999999999986  45699999999999999999999999   99999999999999999999999999987


Q ss_pred             ecC--------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhh
Q 048314          167 LLS--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRE  231 (274)
Q Consensus       167 ~~~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  231 (274)
                      ...              +..|+|||.+....++.++||||||+++|+|++ |..||....   . ..+.    ...... 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~---~-~~~~----~~~~~~-  236 (291)
T 1xbb_A          166 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK---G-SEVT----AMLEKG-  236 (291)
T ss_dssp             ECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC---H-HHHH----HHHHTT-
T ss_pred             eeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCC---H-HHHH----HHHHcC-
Confidence            543              245999999988888999999999999999999 999996431   1 1111    111111 


Q ss_pred             hhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          232 LNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                           .....+...+..+.+++.+||+.||++|||+.++++.|
T Consensus       237 -----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L  274 (291)
T 1xbb_A          237 -----ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL  274 (291)
T ss_dssp             -----CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             -----CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence                 11124456678899999999999999999999998864

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=3e-42  Score=292.33  Aligned_cols=235  Identities=17%  Similarity=0.252  Sum_probs=188.0

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH-----HHHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM-----RALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~-----~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ..++|.....+|.|+|  |.||+|.     ..++|... .....+.+.+|++++++++||||+++++++. .+..++|||
T Consensus        11 ~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e   87 (279)
T 1qpc_A           11 PRETLKLVERLGAGQF--GEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITE   87 (279)
T ss_dssp             CGGGEEEEEEEEEETT--EEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred             CHHhhhheeeecCCCC--eEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEe
Confidence            3567888899999999  9999982     11222222 2234566789999999999999999999986 456899999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++++|.+++.......+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+....    
T Consensus        88 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  164 (279)
T 1qpc_A           88 YMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY  164 (279)
T ss_dssp             CCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE
T ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCccc
Confidence            99999999999753333699999999999999999999999   99999999999999999999999999987543    


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                              +..|+|||.+....++.++||||||+++|+|++ |..||....   .. .+..    .....     . ...
T Consensus       165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~---~~-~~~~----~~~~~-----~-~~~  230 (279)
T 1qpc_A          165 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT---NP-EVIQ----NLERG-----Y-RMV  230 (279)
T ss_dssp             ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC---HH-HHHH----HHHTT-----C-CCC
T ss_pred             ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccC---HH-HHHH----HHhcc-----c-CCC
Confidence                    346999999988888999999999999999999 899986431   11 1110    00110     0 112


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+...+..+.+++.+||+.||++|||+.++++.|
T Consensus       231 ~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l  264 (279)
T 1qpc_A          231 RPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVL  264 (279)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHhccChhhCCCHHHHHHHH
Confidence            3445667899999999999999999999998764

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=3.5e-41  Score=306.22  Aligned_cols=230  Identities=17%  Similarity=0.167  Sum_probs=187.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHH-----HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMA-----TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~-----~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|.....+|.|+|  |.||+|..      .++|     ........+.+.+|+.+++.++||||+++++++.+.+..+
T Consensus        15 ~~~Y~l~~~LG~G~f--g~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~   92 (476)
T 2y94_A           15 IGHYILGDTLGVGTF--GKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIF   92 (476)
T ss_dssp             ETTEEEEEEEECCSS--SCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             ecCEEEEEEEeeCCC--eEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            367778899999999  99998811      1111     1112223456789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      +||||+++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++... 
T Consensus        93 lv~E~~~gg~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~  167 (476)
T 2y94_A           93 MVMEYVSGGELFDYICK--NGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMS  167 (476)
T ss_dssp             EEEECCSSEEHHHHTTS--SSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred             EEEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhcc
Confidence            99999999999999975  45799999999999999999999999   9999999999999999999999999998754 


Q ss_pred             ---------CCCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          169 ---------SDKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                               +++.|+|||.+.+..+ +.++||||+|+++|+|++|..||.......    +.    ....++.       
T Consensus       168 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~----~~----~~i~~~~-------  232 (476)
T 2y94_A          168 DGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPT----LF----KKICDGI-------  232 (476)
T ss_dssp             TTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHH----HH----HHHHTTC-------
T ss_pred             ccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHH----HH----HHHhcCC-------
Confidence                     2678999999987765 689999999999999999999997442110    10    1111110       


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+...+..+.+++.+||+.||++|||+.|+++
T Consensus       233 ~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          233 FYTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence            0233445678999999999999999999999986

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=2.3e-41  Score=292.56  Aligned_cols=241  Identities=20%  Similarity=0.219  Sum_probs=172.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|.....+|.|+|  |.||+|.      ..++|.+...   ...+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus         4 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   81 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTY--ATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLV   81 (317)
T ss_dssp             -----------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEE
T ss_pred             ccceeEeeEECCCCC--EEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEE
Confidence            457888899999999  9999982      1222322221   2345678999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           92 AALDLPWDLAYIIFCSA----ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      |||++ |+|.+++....    ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++..
T Consensus        82 ~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~  157 (317)
T 2pmi_A           82 FEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARA  157 (317)
T ss_dssp             EECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEE
T ss_pred             EEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCcccee
Confidence            99998 69999997532    24589999999999999999999999   999999999999999999999999999875


Q ss_pred             cC-----------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh-----
Q 048314          168 LS-----------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR-----  230 (274)
Q Consensus       168 ~~-----------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-----  230 (274)
                      ..           ++.|+|||.+.. ..++.++|||||||++|+|++|..||....   ....+ ..+.......     
T Consensus       158 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~---~~~~~-~~i~~~~~~~~~~~~  233 (317)
T 2pmi_A          158 FGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTN---DEEQL-KLIFDIMGTPNESLW  233 (317)
T ss_dssp             TTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS---HHHHH-HHHHHHHCSCCTTTC
T ss_pred             cCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC---hHHHH-HHHHHHhCCCChhHh
Confidence            32           567999999876 468999999999999999999999996431   11111 1111110000     


Q ss_pred             -hh---hh---------------hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          231 -EL---NK---------------LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       231 -~~---~~---------------~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       ..   ..               .+.+ ..+...+..+.+++.+||+.||++|||+.|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  293 (317)
T 2pmi_A          234 PSVTKLPKYNPNIQQRPPRDLRQVLQP-HTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH  293 (317)
T ss_dssp             GGGGGCTTCCTTCCCCCCCCSHHHHGG-GCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hhhhhhhhcccccccccchhHHHhhcc-cccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence             00   00               0000 011134568999999999999999999999986

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=6.3e-41  Score=293.13  Aligned_cols=241  Identities=12%  Similarity=0.087  Sum_probs=179.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHHH---------HHHHhcCC-------------CCCCcHHHHHHHHhcCCCCccceEe
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMRA---------LMATVNSP-------------YSPSRPLTLTSIVSRVSWTTDIEVS   79 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~~---------~~~~~~~~-------------~~~~~~~~e~~~l~~l~h~niv~l~   79 (274)
                      ++|...+.+|+|+|  |.||+|...         ++|.....             ...+.+.+|+..++.++||||++++
T Consensus        37 ~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~  114 (345)
T 2v62_A           37 NQWVLGKKIGSGGF--GLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFY  114 (345)
T ss_dssp             CEEEEEEEC--------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEE
T ss_pred             ceEEEEeeEeecCC--eEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceee
Confidence            57888899999999  999988221         11111111             0223356788889999999999999


Q ss_pred             EEEEe----CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 048314           80 SVAMR----GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW  155 (274)
Q Consensus        80 ~~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~  155 (274)
                      +++.+    ....++||||+ +++|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++
T Consensus       115 ~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~  188 (345)
T 2v62_A          115 GSGLTEFKGRSYRFMVMERL-GIDLQKISGQ--NGTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKN  188 (345)
T ss_dssp             EEEEEESSSCEEEEEEEECE-EEEHHHHCBG--GGBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSS
T ss_pred             cccccccCCCcEEEEEEecc-CCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCC
Confidence            99987    77899999999 9999999976  23799999999999999999999999   999999999999998877


Q ss_pred             --cEEEeccccceec------------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChh
Q 048314          156 --TAKISDFGLAKLL------------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPE  215 (274)
Q Consensus       156 --~~kl~d~g~~~~~------------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~  215 (274)
                        .+||+|||+++..                  ++..|+|||.+....++.++||||||+++|||++|..||........
T Consensus       189 ~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~  268 (345)
T 2v62_A          189 PDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPV  268 (345)
T ss_dssp             TTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHH
T ss_pred             CCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccH
Confidence              9999999999643                  36789999999988899999999999999999999999964322221


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          216 EIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...  . ....... .....+.....+...+..+.+++.+||+.||++|||+.+|++.|
T Consensus       269 ~~~--~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L  323 (345)
T 2v62_A          269 AVQ--T-AKTNLLD-ELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKIL  323 (345)
T ss_dssp             HHH--H-HHHHHHH-TTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred             HHH--H-HHHhhcc-cccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHH
Confidence            111  1 0010000 11111100001114456899999999999999999999999864

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.1e-41  Score=291.10  Aligned_cols=241  Identities=15%  Similarity=0.148  Sum_probs=183.3

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCC----CCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYS----PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ++|...+.+|.|+|  |.||++..      .++|.......    .+.+.+|+.++++++||||+++++++.+++..++|
T Consensus         2 ~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   79 (292)
T 3o0g_A            2 QKYEKLEKIGEGTY--GTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CSEEEEEEEEECSS--SEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCceeeeEecCCCC--eEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEE
Confidence            46777889999999  99999921      22232222211    24567999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |||+.+ ++.+++.. ..+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++....  
T Consensus        80 ~e~~~~-~l~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  154 (292)
T 3o0g_A           80 FEFCDQ-DLKKYFDS-CNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIP  154 (292)
T ss_dssp             EECCSE-EHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSC
T ss_pred             EecCCC-CHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCc
Confidence            999975 66666655 356799999999999999999999999   99999999999999999999999999997543  


Q ss_pred             ---------CCCcCCCcccccCC-CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh---h---hh
Q 048314          170 ---------DKGCMAPECYKRTP-ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR---E---LN  233 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~-~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~---~~  233 (274)
                               ++.|+|||.+.+.. ++.++||||||+++|+|++|..|+.......   .....+.......   .   ..
T Consensus       155 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~  231 (292)
T 3o0g_A          155 VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVD---DQLKRIFRLLGTPTEEQWPSMT  231 (292)
T ss_dssp             CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHH---HHHHHHHHHHCCCCTTTCTTGG
T ss_pred             cccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHH---HHHHHHHHHhCCCChhhhhhhc
Confidence                     56699999987765 7999999999999999999988875432211   1111111111000   0   00


Q ss_pred             hhhcC------------CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 KLVRG------------TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 ~~~~~------------~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+.            .......+..+.+++.+||+.||++|||++|+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          232 KLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             GSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence            00000            0122345678899999999999999999999986

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.6e-42  Score=305.17  Aligned_cols=231  Identities=22%  Similarity=0.267  Sum_probs=178.5

Q ss_pred             ccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEe-CCcceE
Q 048314           24 FCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR-GSKPST   90 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~l   90 (274)
                      |.....||+|+|  |.||+|..         .++|.....   ...+++.+|+.++++++||||++++++|.+ .+..++
T Consensus        91 ~~~~~~LG~G~f--g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l  168 (373)
T 3c1x_A           91 VHFNEVIGRGHF--GCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  168 (373)
T ss_dssp             EEEEEEEECCSS--SEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred             eecCcEeeeCCC--eEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence            444678999999  99998831         122222221   123457899999999999999999999865 567899


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++... 
T Consensus       169 v~e~~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~  244 (373)
T 3c1x_A          169 VLPYMKHGDLRNFIRN-ETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYD  244 (373)
T ss_dssp             EEECCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred             EEECCCCCCHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeeccccccccc
Confidence            9999999999999976 445689999999999999999999999   99999999999999999999999999986432 


Q ss_pred             --------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          170 --------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       170 --------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                                    +..|+|||.+....++.++||||||+++|||++ |.+||.........    .    ....+    
T Consensus       245 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~----~----~~~~~----  312 (373)
T 3c1x_A          245 KEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDIT----V----YLLQG----  312 (373)
T ss_dssp             -------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHH----H----HHHTT----
T ss_pred             cccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHH----H----HHHcC----
Confidence                          346999999998899999999999999999999 56676543211110    0    00111    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .....+..++..+.+++.+||+.||++|||+.|+++.|
T Consensus       313 --~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L  350 (373)
T 3c1x_A          313 --RRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRI  350 (373)
T ss_dssp             --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence              01123445667899999999999999999999998864

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=6.2e-41  Score=288.40  Aligned_cols=244  Identities=17%  Similarity=0.144  Sum_probs=183.9

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-------CCCCcHHHHHHHHhcCC---CCccceEeEEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-------YSPSRPLTLTSIVSRVS---WTTDIEVSSVAM   83 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-------~~~~~~~~e~~~l~~l~---h~niv~l~~~~~   83 (274)
                      ..++|.....+|.|+|  |.||++..      .++|.+...       .....+.+|+.++++++   ||||+++++++.
T Consensus         7 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~   84 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAY--GTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCA   84 (308)
T ss_dssp             ---CCEEEEEECCSSS--CCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEE
T ss_pred             cccceEEEEEEecCCC--eEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeee
Confidence            3568888999999999  99999831      122222211       11235668888887765   999999999998


Q ss_pred             eCC-----cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 048314           84 RGS-----KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK  158 (274)
Q Consensus        84 ~~~-----~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~k  158 (274)
                      +..     ..++||||+. |+|.+++.......+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+|
T Consensus        85 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~k  160 (308)
T 3g33_A           85 TSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVK  160 (308)
T ss_dssp             ECCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEE
T ss_pred             ccCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEE
Confidence            755     4799999997 6999999875555699999999999999999999999   999999999999999999999


Q ss_pred             EeccccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh
Q 048314          159 ISDFGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI  228 (274)
Q Consensus       159 l~d~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~  228 (274)
                      |+|||++....          ++.|+|||.+....++.++|||||||++|+|++|..||....   ....+.. ......
T Consensus       161 l~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~---~~~~~~~-i~~~~~  236 (308)
T 3g33_A          161 LADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS---EADQLGK-IFDLIG  236 (308)
T ss_dssp             ECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSS---HHHHHHH-HHHHHC
T ss_pred             EeeCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCC---HHHHHHH-HHHHhC
Confidence            99999986432          678999999998899999999999999999999999996431   1111111 111100


Q ss_pred             hhhhhh----------hhcCC------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          229 NRELNK----------LVRGT------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       229 ~~~~~~----------~~~~~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ......          ...+.      ......+..+.+++.+||+.||++|||+.|+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  297 (308)
T 3g33_A          237 LPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH  297 (308)
T ss_dssp             CCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence            000000          00000      0112345788999999999999999999999863

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=9.4e-42  Score=304.95  Aligned_cols=243  Identities=14%  Similarity=0.035  Sum_probs=190.4

Q ss_pred             hhhhHHHHhhhccccccCCCCCCCCcchhHHHH-------HHH----HHhcCCCCCCcHHHHHHHHhcCCCCccceEeEE
Q 048314           13 ARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR-------ALM----ATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSV   81 (274)
Q Consensus        13 ~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-------~~~----~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~   81 (274)
                      ...+.....++|...+.||+|+|  |.||++..       ++|    .........+.+.+|+.++.+++||||++++++
T Consensus        52 ~~~~~~~~~~~f~~~~~lG~G~f--G~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~  129 (412)
T 2vd5_A           52 RLKEVRLQRDDFEILKVIGRGAF--SEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFA  129 (412)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEE
T ss_pred             hhhhccCChhhEEEEEEEeeCCC--eEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEE
Confidence            44555666789999999999999  99998811       111    111112345678899999999999999999999


Q ss_pred             EEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 048314           82 AMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD  161 (274)
Q Consensus        82 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  161 (274)
                      +.+.+..++||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|
T Consensus       130 ~~~~~~~~lVmE~~~gg~L~~~l~~-~~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~D  205 (412)
T 2vd5_A          130 FQDENYLYLVMEYYVGGDLLTLLSK-FGERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLAD  205 (412)
T ss_dssp             EECSSEEEEEECCCCSCBHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECC
T ss_pred             EeeCCEEEEEEcCCCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEee
Confidence            9999999999999999999999986 234799999999999999999999999   999999999999999999999999


Q ss_pred             cccceec------------CCCCcCCCcccc-------cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH
Q 048314          162 FGLAKLL------------SDKGCMAPECYK-------RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW  222 (274)
Q Consensus       162 ~g~~~~~------------~~~~~~ape~~~-------~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~  222 (274)
                      ||+++..            +++.|+|||++.       ...++.++|+|||||++|||++|+.||....   ....... 
T Consensus       206 FGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~---~~~~~~~-  281 (412)
T 2vd5_A          206 FGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADS---TAETYGK-  281 (412)
T ss_dssp             CTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSS---HHHHHHH-
T ss_pred             chhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCC---HHHHHHH-
Confidence            9998643            367899999987       3568899999999999999999999996431   1111111 


Q ss_pred             HHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCC---CChhhHHh
Q 048314          223 VYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALR---PSMKCVVM  272 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~R---ps~~evl~  272 (274)
                         . ....  ........+...+.++.++|.+||. +|++|   |+++|+++
T Consensus       282 ---i-~~~~--~~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          282 ---I-VHYK--EHLSLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             ---H-HTHH--HHCCCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             ---H-Hhcc--cCcCCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence               0 0000  0000001223456789999999999 99998   68999875

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=3.4e-42  Score=298.79  Aligned_cols=250  Identities=18%  Similarity=0.200  Sum_probs=191.4

Q ss_pred             cccccchhhhhhhHHHHhhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC---CCCCcHHHHHHHHhc
Q 048314            4 QTSSTSAWIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP---YSPSRPLTLTSIVSR   69 (274)
Q Consensus         4 ~~~~~~~~~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~---~~~~~~~~e~~~l~~   69 (274)
                      +++.++..-...++  ..++|...+.+|.|+|  |.||+|..           .++|.....   ....++.+|+.++++
T Consensus        14 ~~~~sss~~~~~~~--~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~   89 (327)
T 2yfx_A           14 FAGKTSSISDLKEV--PRKNITLIRGLGHGAF--GEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK   89 (327)
T ss_dssp             ETTEEECGGGSCBC--CGGGCEEEEECC--CS--SCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCccchhhcccC--ChhheEEEEEEcCCCC--eeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhh
Confidence            33444444334333  3468888999999999  99999842           122222211   122356789999999


Q ss_pred             CCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 048314           70 VSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAE-----RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDI  144 (274)
Q Consensus        70 l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl  144 (274)
                      ++||||+++++++.+.+..++||||+++|+|.+++.....     ..+++..++.++.|++.||.|||+.   +++|+||
T Consensus        90 l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dl  166 (327)
T 2yfx_A           90 FNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDI  166 (327)
T ss_dssp             CCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred             CCCCCCCeEEEEEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcC
Confidence            9999999999999999999999999999999999987432     3489999999999999999999999   9999999


Q ss_pred             CCCceEEc---CCCcEEEeccccceec-------------CCCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCc
Q 048314          145 KPQNILMD---EFWTAKISDFGLAKLL-------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENM  207 (274)
Q Consensus       145 ~~~nil~~---~~~~~kl~d~g~~~~~-------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~  207 (274)
                      ||+||+++   .+..++|+|||++...             ++..|+|||.+....++.++||||||+++|+|++ |..||
T Consensus       167 kp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~  246 (327)
T 2yfx_A          167 AARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPY  246 (327)
T ss_dssp             CGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred             CHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCC
Confidence            99999998   4456999999987532             2457999999988889999999999999999998 88998


Q ss_pred             cccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          208 EIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ....   .. ....    ......      ....+...+..+.+++.+||+.||.+|||+.++++.|
T Consensus       247 ~~~~---~~-~~~~----~~~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l  299 (327)
T 2yfx_A          247 PSKS---NQ-EVLE----FVTSGG------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERI  299 (327)
T ss_dssp             TTCC---HH-HHHH----HHHTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCcC---HH-HHHH----HHhcCC------CCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence            6431   11 1111    011110      1123445667899999999999999999999999864

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=8.3e-42  Score=296.53  Aligned_cols=234  Identities=15%  Similarity=0.111  Sum_probs=168.3

Q ss_pred             cccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceEEEEeCCCCC
Q 048314           27 SSLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPSTEAALDLPWD   99 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gs   99 (274)
                      .+.||.|+|  |.||++..      .++|.+.. .....+.+|+.++..+. ||||+++++++.+....++||||+++|+
T Consensus        16 ~~~lG~G~~--g~V~~~~~~~~~~~vavK~~~~-~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~   92 (325)
T 3kn6_A           16 DKPLGEGSF--SICRKCVHKKSNQAFAVKIISK-RMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE   92 (325)
T ss_dssp             SCCSEEETT--EEEEEEEETTTCCEEEEEEEEG-GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred             CCccccCCC--eEEEEEEECCCCCEEEEEEECh-hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence            578999999  99999822      11222211 12345678999999998 9999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC---cEEEeccccceecC-------
Q 048314          100 LAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKISDFGLAKLLS-------  169 (274)
Q Consensus       100 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~---~~kl~d~g~~~~~~-------  169 (274)
                      |.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++   .+||+|||++....       
T Consensus        93 L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~  167 (325)
T 3kn6_A           93 LFERIKK--KKHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLK  167 (325)
T ss_dssp             HHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC------
T ss_pred             HHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCccc
Confidence            9999986  46799999999999999999999999   999999999999997655   89999999987532       


Q ss_pred             ----CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHH
Q 048314          170 ----DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKN  245 (274)
Q Consensus       170 ----~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (274)
                          ++.|+|||.+....++.++||||||+++|+|++|..||................ .....+.   ...+.+.....
T Consensus       168 ~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~-~~i~~~~---~~~~~~~~~~~  243 (325)
T 3kn6_A          168 TPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIM-KKIKKGD---FSFEGEAWKNV  243 (325)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHH-HHHTTTC---CCCCSHHHHTS
T ss_pred             ccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHH-HHHHcCC---CCCCcccccCC
Confidence                567999999998899999999999999999999999997542111000000000 1111100   00000111234


Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          246 LENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       246 ~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +.++.+++.+||+.||++|||+.|+++
T Consensus       244 s~~~~~li~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          244 SQEAKDLIQGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             CHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred             CHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence            678999999999999999999999875

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=1.5e-41  Score=296.89  Aligned_cols=236  Identities=18%  Similarity=0.198  Sum_probs=186.4

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      -.++|.....+|.|+|  |.||++..      .++|.+..  ......+|++++.++ +||||+++++++.+.+..++||
T Consensus        20 ~~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~~avK~~~~--~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~   95 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSY--SVCKRCIHKATNMEFAVKIIDK--SKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT   95 (342)
T ss_dssp             HHHHEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEET--TTCCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred             ccccEEEEEEEeeCCC--EEEEEEEECCCCCEEEEEEEEc--ccCChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence            3567888899999999  99999822      12222222  334567899999888 6999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC----CcEEEeccccceec
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF----WTAKISDFGLAKLL  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~----~~~kl~d~g~~~~~  168 (274)
                      |||.+|+|.+++..  .+.+++..+..++.|++.||.|||+.   +++||||||+||++...    +.+||+|||++...
T Consensus        96 E~~~gg~L~~~i~~--~~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~  170 (342)
T 2qr7_A           96 ELMKGGELLDKILR--QKFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQL  170 (342)
T ss_dssp             CCCCSCBHHHHHHT--CTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEEC
T ss_pred             eCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccC
Confidence            99999999999985  45799999999999999999999999   99999999999998433    35999999998753


Q ss_pred             C-----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 S-----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 ~-----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                      .           ++.|+|||.+....++.++|+||||+++|+|++|..||...........+     .....+.   ...
T Consensus       171 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~-----~~i~~~~---~~~  242 (342)
T 2qr7_A          171 RAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEIL-----ARIGSGK---FSL  242 (342)
T ss_dssp             BCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHH-----HHHHHCC---CCC
T ss_pred             cCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHH-----HHHccCC---ccc
Confidence            2           56799999998878899999999999999999999999753222111111     1111111   111


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +.......+..+.+++.+||+.||++|||+.|+++
T Consensus       243 ~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~  277 (342)
T 2qr7_A          243 SGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR  277 (342)
T ss_dssp             CSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             CccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            11223455678999999999999999999999975

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=5.4e-42  Score=296.56  Aligned_cols=245  Identities=20%  Similarity=0.252  Sum_probs=195.6

Q ss_pred             hhhhhhHHHHhhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCCC---CCCcHHHHHHHHhcCCCCccc
Q 048314           11 WIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSPY---SPSRPLTLTSIVSRVSWTTDI   76 (274)
Q Consensus        11 ~~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv   76 (274)
                      .+...+.....++|...+.+|.|+|  |.||+|..           .++|......   ....+.+|+.++++++||||+
T Consensus        14 ~~~~~~~~~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~   91 (322)
T 1p4o_A           14 VYVPDEWEVAREKITMSRELGQGSF--GMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVV   91 (322)
T ss_dssp             CCCCCTTBCCGGGEEEEEEEEECSS--SEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBC
T ss_pred             ccChhhhcchhhheeeeeEeccCCc--eEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEe
Confidence            3455666777889999999999999  99998721           1222222211   123477999999999999999


Q ss_pred             eEeEEEEeCCcceEEEEeCCCCCHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCc
Q 048314           77 EVSSVAMRGSKPSTEAALDLPWDLAYIIFCSA--------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN  148 (274)
Q Consensus        77 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~n  148 (274)
                      ++++++.+.+..++||||+++|+|.+++....        ...+++..++.++.|++.||.|||+.   +++||||||+|
T Consensus        92 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~N  168 (322)
T 1p4o_A           92 RLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARN  168 (322)
T ss_dssp             CEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGG
T ss_pred             eeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccce
Confidence            99999999999999999999999999997531        14579999999999999999999999   99999999999


Q ss_pred             eEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCCh
Q 048314          149 ILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKP  214 (274)
Q Consensus       149 il~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~  214 (274)
                      |+++.++.+||+|||++....             ++.|+|||.+....++.++||||||+++|+|++ |..||....   
T Consensus       169 Ili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~---  245 (322)
T 1p4o_A          169 CMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS---  245 (322)
T ss_dssp             EEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC---
T ss_pred             EEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCC---
Confidence            999999999999999986432             456999999988889999999999999999999 888886431   


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          215 EEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .. ...    ........      ...+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       246 ~~-~~~----~~~~~~~~------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L  294 (322)
T 1p4o_A          246 NE-QVL----RFVMEGGL------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSI  294 (322)
T ss_dssp             HH-HHH----HHHHTTCC------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HH-HHH----HHHHcCCc------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            11 111    11111100      123445667899999999999999999999998864

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=2.8e-41  Score=286.13  Aligned_cols=229  Identities=15%  Similarity=0.117  Sum_probs=185.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-------HHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-------ALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-------~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .++|...+.+|.|+|  |.||++..       ++++... .....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus         8 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (277)
T 3f3z_A            8 NQYYTLENTIGRGSW--GEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVM   85 (277)
T ss_dssp             HHHEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhEEeeeEEeecCC--EEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEE
Confidence            567888999999999  99998821       1221111 1234566789999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEeccccceec-
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~d~g~~~~~-  168 (274)
                      ||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||++   +.++.++|+|||.+... 
T Consensus        86 e~~~~~~L~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~  160 (277)
T 3f3z_A           86 ELCTGGELFERVVH--KRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK  160 (277)
T ss_dssp             ECCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             eccCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence            99999999999986  45699999999999999999999999   99999999999999   78899999999998653 


Q ss_pred             ---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                               +++.|+|||.+.+ .++.++||||||+++|+|++|..||....   ......     .....       ..
T Consensus       161 ~~~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~---~~~~~~-----~~~~~-------~~  224 (277)
T 3f3z_A          161 PGKMMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPT---DSEVML-----KIREG-------TF  224 (277)
T ss_dssp             TTSCBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHH-----HHHHC-------CC
T ss_pred             CccchhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCC---HHHHHH-----HHHhC-------CC
Confidence                     2667999998865 48999999999999999999999996431   111110     00110       00


Q ss_pred             ccCH----HHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDK----KNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~----~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+.    ..+..+.+++.+||+.||++|||+.|+++
T Consensus       225 ~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~  261 (277)
T 3f3z_A          225 TFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALE  261 (277)
T ss_dssp             CCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             CCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            1222    24578999999999999999999999986

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=4.3e-41  Score=287.14  Aligned_cols=241  Identities=14%  Similarity=0.055  Sum_probs=185.6

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEE-EeCCcceEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVA-MRGSKPSTEA   92 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~   92 (274)
                      ..++|...+.+|.|+|  |.||+|.      ..++|........+.+.+|+.++++++|+|++..++++ .+.+..++||
T Consensus         7 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSF--GDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             ----CEEEEEEEECSS--SEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             cCCceEEeeeecCCCC--eEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence            3467888999999999  9999983      12233334445667799999999999998887777766 5677789999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEeccccceec-
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~d~g~~~~~-  168 (274)
                      ||+ +++|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||++   +.++.+||+|||++... 
T Consensus        85 e~~-~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~  159 (296)
T 4hgt_A           85 ELL-GPSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR  159 (296)
T ss_dssp             ECC-CCBHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred             Ecc-CCCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceecc
Confidence            999 8999999985 345699999999999999999999999   99999999999999   78899999999998643 


Q ss_pred             -----------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhh
Q 048314          169 -----------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRE  231 (274)
Q Consensus       169 -----------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  231 (274)
                                       +++.|+|||.+....++.++||||||+++|+|++|+.||................... ....
T Consensus       160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-~~~~  238 (296)
T 4hgt_A          160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKK-MSTP  238 (296)
T ss_dssp             CTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHH-HHSC
T ss_pred             CcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhccc-ccch
Confidence                             2567999999998899999999999999999999999997543222111111111000 0000


Q ss_pred             hhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          232 LNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...      .....+..+.+++.+||+.||++|||+.+|++.|
T Consensus       239 ~~~------~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l  275 (296)
T 4hgt_A          239 IEV------LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLF  275 (296)
T ss_dssp             HHH------HTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHH
T ss_pred             hhh------hhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence            000      1122357899999999999999999999998864

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=9.2e-42  Score=320.32  Aligned_cols=225  Identities=17%  Similarity=0.197  Sum_probs=182.3

Q ss_pred             ccCCCCCCCCcchhHHHH--------HHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR--------ALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~--------~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.||.|+|  |.||+|..        .++|.+..    ....+++.+|+++|++++|||||+++++|.+ +..++|||||
T Consensus       375 ~~LG~G~f--G~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~  451 (635)
T 4fl3_A          375 KELGSGNF--GTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMA  451 (635)
T ss_dssp             EEEEECSS--EEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECC
T ss_pred             CEeccCCC--EEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEcc
Confidence            36999999  99998821        12222221    1223568899999999999999999999864 5588999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      .+|+|.+++..  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++...      
T Consensus       452 ~~g~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~  526 (635)
T 4fl3_A          452 ELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY  526 (635)
T ss_dssp             TTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-----
T ss_pred             CCCCHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccc
Confidence            99999999976  45799999999999999999999999   99999999999999999999999999986532      


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                              +..|+|||++....++.++||||||+++|||++ |..||.....   . .+.    .....+      ....
T Consensus       527 ~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~---~-~~~----~~i~~~------~~~~  592 (635)
T 4fl3_A          527 KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG---S-EVT----AMLEKG------ERMG  592 (635)
T ss_dssp             --------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH---H-HHH----HHHHTT------CCCC
T ss_pred             ccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH---H-HHH----HHHHcC------CCCC
Confidence                    345999999998899999999999999999998 9999964311   1 111    111111      1113


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+..++.++.++|..||+.||++|||+++|+++|
T Consensus       593 ~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L  626 (635)
T 4fl3_A          593 CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL  626 (635)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            4556778999999999999999999999998865

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=5.2e-42  Score=291.30  Aligned_cols=234  Identities=15%  Similarity=0.149  Sum_probs=187.3

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ..++|...+.+|+|+|  |.||+|..         .++|.....   ...+.+.+|+.++++++||||+++++++.+ +.
T Consensus        10 ~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~   86 (281)
T 3cc6_A           10 AREDVVLNRILGEGFF--GEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EP   86 (281)
T ss_dssp             CGGGEEEEEEEEECSS--SEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SS
T ss_pred             cccceEEEEEEEecCC--eeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CC
Confidence            4578888999999999  99999831         222222221   123557789999999999999999999765 45


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+..
T Consensus        87 ~~~v~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  162 (281)
T 3cc6_A           87 TWIIMELYPYGELGHYLER-NKNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRY  162 (281)
T ss_dssp             CEEEEECCTTCBHHHHHHH-HTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGC
T ss_pred             CEEEEecCCCCCHHHHHHh-ccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCcc
Confidence            7999999999999999986 345699999999999999999999999   999999999999999999999999999865


Q ss_pred             cC------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          168 LS------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       168 ~~------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      ..            +..|+|||.+....++.++||||||+++|+|++ |+.||.......    ...    .....    
T Consensus       163 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~----~~~----~~~~~----  230 (281)
T 3cc6_A          163 IEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKD----VIG----VLEKG----  230 (281)
T ss_dssp             C---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGG----HHH----HHHHT----
T ss_pred             cccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHH----HHH----HHhcC----
Confidence            33            346999999988889999999999999999998 999996431111    000    00111    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .....+...++.+.+++.+||+.||++|||+.|+++.|
T Consensus       231 --~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L  268 (281)
T 3cc6_A          231 --DRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSL  268 (281)
T ss_dssp             --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --CCCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHH
Confidence              11123444567899999999999999999999998864

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=4.2e-42  Score=294.16  Aligned_cols=237  Identities=22%  Similarity=0.249  Sum_probs=185.3

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEe-
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR-   84 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-   84 (274)
                      ......|.....+|.|+|  |.||+|..         .++|.....   ...+.+.+|+.++++++||||+++++++.+ 
T Consensus        21 ~~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   98 (298)
T 3f66_A           21 GPSSLIVHFNEVIGRGHF--GCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRS   98 (298)
T ss_dssp             CGGGEEEEEEEEEEEETT--EEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCS
T ss_pred             CccceehhhcceeeecCC--ceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcC
Confidence            334456777889999999  99998831         112222211   122457799999999999999999999754 


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      ++..++||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||.
T Consensus        99 ~~~~~~v~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~  174 (298)
T 3f66_A           99 EGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGL  174 (298)
T ss_dssp             SSCCEEEEECCTTCBHHHHHHC-TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGG
T ss_pred             CCceEEEEeCCCCCCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECcccc
Confidence            5678999999999999999976 456689999999999999999999999   999999999999999999999999999


Q ss_pred             ceecC---------------CCCcCCCcccccCCCccccceeehhHhHHHHhhc-CCCccccCCChhhHHHHHHHHHHHh
Q 048314          165 AKLLS---------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICC-WENMEIDASKPEEIILTNWVYKCFI  228 (274)
Q Consensus       165 ~~~~~---------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g-~~p~~~~~~~~~~~~~~~~~~~~~~  228 (274)
                      +....               ++.|+|||.+....++.++|+||||+++|+|++| .+||.........    .   . ..
T Consensus       175 a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~----~---~-~~  246 (298)
T 3f66_A          175 ARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDIT----V---Y-LL  246 (298)
T ss_dssp             GCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHH----H---H-HH
T ss_pred             cccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHH----H---H-Hh
Confidence            86432               3469999999888899999999999999999995 4555432111110    0   0 00


Q ss_pred             hhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          229 NRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..      .....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       247 ~~------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L  286 (298)
T 3f66_A          247 QG------RRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRI  286 (298)
T ss_dssp             TT------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             cC------CCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            00      01123444567899999999999999999999999864

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=3.8e-41  Score=292.58  Aligned_cols=230  Identities=15%  Similarity=0.108  Sum_probs=181.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH---------HHHHHhcC------CCCCCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNS------PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      .++|.....||+|+|  |.||++..         .++|....      ......+.+|+.++++++||||+++++++.+.
T Consensus        16 ~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   93 (327)
T 3a62_A           16 PECFELLRVLGKGGY--GKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTG   93 (327)
T ss_dssp             GGGEEEEEEEEEETT--EEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECS
T ss_pred             HHHeEEEEEEEeCCC--EEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcC
Confidence            468888999999999  99997622         11222221      12345577899999999999999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      +..++||||+++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~  168 (327)
T 3a62_A           94 GKLYLILEYLSGGELFMQLER--EGIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLC  168 (327)
T ss_dssp             SCEEEEEECCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC
T ss_pred             CEEEEEEeCCCCCcHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCcc
Confidence            999999999999999999986  35689999999999999999999999   9999999999999999999999999988


Q ss_pred             eec-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          166 KLL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       166 ~~~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      +..           +++.|+|||.+....++.++|+||||+++|+|++|..||....   ... ...   . ....    
T Consensus       169 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~---~~~-~~~---~-i~~~----  236 (327)
T 3a62_A          169 KESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGEN---RKK-TID---K-ILKC----  236 (327)
T ss_dssp             ----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS---HHH-HHH---H-HHHT----
T ss_pred             cccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCC---HHH-HHH---H-HHhC----
Confidence            642           3678999999988889999999999999999999999996431   111 100   0 0110    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                         ....+...+..+.+++.+||+.||++||     ++.|+++
T Consensus       237 ---~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          237 ---KLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             ---CCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             ---CCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence               1124445667899999999999999999     7778875

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=3e-41  Score=295.72  Aligned_cols=232  Identities=18%  Similarity=0.161  Sum_probs=184.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .+.|...+.+|.|+|  |.||+|..      .++|.....     ...+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        53 ~~~y~~~~~lG~G~~--g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  130 (348)
T 1u5q_A           53 EKLFSDLREIGHGSF--GAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAW  130 (348)
T ss_dssp             HHHEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             hhheeeeeEEccCCC--EEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEE
Confidence            456888899999999  99998821      122222211     11235779999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      +||||+. |+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++... 
T Consensus       131 lv~e~~~-g~l~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~  205 (348)
T 1u5q_A          131 LVMEYCL-GSASDLLEV-HKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMA  205 (348)
T ss_dssp             EEEECCS-EEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSS
T ss_pred             EEEecCC-CCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecC
Confidence            9999997 689888865 346799999999999999999999999   9999999999999999999999999998654 


Q ss_pred             ------CCCCcCCCcccc---cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          169 ------SDKGCMAPECYK---RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       169 ------~~~~~~ape~~~---~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                            +++.|+|||.+.   ...++.++||||||+++|||++|..||....   ....+    ......      ..+.
T Consensus       206 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~---~~~~~----~~~~~~------~~~~  272 (348)
T 1u5q_A          206 PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN---AMSAL----YHIAQN------ESPA  272 (348)
T ss_dssp             SBCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC---HHHHH----HHHHHS------CCCC
T ss_pred             CCCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC---hHHHH----HHHHhc------CCCC
Confidence                  367899999884   4578899999999999999999999996431   11101    111110      1111


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+...+..+.+++.+||+.||++|||+.++++
T Consensus       273 ~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~  305 (348)
T 1u5q_A          273 LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK  305 (348)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence            223445678999999999999999999999986

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=294.82  Aligned_cols=245  Identities=16%  Similarity=0.115  Sum_probs=191.9

Q ss_pred             hhhhhhhHHHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhc-CCCCCCcHHHHHHHHhcC-CCCccceEeEE
Q 048314           10 AWIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN-SPYSPSRPLTLTSIVSRV-SWTTDIEVSSV   81 (274)
Q Consensus        10 ~~~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~l~~~   81 (274)
                      .-+...++....++|...+.+|.|+|  |.||+|..      .++|... .....+.+.+|+.+++++ +||||++++++
T Consensus        12 ~~~~~~~l~~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~   89 (326)
T 2x7f_A           12 DEIDLSALRDPAGIFELVELVGNGTY--GQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGA   89 (326)
T ss_dssp             ----CCCCCCCTTTEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEE
T ss_pred             hhccchhccCCCCcEEEEEEeccCCC--EEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeE
Confidence            34667777888899999999999999  99999822      2223222 224456778999999999 79999999999


Q ss_pred             EEe------CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 048314           82 AMR------GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW  155 (274)
Q Consensus        82 ~~~------~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~  155 (274)
                      +..      .+..++||||+++|+|.+++.......+++..++.++.|++.||.|||+.   +++|+||||+||+++.++
T Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~  166 (326)
T 2x7f_A           90 FIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENA  166 (326)
T ss_dssp             EEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTC
T ss_pred             EeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCC
Confidence            976      46789999999999999999875556799999999999999999999999   999999999999999999


Q ss_pred             cEEEeccccceec-----------CCCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHH
Q 048314          156 TAKISDFGLAKLL-----------SDKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL  219 (274)
Q Consensus       156 ~~kl~d~g~~~~~-----------~~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~  219 (274)
                      .++|+|||++...           +++.|+|||.+.     ...++.++||||||+++|+|++|..||....   ....+
T Consensus       167 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~  243 (326)
T 2x7f_A          167 EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH---PMRAL  243 (326)
T ss_dssp             CEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSC---HHHHH
T ss_pred             CEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCc---HHHHH
Confidence            9999999988643           256799999986     4568899999999999999999999996431   11100


Q ss_pred             HHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .    .. ...     ..+...+...+..+.+++.+||+.||++|||+.++++
T Consensus       244 ~----~~-~~~-----~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          244 F----LI-PRN-----PAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             H----HH-HHS-----CCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             H----Hh-hcC-----ccccCCccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            0    00 000     0111123344678999999999999999999999986

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=4.9e-42  Score=294.10  Aligned_cols=242  Identities=15%  Similarity=0.202  Sum_probs=186.7

Q ss_pred             hhccccccCCCCCCCCcchhHHH----------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeC--C
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM----------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--S   86 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~----------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~   86 (274)
                      +.|...+.+|.|+|  |.||++.          ..++|.....   ...+.+.+|+.++++++||||+++++++.+.  .
T Consensus        21 ~~~~~~~~lg~G~~--g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   98 (302)
T 4e5w_A           21 RFLKRIRDLGEGHF--GKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGN   98 (302)
T ss_dssp             GGEEEEEEEEECSS--EEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---C
T ss_pred             hhhhhhhccCCCCc--eEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCc
Confidence            45777889999999  9999874          1122222211   2235578999999999999999999999876  6


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++.
T Consensus        99 ~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  174 (302)
T 4e5w_A           99 GIKLIMEFLPSGSLKEYLPK-NKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTK  174 (302)
T ss_dssp             CEEEEEECCTTCBHHHHHHH-HTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             eEEEEEEeCCCCcHHHHHHh-ccccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECcccccc
Confidence            68999999999999999965 345699999999999999999999999   99999999999999999999999999987


Q ss_pred             ecC--------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH---HHhh
Q 048314          167 LLS--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK---CFIN  229 (274)
Q Consensus       167 ~~~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~---~~~~  229 (274)
                      ...              +..|+|||.+....++.++||||||+++|+|++|..|+....    .. .......   ....
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~-~~~~~~~~~~~~~~  249 (302)
T 4e5w_A          175 AIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPM----AL-FLKMIGPTHGQMTV  249 (302)
T ss_dssp             ECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH----HH-HHHHHCSCCGGGHH
T ss_pred             cccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchh----hH-HhhccCCcccccCH
Confidence            543              334999999988889999999999999999999999874320    00 0000000   0000


Q ss_pred             hhhhhhh-c--CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          230 RELNKLV-R--GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       230 ~~~~~~~-~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ......+ .  ....+...+..+.+++.+||+.||.+|||+.++++.|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L  297 (302)
T 4e5w_A          250 TRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGF  297 (302)
T ss_dssp             HHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence            0011111 1  1134556678899999999999999999999999875

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=1.2e-42  Score=302.06  Aligned_cols=240  Identities=18%  Similarity=0.192  Sum_probs=191.0

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEE
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSV   81 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~   81 (274)
                      ..-..++|...+.+|.|+|  |.||++..           .++|.....   ...+.+.+|+.+++++ +||||++++++
T Consensus        41 ~~~~~~~~~~~~~lG~G~~--g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~  118 (333)
T 2i1m_A           41 WEFPRNNLQFGKTLGAGAF--GKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGA  118 (333)
T ss_dssp             GBCCTTSEEEEEEEEECSS--EEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccCCHHHceeeeEeccCCC--cceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence            3344567888899999999  99999831           222222222   1234577999999999 89999999999


Q ss_pred             EEeCCcceEEEEeCCCCCHHHHHHhCC------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 048314           82 AMRGSKPSTEAALDLPWDLAYIIFCSA------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  149 (274)
Q Consensus        82 ~~~~~~~~lv~e~~~~gsL~~~l~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  149 (274)
                      +.+.+..++||||+++|+|.+++....            ...+++..++.++.|++.||.|||+.   +++|+||||+||
T Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NI  195 (333)
T 2i1m_A          119 CTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNV  195 (333)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGC
T ss_pred             EecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceE
Confidence            999999999999999999999997531            34689999999999999999999999   999999999999


Q ss_pred             EEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChh
Q 048314          150 LMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPE  215 (274)
Q Consensus       150 l~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~  215 (274)
                      +++.++.++|+|||++....             +..|+|||.+....++.++||||||+++|+|++ |..||........
T Consensus       196 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~  275 (333)
T 2i1m_A          196 LLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSK  275 (333)
T ss_dssp             EEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHH
T ss_pred             EECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHH
Confidence            99999999999999987432             346999999988889999999999999999998 8899865422211


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          216 EIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                         +..    .....     . ....+...+..+.+++.+||+.||.+|||+.||++.|
T Consensus       276 ---~~~----~~~~~-----~-~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L  321 (333)
T 2i1m_A          276 ---FYK----LVKDG-----Y-QMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFL  321 (333)
T ss_dssp             ---HHH----HHHHT-----C-CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ---HHH----HHhcC-----C-CCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHH
Confidence               111    11110     0 1123344567899999999999999999999998864

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=6.9e-42  Score=297.81  Aligned_cols=235  Identities=17%  Similarity=0.176  Sum_probs=188.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-------------HHHHHhcCCC---CCCcHHHHHHHHhcC-CCCccceEeEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-------------ALMATVNSPY---SPSRPLTLTSIVSRV-SWTTDIEVSSVAM   83 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-------------~~~~~~~~~~---~~~~~~~e~~~l~~l-~h~niv~l~~~~~   83 (274)
                      .++|...+.+|.|+|  |.||++..             .++|......   ..+.+.+|+.+++++ +||||+++++++.
T Consensus        34 ~~~y~~~~~lG~G~~--g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~  111 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAF--GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT  111 (334)
T ss_dssp             GGGEEEEEEEEECSS--CEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             HhHeEEeeEEeecCc--eeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc
Confidence            467888899999999  99998832             1122222211   123467999999999 8999999999999


Q ss_pred             eCCcceEEEEeCCCCCHHHHHHhCCC--------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 048314           84 RGSKPSTEAALDLPWDLAYIIFCSAE--------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  149 (274)
Q Consensus        84 ~~~~~~lv~e~~~~gsL~~~l~~~~~--------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  149 (274)
                      +.+..++||||+++|+|.+++.....              ..+++..++.++.|++.||.|||+.   +++|+||||+||
T Consensus       112 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NI  188 (334)
T 2pvf_A          112 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNV  188 (334)
T ss_dssp             SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGE
T ss_pred             cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceE
Confidence            99999999999999999999986431              2489999999999999999999999   999999999999


Q ss_pred             EEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChh
Q 048314          150 LMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPE  215 (274)
Q Consensus       150 l~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~  215 (274)
                      +++.++.+||+|||++....             ++.|+|||.+....++.++||||||+++|+|++ |..||....   .
T Consensus       189 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~---~  265 (334)
T 2pvf_A          189 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP---V  265 (334)
T ss_dssp             EECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC---H
T ss_pred             EEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCC---H
Confidence            99999999999999987543             345999999988889999999999999999999 999996431   1


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          216 EIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      . .+..    ......      ....+...+..+.+++.+||+.||.+|||+.|+++.|
T Consensus       266 ~-~~~~----~~~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  313 (334)
T 2pvf_A          266 E-ELFK----LLKEGH------RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  313 (334)
T ss_dssp             H-HHHH----HHHHTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             H-HHHH----HHhcCC------CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            1 1111    111110      1124445667899999999999999999999998764

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.7e-41  Score=288.70  Aligned_cols=235  Identities=18%  Similarity=0.138  Sum_probs=185.8

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ..++|.....+|.|+|  |.||+|..      .++|........+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus        27 ~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  104 (314)
T 3com_A           27 PEEVFDVLEKLGEGSY--GSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME  104 (314)
T ss_dssp             ---CEEEEEECC------CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhheeeccCCC--eEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence            3457888899999999  99999821      223334444456778899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      |+++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+....    
T Consensus       105 ~~~~~~L~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  180 (314)
T 3com_A          105 YCGAGSVSDIIRL-RNKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA  180 (314)
T ss_dssp             CCTTEEHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS
T ss_pred             cCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc
Confidence            9999999999974 346799999999999999999999999   99999999999999999999999999986432    


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                             ++.|+|||.+....++.++||||||+++|+|++|..||....   .....    .. ......    .....+
T Consensus       181 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~----~~-~~~~~~----~~~~~~  248 (314)
T 3com_A          181 KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIH---PMRAI----FM-IPTNPP----PTFRKP  248 (314)
T ss_dssp             CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSC---HHHHH----HH-HHHSCC----CCCSSG
T ss_pred             ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCC---hHHHH----HH-HhcCCC----cccCCc
Confidence                   556999999998889999999999999999999999996431   11000    00 000000    000123


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+..+.+++.+||+.||.+|||+.++++
T Consensus       249 ~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          249 ELWSDNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             GGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             ccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            345678999999999999999999999976

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=2.6e-41  Score=301.34  Aligned_cols=236  Identities=14%  Similarity=0.096  Sum_probs=180.7

Q ss_pred             hhcccc-ccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHh-cCCCCccceEeEEEEe----CCcce
Q 048314           22 RNFCRS-SLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVS-RVSWTTDIEVSSVAMR----GSKPS   89 (274)
Q Consensus        22 ~~f~~~-~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~-~l~h~niv~l~~~~~~----~~~~~   89 (274)
                      ++|... .+||.|+|  |.||++..      .++|.+.   ....+.+|+.++. ..+||||+++++++..    ....+
T Consensus        61 ~~y~~~~~~LG~G~~--g~V~~~~~~~~~~~vAiK~~~---~~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~  135 (400)
T 1nxk_A           61 DDYKVTSQVLGLGIN--GKVLQIFNKRTQEKFALKMLQ---DCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL  135 (400)
T ss_dssp             GTEEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEE---CSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             ccceeccceeeeccC--eEEEEEEECCCCCEEEEEEeC---cchhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence            445443 68999999  99999822      1222222   2345678999875 4579999999999865    56789


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEeccccce
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGLAK  166 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~d~g~~~  166 (274)
                      +|||||++|+|.+++.......+++..++.++.|++.||.|||+.   +|+||||||+||+++.   ++.+||+|||+++
T Consensus       136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~  212 (400)
T 1nxk_A          136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAK  212 (400)
T ss_dssp             EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTCE
T ss_pred             EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEeccccc
Confidence            999999999999999875455799999999999999999999999   9999999999999987   7899999999987


Q ss_pred             ecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          167 LLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       167 ~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      ...          ++.|+|||++....++.++|||||||++|+|++|..||.............    .....+   ...
T Consensus       213 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~----~~i~~~---~~~  285 (400)
T 1nxk_A          213 ETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMK----TRIRMG---QYE  285 (400)
T ss_dssp             ECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHH----HHHHHT---CCC
T ss_pred             ccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHH----HHHHcC---ccc
Confidence            543          667999999998899999999999999999999999997542211100000    001111   000


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+.......+.++.+++.+||+.||++|||+.|+++
T Consensus       286 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~  321 (400)
T 1nxk_A          286 FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  321 (400)
T ss_dssp             CCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            111112345678999999999999999999999986

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1e-41  Score=291.41  Aligned_cols=233  Identities=19%  Similarity=0.253  Sum_probs=184.1

Q ss_pred             hccccccCCCCCCCCcchhHHH---------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc-e
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM---------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP-S   89 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~---------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~-~   89 (274)
                      .|...+.+|.|+|  |.||+|.         ..++|.....   ...+.+.+|+.++++++||||+++++++.+.+.. +
T Consensus        22 ~~~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   99 (298)
T 3pls_A           22 VTHSDRVIGKGHF--GVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPH   99 (298)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred             EEccCceeccCCC--ceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcE
Confidence            4445688999999  9999883         1222222221   1234577999999999999999999999776554 9


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +||||+.+|+|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++....
T Consensus       100 ~v~e~~~~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~  175 (298)
T 3pls_A          100 VLLPYMCHGDLLQFIRS-PQRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDIL  175 (298)
T ss_dssp             EEECCCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTT
T ss_pred             EEEecccCCCHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCccccc
Confidence            99999999999999986 456789999999999999999999999   99999999999999999999999999986432


Q ss_pred             ---------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          170 ---------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       170 ---------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                                     +..|+|||.+....++.++||||||+++|+|++|..|+.........   ..    .....    
T Consensus       176 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~---~~----~~~~~----  244 (298)
T 3pls_A          176 DREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDL---TH----FLAQG----  244 (298)
T ss_dssp             TGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGH---HH----HHHTT----
T ss_pred             CCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHH---HH----HhhcC----
Confidence                           35699999999889999999999999999999976665433221111   00    00000    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .....+...+..+.+++.+||+.||.+|||+.++++.|
T Consensus       245 --~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l  282 (298)
T 3pls_A          245 --RRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEV  282 (298)
T ss_dssp             --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --CCCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence              01123445567899999999999999999999998864

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=2.1e-41  Score=291.84  Aligned_cols=239  Identities=18%  Similarity=0.233  Sum_probs=183.7

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHH---------HHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEE
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCM---------RALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAM   83 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~---------~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~   83 (274)
                      +....++|...+.+|.|+|  |.||+|.         ..++|.....    ...+.+.+|+.++++++||||+++++++.
T Consensus        29 ~~~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  106 (313)
T 3brb_A           29 VVIDRNLLILGKILGEGEF--GSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI  106 (313)
T ss_dssp             TBCCGGGEEEEEEEEC-CC--CCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEE
T ss_pred             cccCHHHeeeccceeecCC--eEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEe
Confidence            3344567777889999999  9999872         1222222211    11245779999999999999999999997


Q ss_pred             eCC-----cceEEEEeCCCCCHHHHHHhC----CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC
Q 048314           84 RGS-----KPSTEAALDLPWDLAYIIFCS----AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  154 (274)
Q Consensus        84 ~~~-----~~~lv~e~~~~gsL~~~l~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  154 (274)
                      +.+     ..++||||+++|+|.+++...    ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.+
T Consensus       107 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~  183 (313)
T 3brb_A          107 EMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDD  183 (313)
T ss_dssp             C-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTT
T ss_pred             eccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCC
Confidence            754     359999999999999999542    335699999999999999999999999   99999999999999999


Q ss_pred             CcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHH
Q 048314          155 WTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILT  220 (274)
Q Consensus       155 ~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~  220 (274)
                      +.+||+|||++....             ++.|+|||.+....++.++||||||+++|+|++ |..||.......    ..
T Consensus       184 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~----~~  259 (313)
T 3brb_A          184 MTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE----MY  259 (313)
T ss_dssp             SCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG----HH
T ss_pred             CcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHH----HH
Confidence            999999999986532             346999999998889999999999999999999 888886431111    00


Q ss_pred             HHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          221 NWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .    ......      ....+...+..+.+++.+||+.||++|||+.++++.|
T Consensus       260 ~----~~~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L  303 (313)
T 3brb_A          260 D----YLLHGH------RLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQL  303 (313)
T ss_dssp             H----HHHTTC------CCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             H----HHHcCC------CCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            0    001100      1123445667899999999999999999999998864

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=7.2e-41  Score=285.89  Aligned_cols=240  Identities=14%  Similarity=0.057  Sum_probs=188.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEE-EeCCcceEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVA-MRGSKPSTEAA   93 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~e   93 (274)
                      .++|...+.+|.|+|  |.||+|.      ..++|........+.+.+|+.++++++|+|++..++++ .+.+..++|||
T Consensus         8 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSF--GDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   85 (296)
T ss_dssp             TTTEEEEEEEEEETT--EEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             ccEEEEEEEEccCCC--eEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence            467888999999999  9999983      12233344445567789999999999998877777666 56777899999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEeccccceec--
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~d~g~~~~~--  168 (274)
                      |+ +++|.+++.. ....+++..++.++.|++.||.|||++   +++|+||||+||++   +.++.+||+|||.+...  
T Consensus        86 ~~-~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~  160 (296)
T 3uzp_A           86 LL-GPSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD  160 (296)
T ss_dssp             CC-CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred             ec-CCCHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccc
Confidence            99 8999999985 345799999999999999999999999   99999999999999   47889999999998642  


Q ss_pred             ----------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          169 ----------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       169 ----------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                                      +++.|+|||.+....++.++||||||+++|+|++|+.||...........+....... .....
T Consensus       161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-~~~~~  239 (296)
T 3uzp_A          161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKK-MSTPI  239 (296)
T ss_dssp             TTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHH-HHSCH
T ss_pred             cccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccc-cCCch
Confidence                            2567999999998889999999999999999999999997542222111111111100 00000


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .      ......+..+.+++.+||+.||++|||+.+|++.|
T Consensus       240 ~------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  275 (296)
T 3uzp_A          240 E------VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLF  275 (296)
T ss_dssp             H------HHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHH
T ss_pred             H------HHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHH
Confidence            0      01123457899999999999999999999998864

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.5e-42  Score=290.67  Aligned_cols=233  Identities=17%  Similarity=0.176  Sum_probs=186.1

Q ss_pred             hhhccccc-cCCCCCCCCcchhHHHH--------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           21 LRNFCRSS-LNDRNSPRSKSVWSCMR--------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~~-~~g~g~~~~g~vy~~~~--------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      .++|.... .+|.|+|  |.||+|..        .++|.....   ...+.+.+|+.++++++||||+++++++ +.+..
T Consensus         8 ~~~~~i~~~~lg~G~~--g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~   84 (287)
T 1u59_A            8 RDNLLIADIELGCGNF--GSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEAL   84 (287)
T ss_dssp             GGGEEEEEEEEECCTT--EEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSE
T ss_pred             HHHhhhhhccccccCc--eeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCc
Confidence            34455544 8999999  99998831        112222221   1234577999999999999999999999 55679


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||||+++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++...
T Consensus        85 ~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~  160 (287)
T 1u59_A           85 MLVMEMAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKAL  160 (287)
T ss_dssp             EEEEECCTTEEHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             EEEEEeCCCCCHHHHHHh-CCccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeee
Confidence            999999999999999975 445699999999999999999999999   9999999999999999999999999998754


Q ss_pred             C--------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          169 S--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       169 ~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      .              +..|+|||.+....++.++|+||||+++|+|++ |..||......    .+..    .....   
T Consensus       161 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~----~~~~----~i~~~---  229 (287)
T 1u59_A          161 GADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP----EVMA----FIEQG---  229 (287)
T ss_dssp             TTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH----HHHH----HHHTT---
T ss_pred             ccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH----HHHH----HHhcC---
Confidence            3              356999999988888999999999999999998 99999644211    1111    11111   


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                         .....+...+..+.+++.+||+.||++|||+.++++.|
T Consensus       230 ---~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l  267 (287)
T 1u59_A          230 ---KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  267 (287)
T ss_dssp             ---CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             ---CcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence               01134556678999999999999999999999998864

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=1.9e-41  Score=292.23  Aligned_cols=234  Identities=15%  Similarity=0.173  Sum_probs=181.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCC-----CCcHHHHHHHHhcCCCCccceEeEEEEeCCc--
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYS-----PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK--   87 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~-----~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~--   87 (274)
                      .++|...+.+|.|+|  |.||++.      ..++|.+.....     .+.+.+|+.++++++||||+++++++.....  
T Consensus        11 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   88 (311)
T 3ork_A           11 SDRYELGEILGFGGM--SEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAG   88 (311)
T ss_dssp             TTTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTE
T ss_pred             cCcEEEEEEEccCCC--EEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCC
Confidence            467888899999999  9999883      122232222211     1346799999999999999999999876544  


Q ss_pred             --ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           88 --PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        88 --~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                        .++||||+++++|.+++..  .+.+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||++
T Consensus        89 ~~~~lv~e~~~g~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a  163 (311)
T 3ork_A           89 PLPYIVMEYVDGVTLRDIVHT--EGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIA  163 (311)
T ss_dssp             EEEEEEEECCCEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC
T ss_pred             cccEEEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCc
Confidence              4999999999999999986  35799999999999999999999999   9999999999999999999999999998


Q ss_pred             eec--------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhh
Q 048314          166 KLL--------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRE  231 (274)
Q Consensus       166 ~~~--------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  231 (274)
                      ...              +++.|+|||.+....++.++||||||+++|+|++|..||....   ......    .......
T Consensus       164 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~---~~~~~~----~~~~~~~  236 (311)
T 3ork_A          164 RAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS---PVSVAY----QHVREDP  236 (311)
T ss_dssp             ------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS---HHHHHH----HHHHCCC
T ss_pred             ccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC---hHHHHH----HHhcCCC
Confidence            642              3678999999998889999999999999999999999996431   111000    1000000


Q ss_pred             hhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          232 LNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..    +.......+..+.+++.+||+.||++||+..+++.
T Consensus       237 ~~----~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~  273 (311)
T 3ork_A          237 IP----PSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR  273 (311)
T ss_dssp             CC----HHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred             CC----cccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHH
Confidence            00    00112234678999999999999999998887764

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.7e-41  Score=292.80  Aligned_cols=241  Identities=17%  Similarity=0.107  Sum_probs=185.5

Q ss_pred             hHHHHhhhccccccCCCCCCCCcchhHHH-------HHHHH----Hhc--CCCCCCcHHHHHHHHhcCCCCccceEeEEE
Q 048314           16 SLCTKLRNFCRSSLNDRNSPRSKSVWSCM-------RALMA----TVN--SPYSPSRPLTLTSIVSRVSWTTDIEVSSVA   82 (274)
Q Consensus        16 ~l~~~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~~----~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~   82 (274)
                      .+....++|.....+|.|+|  |.||++.       +++|.    ...  .....+.+.+|+.++++++||||+++++++
T Consensus        20 ~~~~~~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~   97 (345)
T 3hko_A           20 SLLELQKKYHLKGAIGQGSY--GVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVY   97 (345)
T ss_dssp             CHHHHHHHEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             hhhhhhhheeecceeeecCC--eEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhh
Confidence            35566788999999999999  9999881       11111    111  223345678999999999999999999999


Q ss_pred             EeCCcceEEEEeCCCCCHHHHHHhCC--------------------------------------CCCCCHHHHHHHHHHH
Q 048314           83 MRGSKPSTEAALDLPWDLAYIIFCSA--------------------------------------ERNPYWNQRVRIALDV  124 (274)
Q Consensus        83 ~~~~~~~lv~e~~~~gsL~~~l~~~~--------------------------------------~~~l~~~~~~~~~~~i  124 (274)
                      .+.+..++||||+++|+|.+++....                                      ...+++..++.++.|+
T Consensus        98 ~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi  177 (345)
T 3hko_A           98 EDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQI  177 (345)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHH
Confidence            99999999999999999999995210                                      1124677888999999


Q ss_pred             HHHHHHHhcCCCCCcccCCCCCCceEEcCCC--cEEEeccccceec---------------CCCCcCCCccccc--CCCc
Q 048314          125 AKGILYLHDECEPPILHCDIKPQNILMDEFW--TAKISDFGLAKLL---------------SDKGCMAPECYKR--TPIS  185 (274)
Q Consensus       125 ~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~--~~kl~d~g~~~~~---------------~~~~~~ape~~~~--~~~~  185 (274)
                      +.||.|||+.   +++|+||||+||+++.++  .+||+|||++...               +++.|+|||.+..  ..++
T Consensus       178 ~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  254 (345)
T 3hko_A          178 FSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYG  254 (345)
T ss_dssp             HHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCC
T ss_pred             HHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCC
Confidence            9999999999   999999999999998666  8999999998643               2567999999865  5788


Q ss_pred             cccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCC
Q 048314          186 VKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRP  265 (274)
Q Consensus       186 ~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp  265 (274)
                      .++||||||+++|+|++|..||....   .......    . ....   ...+.+.....+..+.+++.+||+.||.+||
T Consensus       255 ~~~DiwslG~il~el~~g~~pf~~~~---~~~~~~~----~-~~~~---~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  323 (345)
T 3hko_A          255 PKCDAWSAGVLLHLLLMGAVPFPGVN---DADTISQ----V-LNKK---LCFENPNYNVLSPLARDLLSNLLNRNVDERF  323 (345)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHHH----H-HHCC---CCTTSGGGGGSCHHHHHHHHHHSCSCTTTSC
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCCCCC---hHHHHHH----H-Hhcc---cccCCcccccCCHHHHHHHHHHcCCChhHCC
Confidence            99999999999999999999996431   1111110    0 0000   0001112223467899999999999999999


Q ss_pred             ChhhHHh
Q 048314          266 SMKCVVM  272 (274)
Q Consensus       266 s~~evl~  272 (274)
                      |+.|+++
T Consensus       324 s~~~~l~  330 (345)
T 3hko_A          324 DAMRALQ  330 (345)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHhc
Confidence            9999986

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1e-40  Score=306.97  Aligned_cols=236  Identities=19%  Similarity=0.205  Sum_probs=189.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-------HHH----HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-------RAL----MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-------~~~----~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...++||+|+|  |.||++.       +++    +.........+.+.+|+.++++++||||+++++++.+.+..+
T Consensus       184 ~~~f~~~~~LG~G~f--G~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~  261 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGF--GEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLC  261 (543)
T ss_dssp             GGGEEEEEEEEECSS--SEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhheEEEEEEeeCCC--eEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEE
Confidence            367777889999999  9999881       111    111222234456789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           90 TEAALDLPWDLAYIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      +||||+++|+|.+++....  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus       262 lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~  338 (543)
T 3c4z_A          262 LVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVE  338 (543)
T ss_dssp             EEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeee
Confidence            9999999999999998643  34699999999999999999999999   999999999999999999999999999864


Q ss_pred             c-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          168 L-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       168 ~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      .           +++.|+|||++.+..++.++|+|||||++|||++|..||...........+...    ...       
T Consensus       339 ~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~----i~~-------  407 (543)
T 3c4z_A          339 LKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQR----VLE-------  407 (543)
T ss_dssp             CCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHH----HHH-------
T ss_pred             ccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHH----Hhh-------
Confidence            3           367899999999989999999999999999999999999754222111111111    000       


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCCh-----hhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSM-----KCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~-----~evl~  272 (274)
                      .....+...+..+.+++.+||+.||++||++     .++++
T Consensus       408 ~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~  448 (543)
T 3c4z_A          408 QAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT  448 (543)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred             cccCCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence            1113455667889999999999999999975     55653

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=3e-41  Score=286.81  Aligned_cols=234  Identities=15%  Similarity=0.139  Sum_probs=185.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      .++|.....+|.|+|  |.||++..      .++|.....    ...+.+.+|+.++++++||||+++++++.+.+..++
T Consensus         5 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   82 (284)
T 3kk8_A            5 SDNYDVKEELGKGAF--SVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL   82 (284)
T ss_dssp             TTTEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhhhhhhhhhcCcCC--eEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEE
Confidence            467888999999999  99999821      112222111    122456789999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc---EEEecccccee
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT---AKISDFGLAKL  167 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~---~kl~d~g~~~~  167 (274)
                      ||||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.   ++|+|||.+..
T Consensus        83 v~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~  157 (284)
T 3kk8_A           83 VFDLVTGGELFEDIVA--REFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIE  157 (284)
T ss_dssp             EECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             EEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEE
Confidence            9999999999999886  35699999999999999999999999   9999999999999976554   99999999864


Q ss_pred             cC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          168 LS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       168 ~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                      ..          ++.|+|||.+....++.++||||||+++|+|++|..||....   .. ....    .......   -.
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~---~~-~~~~----~~~~~~~---~~  226 (284)
T 3kk8_A          158 VNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED---QH-RLYA----QIKAGAY---DY  226 (284)
T ss_dssp             CCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS---HH-HHHH----HHHHTCC---CC
T ss_pred             cccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCc---hh-HHHH----HHHhccc---cC
Confidence            33          567999999998889999999999999999999999996431   11 1111    1111110   01


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +.......+..+.+++.+||+.||++|||+.|+++
T Consensus       227 ~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          227 PSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK  261 (284)
T ss_dssp             CTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CchhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            11122345678999999999999999999999986

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=6e-41  Score=285.67  Aligned_cols=234  Identities=18%  Similarity=0.170  Sum_probs=182.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|...+.+|.|+|  |.||++.      ..++|...   .....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus        21 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   98 (285)
T 3is5_A           21 DDLFIFKRKLGSGAF--GDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIV   98 (285)
T ss_dssp             HHHEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhheeecceeccCCC--eEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEE
Confidence            467888899999999  9999872      11222211   122345678999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEeccccce
Q 048314           92 AALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAK  166 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~d~g~~~  166 (274)
                      |||+++|+|.+++...  ....+++..++.++.|++.||.|||+.   +++|+||||+||++   +.++.++|+|||++.
T Consensus        99 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~  175 (285)
T 3is5_A           99 METCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAE  175 (285)
T ss_dssp             ECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCC
T ss_pred             EEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecce
Confidence            9999999999999653  235799999999999999999999999   99999999999999   456789999999986


Q ss_pred             ecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          167 LLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       167 ~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      ...          ++.|+|||.+. ..++.++||||||+++|+|++|..||....   ... ...   . ....   ...
T Consensus       176 ~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~---~~~-~~~---~-~~~~---~~~  243 (285)
T 3is5_A          176 LFKSDEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTS---LEE-VQQ---K-ATYK---EPN  243 (285)
T ss_dssp             C----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSS---HHH-HHH---H-HHHC---CCC
T ss_pred             ecCCcccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCC---HHH-HHh---h-hccC---Ccc
Confidence            432          56799999875 467899999999999999999999996431   110 000   0 0000   000


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .. ......++.+.+++.+||+.||++|||+.|+++
T Consensus       244 ~~-~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          244 YA-VECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             CC-C--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             cc-cccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            00 011123567889999999999999999999986

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=7.1e-41  Score=288.81  Aligned_cols=238  Identities=16%  Similarity=0.140  Sum_probs=182.1

Q ss_pred             hhccc-cccCCCCCCCCcchhHHH------HHHHHHhcCC--CCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEE
Q 048314           22 RNFCR-SSLNDRNSPRSKSVWSCM------RALMATVNSP--YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        22 ~~f~~-~~~~g~g~~~~g~vy~~~------~~~~~~~~~~--~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv   91 (274)
                      +.|.. .+.+|+|+|  |.||++.      ..++|.+...  ...+.+.+|+.++.++ +||||+++++++.+.+..++|
T Consensus        12 ~~y~i~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv   89 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAH--ARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLV   89 (316)
T ss_dssp             TSCEECCCCCCCCSS--EEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eeEEecCceecCCce--EEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEE
Confidence            34554 478999999  9999982      1223333222  2345578999999985 699999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc---EEEeccccceec
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT---AKISDFGLAKLL  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~---~kl~d~g~~~~~  168 (274)
                      |||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.   +||+|||++...
T Consensus        90 ~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~  164 (316)
T 2ac3_A           90 FEKMRGGSILSHIHK--RRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGI  164 (316)
T ss_dssp             EECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC--
T ss_pred             EEcCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCcccc
Confidence            999999999999986  35699999999999999999999999   9999999999999987765   999999987542


Q ss_pred             ------------------CCCCcCCCccccc-----CCCccccceeehhHhHHHHhhcCCCccccCCChhhHH-------
Q 048314          169 ------------------SDKGCMAPECYKR-----TPISVKADVYGYGIVLLETICCWENMEIDASKPEEII-------  218 (274)
Q Consensus       169 ------------------~~~~~~ape~~~~-----~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~-------  218 (274)
                                        +++.|+|||.+..     ..++.++||||||+++|+|++|..||...........       
T Consensus       165 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~  244 (316)
T 2ac3_A          165 KLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPA  244 (316)
T ss_dssp             -----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHH
T ss_pred             ccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchh
Confidence                              3667999999875     4578899999999999999999999975422110000       


Q ss_pred             HHHHHHHHHhhhhhhhhhcCCccCH----HHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          219 LTNWVYKCFINRELNKLVRGTEVDK----KNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .............       ...+.    ..+..+.+++.+||+.||++|||+.|+++.
T Consensus       245 ~~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  296 (316)
T 2ac3_A          245 CQNMLFESIQEGK-------YEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH  296 (316)
T ss_dssp             HHHHHHHHHHHCC-------CCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHHHHhccC-------cccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            0000011111110       01222    245689999999999999999999999873

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=4.5e-42  Score=298.04  Aligned_cols=245  Identities=18%  Similarity=0.157  Sum_probs=187.4

Q ss_pred             hhccccccCCCCCCCCcchhHHHH----------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEE--eCCc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR----------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAM--RGSK   87 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~----------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~   87 (274)
                      ++|...+.+|.|+|  |.||++..          .++|.....  ...+.+.+|+.++++++||||+++++++.  +...
T Consensus        23 ~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~  100 (327)
T 3lxl_A           23 RHLKYISQLGKGNF--GSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQS  100 (327)
T ss_dssp             GGEEEEEEEEEETT--EEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCE
T ss_pred             hhhhhhhhccCCCC--eEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCce
Confidence            56777889999999  99998741          112222221  12244789999999999999999999987  4566


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+..
T Consensus       101 ~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  176 (327)
T 3lxl_A          101 LRLVMEYLPSGCLRDFLQR-HRARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKL  176 (327)
T ss_dssp             EEEEEECCTTCBHHHHHHH-HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEE
T ss_pred             EEEEEeecCCCCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEccccccee
Confidence            8999999999999999986 234699999999999999999999999   999999999999999999999999999975


Q ss_pred             cC--------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          168 LS--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       168 ~~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ..              +..|+|||.+....++.++||||||+++|+|++|..||......  ..................
T Consensus       177 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~  254 (327)
T 3lxl_A          177 LPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAE--FLRMMGCERDVPALSRLL  254 (327)
T ss_dssp             CCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH--HHHHCC----CCHHHHHH
T ss_pred             cccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccch--hhhhcccccccccHHHHH
Confidence            43              33499999998888999999999999999999999998643100  000000000000000011


Q ss_pred             hhhc---CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~---~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+.   ....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       255 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  298 (327)
T 3lxl_A          255 ELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQL  298 (327)
T ss_dssp             HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            1111   1134556778899999999999999999999998764

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=8.9e-41  Score=284.12  Aligned_cols=230  Identities=14%  Similarity=0.118  Sum_probs=188.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHH-----HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMA-----TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~-----~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|.....+|.|++  |.||++..      .++|     ........+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        13 ~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   90 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKF--GNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIY   90 (284)
T ss_dssp             GGGEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhceeeheecCCCC--eEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEE
Confidence            467888999999999  99999821      1111     1111223356789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +||||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+....
T Consensus        91 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~  165 (284)
T 2vgo_A           91 LMLEFAPRGELYKELQK--HGRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAP  165 (284)
T ss_dssp             EEECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECS
T ss_pred             EEEEeCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCc
Confidence            99999999999999986  34699999999999999999999999   99999999999999999999999999886432


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                               ++.|+|||.+....++.++|+||||+++|+|++|..||....   ... ..    ......       ...
T Consensus       166 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---~~~-~~----~~~~~~-------~~~  230 (284)
T 2vgo_A          166 SLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPS---HTE-TH----RRIVNV-------DLK  230 (284)
T ss_dssp             SSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS---HHH-HH----HHHHTT-------CCC
T ss_pred             ccccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCC---HhH-HH----HHHhcc-------ccC
Confidence                     567999999998889999999999999999999999996431   111 00    000000       112


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+...+..+.+++.+||+.||.+|||+.|+++
T Consensus       231 ~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          231 FPPFLSDGSKDLISKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence            44455678999999999999999999999986

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=6e-41  Score=286.01  Aligned_cols=231  Identities=18%  Similarity=0.170  Sum_probs=179.9

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEe----CCcc
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR----GSKP   88 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~   88 (274)
                      .|.....+|.|+|  |.||+|..      .+++...    .....+.+.+|+.++++++||||+++++++..    ....
T Consensus        27 ~~~~~~~lg~G~~--g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  104 (290)
T 1t4h_A           27 FLKFDIEIGRGSF--KTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCI  104 (290)
T ss_dssp             EEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEE
T ss_pred             eEEeeeeccCCCC--eEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceE
Confidence            3455668999999  99999821      1111111    11223457799999999999999999999865    4568


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--cccCCCCCCceEEc-CCCcEEEeccccc
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMD-EFWTAKISDFGLA  165 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~-~~~~~kl~d~g~~  165 (274)
                      ++||||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +  ++|+||||+||+++ .++.++|+|||++
T Consensus       105 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~  179 (290)
T 1t4h_A          105 VLVTELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLA  179 (290)
T ss_dssp             EEEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGG
T ss_pred             EEEEEecCCCCHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCc
Confidence            999999999999999986  35699999999999999999999998   8  99999999999997 7889999999998


Q ss_pred             eec---------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          166 KLL---------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       166 ~~~---------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      ...         +++.|+|||.+. +.++.++||||||+++|+|++|..||.......   ...    ....     ...
T Consensus       180 ~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~---~~~----~~~~-----~~~  246 (290)
T 1t4h_A          180 TLKRASFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAA---QIY----RRVT-----SGV  246 (290)
T ss_dssp             GGCCTTSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH---HHH----HHHT-----TTC
T ss_pred             ccccccccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHH---HHH----HHHh-----ccC
Confidence            543         367899999876 458999999999999999999999996431111   110    0011     111


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .+...+...++.+.+++.+||+.||++|||+.|+++.
T Consensus       247 ~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  283 (290)
T 1t4h_A          247 KPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             CCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence            1112333345679999999999999999999999863

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=3.6e-41  Score=297.74  Aligned_cols=227  Identities=18%  Similarity=0.148  Sum_probs=176.5

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHh-----cCCCCCCcHHHHHHH-HhcCCCCccceEeEEEEeCCc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATV-----NSPYSPSRPLTLTSI-VSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~-----~~~~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ..++|...+.||+|+|  |.||++..      .++|.+     ......+.+.+|..+ ++.++||||+++++++.+.+.
T Consensus        36 ~~~~y~~~~~lG~G~f--g~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~  113 (373)
T 2r5t_A           36 KPSDFHFLKVIGKGSF--GKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADK  113 (373)
T ss_dssp             CGGGEEEEEEEECCTT--CEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSE
T ss_pred             ChhheEEEEEEeeCCC--eEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCE
Confidence            4578898999999999  99998821      111211     112334556677776 567899999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++|+|.+++..  .+.+++...+.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++.
T Consensus       114 ~~lv~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~  188 (373)
T 2r5t_A          114 LYFVLDYINGGELFYHLQR--ERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKE  188 (373)
T ss_dssp             EEEEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGG
T ss_pred             EEEEEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCccccc
Confidence            9999999999999999986  45789999999999999999999999   999999999999999999999999999864


Q ss_pred             c-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          168 L-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       168 ~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      .           +++.|+|||++....++.++|+|||||++|||++|..||....   ... +.    ..+.+.      
T Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~---~~~-~~----~~i~~~------  254 (373)
T 2r5t_A          189 NIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN---TAE-MY----DNILNK------  254 (373)
T ss_dssp             GBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSB---HHH-HH----HHHHHS------
T ss_pred             cccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC---HHH-HH----HHHHhc------
Confidence            2           3678999999998899999999999999999999999996431   111 10    011111      


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMK  268 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~  268 (274)
                       +...+...+..+.+++.+||+.||.+||++.
T Consensus       255 -~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~  285 (373)
T 2r5t_A          255 -PLQLKPNITNSARHLLEGLLQKDRTKRLGAK  285 (373)
T ss_dssp             -CCCCCSSSCHHHHHHHHHHTCSSGGGSTTTT
T ss_pred             -ccCCCCCCCHHHHHHHHHHcccCHHhCCCCC
Confidence             1123445567899999999999999999985

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=1.2e-40  Score=304.08  Aligned_cols=234  Identities=20%  Similarity=0.186  Sum_probs=186.4

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH-------HHHH---HHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM-------RALM---ATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~---~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      ..++|...+.||.|+|  |.||++.       +++|   +........+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        20 ~~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~   97 (486)
T 3mwu_A           20 FAERYNIVCMLGKGSF--GEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY   97 (486)
T ss_dssp             HHHHEEEEEEEECCSS--SEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhcceEEeEEEeecCC--EEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEE
Confidence            3567888999999999  9999982       1111   11222234566789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc---CCCcEEEeccccce
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKISDFGLAK  166 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~---~~~~~kl~d~g~~~  166 (274)
                      +|||||.+|+|.+++..  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++   .++.+||+|||++.
T Consensus        98 lv~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~  172 (486)
T 3mwu_A           98 IVGELYTGGELFDEIIK--RKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLST  172 (486)
T ss_dssp             EEECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTT
T ss_pred             EEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCe
Confidence            99999999999999976  35799999999999999999999999   999999999999995   45679999999986


Q ss_pred             ec----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          167 LL----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       167 ~~----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      ..          +++.|+|||++.+ .++.++||||+||++|+|++|..||...   .....+     .....+.   ..
T Consensus       173 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~---~~~~~~-----~~i~~~~---~~  240 (486)
T 3mwu_A          173 CFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK---NEYDIL-----KRVETGK---YA  240 (486)
T ss_dssp             TBCCC----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCS---SHHHHH-----HHHHHTC---CC
T ss_pred             ECCCCCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCC---CHHHHH-----HHHHhCC---CC
Confidence            43          3678999999875 5899999999999999999999999643   111111     1111111   00


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+.+.....+..+.+++.+||+.||++|||+.|+++
T Consensus       241 ~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~  276 (486)
T 3mwu_A          241 FDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (486)
T ss_dssp             SCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            111122345678999999999999999999999986

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=4.1e-41  Score=291.37  Aligned_cols=235  Identities=17%  Similarity=0.139  Sum_probs=187.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCC--------CCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPY--------SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~--------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      .++|...+.+|.|+|  |.||++..      .++|......        ..+.+.+|+.++++++||||+++++++.+.+
T Consensus        11 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   88 (321)
T 2a2a_A           11 EDFYDIGEELGSGQF--AIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRT   88 (321)
T ss_dssp             HHHEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hccEEEeeEeeecCC--EEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence            567888899999999  99999821      1222222211        1234779999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC----cEEEecc
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW----TAKISDF  162 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~----~~kl~d~  162 (274)
                      ..++||||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++    .++|+||
T Consensus        89 ~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Df  163 (321)
T 2a2a_A           89 DVVLILELVSGGELFDFLAQ--KESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDF  163 (321)
T ss_dssp             EEEEEECCCCSCBHHHHHHT--CSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCC
T ss_pred             EEEEEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccC
Confidence            99999999999999999985  45799999999999999999999999   999999999999999887    7999999


Q ss_pred             ccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          163 GLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       163 g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      |++....          ++.|+|||.+....++.++|+||||+++|+|++|..||....   ....+..     ......
T Consensus       164 g~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---~~~~~~~-----i~~~~~  235 (321)
T 2a2a_A          164 GLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT---KQETLAN-----ITSVSY  235 (321)
T ss_dssp             TTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS---HHHHHHH-----HHTTCC
T ss_pred             ccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCC---HHHHHHH-----HHhccc
Confidence            9986532          567999999998889999999999999999999999996431   1111100     000000


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                         -.+.......+..+.+++.+||+.||++|||+.|+++.
T Consensus       236 ---~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h  273 (321)
T 2a2a_A          236 ---DFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (321)
T ss_dssp             ---CCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred             ---ccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence               00001112345678999999999999999999999863

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=1e-41  Score=294.81  Aligned_cols=242  Identities=18%  Similarity=0.192  Sum_probs=185.9

Q ss_pred             hccccccCCCCCCCCcchhHHH----------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeC--Cc
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM----------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG--SK   87 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~----------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~   87 (274)
                      .|...+.||.|+|  |.||++.          ..++|.....   ...+.+.+|+.++++++||||+++++++.+.  ..
T Consensus        32 ~~~~~~~lG~G~~--g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (318)
T 3lxp_A           32 YLKKIRDLGEGHF--GKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAAS  109 (318)
T ss_dssp             GEEEEEEEEECSS--EEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTE
T ss_pred             HHhhhheecCCCC--eEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCce
Confidence            3477889999999  9996541          1222222222   1134477999999999999999999999874  56


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++|+|.+++..   ..+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+..
T Consensus       110 ~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~  183 (318)
T 3lxp_A          110 LQLVMEYVPLGSLRDYLPR---HSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKA  183 (318)
T ss_dssp             EEEEECCCTTCBHHHHGGG---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred             EEEEEecccCCcHHHHHhh---CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCcccccc
Confidence            8999999999999999975   3599999999999999999999999   999999999999999999999999999875


Q ss_pred             cC--------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          168 LS--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       168 ~~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ..              +..|+|||.+....++.++||||||+++|+|++|..||.......  .....+...........
T Consensus       184 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~  261 (318)
T 3lxp_A          184 VPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKF--LELIGIAQGQMTVLRLT  261 (318)
T ss_dssp             CCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH--HHHHCSCCHHHHHHHHH
T ss_pred             ccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhh--hhhhcccccchhHHHHH
Confidence            43              334999999988889999999999999999999999996431100  00000000000001111


Q ss_pred             hhhc---CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~---~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+.   ....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       262 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  305 (318)
T 3lxp_A          262 ELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPIL  305 (318)
T ss_dssp             HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            1111   1134556678999999999999999999999998864

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=7.3e-41  Score=306.18  Aligned_cols=235  Identities=17%  Similarity=0.160  Sum_probs=182.5

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH------HHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      ...+.|.....||.|+|  |.||++..      .++|.+.    .....+.+.+|+.++++++||||+++++++.+.+..
T Consensus        34 ~~~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~  111 (494)
T 3lij_A           34 HLSEMYQRVKKLGSGAY--GEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNY  111 (494)
T ss_dssp             CHHHHEEEEEEEECC-----EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             chhcCeEEeeEEecCCC--EEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEE
Confidence            34567888999999999  99998821      1222222    123455678999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEeccccc
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGLA  165 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~d~g~~  165 (274)
                      ++|||||++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.   ++.+||+|||++
T Consensus       112 ~lv~e~~~~g~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a  186 (494)
T 3lij_A          112 YLVMECYKGGELFDEIIH--RMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLS  186 (494)
T ss_dssp             EEEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             EEEEecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCC
Confidence            999999999999999876  35699999999999999999999999   9999999999999975   455999999998


Q ss_pred             eec----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          166 KLL----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       166 ~~~----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      ...          +++.|+|||++. ..++.++||||+||++|+|++|..||...   .... +.    .....+..   
T Consensus       187 ~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~---~~~~-~~----~~i~~~~~---  254 (494)
T 3lij_A          187 AVFENQKKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQ---TDQE-IL----RKVEKGKY---  254 (494)
T ss_dssp             EECBTTBCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS---SHHH-HH----HHHHHTCC---
T ss_pred             eECCCCccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCC---CHHH-HH----HHHHhCCC---
Confidence            653          367899999876 46899999999999999999999999643   1111 11    11111110   


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+.+.....+..+.+++.+||+.||.+|||+.|+++
T Consensus       255 ~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~  291 (494)
T 3lij_A          255 TFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE  291 (494)
T ss_dssp             CCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence            0011112244678999999999999999999999986

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=1e-40  Score=286.49  Aligned_cols=234  Identities=16%  Similarity=0.195  Sum_probs=187.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .++|.....+|.|+|  |.||++..      .++|.....  ...+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus         8 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (304)
T 2jam_A            8 RKTFIFMEVLGSGAF--SEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVM   85 (304)
T ss_dssp             HHHEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccceeeeeccCCCC--ceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEE
Confidence            467888899999999  99998721      122222221  23455789999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEeccccceecC
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~d~g~~~~~~  169 (274)
                      ||+++++|.+++..  .+.+++..++.++.|++.||.|||+.   +++|+||||+||++   +.++.++|+|||.+....
T Consensus        86 e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~  160 (304)
T 2jam_A           86 QLVSGGELFDRILE--RGVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ  160 (304)
T ss_dssp             CCCCSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred             EcCCCccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence            99999999999975  35689999999999999999999999   99999999999999   778899999999986533


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                               ++.|+|||.+....++.++||||||+++|+|++|..||....   .. .+.    .....+..   ..+..
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---~~-~~~----~~i~~~~~---~~~~~  229 (304)
T 2jam_A          161 NGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEET---ES-KLF----EKIKEGYY---EFESP  229 (304)
T ss_dssp             CBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSC---HH-HHH----HHHHHCCC---CCCTT
T ss_pred             CCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC---HH-HHH----HHHHcCCC---CCCcc
Confidence                     678999999998889999999999999999999999996431   11 111    11111100   00112


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .....+..+.+++.+||+.||++|||+.|+++
T Consensus       230 ~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          230 FWDDISESAKDFICHLLEKDPNERYTCEKALS  261 (304)
T ss_dssp             TTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             ccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            33445678999999999999999999999986

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=5.8e-41  Score=291.53  Aligned_cols=245  Identities=17%  Similarity=0.154  Sum_probs=181.7

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      -....++|...+.+|.|+|  |.||++.      ..++|.+...    ...+.+.+|+.++++++||||+++++++.+.+
T Consensus        29 ~~~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  106 (329)
T 3gbz_A           29 SATSIDRYRRITKLGEGTY--GEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNH  106 (329)
T ss_dssp             ---CGGGEEEEEEEEECSS--SEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETT
T ss_pred             cccchhhEEEEEEEEecCC--eEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCC
Confidence            3455678999999999999  9999982      1122222211    22456779999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE-----cCCCcEEEec
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM-----DEFWTAKISD  161 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~-----~~~~~~kl~d  161 (274)
                      ..++||||+. |+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||++     +.++.+||+|
T Consensus       107 ~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~D  180 (329)
T 3gbz_A          107 RLHLIFEYAE-NDLKKYMDK--NPDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGD  180 (329)
T ss_dssp             EEEEEEECCS-EEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECC
T ss_pred             EEEEEEecCC-CCHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECc
Confidence            9999999998 599999986  45699999999999999999999999   99999999999999     4555699999


Q ss_pred             cccceecC-----------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh-
Q 048314          162 FGLAKLLS-----------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI-  228 (274)
Q Consensus       162 ~g~~~~~~-----------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~-  228 (274)
                      ||++....           +..|+|||.+... .++.++|||||||++|+|++|..||...   .....+......... 
T Consensus       181 fg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~---~~~~~~~~~~~~~~~~  257 (329)
T 3gbz_A          181 FGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGD---SEIDQLFKIFEVLGLP  257 (329)
T ss_dssp             TTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCS---SHHHHHHHHHHHHCCC
T ss_pred             CCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCC---CHHHHHHHHHHHhCCC
Confidence            99986432           6779999998774 4899999999999999999999999643   111111111110000 


Q ss_pred             -hhhhh------hhhc------CC----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          229 -NRELN------KLVR------GT----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       229 -~~~~~------~~~~------~~----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       .....      ....      ..    ..+...+.++.+++.+||+.||++|||+.|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          258 DDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             CTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             chhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence             00000      0000      00    011124578899999999999999999999986

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=5.5e-41  Score=286.80  Aligned_cols=230  Identities=16%  Similarity=0.156  Sum_probs=187.5

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.+|+|+|  |.||++..      .++|.....     ...+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        14 ~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (294)
T 2rku_A           14 RRRYVRGRFLGKGGF--AKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVF   91 (294)
T ss_dssp             TEEEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             ccceEEEEEEeecCC--EEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEE
Confidence            467888999999999  99999821      112211111     12345678999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +||||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+....
T Consensus        92 lv~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~  166 (294)
T 2rku_A           92 VVLELCRRRSLLELHKR--RKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE  166 (294)
T ss_dssp             EEEECCTTCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecc
Confidence            99999999999999875  35799999999999999999999999   99999999999999999999999999987542


Q ss_pred             -----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          170 -----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       170 -----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                 ++.|+|||.+....++.++|+||||+++|+|++|..||....   ......    . ...       ..
T Consensus       167 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~---~~~~~~----~-~~~-------~~  231 (294)
T 2rku_A          167 YDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC---LKETYL----R-IKK-------NE  231 (294)
T ss_dssp             STTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS---HHHHHH----H-HHT-------TC
T ss_pred             cCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC---HHHHHH----H-Hhh-------cc
Confidence                       567999999988889999999999999999999999996431   110000    0 000       01


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+...+..+.+++.+||+.||++|||+.|+++
T Consensus       232 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~  265 (294)
T 2rku_A          232 YSIPKHINPVAASLIQKMLQTDPTARPTINELLN  265 (294)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             CCCccccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence            1234455678999999999999999999999986

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=291.74  Aligned_cols=239  Identities=18%  Similarity=0.171  Sum_probs=186.0

Q ss_pred             hHHHHhhhccccccCCCCCCCCcchhHHHH---HHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           16 SLCTKLRNFCRSSLNDRNSPRSKSVWSCMR---ALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        16 ~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~---~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      +.....++|.....+|.|+|  |.||+|..   .++|...    .....+.+.+|+.++++++||||+++++++.+.+..
T Consensus        27 ~~~i~~~~~~~~~~lg~G~~--g~V~~~~~~~~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  104 (319)
T 2y4i_B           27 EWDIPFEQLEIGELIGKGRF--GQVYHGRWHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHL  104 (319)
T ss_dssp             GSSSCCSCEECCCBCCCSSS--SEEEEEEESSSEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCE
T ss_pred             cccCCHHHeEEeeEeccCCc--eEEEEEEEcCeEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCce
Confidence            33344577888999999999  99999821   1111111    223456788999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||||+++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++ ++.++|+|||++...
T Consensus       105 ~iv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~  179 (319)
T 2y4i_B          105 AIITSLCKGRTLYSVVRD-AKIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSIS  179 (319)
T ss_dssp             EEECBCCCSEEHHHHTTS-SCCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC--
T ss_pred             EEEeecccCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcccc
Confidence            999999999999999976 345699999999999999999999999   999999999999998 679999999986543


Q ss_pred             ----------------CCCCcCCCccccc---------CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH
Q 048314          169 ----------------SDKGCMAPECYKR---------TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV  223 (274)
Q Consensus       169 ----------------~~~~~~ape~~~~---------~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~  223 (274)
                                      ++..|+|||.+..         ..++.++||||||+++|+|++|..||....   .....    
T Consensus       180 ~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~---~~~~~----  252 (319)
T 2y4i_B          180 GVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP---AEAII----  252 (319)
T ss_dssp             --------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC---HHHHH----
T ss_pred             ccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC---HHHHH----
Confidence                            2456999998864         347889999999999999999999996431   11100    


Q ss_pred             HHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          224 YKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       .....     ...+...+...+..+.+++.+||+.||++|||+.+++++|
T Consensus       253 -~~~~~-----~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l  297 (319)
T 2y4i_B          253 -WQMGT-----GMKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDML  297 (319)
T ss_dssp             -HHHHT-----TCCCCCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHH
T ss_pred             -HHhcc-----CCCCCCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence             00011     1111112223456789999999999999999999999864

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=293.17  Aligned_cols=240  Identities=15%  Similarity=0.145  Sum_probs=183.7

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ++|...+.+|.|+|  |.||++..      .++|.+..   ......+.+|+.++++++||||+++++++.+.+..++||
T Consensus         2 ~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (324)
T 3mtl_A            2 ETYIKLDKLGEGTY--ATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVF   79 (324)
T ss_dssp             CSEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             CceEEEEEEcCCCC--EEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEe
Confidence            46777889999999  99999821      12222221   123345678999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+. |+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++....   
T Consensus        80 e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~  154 (324)
T 3mtl_A           80 EYLD-KDLKQYLDD-CGNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPT  154 (324)
T ss_dssp             ECCS-EEHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC----
T ss_pred             cccc-cCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCCc
Confidence            9997 599999987 445699999999999999999999999   99999999999999999999999999986433   


Q ss_pred             --------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh---hhhh----
Q 048314          170 --------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN---RELN----  233 (274)
Q Consensus       170 --------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~----  233 (274)
                              ++.|+|||.+.+ ..++.++||||||+++|+|++|..||....   .. .....+......   ....    
T Consensus       155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~---~~-~~~~~i~~~~~~~~~~~~~~~~~  230 (324)
T 3mtl_A          155 KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGST---VE-EQLHFIFRILGTPTEETWPGILS  230 (324)
T ss_dssp             --------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS---HH-HHHHHHHHHHCCCCTTTSTTGGG
T ss_pred             cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC---HH-HHHHHHHHHhCCCChHhchhhhc
Confidence                    667999999876 568999999999999999999999996431   11 111111111100   0000    


Q ss_pred             -----hhhcCC-------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 -----KLVRGT-------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 -----~~~~~~-------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                           ....+.       ......+..+.+++.+||+.||++|||++|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  281 (324)
T 3mtl_A          231 NEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK  281 (324)
T ss_dssp             CHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             chhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence                 000000       112234567899999999999999999999986

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=2.4e-41  Score=287.13  Aligned_cols=232  Identities=17%  Similarity=0.169  Sum_probs=184.8

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~   88 (274)
                      ..++|...+.+|.|+|  |.||++..      .++|.....    .....+.+|+..+.++ +||||+++++++.+.+..
T Consensus         9 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~   86 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEF--GSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHM   86 (289)
T ss_dssp             HHHHEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEE
T ss_pred             ccchhhhhhhhcCCCc--eEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeE
Confidence            3578888999999999  99999822      122222221    1234467899999999 899999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc--------------
Q 048314           89 STEAALDLPWDLAYIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD--------------  152 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~--------------  152 (274)
                      ++||||+++++|.+++....  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++              
T Consensus        87 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~  163 (289)
T 1x8b_A           87 LIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDE  163 (289)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC--------------
T ss_pred             EEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCccccccccc
Confidence            99999999999999998632  25699999999999999999999999   999999999999998              


Q ss_pred             -----CCCcEEEeccccceecC-------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHH
Q 048314          153 -----EFWTAKISDFGLAKLLS-------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL  219 (274)
Q Consensus       153 -----~~~~~kl~d~g~~~~~~-------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~  219 (274)
                           ....++|+|||.+....       ++.|+|||.+... .++.++||||||+++++|++|.+|+...   ..   .
T Consensus       164 ~~~~~~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~---~~---~  237 (289)
T 1x8b_A          164 DDWASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG---DQ---W  237 (289)
T ss_dssp             ------CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS---HH---H
T ss_pred             ccccCCceEEEEcccccccccCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch---hH---H
Confidence                 44478999999987654       5679999998765 5678999999999999999998876432   10   0


Q ss_pred             HHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                           ........      ...+...+..+.+++.+||+.||++|||+.|+++.
T Consensus       238 -----~~~~~~~~------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  280 (289)
T 1x8b_A          238 -----HEIRQGRL------PRIPQVLSQEFTELLKVMIHPDPERRPSAMALVKH  280 (289)
T ss_dssp             -----HHHHTTCC------CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             -----HHHHcCCC------CCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence                 00111111      12344556789999999999999999999999863

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=7.3e-41  Score=288.09  Aligned_cols=244  Identities=15%  Similarity=0.150  Sum_probs=184.6

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCC----CCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYS----PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ++|...+.+|.|+|  |.||++..      .++|.......    .+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus         3 ~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (311)
T 4agu_A            3 EKYEKIGKIGEGSY--GVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLV   80 (311)
T ss_dssp             CCEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEeeEEeecCC--eEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEE
Confidence            56778899999999  99999822      12222222211    23456899999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |||+++++|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+....  
T Consensus        81 ~e~~~~~~l~~~~~~--~~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  155 (311)
T 4agu_A           81 FEYCDHTVLHELDRY--QRGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGP  155 (311)
T ss_dssp             EECCSEEHHHHHHHT--SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred             EEeCCCchHHHHHhh--hcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc
Confidence            999999999998875  45699999999999999999999999   99999999999999999999999999987543  


Q ss_pred             ---------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH-------HHHhhhhh
Q 048314          170 ---------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY-------KCFINREL  232 (274)
Q Consensus       170 ---------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~-------~~~~~~~~  232 (274)
                               +..|+|||.+.+ ..++.++||||||+++|+|++|..||.................       ........
T Consensus       156 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (311)
T 4agu_A          156 SDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQY  235 (311)
T ss_dssp             ----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGG
T ss_pred             ccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccc
Confidence                     556999999876 5689999999999999999999999964421111110100000       00000000


Q ss_pred             -hh--hhcCCc------cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 -NK--LVRGTE------VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 -~~--~~~~~~------~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       ..  .-++..      .....+..+.+++.+||+.||++|||++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          236 FSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             GTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             cccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence             00  000000      01234567899999999999999999999986

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.4e-41  Score=301.26  Aligned_cols=245  Identities=12%  Similarity=0.109  Sum_probs=189.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC--cce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS--KPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~   89 (274)
                      .++|.....+|.|+|  |.||+|..      .++|.+..   ....+.+.+|++++++++||||+++++++.+.+  ..+
T Consensus         8 ~~~y~i~~~LG~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~   85 (396)
T 4eut_A            8 NHLWLLSDILGQGAT--ANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV   85 (396)
T ss_dssp             SEEEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred             CCceEEEEEEEcCCC--eEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeE
Confidence            356788899999999  99999821      12222221   123455679999999999999999999998755  679


Q ss_pred             EEEEeCCCCCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE----cCCCcEEEecccc
Q 048314           90 TEAALDLPWDLAYIIFCSAE-RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKISDFGL  164 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~----~~~~~~kl~d~g~  164 (274)
                      +||||+++|+|.+++..... ..+++..++.++.|++.||.|||+.   +++||||||+||++    +.++.+||+|||+
T Consensus        86 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~  162 (396)
T 4eut_A           86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA  162 (396)
T ss_dssp             EEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGG
T ss_pred             EEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCC
Confidence            99999999999999986422 2399999999999999999999999   99999999999998    7778899999999


Q ss_pred             ceec----------CCCCcCCCccccc--------CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH
Q 048314          165 AKLL----------SDKGCMAPECYKR--------TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC  226 (274)
Q Consensus       165 ~~~~----------~~~~~~ape~~~~--------~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~  226 (274)
                      ++..          ++..|+|||++..        ..++.++||||||+++|||++|+.||.....+........   ..
T Consensus       163 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~---~~  239 (396)
T 4eut_A          163 ARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMY---KI  239 (396)
T ss_dssp             CEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHH---HH
T ss_pred             ceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHH---HH
Confidence            9753          3678999998864        4577899999999999999999999975433322221111   11


Q ss_pred             Hhhhhhh-----------------hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          227 FINRELN-----------------KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       227 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .......                 ..-.....+......+.+++.+||+.||++|||+.|+++.
T Consensus       240 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~  303 (396)
T 4eut_A          240 ITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAE  303 (396)
T ss_dssp             HHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHH
T ss_pred             hcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHH
Confidence            1110000                 0000113457788899999999999999999999999875

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-41  Score=295.00  Aligned_cols=244  Identities=12%  Similarity=0.082  Sum_probs=188.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHHH---------HHHHhc--CCCCCCcHHHHHHHHhcCCCCccce------------
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMRA---------LMATVN--SPYSPSRPLTLTSIVSRVSWTTDIE------------   77 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~~---------~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~------------   77 (274)
                      .++|...+.+|.|+|  |.||++...         ..+.+.  .....+.+.+|+.++++++||||++            
T Consensus        41 ~~~y~~~~~lg~G~~--g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  118 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQ--GILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLA  118 (352)
T ss_dssp             SCEEEEEEEEEEETT--EEEEEEEECC-----------CEEEEEEETTSTHHHHHHHHHHHCCHHHHHHHHHHTTCTTCS
T ss_pred             CCeEEEEEEecCCCC--eEEEEEeecCCccccccccCceEEEEEecccchHHHHHHHHHHhcccchhhhhhhhccCCccC
Confidence            367888899999999  999999321         011111  1123367899999999999999988            


Q ss_pred             ---EeEEEEe-CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC
Q 048314           78 ---VSSVAMR-GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE  153 (274)
Q Consensus        78 ---l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~  153 (274)
                         +++++.. .+..++||||+ +++|.+++.......+++..++.++.|++.||.|||+.   +++||||||+||+++.
T Consensus       119 i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIl~~~  194 (352)
T 2jii_A          119 IPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENIFVDP  194 (352)
T ss_dssp             CCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGEEEET
T ss_pred             ccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEEcC
Confidence               6778776 77889999999 99999999875456799999999999999999999999   9999999999999999


Q ss_pred             CC--cEEEeccccceec------------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCC
Q 048314          154 FW--TAKISDFGLAKLL------------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASK  213 (274)
Q Consensus       154 ~~--~~kl~d~g~~~~~------------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~  213 (274)
                      ++  .++|+|||++...                  +++.|+|||.+....++.++||||||+++|+|++|..||......
T Consensus       195 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~  274 (352)
T 2jii_A          195 EDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPN  274 (352)
T ss_dssp             TEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred             CCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcC
Confidence            88  8999999998542                  356899999999888999999999999999999999999754222


Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          214 PEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...  +.......  .................+..+.+++.+||+.||++|||+.+|++.|
T Consensus       275 ~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L  331 (352)
T 2jii_A          275 TED--IMKQKQKF--VDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNL  331 (352)
T ss_dssp             HHH--HHHHHHHH--HHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred             HHH--HHHHHHhc--cCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHH
Confidence            211  11111110  1111111111111123357899999999999999999999998864

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=1.6e-41  Score=287.76  Aligned_cols=235  Identities=15%  Similarity=0.153  Sum_probs=186.5

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEe--CCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--GSKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~   88 (274)
                      .++|.....+|.|+|  |.||++..      .++|.....    ...+.+.+|+.++++++||||+++++++.+  .+..
T Consensus         5 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   82 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSY--GRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTL   82 (279)
T ss_dssp             GGGEEEEEEEEECSS--SEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEE
T ss_pred             hhheeeehhccCCCC--cEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceE
Confidence            567888999999999  99999822      122222211    122446799999999999999999998854  5678


Q ss_pred             eEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC-----cccCCCCCCceEEcCCCcEEEec
Q 048314           89 STEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPP-----ILHCDIKPQNILMDEFWTAKISD  161 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~-----i~h~dl~~~nil~~~~~~~kl~d  161 (274)
                      ++||||+++++|.+++...  ....+++..++.++.|++.||.|||+.   +     ++|+||||+||+++.++.++|+|
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~d  159 (279)
T 2w5a_A           83 YIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGD  159 (279)
T ss_dssp             EEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECC
T ss_pred             EEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEec
Confidence            9999999999999999853  234599999999999999999999998   7     99999999999999999999999


Q ss_pred             cccceec-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh
Q 048314          162 FGLAKLL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR  230 (274)
Q Consensus       162 ~g~~~~~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      ||.+...           ++..|+|||.+....++.++||||||+++|+|++|..||....    ...+.    .....+
T Consensus       160 fg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~~----~~i~~~  231 (279)
T 2w5a_A          160 FGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS----QKELA----GKIREG  231 (279)
T ss_dssp             CCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHH----HHHHHT
T ss_pred             CchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccC----HHHHH----HHHhhc
Confidence            9998643           3667999999988889999999999999999999999996431    11111    111111


Q ss_pred             hhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          231 ELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..      ...+...+..+.+++.+||+.||++|||+.||++.+
T Consensus       232 ~~------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~  269 (279)
T 2w5a_A          232 KF------RRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENP  269 (279)
T ss_dssp             CC------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred             cc------ccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence            11      124445668899999999999999999999999753

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=291.33  Aligned_cols=230  Identities=18%  Similarity=0.185  Sum_probs=182.2

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH-----HHHHHhcCCC----CCCcHHHHHHHHhcCCC--CccceEeEEEEeCCcc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSPY----SPSRPLTLTSIVSRVSW--TTDIEVSSVAMRGSKP   88 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~~----~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~   88 (274)
                      ..+.|...+.||.|+|  |.||++..     .++|.+....    ..+.+.+|+.+|.+++|  |||+++++++.+.+..
T Consensus         7 ~~~~y~i~~~lG~G~~--g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~   84 (343)
T 3dbq_A            7 KGRIYSILKQIGSGGS--SKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYI   84 (343)
T ss_dssp             SSCEEEEEEEESCCSS--EEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             ecCEEEEEEEEecCCC--eEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEE
Confidence            4567888999999999  99998822     1222222211    12456789999999986  9999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++||| +.+|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++ ++.+||+|||++...
T Consensus        85 ~lv~e-~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~  157 (343)
T 3dbq_A           85 YMVME-CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQM  157 (343)
T ss_dssp             EEEEC-CCSEEHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC
T ss_pred             EEEEe-CCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeeccccccc
Confidence            99999 568899999986  45799999999999999999999999   999999999999997 578999999998643


Q ss_pred             -------------CCCCcCCCccccc-----------CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH
Q 048314          169 -------------SDKGCMAPECYKR-----------TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY  224 (274)
Q Consensus       169 -------------~~~~~~ape~~~~-----------~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~  224 (274)
                                   +++.|+|||.+..           ..++.++||||||+++|+|++|..||.....   ...      
T Consensus       158 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~~~------  228 (343)
T 3dbq_A          158 QPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN---QIS------  228 (343)
T ss_dssp             ------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCS---HHH------
T ss_pred             CcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhh---HHH------
Confidence                         3778999999864           5688999999999999999999999964311   100      


Q ss_pred             HHHhhhhhhhhhcC---CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          225 KCFINRELNKLVRG---TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       225 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                            .....+++   ...+...+..+.+++.+||+.||.+|||+.|+++.
T Consensus       229 ------~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          229 ------KLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             ------HHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ------HHHHHhcCCcccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence                  01111111   12344445788999999999999999999999863

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1e-40  Score=287.53  Aligned_cols=237  Identities=17%  Similarity=0.140  Sum_probs=182.4

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ...++|...+.+|.|+|  |.||++..      .++|.....     ...+.+.+|+.++++++||||+++++++.+.+.
T Consensus        31 ~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~  108 (309)
T 2h34_A           31 TQFGPYRLRRLVGRGGM--GDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQ  108 (309)
T ss_dssp             ---CCEEEEEEEEECSS--SEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTE
T ss_pred             cEeccEEEEEEEcCCCC--eeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCe
Confidence            34577888999999999  99999821      112221111     112457799999999999999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++..
T Consensus       109 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~  183 (309)
T 2h34_A          109 LYVDMRLINGVDLAAMLRR--QGPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASA  183 (309)
T ss_dssp             EEEEEECCCCEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC---
T ss_pred             EEEEEEecCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCcc
Confidence            9999999999999999986  35699999999999999999999999   999999999999999999999999998754


Q ss_pred             c------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          168 L------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       168 ~------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      .            ++..|+|||.+....++.++||||||+++|+|++|..||...   ... .+.    .... .   ..
T Consensus       184 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~---~~~-~~~----~~~~-~---~~  251 (309)
T 2h34_A          184 TTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGD---QLS-VMG----AHIN-Q---AI  251 (309)
T ss_dssp             -------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSC---HHH-HHH----HHHH-S---CC
T ss_pred             ccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCc---hHH-HHH----HHhc-c---CC
Confidence            3            256799999999888999999999999999999999999643   111 110    1000 0   00


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCC-ChhhHHhhC
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRP-SMKCVVMML  274 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-s~~evl~~L  274 (274)
                      ..+...+...+..+.+++.+||+.||++|| |++++++.|
T Consensus       252 ~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l  291 (309)
T 2h34_A          252 PRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAA  291 (309)
T ss_dssp             CCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHH
T ss_pred             CCccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHH
Confidence            011123345567899999999999999999 899988754

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=5.9e-41  Score=292.19  Aligned_cols=230  Identities=16%  Similarity=0.147  Sum_probs=187.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.||+|+|  |.||++..      .++|.....     ...+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        40 ~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  117 (335)
T 2owb_A           40 RRRYVRGRFLGKGGF--AKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVF  117 (335)
T ss_dssp             TEEEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             CCceEEEEEEeeCCC--eEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEE
Confidence            467888999999999  99999821      112211111     12345678999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +||||+.+++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++....
T Consensus       118 lv~e~~~~~~L~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  192 (335)
T 2owb_A          118 VVLELCRRRSLLELHKR--RKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE  192 (335)
T ss_dssp             EEECCCTTCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEecCCCCCHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecc
Confidence            99999999999999876  35799999999999999999999999   99999999999999999999999999987542


Q ss_pred             -----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          170 -----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       170 -----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                 +..|+|||.+....++.++||||||+++|+|++|..||....   .....     ......       .
T Consensus       193 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---~~~~~-----~~~~~~-------~  257 (335)
T 2owb_A          193 YDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC---LKETY-----LRIKKN-------E  257 (335)
T ss_dssp             STTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS---HHHHH-----HHHHHT-------C
T ss_pred             cCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCC---HHHHH-----HHHhcC-------C
Confidence                       567999999988889999999999999999999999996431   11100     000110       1


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+...+..+.+++.+||+.||++|||+.|+++
T Consensus       258 ~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  291 (335)
T 2owb_A          258 YSIPKHINPVAASLIQKMLQTDPTARPTINELLN  291 (335)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             CCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1234455678899999999999999999999986

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=2.7e-40  Score=282.21  Aligned_cols=233  Identities=16%  Similarity=0.138  Sum_probs=183.5

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      .|....++|.|+|  |.||+|..      .++|.....  ...+.+.+|+.++++++||||+++++++.+.+..++||||
T Consensus        23 ~~~~~~~lg~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  100 (295)
T 2clq_A           23 ENGDRVVLGKGTY--GIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQ  100 (295)
T ss_dssp             TTSSBCEEEECSS--SEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             CCCCcEEEeecCc--EEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEe
Confidence            3444568999999  99999831      122222222  2345678999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEeccccceecC---
Q 048314           95 DLPWDLAYIIFCSA-ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKISDFGLAKLLS---  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~d~g~~~~~~---  169 (274)
                      +++++|.+++.... ...+++..++.++.|++.||.|||+.   +++|+||||+||+++. ++.++|+|||.+....   
T Consensus       101 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~  177 (295)
T 2clq_A          101 VPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN  177 (295)
T ss_dssp             CSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC--
T ss_pred             CCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCCCC
Confidence            99999999998742 23577999999999999999999999   9999999999999987 8999999999986532   


Q ss_pred             --------CCCcCCCcccccCC--CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          170 --------DKGCMAPECYKRTP--ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       170 --------~~~~~ape~~~~~~--~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                              +..|+|||.+....  ++.++||||||+++|+|++|..||.........  ..    .   ..   ......
T Consensus       178 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~----~---~~---~~~~~~  245 (295)
T 2clq_A          178 PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAA--MF----K---VG---MFKVHP  245 (295)
T ss_dssp             ---CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHH--HH----H---HH---HHCCCC
T ss_pred             CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHH--HH----h---hc---cccccc
Confidence                    56799999987653  788999999999999999999999643211110  00    0   00   000111


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+...+..+.+++.+||+.||++|||+.|+++
T Consensus       246 ~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          246 EIPESMSAEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             CCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             cccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            345566788999999999999999999999986

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=4e-40  Score=283.48  Aligned_cols=239  Identities=17%  Similarity=0.201  Sum_probs=182.9

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      ..++|...+.+|.|+|  |.||++..      .++|.....     ...+.+.+|+.++++++||||+++++++.+.+..
T Consensus        30 ~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~  107 (310)
T 2wqm_A           30 TLANFRIEKKIGRGQF--SEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNEL  107 (310)
T ss_dssp             SGGGEEEEEEEECC----CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEE
T ss_pred             cccceEEEEeecCCCC--ceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcE
Confidence            3467888999999999  99998821      122222211     1234567999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           89 STEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ++||||+.+++|.+++...  ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++.
T Consensus       108 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~  184 (310)
T 2wqm_A          108 NIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGR  184 (310)
T ss_dssp             EEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC----
T ss_pred             EEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEecccee
Confidence            9999999999999999753  345699999999999999999999999   99999999999999999999999999976


Q ss_pred             ec-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          167 LL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       167 ~~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      ..           ++..|+|||.+....++.++||||||+++|+|++|..||.........  +.    .......    
T Consensus       185 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~--~~----~~~~~~~----  254 (310)
T 2wqm_A          185 FFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYS--LC----KKIEQCD----  254 (310)
T ss_dssp             --------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHH--HH----HHHHTTC----
T ss_pred             eecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHH--HH----HHhhccc----
Confidence            43           256799999999888999999999999999999999999643221110  10    0011110    


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       .+...+...+..+.+++.+||+.||++|||+.+|++.|
T Consensus       255 -~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l  292 (310)
T 2wqm_A          255 -YPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVA  292 (310)
T ss_dssp             -SCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -CCCCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence             11112234567899999999999999999999998764

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=1.6e-40  Score=295.43  Aligned_cols=228  Identities=18%  Similarity=0.184  Sum_probs=180.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----HHHHHhcCCC----CCCcHHHHHHHHhcCC--CCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSPY----SPSRPLTLTSIVSRVS--WTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~~----~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.||.|+|  |.||++..     .++|.+....    ..+.+.+|+.+|++++  ||||+++++++...+..+
T Consensus        55 ~~~y~~~~~LG~G~f--g~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~  132 (390)
T 2zmd_A           55 GRIYSILKQIGSGGS--SKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY  132 (390)
T ss_dssp             TEEEEEEEEEECCSS--EEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             CCceEEEEEEccCCC--eEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEE
Confidence            345888899999999  99999822     1222222211    1245779999999997  599999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      +||| +.+++|.+++..  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++ ++.+||+|||++... 
T Consensus       133 lv~E-~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~  205 (390)
T 2zmd_A          133 MVME-CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ  205 (390)
T ss_dssp             EEEE-CCSEEHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC-
T ss_pred             EEEe-cCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCcccccc
Confidence            9999 678899999986  34789999999999999999999999   999999999999995 578999999998643 


Q ss_pred             ------------CCCCcCCCccccc-----------CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH
Q 048314          169 ------------SDKGCMAPECYKR-----------TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK  225 (274)
Q Consensus       169 ------------~~~~~~ape~~~~-----------~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~  225 (274)
                                  +++.|+|||++..           ..++.++|||||||++|+|++|..||.....   ...       
T Consensus       206 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~---~~~-------  275 (390)
T 2zmd_A          206 PDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN---QIS-------  275 (390)
T ss_dssp             --------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCC---HHH-------
T ss_pred             CCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhH---HHH-------
Confidence                        3677999999864           3688999999999999999999999964311   100       


Q ss_pred             HHhhhhhhhhhcCC---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          226 CFINRELNKLVRGT---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       226 ~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                           ....++++.   ..+...+..+.+++.+||+.||++|||+.|+++
T Consensus       276 -----~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~  320 (390)
T 2zmd_A          276 -----KLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  320 (390)
T ss_dssp             -----HHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -----HHHHHhCccccCCCCccchHHHHHHHHHHcccChhhCCCHHHHhh
Confidence                 011111111   233334578899999999999999999999986

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=3.9e-41  Score=295.80  Aligned_cols=245  Identities=18%  Similarity=0.178  Sum_probs=187.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|...+.+|.|+|  |.||++..      .++|.....   ...+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus        32 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  109 (360)
T 3eqc_A           32 DDDFEKISELGAGNG--GVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC  109 (360)
T ss_dssp             GGGEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cccceeeeeecCCCC--eEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEE
Confidence            357888999999999  99999821      222222221   1124577999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEecccccee---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL---  167 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~---  167 (274)
                      |||+++++|.+++..  ...+++..+..++.|++.||.|||+ .   +++|+||||+||+++.++.++|+|||++..   
T Consensus       110 ~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~~i~~~l~~lh~~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  184 (360)
T 3eqc_A          110 MEHMDGGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  184 (360)
T ss_dssp             ECCCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH
T ss_pred             EECCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHhC---CEEcCCccHHHEEECCCCCEEEEECCCCccccc
Confidence            999999999999986  3469999999999999999999998 5   899999999999999999999999998853   


Q ss_pred             ------cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHH------------------
Q 048314          168 ------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV------------------  223 (274)
Q Consensus       168 ------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~------------------  223 (274)
                            .+++.|+|||.+....++.++||||||+++|+|++|..||................                  
T Consensus       185 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (360)
T 3eqc_A          185 SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPL  264 (360)
T ss_dssp             HC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC---------------------
T ss_pred             ccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcc
Confidence                  34788999999998889999999999999999999999997432111000000000                  


Q ss_pred             ----HHHH----hhhhhhhhhc---CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          224 ----YKCF----INRELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       224 ----~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                          ....    ..........   +...+...+..+.+++.+||+.||++|||++|+++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  324 (360)
T 3eqc_A          265 NKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV  324 (360)
T ss_dssp             ---------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             cccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence                0000    0000000111   11122234678999999999999999999999986

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.6e-41  Score=292.30  Aligned_cols=243  Identities=19%  Similarity=0.202  Sum_probs=186.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHH----------HHHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC--
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM----------RALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS--   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~----------~~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--   86 (274)
                      .++|...+.+|.|+|  |.||++.          ..++|.....  ...+.+.+|+.++++++||||+++++++...+  
T Consensus        40 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  117 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNF--GSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR  117 (326)
T ss_dssp             GGGEEEEEEEECCSS--EEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----
T ss_pred             HHHceeeeeeccCCC--eEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCC
Confidence            456777889999999  9999873          1122222221  12245779999999999999999999987644  


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++||||+++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++.
T Consensus       118 ~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~  193 (326)
T 2w1i_A          118 NLKLIMEYLPYGSLRDYLQK-HKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTK  193 (326)
T ss_dssp             CCEEEECCCTTCBHHHHHHH-STTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred             ceEEEEECCCCCCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchh
Confidence            78999999999999999987 345699999999999999999999999   99999999999999999999999999987


Q ss_pred             ecC--------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH----HHh
Q 048314          167 LLS--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK----CFI  228 (274)
Q Consensus       167 ~~~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~----~~~  228 (274)
                      ...              +..|+|||.+....++.++||||||+++|+|++|..|+...   ...  .......    ...
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~---~~~--~~~~~~~~~~~~~~  268 (326)
T 2w1i_A          194 VLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSP---PAE--FMRMIGNDKQGQMI  268 (326)
T ss_dssp             ECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSH---HHH--HHHHHCTTCCTHHH
T ss_pred             hccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCC---HHH--HHHhhccccchhhh
Confidence            543              23499999998888899999999999999999999998632   000  0000000    000


Q ss_pred             hhhhhhhhc---CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          229 NRELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       229 ~~~~~~~~~---~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...+...+.   ..+.+...+..+.+++.+||+.||++|||+.||++.|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L  317 (326)
T 2w1i_A          269 VFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRV  317 (326)
T ss_dssp             HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            000111111   1124556678899999999999999999999998864

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.4e-40  Score=286.87  Aligned_cols=246  Identities=20%  Similarity=0.147  Sum_probs=181.9

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcC-------CCCCCcHHHHHHHHhcCCCCccceEeEEEEe
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS-------PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR   84 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~-------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~   84 (274)
                      ....++|...+.+|.|+|  |.||++..      .++|....       ....+.+.+|+.++++++||||+++++++.+
T Consensus         6 ~~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   83 (346)
T 1ua2_A            6 KSRAKRYEKLDFLGEGQF--ATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH   83 (346)
T ss_dssp             -------CEEEEEEEETT--EEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC
T ss_pred             HHHhcccEEEeEEeecCC--EEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEee
Confidence            345678888999999999  99999811      11221111       1123567899999999999999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      .+..++||||+.+ +|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+
T Consensus        84 ~~~~~lv~e~~~~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~  158 (346)
T 1ua2_A           84 KSNISLVFDFMET-DLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGL  158 (346)
T ss_dssp             TTCCEEEEECCSE-EHHHHHTT-CCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGG
T ss_pred             CCceEEEEEcCCC-CHHHHHHh-cCcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEeccc
Confidence            9999999999985 89999876 445689999999999999999999999   999999999999999999999999999


Q ss_pred             ceecC-----------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh--h
Q 048314          165 AKLLS-----------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN--R  230 (274)
Q Consensus       165 ~~~~~-----------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~--~  230 (274)
                      +....           ++.|+|||.+... .++.++||||||+++|+|++|.+||...   .....+..........  .
T Consensus       159 a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~---~~~~~~~~i~~~~~~~~~~  235 (346)
T 1ua2_A          159 AKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD---SDLDQLTRIFETLGTPTEE  235 (346)
T ss_dssp             GSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS---SHHHHHHHHHHHHCCCCTT
T ss_pred             ceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC---CHHHHHHHHHHHcCCCChh
Confidence            86532           5679999998654 5789999999999999999999998643   1111111111110000  0


Q ss_pred             hhh------hhhcCC---c-----cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          231 ELN------KLVRGT---E-----VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       231 ~~~------~~~~~~---~-----~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ...      +.+...   .     .....+..+.+++.+||+.||++|||+.|+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          236 QWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             TSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             hhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence            000      000000   0     113345789999999999999999999999864

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=8.5e-41  Score=286.40  Aligned_cols=235  Identities=17%  Similarity=0.136  Sum_probs=186.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcC--CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS--PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ..++|.....+|.|+|  |.||++..      .++|....  ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus        17 ~~~~y~i~~~lg~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   94 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAF--GKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIM   94 (302)
T ss_dssp             GGGTEEEEEEEECSTT--CCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEE
T ss_pred             CccceeecceeccCCC--eEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEE
Confidence            4567888899999999  99999821      11222221  13345678999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee----
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL----  167 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~----  167 (274)
                      |||+++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++..    
T Consensus        95 ~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  170 (302)
T 2j7t_A           95 IEFCPGGAVDAIMLE-LDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT  170 (302)
T ss_dssp             EECCTTEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH
T ss_pred             EEeCCCCcHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCcccccc
Confidence            999999999999876 345699999999999999999999999   999999999999999999999999998632    


Q ss_pred             -------cCCCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          168 -------LSDKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       168 -------~~~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                             .++..|+|||.+.     ...++.++||||||+++|+|++|..||....   ......    .. .....   
T Consensus       171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~~----~~-~~~~~---  239 (302)
T 2j7t_A          171 LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN---PMRVLL----KI-AKSDP---  239 (302)
T ss_dssp             HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSC---HHHHHH----HH-HHSCC---
T ss_pred             ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCC---HHHHHH----HH-hccCC---
Confidence                   3467899999883     5678899999999999999999999996431   111000    00 01000   


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       .....+...+..+.+++.+||+.||++|||+.++++
T Consensus       240 -~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          240 -PTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             -CCCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             -cccCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence             001234455678999999999999999999999986

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=6.6e-40  Score=309.62  Aligned_cols=230  Identities=19%  Similarity=0.167  Sum_probs=189.9

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH-------HHHH----HHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM-------RALM----ATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~----~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~   87 (274)
                      ..++|.....||+|+|  |.||++.       +++|    .........+.+..|..++..+ +||||+++++++.+.+.
T Consensus       339 ~~~~f~~~~~LG~G~f--G~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~  416 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSF--GKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR  416 (674)
T ss_dssp             -CTTEEEEEESSBTTT--BCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSE
T ss_pred             cccceEEEEEEccCCC--EEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCE
Confidence            3467888899999999  9999881       2221    1122334566678999999988 69999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++.
T Consensus       417 ~~lV~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~  491 (674)
T 3pfq_A          417 LYFVMEYVNGGDLMYHIQQ--VGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKE  491 (674)
T ss_dssp             EEEEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEE
T ss_pred             EEEEEeCcCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeec
Confidence            9999999999999999986  35799999999999999999999999   999999999999999999999999999874


Q ss_pred             c-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          168 L-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       168 ~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      .           +++.|+|||++....++.++|+||||+++|||++|..||....   .. .+            ...+.
T Consensus       492 ~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~---~~-~~------------~~~i~  555 (674)
T 3pfq_A          492 NIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED---ED-EL------------FQSIM  555 (674)
T ss_dssp             CCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS---HH-HH------------HHHHH
T ss_pred             cccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCC---HH-HH------------HHHHH
Confidence            2           3778999999999999999999999999999999999997431   11 11            11111


Q ss_pred             cCC-ccCHHHHHHHHHHHHHhhccCCCCCCCh-----hhHHh
Q 048314          237 RGT-EVDKKNLENLVKVGLWCVQDEPALRPSM-----KCVVM  272 (274)
Q Consensus       237 ~~~-~~~~~~~~~~~~li~~cl~~dp~~Rps~-----~evl~  272 (274)
                      ... .+|...+.++.+|+.+||+.||++||++     .||++
T Consensus       556 ~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~  597 (674)
T 3pfq_A          556 EHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  597 (674)
T ss_dssp             SSCCCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred             hCCCCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence            111 3555677889999999999999999998     67754

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=5.4e-41  Score=289.64  Aligned_cols=238  Identities=13%  Similarity=0.108  Sum_probs=183.6

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhc--CCCCCCcHHHHHHHHhcCCCCccceEeEEEEe----CCc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN--SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR----GSK   87 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~   87 (274)
                      ..++|.....+|.|+|  |.||++..      .++|.+.  .....+.+.+|+.++++++||||+++++++..    ...
T Consensus        27 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (317)
T 2buj_A           27 DNKHYLFIQKLGEGGF--SYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHE  104 (317)
T ss_dssp             TTEEEEEEEEEEC--C--EEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEE
T ss_pred             CCeEEEEEEEecCCCC--eEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCce
Confidence            4567888999999999  99998821      1122111  11234557799999999999999999999873    346


Q ss_pred             ceEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           88 PSTEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      .++||||+.+|+|.+++...  ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+
T Consensus       105 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~  181 (317)
T 2buj_A          105 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSM  181 (317)
T ss_dssp             EEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred             eEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence            89999999999999999853  345699999999999999999999999   9999999999999999999999999987


Q ss_pred             eecC--------------------CCCcCCCcccccCC---CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH
Q 048314          166 KLLS--------------------DKGCMAPECYKRTP---ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW  222 (274)
Q Consensus       166 ~~~~--------------------~~~~~ape~~~~~~---~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~  222 (274)
                      ....                    ++.|+|||.+....   ++.++||||||+++|+|++|..||..........  .  
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~--~--  257 (317)
T 2buj_A          182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSV--A--  257 (317)
T ss_dssp             EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCH--H--
T ss_pred             hhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchh--h--
Confidence            6532                    67799999987543   6889999999999999999999995320000000  0  


Q ss_pred             HHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          223 VYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        ..     ..... ..+.+...+..+.+++.+||+.||.+|||+.++++.|
T Consensus       258 --~~-----~~~~~-~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L  301 (317)
T 2buj_A          258 --LA-----VQNQL-SIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQL  301 (317)
T ss_dssp             --HH-----HHCC---CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --HH-----hhccC-CCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHh
Confidence              00     00000 0112334567899999999999999999999999864

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-40  Score=289.57  Aligned_cols=248  Identities=19%  Similarity=0.172  Sum_probs=182.2

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHHH----HHHHHhcCCCCCCcHHHHHHHHhcC--CCCccceEeEEEEeC----Cc
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCMR----ALMATVNSPYSPSRPLTLTSIVSRV--SWTTDIEVSSVAMRG----SK   87 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~~----~~~~~~~~~~~~~~~~~e~~~l~~l--~h~niv~l~~~~~~~----~~   87 (274)
                      ....++|...+.+|.|+|  |.||+|..    .++|.... .....+..|.+++...  +||||+++++++.+.    ..
T Consensus        33 ~~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~vavK~~~~-~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~  109 (337)
T 3mdy_A           33 RTIAKQIQMVKQIGKGRY--GEVWMGKWRGEKVAVKVFFT-TEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQ  109 (337)
T ss_dssp             TTHHHHCEEEEEEEEETT--EEEEEEEETTEEEEEEEEEG-GGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCE
T ss_pred             cccccceEEEeEeecCCC--eEEEEEEECCceEEEEEEec-cccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCc
Confidence            334578999999999999  99999822    11111111 1223345666666654  899999999999887    67


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----CCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~-----~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                      .++||||+++|+|.+++..   ..+++..++.++.|++.||.|||+.+     ..+++||||||+||+++.++.+||+||
T Consensus       110 ~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Df  186 (337)
T 3mdy_A          110 LYLITDYHENGSLYDYLKS---TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADL  186 (337)
T ss_dssp             EEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCC
T ss_pred             eEEEEeccCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeC
Confidence            8999999999999999976   36999999999999999999999752     238999999999999999999999999


Q ss_pred             ccceec---------------CCCCcCCCcccccCCCccc------cceeehhHhHHHHhhc----------CCCccccC
Q 048314          163 GLAKLL---------------SDKGCMAPECYKRTPISVK------ADVYGYGIVLLETICC----------WENMEIDA  211 (274)
Q Consensus       163 g~~~~~---------------~~~~~~ape~~~~~~~~~~------~Di~s~G~~l~el~~g----------~~p~~~~~  211 (274)
                      |++...               +++.|+|||.+.....+..      +||||||+++|||++|          ..||....
T Consensus       187 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~  266 (337)
T 3mdy_A          187 GLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLV  266 (337)
T ss_dssp             TTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred             CCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhc
Confidence            998542               3667999999987665554      9999999999999999          55554321


Q ss_pred             CChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          212 SKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .......  . ...................+..++..+.+++.+||+.||++|||+.||++.|
T Consensus       267 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  326 (337)
T 3mdy_A          267 PSDPSYE--D-MREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTL  326 (337)
T ss_dssp             CSSCCHH--H-HHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             CCCCchh--h-hHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHH
Confidence            1111100  0 0000000000000000012337788999999999999999999999999865

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=3.1e-40  Score=279.43  Aligned_cols=230  Identities=16%  Similarity=0.152  Sum_probs=183.5

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHH-----HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMA-----TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~-----~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|.....+|.|++  |.||++..      .++|     ........+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        10 ~~~y~i~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   87 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTF--GKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFF   87 (276)
T ss_dssp             ETTEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             eccEEEEeeecCCCC--eEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEE
Confidence            467888899999999  99998821      1111     1112234456789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +||||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+....
T Consensus        88 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~  162 (276)
T 2h6d_A           88 MVMEYVSGGELFDYICK--HGRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMS  162 (276)
T ss_dssp             EEEECCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCC
T ss_pred             EEEeccCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccC
Confidence            99999999999999986  35689999999999999999999999   99999999999999999999999999986543


Q ss_pred             ----------CCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          170 ----------DKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       170 ----------~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                ++.|+|||.+....+ +.++|+||||+++|+|++|..||....   .. .+.    ......       .
T Consensus       163 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~---~~-~~~----~~~~~~-------~  227 (276)
T 2h6d_A          163 DGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH---VP-TLF----KKIRGG-------V  227 (276)
T ss_dssp             C-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS---HH-HHH----HHHHHC-------C
T ss_pred             CCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc---HH-HHH----HHhhcC-------c
Confidence                      567999999987765 689999999999999999999996431   11 110    111110       0


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+...+..+.+++.+||+.||++|||+.|+++
T Consensus       228 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~  261 (276)
T 2h6d_A          228 FYIPEYLNRSVATLLMHMLQVDPLKRATIKDIRE  261 (276)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ccCchhcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence            1233445677899999999999999999999986

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=1.5e-40  Score=285.34  Aligned_cols=231  Identities=19%  Similarity=0.170  Sum_probs=187.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .+.|...+.+|.|+|  |.||+|..      .++|.....   ...+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus        21 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   98 (303)
T 3a7i_A           21 EELFTKLEKIGKGSF--GEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWII   98 (303)
T ss_dssp             GGTEEEEEEEEECSS--SEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHHHHHhhhhcccCC--eEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEE
Confidence            356888899999999  99999821      222322222   2235577999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      |||+++++|.+++..   ..+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+....  
T Consensus        99 ~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~  172 (303)
T 3a7i_A           99 MEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT  172 (303)
T ss_dssp             EECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTT
T ss_pred             EEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCcc
Confidence            999999999999964   5799999999999999999999999   99999999999999999999999999986532  


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                               ++.|+|||.+....++.++|+||||+++|+|++|..||....   .. ....    .....      ....
T Consensus       173 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~-~~~~----~~~~~------~~~~  238 (303)
T 3a7i_A          173 QIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELH---PM-KVLF----LIPKN------NPPT  238 (303)
T ss_dssp             BCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC---HH-HHHH----HHHHS------CCCC
T ss_pred             ccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcC---HH-HHHH----HhhcC------CCCC
Confidence                     556999999998889999999999999999999999996431   11 1110    00110      1112


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .+...+..+.+++.+||+.||++|||+.|+++.
T Consensus       239 ~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  271 (303)
T 3a7i_A          239 LEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH  271 (303)
T ss_dssp             CCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred             CccccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence            334456789999999999999999999999863

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.9e-40  Score=294.47  Aligned_cols=241  Identities=19%  Similarity=0.189  Sum_probs=175.2

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC----CCCCcHHHHHHHHhcCC-CCccceEeEEEEeCC--
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP----YSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGS--   86 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~----~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~--   86 (274)
                      ..++|...+.+|.|+|  |.||++.      ..++|.+...    ...+++.+|+.+++++. ||||+++++++...+  
T Consensus         7 ~~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~   84 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAY--GIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDR   84 (388)
T ss_dssp             HHTTEEEEEC---------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSS
T ss_pred             ccCceEEEEEeeeCCC--eEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCC
Confidence            3568888999999999  9999982      1122222111    22344668999999998 999999999997544  


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++|||||. |+|.+++..   ..+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++
T Consensus        85 ~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~  157 (388)
T 3oz6_A           85 DVYLVFDYME-TDLHAVIRA---NILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSR  157 (388)
T ss_dssp             CEEEEEECCS-EEHHHHHHH---TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEEecccC-cCHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccc
Confidence            6899999997 699999976   4699999999999999999999999   99999999999999999999999999986


Q ss_pred             ec--------------------------------CCCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCC
Q 048314          167 LL--------------------------------SDKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASK  213 (274)
Q Consensus       167 ~~--------------------------------~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~  213 (274)
                      ..                                +++.|+|||++.+ ..++.++||||+||++|||++|+.||..... 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~-  236 (388)
T 3oz6_A          158 SFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSST-  236 (388)
T ss_dssp             ESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-
T ss_pred             cccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCH-
Confidence            43                                3567999999876 5789999999999999999999999964311 


Q ss_pred             hhhHHHHHHHHHHHhh---hhhh---------------hhh-----cCC-------------ccCHHHHHHHHHHHHHhh
Q 048314          214 PEEIILTNWVYKCFIN---RELN---------------KLV-----RGT-------------EVDKKNLENLVKVGLWCV  257 (274)
Q Consensus       214 ~~~~~~~~~~~~~~~~---~~~~---------------~~~-----~~~-------------~~~~~~~~~~~~li~~cl  257 (274)
                        ...+.... .....   ....               ...     ...             ..+...++.+.+|+.+||
T Consensus       237 --~~~~~~i~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L  313 (388)
T 3oz6_A          237 --MNQLERII-GVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLL  313 (388)
T ss_dssp             --HHHHHHHH-HHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHC
T ss_pred             --HHHHHHHH-HhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhh
Confidence              11111110 00000   0000               000     000             011133567899999999


Q ss_pred             ccCCCCCCChhhHHhh
Q 048314          258 QDEPALRPSMKCVVMM  273 (274)
Q Consensus       258 ~~dp~~Rps~~evl~~  273 (274)
                      +.||++|||++|+++.
T Consensus       314 ~~dP~~R~t~~e~l~H  329 (388)
T 3oz6_A          314 QFNPNKRISANDALKH  329 (388)
T ss_dssp             CSSGGGSCCHHHHTTS
T ss_pred             ccCcccCCCHHHHhCC
Confidence            9999999999999863

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1e-40  Score=304.40  Aligned_cols=233  Identities=18%  Similarity=0.162  Sum_probs=186.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcC-----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS-----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.+|.|+|  |.||++..      .++|.+..     ....+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        25 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  102 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSF--GEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFY  102 (484)
T ss_dssp             HHHEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             cCceEEeeEEecCCC--EEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            467888899999999  99998821      12222221     123445789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEeccccce
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAK  166 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~d~g~~~  166 (274)
                      +||||+.+|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||++   ..++.+||+|||++.
T Consensus       103 lv~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~  177 (484)
T 3nyv_A          103 LVGEVYTGGELFDEIIS--RKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLST  177 (484)
T ss_dssp             EEECCCCSCBHHHHHHT--CSCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHH
T ss_pred             EEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeE
Confidence            99999999999999975  45799999999999999999999999   99999999999999   567899999999886


Q ss_pred             ec----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          167 LL----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       167 ~~----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      ..          +++.|+|||.+.+ .++.++||||+||++|+|++|..||...   .... +.    .....+..   .
T Consensus       178 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~---~~~~-~~----~~i~~~~~---~  245 (484)
T 3nyv_A          178 HFEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGA---NEYD-IL----KKVEKGKY---T  245 (484)
T ss_dssp             HBCCCCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS---SHHH-HH----HHHHHCCC---C
T ss_pred             EcccccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCC---CHHH-HH----HHHHcCCC---C
Confidence            43          3678999998865 6899999999999999999999999643   1111 11    11111110   0


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+.+.....+..+.+++.+||+.||++|||+.|+++
T Consensus       246 ~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~  281 (484)
T 3nyv_A          246 FELPQWKKVSESAKDLIRKMLTYVPSMRISARDALD  281 (484)
T ss_dssp             CCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence            011122345678999999999999999999999986

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=1.5e-40  Score=283.24  Aligned_cols=234  Identities=18%  Similarity=0.166  Sum_probs=182.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH---------HHHHHhcC-----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNS-----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      .++|...+.+|.|+|  |.||+|..         .++|....     ....+.+.+|+.++++++||||+++++++.+..
T Consensus        17 ~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   94 (291)
T 1u46_A           17 EKDLRLLEKLGDGSF--GVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP   94 (291)
T ss_dssp             GGGEEEEEECC------CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hhHeeeeeeecCCCc--eeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC
Confidence            467888899999999  99999831         12222211     122345779999999999999999999998765


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                       .++||||+++++|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++.
T Consensus        95 -~~~v~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~  169 (291)
T 1u46_A           95 -MKMVTELAPLGSLLDRLRK-HQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMR  169 (291)
T ss_dssp             -CEEEEECCTTCBHHHHHHH-HGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred             -ceeeEecccCCCHHHHHHh-ccCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEccccccc
Confidence             8999999999999999986 335699999999999999999999999   99999999999999999999999999987


Q ss_pred             ecC--------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhh
Q 048314          167 LLS--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRE  231 (274)
Q Consensus       167 ~~~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  231 (274)
                      ...              +..|+|||.+....++.++||||||+++|+|++ |..||....   .. .+..   .. ... 
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~---~~-~~~~---~~-~~~-  240 (291)
T 1u46_A          170 ALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN---GS-QILH---KI-DKE-  240 (291)
T ss_dssp             ECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC---HH-HHHH---HH-HTS-
T ss_pred             cccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCC---HH-HHHH---HH-Hcc-
Confidence            543              335999999988888999999999999999999 999996431   11 1100   00 000 


Q ss_pred             hhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          232 LNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                          ......+...+..+.+++.+||+.||++|||+.++++.|
T Consensus       241 ----~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l  279 (291)
T 1u46_A          241 ----GERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFL  279 (291)
T ss_dssp             ----CCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ----CCCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHH
Confidence                011123445678899999999999999999999998764

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=2.8e-41  Score=291.06  Aligned_cols=242  Identities=17%  Similarity=0.176  Sum_probs=190.7

Q ss_pred             hhHHHHhhhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCCC---CCCcHHHHHHHHhcC-CCCccceEe
Q 048314           15 SSLCTKLRNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSPY---SPSRPLTLTSIVSRV-SWTTDIEVS   79 (274)
Q Consensus        15 ~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~~---~~~~~~~e~~~l~~l-~h~niv~l~   79 (274)
                      .+.....++|...+.+|.|+|  |.||++.           ..++|......   ..+.+.+|+.++.++ +||||++++
T Consensus        20 ~~~~~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~   97 (316)
T 2xir_A           20 SKWEFPRDRLKLGKPLGRGAF--GQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   97 (316)
T ss_dssp             HHHBCCGGGEEEEEEEEECSS--EEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cceecchhheeeeeEEcCCCc--eeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence            344445678888999999999  9999983           12233322221   123567999999999 699999999


Q ss_pred             EEEEeCC-cceEEEEeCCCCCHHHHHHhCCC--------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 048314           80 SVAMRGS-KPSTEAALDLPWDLAYIIFCSAE--------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDI  144 (274)
Q Consensus        80 ~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~--------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl  144 (274)
                      +++.+.+ ..++||||+++|+|.+++.....              ..+++..++.++.|++.||.|||+.   +++|+||
T Consensus        98 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~di  174 (316)
T 2xir_A           98 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDL  174 (316)
T ss_dssp             EEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred             EEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---CcccccC
Confidence            9997754 58999999999999999986432              1289999999999999999999999   9999999


Q ss_pred             CCCceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCcccc
Q 048314          145 KPQNILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEID  210 (274)
Q Consensus       145 ~~~nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~  210 (274)
                      ||+||+++.++.+||+|||.+....             ++.|+|||.+....++.++||||||+++|+|++ |..||...
T Consensus       175 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~  254 (316)
T 2xir_A          175 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  254 (316)
T ss_dssp             SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             ccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCccc
Confidence            9999999999999999999986532             346999999988889999999999999999998 99999654


Q ss_pred             CCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          211 ASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .....   +.    .......      ....+...+..+.+++.+||+.||.+|||+.|+++.|
T Consensus       255 ~~~~~---~~----~~~~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  305 (316)
T 2xir_A          255 KIDEE---FC----RRLKEGT------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  305 (316)
T ss_dssp             CCSHH---HH----HHHHHTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             chhHH---HH----HHhccCc------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            22211   11    1111110      1123444567899999999999999999999998864

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=1.4e-40  Score=305.05  Aligned_cols=235  Identities=17%  Similarity=0.167  Sum_probs=182.6

Q ss_pred             HHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---------------CCCCcHHHHHHHHhcCCCCccce
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---------------YSPSRPLTLTSIVSRVSWTTDIE   77 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---------------~~~~~~~~e~~~l~~l~h~niv~   77 (274)
                      ...++|.....||.|+|  |.||+|..      .++|.+...               ...+.+.+|+.++++++||||++
T Consensus        33 ~i~~~Y~~~~~lG~G~~--g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~  110 (504)
T 3q5i_A           33 KIGESYFKVRKLGSGAY--GEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIK  110 (504)
T ss_dssp             CGGGTEEEEEEEEC--C--EEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCC
T ss_pred             CcccceEEEeEecccCC--eEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCe
Confidence            34577888999999999  99998821      112211111               12345679999999999999999


Q ss_pred             EeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC--
Q 048314           78 VSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW--  155 (274)
Q Consensus        78 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~--  155 (274)
                      +++++.+....++|||||++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++  
T Consensus       111 ~~~~~~~~~~~~lv~e~~~gg~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~  185 (504)
T 3q5i_A          111 LFDVFEDKKYFYLVTEFYEGGELFEQIIN--RHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSL  185 (504)
T ss_dssp             EEEEEECSSEEEEEEECCTTCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCC
T ss_pred             EEEEEEcCCEEEEEEecCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCC
Confidence            99999999999999999999999999976  35699999999999999999999999   999999999999998765  


Q ss_pred             -cEEEeccccceec----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH
Q 048314          156 -TAKISDFGLAKLL----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY  224 (274)
Q Consensus       156 -~~kl~d~g~~~~~----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~  224 (274)
                       .+||+|||++...          +++.|+|||.+. ..++.++||||+|+++|+|++|..||....   ... +.    
T Consensus       186 ~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~---~~~-~~----  256 (504)
T 3q5i_A          186 LNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQN---DQD-II----  256 (504)
T ss_dssp             SSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS---HHH-HH----
T ss_pred             ccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCC---HHH-HH----
Confidence             6999999998653          367899999886 468999999999999999999999996431   111 11    


Q ss_pred             HHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          225 KCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .....+...   .+.......+..+.+++.+||+.||.+|||+.|+++
T Consensus       257 ~~i~~~~~~---~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~  301 (504)
T 3q5i_A          257 KKVEKGKYY---FDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN  301 (504)
T ss_dssp             HHHHHCCCC---CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHcCCCC---CCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            111111000   000011233578999999999999999999999986

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=1.3e-40  Score=289.99  Aligned_cols=245  Identities=18%  Similarity=0.139  Sum_probs=185.1

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHHH----HHHHHhcCCCCCCcHHHHHHHHhc--CCCCccceEeEEEEeCC----c
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCMR----ALMATVNSPYSPSRPLTLTSIVSR--VSWTTDIEVSSVAMRGS----K   87 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~~----~~~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~----~   87 (274)
                      ....++|.....+|.|+|  |.||++..    .++|... ....+.+.+|++++..  ++||||+++++++.+.+    .
T Consensus        38 ~~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~vavK~~~-~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~  114 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRF--GEVWRGKWRGEEVAVKIFS-SREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ  114 (342)
T ss_dssp             HHHHHHCEEEEEEEEETT--EEEEEEEETTEEEEEEEEC-GGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCC
T ss_pred             ccccccEEEEeeecCCCC--cEEEEEEEcCccEEEEEeC-chhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccce
Confidence            334578999999999999  99999822    1122221 1233456788888887  78999999999998765    7


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHh--------cCCCCCcccCCCCCCceEEcCCCcEEE
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLH--------DECEPPILHCDIKPQNILMDEFWTAKI  159 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh--------~~~~~~i~h~dl~~~nil~~~~~~~kl  159 (274)
                      .++||||+++|+|.+++..   ..+++..++.++.|++.||.|||        +.   +++|+||||+||+++.++.+||
T Consensus       115 ~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~~kL  188 (342)
T 1b6c_B          115 LWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCI  188 (342)
T ss_dssp             EEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSCEEE
T ss_pred             eEEEEeecCCCcHHHHHhc---cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCCEEE
Confidence            8999999999999999976   46999999999999999999999        77   9999999999999999999999


Q ss_pred             eccccceec---------------CCCCcCCCcccccC------CCccccceeehhHhHHHHhhc----------CCCcc
Q 048314          160 SDFGLAKLL---------------SDKGCMAPECYKRT------PISVKADVYGYGIVLLETICC----------WENME  208 (274)
Q Consensus       160 ~d~g~~~~~---------------~~~~~~ape~~~~~------~~~~~~Di~s~G~~l~el~~g----------~~p~~  208 (274)
                      +|||++...               +++.|+|||.+...      .++.++||||||+++|+|++|          ..||.
T Consensus       189 ~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~  268 (342)
T 1b6c_B          189 ADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY  268 (342)
T ss_dssp             CCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT
T ss_pred             EECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCcc
Confidence            999998542               25679999998765      234789999999999999999          66775


Q ss_pred             ccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          209 IDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .........  ..+. ...........+...-.+...+..+.+++.+||+.||++|||+.||++.|
T Consensus       269 ~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L  331 (342)
T 1b6c_B          269 DLVPSDPSV--EEMR-KVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTL  331 (342)
T ss_dssp             TTSCSSCCH--HHHH-HHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHH
T ss_pred             ccCcCcccH--HHHH-HHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHH
Confidence            331111110  0000 11111111000000012346778999999999999999999999999865

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=5.3e-40  Score=294.61  Aligned_cols=235  Identities=15%  Similarity=0.148  Sum_probs=179.3

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH------HHHHHHhc----------CCCCCCcHHHHHHHHhcCCCCccceEeEEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM------RALMATVN----------SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAM   83 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~----------~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~   83 (274)
                      ..++|...+.+|.|+|  |.||++.      ..++|.+.          .......+.+|+.+|++++||||+++++++.
T Consensus       133 ~~~~y~~~~~LG~G~~--g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~  210 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGAC--GEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD  210 (419)
T ss_dssp             HHTTEEEEEEEEECSS--SEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE
T ss_pred             hhccEEEEeEEeeCCC--eEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe
Confidence            3567888899999999  9999981      11111111          1123456889999999999999999999975


Q ss_pred             eCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC---CcEEEe
Q 048314           84 RGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF---WTAKIS  160 (274)
Q Consensus        84 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~---~~~kl~  160 (274)
                       .+..++||||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.+   ..+||+
T Consensus       211 -~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~  284 (419)
T 3i6u_A          211 -AEDYYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKIT  284 (419)
T ss_dssp             -SSEEEEEEECCTTCBGGGGTSS--SCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEEC
T ss_pred             -cCceEEEEEcCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEe
Confidence             4558999999999999999875  46799999999999999999999999   99999999999999654   459999


Q ss_pred             ccccceecC----------CCCcCCCccccc---CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH
Q 048314          161 DFGLAKLLS----------DKGCMAPECYKR---TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF  227 (274)
Q Consensus       161 d~g~~~~~~----------~~~~~ape~~~~---~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~  227 (274)
                      |||+++...          ++.|+|||.+..   ..++.++||||||+++|+|++|..||..........   .    ..
T Consensus       285 DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~---~----~i  357 (419)
T 3i6u_A          285 DFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLK---D----QI  357 (419)
T ss_dssp             CSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHH---H----HH
T ss_pred             ecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHH---H----HH
Confidence            999986543          678999999853   568899999999999999999999997542221110   0    00


Q ss_pred             hhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 INRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+...   ...+.....+..+.+++.+||+.||++|||++|+++
T Consensus       358 ~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          358 TSGKYN---FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  399 (419)
T ss_dssp             HTTCCC---CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             hcCCCC---CCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence            111000   000011124578999999999999999999999986

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=1.7e-39  Score=295.58  Aligned_cols=240  Identities=15%  Similarity=0.088  Sum_probs=189.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcCCC-CccceEeEEEEeCCcceEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRVSW-TTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .++|.....||.|+|  |.||+|.      ..++|........+.+.+|+++++.++| +++..+..++.+.+..++|||
T Consensus         6 ~~~y~i~~~LG~G~f--G~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme   83 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSF--GEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD   83 (483)
T ss_dssp             TTTEECCCCCEECSS--CEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEEEeeCCC--EEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence            467888999999999  9999983      1223344444566779999999999997 555666666677888999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEeccccceec--
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~d~g~~~~~--  168 (274)
                      |+ +++|.+++.. ....+++..++.++.|++.||.|||+.   +|+||||||+|||+   +.++.+||+|||+++..  
T Consensus        84 ~~-g~sL~~ll~~-~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~  158 (483)
T 3sv0_A           84 LL-GPSLEDLFNF-CSRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRD  158 (483)
T ss_dssp             CC-CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred             CC-CCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceeccC
Confidence            99 8999999985 346799999999999999999999999   99999999999999   58899999999998643  


Q ss_pred             ----------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          169 ----------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       169 ----------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                                      ++..|+|||.+....++.++|||||||++|||++|..||...........+....... .....
T Consensus       159 ~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~-~~~~~  237 (483)
T 3sv0_A          159 TSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKK-VATSI  237 (483)
T ss_dssp             TTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHH-HHSCH
T ss_pred             CccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhcc-ccccH
Confidence                            2567999999999999999999999999999999999997653332222221111111 11111


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..      .....+.++.+++..||+.||++||++.+|++.|
T Consensus       238 ~~------l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L  273 (483)
T 3sv0_A          238 EA------LCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLF  273 (483)
T ss_dssp             HH------HHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred             HH------HhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence            11      1123357899999999999999999999998764

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1.1e-40  Score=283.22  Aligned_cols=234  Identities=16%  Similarity=0.160  Sum_probs=185.5

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--------CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--------YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      .++|.....+|.|+|  |.||++..      .++|.....        ...+.+.+|+.++++++||||+++++++.+.+
T Consensus         4 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   81 (283)
T 3bhy_A            4 EDHYEMGEELGSGQF--AIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKT   81 (283)
T ss_dssp             HHHEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hhhhhhHHhhcccCc--eEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCC
Confidence            357888899999999  99999821      112222111        12345779999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC----cEEEecc
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW----TAKISDF  162 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~----~~kl~d~  162 (274)
                      ..++||||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++    .++|+||
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~df  156 (283)
T 3bhy_A           82 DVVLILELVSGGELFDFLAE--KESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDF  156 (283)
T ss_dssp             EEEEEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCC
T ss_pred             eEEEEEeecCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEec
Confidence            99999999999999999975  35699999999999999999999999   999999999999998776    7999999


Q ss_pred             ccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          163 GLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       163 g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      |.+....          ++.|+|||.+....++.++|+||||+++|+|++|..||....   ....+..     ......
T Consensus       157 g~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~~~-----~~~~~~  228 (283)
T 3bhy_A          157 GIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGET---KQETLTN-----ISAVNY  228 (283)
T ss_dssp             TTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSS---HHHHHHH-----HHTTCC
T ss_pred             ccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcc---hHHHHHH-----hHhccc
Confidence            9987542          567999999988889999999999999999999999996431   1111100     000000


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         ..+.......+..+.+++.+||+.||++|||+.|+++
T Consensus       229 ---~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  265 (283)
T 3bhy_A          229 ---DFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLE  265 (283)
T ss_dssp             ---CCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ---CCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence               0000111233567899999999999999999999986

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=1.2e-40  Score=299.73  Aligned_cols=183  Identities=17%  Similarity=0.157  Sum_probs=155.1

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-CCCCcHHHHHHHHhcC------CCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-YSPSRPLTLTSIVSRV------SWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-~~~~~~~~e~~~l~~l------~h~niv~l~~~~~~~~~~   88 (274)
                      ++|...+.||.|+|  |.||+|..      .++|.+... ...+.+.+|+.+++.+      +|+||+++++++...+..
T Consensus        97 ~ry~~~~~LG~G~f--g~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  174 (429)
T 3kvw_A           97 YRYEVLKVIGKGSF--GQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI  174 (429)
T ss_dssp             TTEEEEEEEEESSS--EEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred             CcEEEEEEcccCcc--EEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence            45777899999999  99999821      122222221 1123456788888876      577999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc--EEEeccccce
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT--AKISDFGLAK  166 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~--~kl~d~g~~~  166 (274)
                      ++||||+. ++|.+++.......+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.  +||+|||++.
T Consensus       175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~  250 (429)
T 3kvw_A          175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGSSC  250 (429)
T ss_dssp             EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred             EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecccce
Confidence            99999996 6999999986666799999999999999999999999   9999999999999998877  9999999986


Q ss_pred             ecC--------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCcccc
Q 048314          167 LLS--------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEID  210 (274)
Q Consensus       167 ~~~--------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~  210 (274)
                      ...        ++.|+|||++....++.++|||||||++|||++|..||...
T Consensus       251 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          251 YEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             ETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence            533        66799999999989999999999999999999999999644

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=1.9e-40  Score=288.42  Aligned_cols=243  Identities=16%  Similarity=0.181  Sum_probs=185.0

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCC----CCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYS----PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      ..++|.....+|.|+|  |.||++..      .++|.......    .+.+.+|+.++++++||||+++++++.+.+..+
T Consensus        23 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  100 (331)
T 4aaa_A           23 SMEKYENLGLVGEGSY--GMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWY  100 (331)
T ss_dssp             CGGGEEEEEEGGGGTT--SSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             hhhhheeeeEEeecCC--EEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEE
Confidence            3467778899999999  99999822      12222222211    233568999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-  168 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-  168 (274)
                      +||||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+... 
T Consensus       101 lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  175 (331)
T 4aaa_A          101 LVFEFVDHTILDDLELF--PNGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLA  175 (331)
T ss_dssp             EEEECCSEEHHHHHHHS--TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC----
T ss_pred             EEEecCCcchHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeec
Confidence            99999999999988764  45799999999999999999999999   9999999999999999999999999998643 


Q ss_pred             ----------CCCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH----------HH
Q 048314          169 ----------SDKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK----------CF  227 (274)
Q Consensus       169 ----------~~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~----------~~  227 (274)
                                ++..|+|||.+... .++.++||||||+++|+|++|..||.....   ...+......          .+
T Consensus       176 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~  252 (331)
T 4aaa_A          176 APGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSD---IDQLYHIMMCLGNLIPRHQELF  252 (331)
T ss_dssp             --------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHHHHHHCSCCHHHHHHH
T ss_pred             CCccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCc---HHHHHHHHHHhCCCChhhhhHh
Confidence                      25679999998765 688999999999999999999999965421   1111111100          00


Q ss_pred             hhhh-hhhh-----hcCC---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 INRE-LNKL-----VRGT---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 ~~~~-~~~~-----~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .... ....     ....   ......+..+.+++.+||+.||++|||++|+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          253 NKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             HHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             hhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            0000 0000     0000   011234678999999999999999999999986

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.6e-40  Score=292.28  Aligned_cols=243  Identities=17%  Similarity=0.088  Sum_probs=181.3

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeC------
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG------   85 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------   85 (274)
                      ....++|...+.||.|+|  |.||++..      .++|.+.  .+.....+|+.+++.++||||+++++++...      
T Consensus         3 ~~~~~~y~~~~~lG~G~f--g~V~~a~~~~~~~~vAiK~~~--~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~   78 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSF--GIVCEVFDIESGKRFALKKVL--QDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK   78 (383)
T ss_dssp             ---CTTEEEEEEEECC-C--EEEEEEEETTTCCEEEEEEEE--CCTTSCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred             ccccceEEEEEEEEeccC--EEEEEEEECCCCCEEEEEEEe--cCcchHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence            445678999999999999  99999821      1122222  2344456899999999999999999998543      


Q ss_pred             --------------------------------CcceEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHH
Q 048314           86 --------------------------------SKPSTEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYL  131 (274)
Q Consensus        86 --------------------------------~~~~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~l  131 (274)
                                                      ...++||||++ |+|.+.+...  ....+++..++.++.|++.||.||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L  157 (383)
T 3eb0_A           79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI  157 (383)
T ss_dssp             -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                            33789999998 5888877642  456799999999999999999999


Q ss_pred             hcCCCCCcccCCCCCCceEEc-CCCcEEEeccccceecC----------CCCcCCCcccccC-CCccccceeehhHhHHH
Q 048314          132 HDECEPPILHCDIKPQNILMD-EFWTAKISDFGLAKLLS----------DKGCMAPECYKRT-PISVKADVYGYGIVLLE  199 (274)
Q Consensus       132 h~~~~~~i~h~dl~~~nil~~-~~~~~kl~d~g~~~~~~----------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~e  199 (274)
                      |+.   +++||||||+||+++ .++.+||+|||.+....          +..|+|||.+.+. .++.++||||+||++|+
T Consensus       158 H~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~e  234 (383)
T 3eb0_A          158 HSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGE  234 (383)
T ss_dssp             HTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHH
T ss_pred             HHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHH
Confidence            999   999999999999997 68899999999997542          5679999988764 48999999999999999


Q ss_pred             HhhcCCCccccCCChhhHHHHHHHHHHHhh---h-------hhhhhhc----CC----ccCHHHHHHHHHHHHHhhccCC
Q 048314          200 TICCWENMEIDASKPEEIILTNWVYKCFIN---R-------ELNKLVR----GT----EVDKKNLENLVKVGLWCVQDEP  261 (274)
Q Consensus       200 l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~----~~----~~~~~~~~~~~~li~~cl~~dp  261 (274)
                      |++|..||....   ....+..... ....   .       ......-    ..    ..+...+..+.+++.+||+.||
T Consensus       235 ll~g~~pf~~~~---~~~~~~~i~~-~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  310 (383)
T 3eb0_A          235 LILGKPLFSGET---SIDQLVRIIQ-IMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEP  310 (383)
T ss_dssp             HHHSSCSSCCSS---HHHHHHHHHH-HHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSG
T ss_pred             HHhCCCCCCCCC---hHHHHHHHHH-HhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCCh
Confidence            999999997431   1111111111 0000   0       0000000    00    1334456789999999999999


Q ss_pred             CCCCChhhHHh
Q 048314          262 ALRPSMKCVVM  272 (274)
Q Consensus       262 ~~Rps~~evl~  272 (274)
                      ++|||+.|+++
T Consensus       311 ~~R~t~~e~l~  321 (383)
T 3eb0_A          311 DLRINPYEAMA  321 (383)
T ss_dssp             GGSCCHHHHHT
T ss_pred             hhCCCHHHHhc
Confidence            99999999986

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=279.36  Aligned_cols=232  Identities=19%  Similarity=0.153  Sum_probs=182.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHH------HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEE--eCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMA------TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAM--RGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~------~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~   86 (274)
                      .++|.....+|.|+|  |.||++..      .++|      ........+.+.+|+.++++++||||+++++++.  +..
T Consensus         4 ~~~y~i~~~lg~G~~--g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   81 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSY--GKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQ   81 (305)
T ss_dssp             -CCBCCCCEEEECSS--CEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---
T ss_pred             ccceeEeeEEecCCC--eEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCC
Confidence            467888999999999  99998821      0111      1111233456789999999999999999999984  456


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++||||+.++ |.+++.......+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||.+.
T Consensus        82 ~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~  157 (305)
T 2wtk_C           82 KMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAE  157 (305)
T ss_dssp             CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             eEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeecccccc
Confidence            789999999876 88888876667899999999999999999999999   99999999999999999999999999986


Q ss_pred             ec-------------CCCCcCCCcccccCC--CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhh
Q 048314          167 LL-------------SDKGCMAPECYKRTP--ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRE  231 (274)
Q Consensus       167 ~~-------------~~~~~~ape~~~~~~--~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  231 (274)
                      ..             +++.|+|||.+....  ++.++||||||+++|+|++|..||....   .. ...    ...... 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~-~~~----~~i~~~-  228 (305)
T 2wtk_C          158 ALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN---IY-KLF----ENIGKG-  228 (305)
T ss_dssp             ECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS---HH-HHH----HHHHHC-
T ss_pred             ccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch---HH-HHH----HHHhcC-
Confidence            53             256799999987643  3679999999999999999999997431   11 010    111111 


Q ss_pred             hhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          232 LNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                            ....+...+..+.+++.+||+.||++|||+.|+++.
T Consensus       229 ------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          229 ------SYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             ------CCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             ------CCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence                  112344566789999999999999999999999863

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.9e-40  Score=300.64  Aligned_cols=244  Identities=16%  Similarity=0.164  Sum_probs=171.8

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeC-----C
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG-----S   86 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~   86 (274)
                      ++|...+.||.|+|  |.||++.      ..++|.+...    ...+++.+|+.+|++++|||||++++++...     .
T Consensus        53 ~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~  130 (458)
T 3rp9_A           53 DRYEIRHLIGTGSY--GHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD  130 (458)
T ss_dssp             TTEEECCC---------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             CCeEEeeEeeecCC--eEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence            67888999999999  9999981      1122222211    1234577999999999999999999998543     5


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++||||+. |+|.+++..  ...+++..++.++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++
T Consensus       131 ~~~lv~e~~~-~~L~~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~  204 (458)
T 3rp9_A          131 ELYVVLEIAD-SDFKKLFRT--PVYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLAR  204 (458)
T ss_dssp             CEEEEECCCS-EEHHHHHHS--SCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred             eEEEEEeccc-cchhhhccc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccch
Confidence            6899999974 799999975  46799999999999999999999999   99999999999999999999999999987


Q ss_pred             ecC--------------------------------------CCCcCCCccc-ccCCCccccceeehhHhHHHHhh-----
Q 048314          167 LLS--------------------------------------DKGCMAPECY-KRTPISVKADVYGYGIVLLETIC-----  202 (274)
Q Consensus       167 ~~~--------------------------------------~~~~~ape~~-~~~~~~~~~Di~s~G~~l~el~~-----  202 (274)
                      ...                                      ++.|+|||++ ....++.++|||||||++|||++     
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~  284 (458)
T 3rp9_A          205 TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKEN  284 (458)
T ss_dssp             CTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTT
T ss_pred             hccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhcccc
Confidence            542                                      6679999976 45679999999999999999998     


Q ss_pred             ------cCCCccccCCCh----------------hhHHHHHHHHHHHhh-----------hhhhhhhcC---C------c
Q 048314          203 ------CWENMEIDASKP----------------EEIILTNWVYKCFIN-----------RELNKLVRG---T------E  240 (274)
Q Consensus       203 ------g~~p~~~~~~~~----------------~~~~~~~~~~~~~~~-----------~~~~~~~~~---~------~  240 (274)
                            |+++|......+                ........+......           ......+..   .      .
T Consensus       285 ~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (458)
T 3rp9_A          285 VAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAE  364 (458)
T ss_dssp             CSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGG
T ss_pred             ccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHH
Confidence                  555553321000                000111111111000           000000000   0      1


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .....+..+.+|+.+||+.||++|||++|+++.
T Consensus       365 ~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~H  397 (458)
T 3rp9_A          365 RFPASSADAIHLLKRMLVFNPNKRITINECLAH  397 (458)
T ss_dssp             GSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HCCCCCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            122346788999999999999999999999863

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=3.6e-40  Score=286.03  Aligned_cols=239  Identities=14%  Similarity=0.147  Sum_probs=184.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEe--CCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMR--GSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~lv   91 (274)
                      .++|...+.||.|+|  |.||++.      ..++|... ....+.+.+|+.++++++ ||||+++++++.+  ....++|
T Consensus        35 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~-~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv  111 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKY--SEVFEAINITNNEKVVVKILK-PVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  111 (330)
T ss_dssp             GGGEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEC-SCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred             CCceEEEEEecccCC--eEEEEEEECCCCcEEEEEEec-ccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence            366778899999999  9999982      11222222 234566889999999998 9999999999987  6678999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEeccccceecC-
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKISDFGLAKLLS-  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~d~g~~~~~~-  169 (274)
                      |||+.+++|.+++..     +++..++.++.|++.||.|||+.   +++||||||+||+++.++ .++|+|||++.... 
T Consensus       112 ~e~~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~  183 (330)
T 3nsz_A          112 FEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP  183 (330)
T ss_dssp             EECCCCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             EeccCchhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCC
Confidence            999999999999853     89999999999999999999999   999999999999999766 89999999997533 


Q ss_pred             ---------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh---
Q 048314          170 ---------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV---  236 (274)
Q Consensus       170 ---------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  236 (274)
                               +..|+|||.+.. ..++.++||||||+++|+|++|..||.........  +.... ...........+   
T Consensus       184 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~--l~~~~-~~~~~~~~~~~~~~~  260 (330)
T 3nsz_A          184 GQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQ--LVRIA-KVLGTEDLYDYIDKY  260 (330)
T ss_dssp             TCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHH--HHHHH-HHHCHHHHHHHHHHT
T ss_pred             CCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHH--HHHHH-HhcCCchhhhHHHHh
Confidence                     556999999876 56899999999999999999999999644222111  11111 110111110000   


Q ss_pred             ------------c-----------CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          237 ------------R-----------GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       237 ------------~-----------~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                                  .           ....+...+..+.+++.+||+.||++|||++|+++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h  320 (330)
T 3nsz_A          261 NIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  320 (330)
T ss_dssp             TCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             ccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence                        0           001122246789999999999999999999999863

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=3.7e-40  Score=278.80  Aligned_cols=234  Identities=20%  Similarity=0.176  Sum_probs=186.6

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ..++|.....+|.|++  |.||++..      .++|....   ....+.+.+|+.++++++||||+++++++.+.+..++
T Consensus         5 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   82 (276)
T 2yex_A            5 FVEDWDLVQTLGEGAY--GEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYL   82 (276)
T ss_dssp             HHHHEEEEEEEEECSS--SEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             eecceEEEEEeecCCC--cEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEE
Confidence            3467888999999999  99998821      11222211   1223557799999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      ||||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.+...  
T Consensus        83 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~  157 (276)
T 2yex_A           83 FLEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRY  157 (276)
T ss_dssp             EEECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEE
T ss_pred             EEEecCCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCC
Confidence            9999999999999864  45699999999999999999999999   9999999999999999999999999998643  


Q ss_pred             -----------CCCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          169 -----------SDKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       169 -----------~~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                                 ++..|+|||.+....+ +.++|+||||+++|+|++|..||.........  ...+     ....  .  
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~--~~~~-----~~~~--~--  226 (276)
T 2yex_A          158 NNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE--YSDW-----KEKK--T--  226 (276)
T ss_dssp             TTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHH--HHHH-----HTTC--T--
T ss_pred             CcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHH--HHHh-----hhcc--c--
Confidence                       2567999999987665 78999999999999999999999754222111  1111     0000  0  


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       ........+..+.+++.+||+.||++|||+.|+++
T Consensus       227 -~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          227 -YLNPWKKIDSAPLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             -TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             -ccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence             00112244567899999999999999999999986

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=6.1e-40  Score=287.29  Aligned_cols=241  Identities=17%  Similarity=0.137  Sum_probs=181.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEe------
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR------   84 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------   84 (274)
                      .++|...+.+|.|+|  |.||++..      .++|.+...    .....+.+|+.++++++||||+++++++.+      
T Consensus        16 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   93 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTF--GEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYN   93 (351)
T ss_dssp             GGGEEEEEECSSCST--TSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-----
T ss_pred             ccceeEEEEEecCCC--cEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccc
Confidence            467888999999999  99999821      122222211    223356799999999999999999999977      


Q ss_pred             --CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           85 --GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        85 --~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                        .+..++||||+.+ +|.+.+.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+||
T Consensus        94 ~~~~~~~lv~e~~~~-~l~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Df  168 (351)
T 3mi9_A           94 RCKGSIYLVFDFCEH-DLAGLLSN-VLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADF  168 (351)
T ss_dssp             ---CEEEEEEECCSE-EHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred             cCCceEEEEEeccCC-CHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccc
Confidence              3468999999974 88888876 345699999999999999999999999   9999999999999999999999999


Q ss_pred             ccceecC---------------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH
Q 048314          163 GLAKLLS---------------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC  226 (274)
Q Consensus       163 g~~~~~~---------------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~  226 (274)
                      |++....               ++.|+|||.+.+ ..++.++||||||+++|+|++|..||....   .. .....+...
T Consensus       169 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~---~~-~~~~~i~~~  244 (351)
T 3mi9_A          169 GLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNT---EQ-HQLALISQL  244 (351)
T ss_dssp             TTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS---HH-HHHHHHHHH
T ss_pred             hhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCC---hH-HHHHHHHHH
Confidence            9986532               566999998876 457999999999999999999999997431   11 111111111


Q ss_pred             Hhhh---hhhh-----h------hcCCccCH-------HHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          227 FINR---ELNK-----L------VRGTEVDK-------KNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       227 ~~~~---~~~~-----~------~~~~~~~~-------~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....   ....     .      ........       ..++.+.+++.+||+.||++|||++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  311 (351)
T 3mi9_A          245 CGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  311 (351)
T ss_dssp             HCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence            0000   0000     0      00000000       11456899999999999999999999986

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1.8e-40  Score=294.48  Aligned_cols=247  Identities=17%  Similarity=0.147  Sum_probs=186.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-CCCCcHHHHHHHHhcCC--------CCccceEeEEEE--
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-YSPSRPLTLTSIVSRVS--------WTTDIEVSSVAM--   83 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-~~~~~~~~e~~~l~~l~--------h~niv~l~~~~~--   83 (274)
                      .++|...+.||.|+|  |.||++..      .++|.+... ...+.+.+|+.++++++        |+||+++++++.  
T Consensus        36 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~  113 (397)
T 1wak_A           36 NGRYHVIRKLGWGHF--STVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS  113 (397)
T ss_dssp             TTTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE
T ss_pred             CCeEEEEEEeeecCC--eeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec
Confidence            367888899999999  99999921      122222221 22345678999999986        788999999987  


Q ss_pred             --eCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC------
Q 048314           84 --RGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW------  155 (274)
Q Consensus        84 --~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~------  155 (274)
                        +....++||||+ +++|.+++.......+++..++.++.|++.||.|||+++  +++||||||+||+++.++      
T Consensus       114 ~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~  190 (397)
T 1wak_A          114 GVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRL  190 (397)
T ss_dssp             ETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHH
T ss_pred             CCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhh
Confidence              456789999999 567777776645567999999999999999999999853  899999999999998765      


Q ss_pred             -------------------------------------------cEEEeccccceec--------CCCCcCCCcccccCCC
Q 048314          156 -------------------------------------------TAKISDFGLAKLL--------SDKGCMAPECYKRTPI  184 (274)
Q Consensus       156 -------------------------------------------~~kl~d~g~~~~~--------~~~~~~ape~~~~~~~  184 (274)
                                                                 .+||+|||.+...        ++..|+|||++....+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~  270 (397)
T 1wak_A          191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGY  270 (397)
T ss_dssp             HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCC
T ss_pred             hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCC
Confidence                                                       7999999998754        3678999999998889


Q ss_pred             ccccceeehhHhHHHHhhcCCCccccCCChh--hHHHHHHHHHHHhh--------hhhh-h-------------------
Q 048314          185 SVKADVYGYGIVLLETICCWENMEIDASKPE--EIILTNWVYKCFIN--------RELN-K-------------------  234 (274)
Q Consensus       185 ~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~-~-------------------  234 (274)
                      +.++|||||||++|+|++|..||........  .......+......        .... .                   
T Consensus       271 ~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (397)
T 1wak_A          271 NTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGL  350 (397)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCH
T ss_pred             CcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcch
Confidence            9999999999999999999999975433221  11111111111100        0000 0                   


Q ss_pred             ---hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          235 ---LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       235 ---~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         .......+...+..+.+|+.+||+.||++|||++|+++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          351 FEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             hHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence               00111346677889999999999999999999999986

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=2.3e-40  Score=311.90  Aligned_cols=234  Identities=15%  Similarity=0.144  Sum_probs=187.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ..++|...+.||+|+|  |.||+|..         .++|.....   ...+.+.+|+.++++++||||+++++++. .+.
T Consensus       388 ~~~~y~i~~~LG~G~f--G~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~  464 (656)
T 2j0j_A          388 QRERIELGRCIGEGQF--GDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENP  464 (656)
T ss_dssp             CGGGEEEEEEEECCSS--CCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSS
T ss_pred             ccccEEEeeEEeeCCC--EEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCc
Confidence            3456777888999999  99999832         112222111   11255789999999999999999999985 456


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++..
T Consensus       465 ~~lv~E~~~~g~L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~  540 (656)
T 2j0j_A          465 VWIIMELCTLGELRSFLQV-RKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRY  540 (656)
T ss_dssp             CEEEEECCTTCBHHHHHHH-TTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCS
T ss_pred             eEEEEEcCCCCcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCee
Confidence            8999999999999999986 345699999999999999999999999   999999999999999999999999999875


Q ss_pred             cC------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          168 LS------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       168 ~~------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      ..            ++.|+|||.+....++.++||||||+++|||++ |..||....   .. ....    ...++    
T Consensus       541 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~---~~-~~~~----~i~~~----  608 (656)
T 2j0j_A          541 MEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK---NN-DVIG----RIENG----  608 (656)
T ss_dssp             CCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC---HH-HHHH----HHHHT----
T ss_pred             cCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCC---HH-HHHH----HHHcC----
Confidence            43            346999999988889999999999999999997 899996431   11 1111    11111    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        .....+...+..+.+++.+||+.||++|||+.+|++.|
T Consensus       609 --~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L  646 (656)
T 2j0j_A          609 --ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQL  646 (656)
T ss_dssp             --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --CCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence              11124556678899999999999999999999998864

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=1.1e-40  Score=289.64  Aligned_cols=236  Identities=17%  Similarity=0.200  Sum_probs=186.0

Q ss_pred             hhhcccc-ccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcc
Q 048314           21 LRNFCRS-SLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~-~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~   88 (274)
                      .+.|... +.||.|+|  |.||++..      .++|.+...    .....+.+|+.++.++. ||||+++++++.+.+..
T Consensus        27 ~~~y~~~~~~lG~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~  104 (327)
T 3lm5_A           27 NNFYILTSKELGRGKF--AVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEI  104 (327)
T ss_dssp             HHHEEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             hhEEeeccceeCCCCC--eEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeE
Confidence            4444444 78999999  99999821      122222211    22345779999999996 69999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEeccccc
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGLA  165 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~d~g~~  165 (274)
                      ++||||+.+|+|.+++.......+++..++.++.|++.||.|||+.   +++||||||+||+++.   ++.+||+|||++
T Consensus       105 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a  181 (327)
T 3lm5_A          105 ILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVDFGMS  181 (327)
T ss_dssp             EEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEECCGGGC
T ss_pred             EEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEeeCccc
Confidence            9999999999999999764556799999999999999999999999   9999999999999987   789999999998


Q ss_pred             eec----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          166 KLL----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       166 ~~~----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      ...          +++.|+|||.+....++.++||||||+++|+|++|..||....   .......     ....   ..
T Consensus       182 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~---~~~~~~~-----i~~~---~~  250 (327)
T 3lm5_A          182 RKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGED---NQETYLN-----ISQV---NV  250 (327)
T ss_dssp             EEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHHH-----HHHT---CC
T ss_pred             cccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC---chHHHHH-----HHhc---cc
Confidence            754          3668999999998899999999999999999999999996431   1111000     0000   00


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      -.+.......+..+.+++.+||+.||++|||++|+++
T Consensus       251 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          251 DYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             CCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence            0111233355678999999999999999999999986

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=6e-40  Score=287.90  Aligned_cols=251  Identities=18%  Similarity=0.113  Sum_probs=178.0

Q ss_pred             hhhhHHHHhhhccccccCCCCCCCCcchhHHH-------HHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           13 ARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCM-------RALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        13 ~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      +..+.....++|...+.+|.|+|  |.||+|.       +++|...........+.+|++.++.++||||+++++++.+.
T Consensus        14 ~~~~~~~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~   91 (360)
T 3e3p_A           14 ADERSRKEMDRFQVERMAGQGTF--GTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTL   91 (360)
T ss_dssp             SSHHHHHHHTTEEEC------------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEE
T ss_pred             hhhhchhhccceEEEEEEecCCC--eEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhcc
Confidence            44556677889999999999999  9999882       22232333334566778899999999999999999999764


Q ss_pred             Cc-------ceEEEEeCCCCCHHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHh--cCCCCCcccCCCCCCceEEcC-
Q 048314           86 SK-------PSTEAALDLPWDLAYIIFC--SAERNPYWNQRVRIALDVAKGILYLH--DECEPPILHCDIKPQNILMDE-  153 (274)
Q Consensus        86 ~~-------~~lv~e~~~~gsL~~~l~~--~~~~~l~~~~~~~~~~~i~~~l~~lh--~~~~~~i~h~dl~~~nil~~~-  153 (274)
                      +.       .++||||+++ +|.+.+..  .....+++..++.++.|++.||.|||  +.   +++||||||+||+++. 
T Consensus        92 ~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~  167 (360)
T 3e3p_A           92 GERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEA  167 (360)
T ss_dssp             CSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETT
T ss_pred             ccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCC
Confidence            33       7899999986 55555442  14567899999999999999999999  88   9999999999999996 


Q ss_pred             CCcEEEeccccceecC----------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH
Q 048314          154 FWTAKISDFGLAKLLS----------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW  222 (274)
Q Consensus       154 ~~~~kl~d~g~~~~~~----------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~  222 (274)
                      ++.+||+|||++....          ++.|+|||.+... .++.++||||||+++|+|++|..||....   ....+...
T Consensus       168 ~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~---~~~~~~~~  244 (360)
T 3e3p_A          168 DGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDN---SAGQLHEI  244 (360)
T ss_dssp             TTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHHHH
T ss_pred             CCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCC---hHHHHHHH
Confidence            8999999999987543          5679999998654 48999999999999999999999997542   11111111


Q ss_pred             HHHHHh--hhhhh---------hhhcCC---------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          223 VYKCFI--NRELN---------KLVRGT---------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       223 ~~~~~~--~~~~~---------~~~~~~---------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ......  .....         ......         ..+...+..+.+++.+||+.||++|||+.|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  314 (360)
T 3e3p_A          245 VRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC  314 (360)
T ss_dssp             HHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence            110000  00000         000000         112235678999999999999999999999986

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.1e-40  Score=291.08  Aligned_cols=235  Identities=14%  Similarity=0.105  Sum_probs=187.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH---------HHHHHhc------CCCCCCcHHHHHHHHhcC-CCCccceEeEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVN------SPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMR   84 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~------~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~   84 (274)
                      .++|...+.||.|+|  |.||++..         .++|.+.      .....+.+.+|+.+++++ +||||+++++++.+
T Consensus        53 ~~~y~~~~~lG~G~~--g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~  130 (355)
T 1vzo_A           53 IENFELLKVLGTGAY--GKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT  130 (355)
T ss_dssp             GGGEEEEEEEEETTT--EEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE
T ss_pred             ccceEEEEEeccCCC--EEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEee
Confidence            368888999999999  99997632         1122221      113345677899999999 59999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      .+..++||||+++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+
T Consensus       131 ~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~  205 (355)
T 1vzo_A          131 ETKLHLILDYINGGELFTHLSQ--RERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGL  205 (355)
T ss_dssp             TTEEEEEECCCCSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSE
T ss_pred             CceEEEEeecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCC
Confidence            9999999999999999999986  35699999999999999999999999   999999999999999999999999999


Q ss_pred             ceec------------CCCCcCCCccccc--CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh
Q 048314          165 AKLL------------SDKGCMAPECYKR--TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR  230 (274)
Q Consensus       165 ~~~~------------~~~~~~ape~~~~--~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      ++..            +++.|+|||++..  ..++.++||||||+++|+|++|..||...........+....    .  
T Consensus       206 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~----~--  279 (355)
T 1vzo_A          206 SKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRI----L--  279 (355)
T ss_dssp             EEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHH----H--
T ss_pred             CeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHH----h--
Confidence            8643            3678999999875  347889999999999999999999997543222211111110    0  


Q ss_pred             hhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCC-----ChhhHHhh
Q 048314          231 ELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRP-----SMKCVVMM  273 (274)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~~  273 (274)
                           ......+...+..+.+++.+||+.||++||     |+.|+++.
T Consensus       280 -----~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h  322 (355)
T 1vzo_A          280 -----KSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH  322 (355)
T ss_dssp             -----HCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred             -----ccCCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence                 011134555667899999999999999999     99999864

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=3.7e-40  Score=286.20  Aligned_cols=246  Identities=16%  Similarity=0.134  Sum_probs=187.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-------HHHHHhcCC-CCCCcHHHHHHHHhcCCCCc------cceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-------ALMATVNSP-YSPSRPLTLTSIVSRVSWTT------DIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-------~~~~~~~~~-~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~~   86 (274)
                      .++|...+.+|.|+|  |.||++..       .++|..... ...+.+.+|+.+++.++|+|      ++++++++.+.+
T Consensus        13 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~   90 (339)
T 1z57_A           13 SARYEIVDTLGEGAF--GKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG   90 (339)
T ss_dssp             TTTEEEEEEEEEETT--EEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT
T ss_pred             cCceEEEEEEecCCC--eEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC
Confidence            357888899999999  99998732       112222211 12345678999999987765      999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-------------
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-------------  153 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-------------  153 (274)
                      ..++||||+ +++|.+++.......+++..++.++.|++.||.|||+.   +++||||||+||+++.             
T Consensus        91 ~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~  166 (339)
T 1z57_A           91 HICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKR  166 (339)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----C
T ss_pred             cEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCcccc
Confidence            999999999 88999999875556799999999999999999999999   9999999999999987             


Q ss_pred             ------CCcEEEeccccceecC--------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHH
Q 048314          154 ------FWTAKISDFGLAKLLS--------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL  219 (274)
Q Consensus       154 ------~~~~kl~d~g~~~~~~--------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~  219 (274)
                            ++.+||+|||.+....        ++.|+|||.+....++.++||||||+++|||++|..||...........+
T Consensus       167 ~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~  246 (339)
T 1z57_A          167 DERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMM  246 (339)
T ss_dssp             EEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHH
T ss_pred             ccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Confidence                  6679999999987543        66799999999888999999999999999999999999754211110000


Q ss_pred             HHHHHH----HHhh-------------------------hhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhH
Q 048314          220 TNWVYK----CFIN-------------------------RELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCV  270 (274)
Q Consensus       220 ~~~~~~----~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ev  270 (274)
                      ......    ....                         ............+...+..+.+++.+||+.||++|||+.|+
T Consensus       247 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~el  326 (339)
T 1z57_A          247 ERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREA  326 (339)
T ss_dssp             HHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             HHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHH
Confidence            000000    0000                         00000000012344667889999999999999999999999


Q ss_pred             Hh
Q 048314          271 VM  272 (274)
Q Consensus       271 l~  272 (274)
                      ++
T Consensus       327 l~  328 (339)
T 1z57_A          327 LK  328 (339)
T ss_dssp             TT
T ss_pred             hc
Confidence            86

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=4.2e-40  Score=298.78  Aligned_cols=239  Identities=18%  Similarity=0.137  Sum_probs=179.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC----
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS----   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----   86 (274)
                      .++|...+.||.|+|  |.||++.      ..++|.+..    ....+++.+|+.+|+.++||||+++++++...+    
T Consensus        61 ~~~y~~~~~lG~G~~--g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~  138 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQ--GIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEE  138 (464)
T ss_dssp             ETTEEEEEEEEECSS--CEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTT
T ss_pred             cCCeEEEEEeecCCC--eEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCcccc
Confidence            456777899999999  9999882      112222221    122345679999999999999999999996543    


Q ss_pred             --cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           87 --KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        87 --~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                        ..++||||+.+ +|.+.+..    .+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus       139 ~~~~~lv~E~~~~-~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~  210 (464)
T 3ttj_A          139 FQDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL  210 (464)
T ss_dssp             CCEEEEEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCC
T ss_pred             CCeEEEEEeCCCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEe
Confidence              56999999975 57777643    489999999999999999999999   999999999999999999999999999


Q ss_pred             ceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh------
Q 048314          165 AKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI------  228 (274)
Q Consensus       165 ~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~------  228 (274)
                      ++...          ++.|+|||++.+..++.++||||+||++|||++|+.||.....   ...+.. +.....      
T Consensus       211 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~---~~~~~~-i~~~lg~p~~~~  286 (464)
T 3ttj_A          211 ARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY---IDQWNK-VIEQLGTPCPEF  286 (464)
T ss_dssp             C-----CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHH-HHHHHCSCCHHH
T ss_pred             eeecCCCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHHH-HHHhcCCCCHHH
Confidence            86532          6779999999998999999999999999999999999964321   111111 000000      


Q ss_pred             ----hhhhhhhhcCC---------------------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          229 ----NRELNKLVRGT---------------------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       229 ----~~~~~~~~~~~---------------------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                          .......+...                     ......+.++.+|+.+||+.||++|||++|+++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          287 MKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             HTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                00001111100                     0111236789999999999999999999999863

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=1.3e-40  Score=285.10  Aligned_cols=241  Identities=21%  Similarity=0.213  Sum_probs=175.9

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHHH------HHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMRA------LMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~~------~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ..++|.....+|.|++  |.||++...      ++|....   ....+.+.+|+.++++++||||+++++++.+.+..++
T Consensus        13 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   90 (303)
T 2vwi_A           13 NRDDYELQEVIGSGAT--AVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL   90 (303)
T ss_dssp             CCCCCEEEEECC---C--CCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred             chhhhhhhheeccccc--eEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence            3567888999999999  999998321      1221111   1345667899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhC------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           91 EAALDLPWDLAYIIFCS------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      ||||+++++|.+++...      ....+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||.
T Consensus        91 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~  167 (303)
T 2vwi_A           91 VMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGV  167 (303)
T ss_dssp             EEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHH
T ss_pred             EehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccc
Confidence            99999999999999742      245699999999999999999999999   999999999999999999999999998


Q ss_pred             ceec----------------CCCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH
Q 048314          165 AKLL----------------SDKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF  227 (274)
Q Consensus       165 ~~~~----------------~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~  227 (274)
                      +...                +++.|+|||.+.. ..++.++||||||+++|+|++|..||.......   ...    ...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~~----~~~  240 (303)
T 2vwi_A          168 SAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMK---VLM----LTL  240 (303)
T ss_dssp             HHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGG---HHH----HHH
T ss_pred             hheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhh---HHH----HHh
Confidence            7532                3567999998865 468899999999999999999999997542111   110    000


Q ss_pred             hhh--hhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 INR--ELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 ~~~--~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...  ...............+..+.+++.+||+.||.+|||+.|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          241 QNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             TSSCCCTTC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ccCCCccccccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence            000  000001111122344578999999999999999999999986

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=8.7e-40  Score=283.03  Aligned_cols=247  Identities=17%  Similarity=0.187  Sum_probs=189.7

Q ss_pred             hHHHHhhhccccccCCCCCCCCcchhHHHH-------HHHHHhc----CCCCCCcHHHHHHHHhcC---CCCccceEeEE
Q 048314           16 SLCTKLRNFCRSSLNDRNSPRSKSVWSCMR-------ALMATVN----SPYSPSRPLTLTSIVSRV---SWTTDIEVSSV   81 (274)
Q Consensus        16 ~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-------~~~~~~~----~~~~~~~~~~e~~~l~~l---~h~niv~l~~~   81 (274)
                      .+....++|...+.+|.|+|  |.||++..       .++|...    .......+.+|+.+++.+   +||||++++++
T Consensus         5 ~~~~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~   82 (326)
T 1blx_A            5 GLCRADQQYECVAEIGEGAY--GKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDV   82 (326)
T ss_dssp             CCCCGGGTEEEEEEEEEETT--EEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEE
T ss_pred             cccCchhceeeeeeeccccc--EEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeee
Confidence            34556788999999999999  99999832       1222222    112345677888888776   89999999999


Q ss_pred             EE-----eCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 048314           82 AM-----RGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT  156 (274)
Q Consensus        82 ~~-----~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~  156 (274)
                      +.     .....++||||+. |+|.+++.......+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~  158 (326)
T 1blx_A           83 CTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQ  158 (326)
T ss_dssp             EEEEECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCC
T ss_pred             eeecccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCC
Confidence            87     4567899999998 6999999886556799999999999999999999999   9999999999999999999


Q ss_pred             EEEeccccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH
Q 048314          157 AKISDFGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC  226 (274)
Q Consensus       157 ~kl~d~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~  226 (274)
                      ++|+|||.+....          +..|+|||.+....++.++||||||+++|+|++|..||....   ....+.. +...
T Consensus       159 ~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---~~~~~~~-i~~~  234 (326)
T 1blx_A          159 IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSS---DVDQLGK-ILDV  234 (326)
T ss_dssp             EEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS---HHHHHHH-HHHH
T ss_pred             EEEecCcccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCC---HHHHHHH-HHHH
Confidence            9999999986533          667999999998889999999999999999999999997431   1111111 1111


Q ss_pred             Hhh---hhhhh-------hhcCC------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          227 FIN---RELNK-------LVRGT------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       227 ~~~---~~~~~-------~~~~~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...   .....       .....      ......+..+.+++.+||+.||++|||+.|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          235 IGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             HCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            000   00000       00000      122345678899999999999999999999985

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=3e-41  Score=293.57  Aligned_cols=249  Identities=18%  Similarity=0.184  Sum_probs=178.6

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH----HHHHHhcCCCCCCcHHHHHHH--HhcCCCCccceEeEEEEe-----CCcc
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR----ALMATVNSPYSPSRPLTLTSI--VSRVSWTTDIEVSSVAMR-----GSKP   88 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~----~~~~~~~~~~~~~~~~~e~~~--l~~l~h~niv~l~~~~~~-----~~~~   88 (274)
                      ..++|.....+|.|+|  |.||+|..    .++|.+.. .....+..|.++  +..++||||+++++.+..     ....
T Consensus        11 ~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~vavK~~~~-~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~   87 (336)
T 3g2f_A           11 DLDNLKLLELIGRGRY--GAVYKGSLDERPVAVKVFSF-ANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY   87 (336)
T ss_dssp             CTTSEEEEEEEEECSS--EEEEEEEETTEEEEEEEEEG-GGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             ChHHhheeeecccCCC--eEEEEEEECCeEEEEEEeec-cchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence            3467888999999999  99999821    11121111 122334445444  445899999999986643     2356


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC------CCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC------EPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~------~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                      ++||||+++|+|.+++..   ...++..++.++.|++.||.|||+.+      ..+++||||||+||+++.++.+||+||
T Consensus        88 ~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DF  164 (336)
T 3g2f_A           88 LLVMEYYPNGSLXKYLSL---HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDF  164 (336)
T ss_dssp             EEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCC
T ss_pred             EEEEecCCCCcHHHHHhh---cccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeec
Confidence            899999999999999976   34599999999999999999999863      238999999999999999999999999


Q ss_pred             ccceec-------------------CCCCcCCCccccc-------CCCccccceeehhHhHHHHhhcCCCccccCCChhh
Q 048314          163 GLAKLL-------------------SDKGCMAPECYKR-------TPISVKADVYGYGIVLLETICCWENMEIDASKPEE  216 (274)
Q Consensus       163 g~~~~~-------------------~~~~~~ape~~~~-------~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~  216 (274)
                      |++...                   ++..|+|||++.+       ..++.++||||||+++|||++|..||.........
T Consensus       165 G~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~  244 (336)
T 3g2f_A          165 GLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEY  244 (336)
T ss_dssp             TTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCC
T ss_pred             cceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHH
Confidence            999643                   3567999999876       34667899999999999999998877543221110


Q ss_pred             H-HHH---------HHHHHHHhhhhhhhhh-cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          217 I-ILT---------NWVYKCFINRELNKLV-RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       217 ~-~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      . ...         ...............+ .........+..+.+++.+||+.||++|||+.|+++.|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L  313 (336)
T 3g2f_A          245 QMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERM  313 (336)
T ss_dssp             CCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             HHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHH
Confidence            0 000         0000000000000000 00022345677899999999999999999999998864

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=2.2e-40  Score=291.18  Aligned_cols=251  Identities=16%  Similarity=0.099  Sum_probs=188.9

Q ss_pred             hhhhhhHHHHhhhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCC------------CCcHHHHHHHHhcCCC
Q 048314           11 WIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYS------------PSRPLTLTSIVSRVSW   72 (274)
Q Consensus        11 ~~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~------------~~~~~~e~~~l~~l~h   72 (274)
                      .....++....++|...+.+|.|+|  |.||++.      +++|........            .+.+.+|+.++++++|
T Consensus        11 ~~~~~~~~~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   88 (362)
T 3pg1_A           11 RDLIAELHAMQSPYTVQRFISSGSY--GAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHH   88 (362)
T ss_dssp             HHHHHHHHHTTCSCEEEEEEEEETT--EEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhccceEEeEEeccCCC--EEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCC
Confidence            3566788888999999999999999  9999982      122211111111            1457899999999999


Q ss_pred             CccceEeEEEEeC-----CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC
Q 048314           73 TTDIEVSSVAMRG-----SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQ  147 (274)
Q Consensus        73 ~niv~l~~~~~~~-----~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~  147 (274)
                      |||+++++++...     ...++||||+. |+|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+
T Consensus        89 ~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~  163 (362)
T 3pg1_A           89 PNILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHD-QRIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPG  163 (362)
T ss_dssp             TTBCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGG
T ss_pred             cCccceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChH
Confidence            9999999998543     35799999998 689999875 445799999999999999999999999   9999999999


Q ss_pred             ceEEcCCCcEEEeccccceecC----------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhh
Q 048314          148 NILMDEFWTAKISDFGLAKLLS----------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEE  216 (274)
Q Consensus       148 nil~~~~~~~kl~d~g~~~~~~----------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~  216 (274)
                      ||+++.++.++|+|||++....          ++.|+|||.+.. ..++.++||||||+++|+|++|+.||....   ..
T Consensus       164 NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~---~~  240 (362)
T 3pg1_A          164 NILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGST---FY  240 (362)
T ss_dssp             GEEECTTCCEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS---HH
T ss_pred             HEEEcCCCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCC---HH
Confidence            9999999999999999986432          567999998876 678999999999999999999999997431   11


Q ss_pred             HHHHHHHHHHHh-----------hhhhhhhhcCC----------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          217 IILTNWVYKCFI-----------NRELNKLVRGT----------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       217 ~~~~~~~~~~~~-----------~~~~~~~~~~~----------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+.. ......           .......+...          ..+...++.+.+++.+||+.||++|||+.|+++
T Consensus       241 ~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  316 (362)
T 3pg1_A          241 NQLNK-IVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR  316 (362)
T ss_dssp             HHHHH-HHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHH-HHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence            11111 111000           00000111000          112234567999999999999999999999986

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.1e-40  Score=289.87  Aligned_cols=239  Identities=16%  Similarity=0.147  Sum_probs=177.5

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCC----CCCcHHHHHHHHhcCCCCccceEeEEEEeCC----
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPY----SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS----   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----   86 (274)
                      .++|...+.+|.|+|  |.||++..      .++|.+....    ..+++.+|+.++++++||||+++++++...+    
T Consensus        24 ~~~y~~~~~lG~G~~--g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~  101 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAY--GAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDD  101 (367)
T ss_dssp             BSSEEEEEEC--------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTT
T ss_pred             cceEEEeEEeeecCC--eEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCcccc
Confidence            467888899999999  99999821      1222222111    1244678999999999999999999997653    


Q ss_pred             --cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           87 --KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        87 --~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                        ..++||||+ +++|.+++..   ..+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+
T Consensus       102 ~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~  174 (367)
T 1cm8_A          102 FTDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGL  174 (367)
T ss_dssp             CCCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             CceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeec
Confidence              459999999 7899999976   4699999999999999999999999   999999999999999999999999999


Q ss_pred             ceecC--------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH--------
Q 048314          165 AKLLS--------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF--------  227 (274)
Q Consensus       165 ~~~~~--------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~--------  227 (274)
                      ++...        +..|+|||.+.. ..++.++||||+||++++|++|+.||.....   ...+.. .....        
T Consensus       175 a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~~~l~~-i~~~~g~~~~~~~  250 (367)
T 1cm8_A          175 ARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDH---LDQLKE-IMKVTGTPPAEFV  250 (367)
T ss_dssp             CEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHH-HHHHHCCCCHHHH
T ss_pred             ccccccccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHH-HHHhcCCCCHHHH
Confidence            87543        567999999876 6789999999999999999999999974311   111111 10000        


Q ss_pred             ---hhhhhhhhhc------CC---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 ---INRELNKLVR------GT---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 ---~~~~~~~~~~------~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         ........+.      ..   ......+..+.+++.+||+.||++|||+.|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~  307 (367)
T 1cm8_A          251 QRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA  307 (367)
T ss_dssp             HTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence               0000000000      00   122344678999999999999999999999986

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=3.2e-40  Score=290.75  Aligned_cols=234  Identities=15%  Similarity=0.084  Sum_probs=185.1

Q ss_pred             hhhHHHHhhhccccccCCCCCCCCcchhHHH-----HHH------HHHhcCCCCCCcHHHHHHHHhcCC---CCccceEe
Q 048314           14 RSSLCTKLRNFCRSSLNDRNSPRSKSVWSCM-----RAL------MATVNSPYSPSRPLTLTSIVSRVS---WTTDIEVS   79 (274)
Q Consensus        14 ~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~-----~~~------~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~   79 (274)
                      ..++....++|.....+|.|+|  |.||+|.     ...      +|.. ......++..|+.++.+++   |+||++++
T Consensus        57 ~~~~~~~~~~y~~~~~lG~G~~--g~Vy~~~~~~~~~~~~~~~vavK~~-~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~  133 (365)
T 3e7e_A           57 KTEFQLGSKLVYVHHLLGEGAF--AQVYEATQGDLNDAKNKQKFVLKVQ-KPANPWEFYIGTQLMERLKPSMQHMFMKFY  133 (365)
T ss_dssp             SCEEECSSSEEEEEEEEEECSS--EEEEEEEC-------CCCCEEEEEE-SSCCHHHHHHHHHHHHHSCGGGGGGBCCEE
T ss_pred             ceeEEECCEEEEEEEEeeccCC--EEEEEEEecCCcccccCcEEEEEEe-CCCChhHHHHHHHHHHHhhhhhhhhhhhhh
Confidence            3444455677888889999999  9999992     111      1111 1234456778888888887   89999999


Q ss_pred             EEEEeCCcceEEEEeCCCCCHHHHHHhC---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---
Q 048314           80 SVAMRGSKPSTEAALDLPWDLAYIIFCS---AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---  153 (274)
Q Consensus        80 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~---~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---  153 (274)
                      +++.+.+..++|||||++|+|.+++...   ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.   
T Consensus       134 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~  210 (365)
T 3e7e_A          134 SAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFL  210 (365)
T ss_dssp             EEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGT
T ss_pred             eeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEeccccc
Confidence            9999999999999999999999999743   245699999999999999999999999   9999999999999988   


Q ss_pred             --------CCcEEEeccccceec-------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCC
Q 048314          154 --------FWTAKISDFGLAKLL-------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDAS  212 (274)
Q Consensus       154 --------~~~~kl~d~g~~~~~-------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~  212 (274)
                              ++.+||+|||++...             +++.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus       211 ~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~  290 (365)
T 3e7e_A          211 EQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEG  290 (365)
T ss_dssp             CC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEET
T ss_pred             CccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCC
Confidence                    899999999999543             27789999999998899999999999999999999999964321


Q ss_pred             ChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCC-ChhhHHh
Q 048314          213 KPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRP-SMKCVVM  272 (274)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-s~~evl~  272 (274)
                      ...               ........  .  ...+.+.+++..|++.+|.+|+ ++.++.+
T Consensus       291 ~~~---------------~~~~~~~~--~--~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~  332 (365)
T 3e7e_A          291 GEC---------------KPEGLFRR--L--PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQ  332 (365)
T ss_dssp             TEE---------------EECSCCTT--C--SSHHHHHHHHHHHHCCCCTTCCCCHHHHHH
T ss_pred             Cce---------------eechhccc--c--CcHHHHHHHHHHHcCCCCCCcchHHHHHHH
Confidence            110               01111111  1  2256778899999999999995 5666554

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=3.4e-39  Score=279.33  Aligned_cols=234  Identities=15%  Similarity=0.145  Sum_probs=180.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhc----------CCCCCCcHHHHHHHHhcCCCCccceEeEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN----------SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR   84 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~----------~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~   84 (274)
                      .++|.....+|.|+|  |.||++..      .++|.+.          .......+.+|+.++++++||||+++++++..
T Consensus         9 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   86 (322)
T 2ycf_A            9 RDEYIMSKTLGSGAC--GEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA   86 (322)
T ss_dssp             HHHEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES
T ss_pred             hhceeEeeEEecCCC--EEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC
Confidence            567888999999999  99999821      1122211          11234568899999999999999999999876


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc---EEEec
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT---AKISD  161 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~---~kl~d  161 (274)
                      .. .++||||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.   +||+|
T Consensus        87 ~~-~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~D  160 (322)
T 2ycf_A           87 ED-YYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITD  160 (322)
T ss_dssp             SS-EEEEEECCTTEETHHHHST--TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECC
T ss_pred             Cc-eEEEEecCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEcc
Confidence            55 8999999999999999975  46799999999999999999999999   9999999999999986554   99999


Q ss_pred             cccceecC----------CCCcCCCcccc---cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh
Q 048314          162 FGLAKLLS----------DKGCMAPECYK---RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI  228 (274)
Q Consensus       162 ~g~~~~~~----------~~~~~ape~~~---~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~  228 (274)
                      ||++....          ++.|+|||.+.   ...++.++||||||+++|+|++|..||.........   ...    ..
T Consensus       161 fg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~---~~~----~~  233 (322)
T 2ycf_A          161 FGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSL---KDQ----IT  233 (322)
T ss_dssp             CTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCH---HHH----HH
T ss_pred             CccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHH---HHH----HH
Confidence            99987643          67899999874   456889999999999999999999999754222111   110    01


Q ss_pred             hhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          229 NRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+....   ........+..+.+++.+||+.||++|||+.++++
T Consensus       234 ~~~~~~---~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          234 SGKYNF---IPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             HTCCCC---CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hCcccc---CchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            110000   00011234578899999999999999999999986

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=4.9e-40  Score=287.19  Aligned_cols=240  Identities=15%  Similarity=0.134  Sum_probs=186.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----HHHH----HhcCCCCC--------------CcHHHHHHHHhcCCCCccce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----ALMA----TVNSPYSP--------------SRPLTLTSIVSRVSWTTDIE   77 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~----~~~~~~~~--------------~~~~~e~~~l~~l~h~niv~   77 (274)
                      .++|.....+|.|+|  |.||++..     ++|.    ........              +.+.+|+.++++++||||++
T Consensus        30 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~  107 (348)
T 2pml_X           30 INDYRIIRTLNQGKF--NKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLT  107 (348)
T ss_dssp             ETTEEEEEEEECCSS--CCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             cCceEEEEEEcCCCC--eEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcce
Confidence            467888999999999  99998821     1111    11111001              66889999999999999999


Q ss_pred             EeEEEEeCCcceEEEEeCCCCCHHHH------HHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceE
Q 048314           78 VSSVAMRGSKPSTEAALDLPWDLAYI------IFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNIL  150 (274)
Q Consensus        78 l~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil  150 (274)
                      +++++.+.+..++||||+++|+|.++      +.......+++..++.++.|++.||.|||+ .   +++|+||+|+||+
T Consensus       108 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil  184 (348)
T 2pml_X          108 CEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNIL  184 (348)
T ss_dssp             CSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEE
T ss_pred             EEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEE
Confidence            99999999999999999999999999      655335779999999999999999999999 8   9999999999999


Q ss_pred             EcCCCcEEEeccccceec---------CCCCcCCCcccccC-CCcc-ccceeehhHhHHHHhhcCCCccccCCChhhHHH
Q 048314          151 MDEFWTAKISDFGLAKLL---------SDKGCMAPECYKRT-PISV-KADVYGYGIVLLETICCWENMEIDASKPEEIIL  219 (274)
Q Consensus       151 ~~~~~~~kl~d~g~~~~~---------~~~~~~ape~~~~~-~~~~-~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~  219 (274)
                      ++.++.++|+|||.+...         ++..|+|||.+... .++. ++||||||+++|+|++|..||........   +
T Consensus       185 ~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---~  261 (348)
T 2pml_X          185 MDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVE---L  261 (348)
T ss_dssp             ECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHH---H
T ss_pred             EcCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHH---H
Confidence            999999999999998763         25679999999877 5665 99999999999999999999975422111   1


Q ss_pred             HHHHHHHHhhhhhhhhhc------CC------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          220 TNWVYKCFINRELNKLVR------GT------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .    .............      +.      ......+..+.+++.+||+.||.+|||+.|+++
T Consensus       262 ~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          262 F----NNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             H----HHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             H----HHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            1    1111110000000      00      011345678999999999999999999999986

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=2e-41  Score=299.81  Aligned_cols=227  Identities=12%  Similarity=0.074  Sum_probs=174.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcC-----CCCCCcHHHHH---HHHhcCCCCccceEe-------
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNS-----PYSPSRPLTLT---SIVSRVSWTTDIEVS-------   79 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~-----~~~~~~~~~e~---~~l~~l~h~niv~l~-------   79 (274)
                      .++|...+.||.|+|  |.||+|..      .++|.+..     ....+.+.+|+   +.+++++|||||+++       
T Consensus        72 ~~~y~~~~~lG~G~~--g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~  149 (377)
T 3byv_A           72 PRTLVRGTVLGQEDP--YAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF  149 (377)
T ss_dssp             CEEEEEEEEEEEETT--EEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCS
T ss_pred             CceEEEcceeecCCC--EEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhh
Confidence            456777899999999  99999831      22333221     12235567999   556666899999998       


Q ss_pred             EEEEeCC-----------------cceEEEEeCCCCCHHHHHHhCC-----CCCCCHHHHHHHHHHHHHHHHHHhcCCCC
Q 048314           80 SVAMRGS-----------------KPSTEAALDLPWDLAYIIFCSA-----ERNPYWNQRVRIALDVAKGILYLHDECEP  137 (274)
Q Consensus        80 ~~~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~  137 (274)
                      +++.+.+                 ..++||||+ +|+|.+++....     ...+++..++.++.|++.||.|||+.   
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---  225 (377)
T 3byv_A          150 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---  225 (377)
T ss_dssp             EEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             hhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---
Confidence            6666553                 378999999 689999998531     11244688899999999999999999   


Q ss_pred             CcccCCCCCCceEEcCCCcEEEeccccceecC-------CCCcCCCcccccC-----------CCccccceeehhHhHHH
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKLLS-------DKGCMAPECYKRT-----------PISVKADVYGYGIVLLE  199 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-------~~~~~ape~~~~~-----------~~~~~~Di~s~G~~l~e  199 (274)
                      +|+||||||+||+++.++.+||+|||+++...       .+.|+|||++...           .++.++|||||||++||
T Consensus       226 ~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~e  305 (377)
T 3byv_A          226 GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYW  305 (377)
T ss_dssp             TEECSCCCGGGEEECTTCCEEECCGGGCEETTCEEECCCCTTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHH
T ss_pred             CeecCCCCHHHEEEcCCCCEEEEechhheecCCcccCCCCcCccChhhhcccccccccccccccCChhhhHHHHHHHHHH
Confidence            99999999999999999999999999987543       2789999999877           78999999999999999


Q ss_pred             HhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          200 TICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       200 l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      |++|+.||......                .....+..   .....+..+.+++.+||+.||++|||+.|+++
T Consensus       306 lltg~~Pf~~~~~~----------------~~~~~~~~---~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  359 (377)
T 3byv_A          306 IWCADLPITKDAAL----------------GGSEWIFR---SCKNIPQPVRALLEGFLRYPKEDRLLPLQAME  359 (377)
T ss_dssp             HHHSSCCC----------------------CCSGGGGS---SCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred             HHHCCCCCcccccc----------------cchhhhhh---hccCCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence            99999999643110                01111111   11234577899999999999999999999986

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.8e-39  Score=286.10  Aligned_cols=235  Identities=17%  Similarity=0.192  Sum_probs=184.1

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCC----------CCcHHHHHHHHhcC-CCCccceEeEEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYS----------PSRPLTLTSIVSRV-SWTTDIEVSSVA   82 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~----------~~~~~~e~~~l~~l-~h~niv~l~~~~   82 (274)
                      ..++|.....||.|++  |.||++..      .++|.......          .+.+.+|+.+++++ +||||+++++++
T Consensus        92 ~~~~y~~~~~lg~G~~--g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  169 (365)
T 2y7j_A           92 FYQKYDPKDVIGRGVS--SVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY  169 (365)
T ss_dssp             HHHHEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhhhcccceEEecCCC--EEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            3467888899999999  99999821      22232222111          23467899999999 799999999999


Q ss_pred             EeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           83 MRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        83 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                      ...+..++||||+++++|.+++..  ...+++..+..++.|++.||.|||+.   +++|+||||+||+++.++.++|+||
T Consensus       170 ~~~~~~~lv~e~~~g~~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ikl~Df  244 (365)
T 2y7j_A          170 ESSSFMFLVFDLMRKGELFDYLTE--KVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSDF  244 (365)
T ss_dssp             EBSSEEEEEECCCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred             eeCCEEEEEEEeCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEec
Confidence            999999999999999999999985  35699999999999999999999999   9999999999999999999999999


Q ss_pred             ccceec----------CCCCcCCCccccc------CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH
Q 048314          163 GLAKLL----------SDKGCMAPECYKR------TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC  226 (274)
Q Consensus       163 g~~~~~----------~~~~~~ape~~~~------~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~  226 (274)
                      |++...          +++.|+|||++..      ..++.++||||||+++|+|++|..||....   . .....    .
T Consensus       245 G~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~---~-~~~~~----~  316 (365)
T 2y7j_A          245 GFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR---Q-ILMLR----M  316 (365)
T ss_dssp             TTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSS---H-HHHHH----H
T ss_pred             CcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCC---H-HHHHH----H
Confidence            988653          2667999998863      357889999999999999999999996431   1 11111    1


Q ss_pred             HhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          227 FINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+...   ...+.....+..+.+++.+||+.||++|||+.|+++
T Consensus       317 i~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          317 IMEGQYQ---FSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             HHHTCCC---CCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHhCCCC---CCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            1111000   000001123467899999999999999999999986

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=1.2e-39  Score=287.77  Aligned_cols=239  Identities=18%  Similarity=0.128  Sum_probs=179.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC----
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS----   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----   86 (274)
                      .++|...+.+|.|+|  |.||++..      .++|.+...    ...+.+.+|+.+++.++||||+++++++...+    
T Consensus        24 ~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~  101 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQ--GIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE  101 (371)
T ss_dssp             ETTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTT
T ss_pred             hhheeEeeeeEecCC--EEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccc
Confidence            467888999999999  99999821      122222221    11234678999999999999999999997654    


Q ss_pred             --cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           87 --KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        87 --~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                        ..++||||+. |+|.+++..    .+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+
T Consensus       102 ~~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~  173 (371)
T 2xrw_A          102 FQDVYIVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL  173 (371)
T ss_dssp             CCEEEEEEECCS-EEHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC
T ss_pred             ccceEEEEEcCC-CCHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeec
Confidence              6799999997 578888863    589999999999999999999999   999999999999999999999999999


Q ss_pred             ceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH----------
Q 048314          165 AKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY----------  224 (274)
Q Consensus       165 ~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~----------  224 (274)
                      +....          ++.|+|||.+....++.++|||||||++|+|++|..||.....   ...+.....          
T Consensus       174 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~  250 (371)
T 2xrw_A          174 ARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH---IDQWNKVIEQLGTPCPEFM  250 (371)
T ss_dssp             ----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHC-CCCCCHHHH
T ss_pred             ccccccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHHHhCCCCHHHH
Confidence            86532          5679999999988899999999999999999999999964311   110000000          


Q ss_pred             --------HHHhhh----------hhhhhhcCC--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          225 --------KCFINR----------ELNKLVRGT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       225 --------~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                              ....+.          .......+.  +.+...+..+.+|+.+||+.||++|||++|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  318 (371)
T 2xrw_A          251 KKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  318 (371)
T ss_dssp             TTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence                    000000          000000000  112234678999999999999999999999986

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=6.5e-40  Score=280.34  Aligned_cols=235  Identities=19%  Similarity=0.243  Sum_probs=180.9

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEe--------
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--------   84 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--------   84 (274)
                      ..++|...+.+|.|+|  |.||++..      .++|... .....+.+.+|+.++++++||||+++++++.+        
T Consensus         4 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   81 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAF--GQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPM   81 (303)
T ss_dssp             HHHHEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC--
T ss_pred             ccccchhhheeccCCc--EEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhh
Confidence            3568888999999999  99999831      1122111 11223457799999999999999999999865        


Q ss_pred             -----CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 048314           85 -----GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI  159 (274)
Q Consensus        85 -----~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl  159 (274)
                           .+..++||||+++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.++|
T Consensus        82 ~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl  157 (303)
T 1zy4_A           82 TAVKKKSTLFIQMEYCENGTLYDLIHS-ENLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKI  157 (303)
T ss_dssp             ----CEEEEEEEEECCCSCBHHHHHHH-SCGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEE
T ss_pred             cccccCCceEEEEecCCCCCHHHhhhc-cccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEE
Confidence                 3467999999999999999986 345688999999999999999999999   9999999999999999999999


Q ss_pred             eccccceec-------------------------CCCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCC
Q 048314          160 SDFGLAKLL-------------------------SDKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASK  213 (274)
Q Consensus       160 ~d~g~~~~~-------------------------~~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~  213 (274)
                      +|||.+...                         +++.|+|||.+... .++.++||||||+++|+|++   ||...   
T Consensus       158 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~---  231 (303)
T 1zy4_A          158 GDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTG---  231 (303)
T ss_dssp             CCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSH---
T ss_pred             eeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCc---
Confidence            999988643                         25679999998754 68899999999999999997   44321   


Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          214 PEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      .......    .....   .....+...+...+..+.+++.+||+.||.+|||+.++++.
T Consensus       232 ~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  284 (303)
T 1zy4_A          232 MERVNIL----KKLRS---VSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS  284 (303)
T ss_dssp             HHHHHHH----HHHHS---TTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             hhHHHHH----Hhccc---cccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence            1111110    00110   01111123445566788999999999999999999999873

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.2e-41  Score=290.60  Aligned_cols=234  Identities=17%  Similarity=0.135  Sum_probs=170.4

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCC-CCccceEeEEEEe----
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVS-WTTDIEVSSVAMR----   84 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~----   84 (274)
                      .....+|.....+|.|+|  |.||++..      .++|.+...  ...+.+.+|+.++.++. ||||+++++++..    
T Consensus        24 ~~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~  101 (337)
T 3ll6_A           24 ELGELRLRVRRVLAEGGF--AFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEE  101 (337)
T ss_dssp             EETTEEEEEEEEEECCSS--EEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTT
T ss_pred             eccCceEEEEEEEccCCc--eEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccc
Confidence            334457888999999999  99999831      122222111  22345679999999996 9999999999842    


Q ss_pred             ----CCcceEEEEeCCCCCHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--cccCCCCCCceEEcCCCcE
Q 048314           85 ----GSKPSTEAALDLPWDLAYIIFCS-AERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDEFWTA  157 (274)
Q Consensus        85 ----~~~~~lv~e~~~~gsL~~~l~~~-~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~~~~~~  157 (274)
                          ....+++|||+. |+|.+++... ....+++..++.++.|++.||.|||+.   +  ++|+||||+||+++.++.+
T Consensus       102 ~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~  177 (337)
T 3ll6_A          102 SDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTI  177 (337)
T ss_dssp             STTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCE
T ss_pred             cccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCE
Confidence                345799999996 7999998753 345699999999999999999999998   8  9999999999999999999


Q ss_pred             EEeccccceec-----------------------CCCCcCCCccc---ccCCCccccceeehhHhHHHHhhcCCCccccC
Q 048314          158 KISDFGLAKLL-----------------------SDKGCMAPECY---KRTPISVKADVYGYGIVLLETICCWENMEIDA  211 (274)
Q Consensus       158 kl~d~g~~~~~-----------------------~~~~~~ape~~---~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~  211 (274)
                      ||+|||++...                       +++.|+|||.+   ....++.++||||||+++|+|++|..||....
T Consensus       178 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~  257 (337)
T 3ll6_A          178 KLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGA  257 (337)
T ss_dssp             EBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             EEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchh
Confidence            99999998653                       35679999998   45678899999999999999999999996331


Q ss_pred             CChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          212 SKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...            ......     ....+...+..+.+++.+||+.||++|||+.|+++.|
T Consensus       258 ~~~------------~~~~~~-----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l  303 (337)
T 3ll6_A          258 KLR------------IVNGKY-----SIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQL  303 (337)
T ss_dssp             --------------------C-----CCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             HHH------------hhcCcc-----cCCcccccchHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            100            000000     0012223335688999999999999999999999864

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=289.22  Aligned_cols=245  Identities=16%  Similarity=0.134  Sum_probs=171.5

Q ss_pred             hhccc-cccCCCCCCCCcchhHHHH--------HHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEe--CCcceE
Q 048314           22 RNFCR-SSLNDRNSPRSKSVWSCMR--------ALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--GSKPST   90 (274)
Q Consensus        22 ~~f~~-~~~~g~g~~~~g~vy~~~~--------~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~l   90 (274)
                      +.|.. ...||.|+|  |.||+|..        .++|.+......+.+.+|+.+|++++||||+++++++.+  ....++
T Consensus        20 ~~y~~~g~~lG~G~~--g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l   97 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTY--GHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWL   97 (405)
T ss_dssp             HHEECSSCCCC-------EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred             hhhhhcCcEeeecCC--eEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence            34444 558999999  99999831        223333333345568899999999999999999999965  667899


Q ss_pred             EEEeCCCCCHHHHHHhC-------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE----cCCCcEEE
Q 048314           91 EAALDLPWDLAYIIFCS-------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKI  159 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~----~~~~~~kl  159 (274)
                      ||||+. |+|.+++...       ....+++..++.++.|++.||.|||+.   +|+||||||+||++    +.++.+||
T Consensus        98 v~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl  173 (405)
T 3rgf_A           98 LFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKI  173 (405)
T ss_dssp             EEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred             EEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEE
Confidence            999987 5888888632       122499999999999999999999999   99999999999999    67789999


Q ss_pred             eccccceecC--------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCCh-----hhHHH
Q 048314          160 SDFGLAKLLS--------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKP-----EEIIL  219 (274)
Q Consensus       160 ~d~g~~~~~~--------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~-----~~~~~  219 (274)
                      +|||++....              ++.|+|||++... .++.++|||||||++|+|++|..||.......     .....
T Consensus       174 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~  253 (405)
T 3rgf_A          174 ADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQ  253 (405)
T ss_dssp             CCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHH
T ss_pred             EECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHH
Confidence            9999986432              6679999998874 58999999999999999999999996432210     00011


Q ss_pred             HHHHHHHHhhh---hhhh-----------------hhcCC-------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          220 TNWVYKCFINR---ELNK-----------------LVRGT-------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       220 ~~~~~~~~~~~---~~~~-----------------~~~~~-------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+...+...   ....                 .....       ......+..+.+|+.+||+.||++|||++|+++
T Consensus       254 l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~  333 (405)
T 3rgf_A          254 LDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ  333 (405)
T ss_dssp             HHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            11110100000   0000                 00000       000011457889999999999999999999986

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=1.4e-39  Score=284.47  Aligned_cols=242  Identities=14%  Similarity=0.125  Sum_probs=185.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-------HHHHHhcCC-CCCCcHHHHHHHHhcCCCCc------cceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-------ALMATVNSP-YSPSRPLTLTSIVSRVSWTT------DIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-------~~~~~~~~~-~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~~   86 (274)
                      .++|...+.+|.|+|  |.||++..       .++|..... ...+.+.+|+.++++++|+|      ++.+++++...+
T Consensus        18 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~   95 (355)
T 2eu9_A           18 QERYEIVGNLGEGTF--GKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG   95 (355)
T ss_dssp             TTTEEEEEEEEEETT--EEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT
T ss_pred             cccEEEEEEeeccCC--eEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC
Confidence            467888999999999  99998821       122222221 22345678999999998766      899999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---------------
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---------------  151 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---------------  151 (274)
                      ..++||||+ +++|.+++.......+++..++.++.|++.||.|||+.   +++||||||+||++               
T Consensus        96 ~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~~  171 (355)
T 2eu9_A           96 HMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKSC  171 (355)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-CC
T ss_pred             eEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccccccccccc
Confidence            999999999 67788888775556799999999999999999999999   99999999999999               


Q ss_pred             ----cCCCcEEEeccccceec--------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHH
Q 048314          152 ----DEFWTAKISDFGLAKLL--------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL  219 (274)
Q Consensus       152 ----~~~~~~kl~d~g~~~~~--------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~  219 (274)
                          +.++.+||+|||++...        +++.|+|||++....++.++||||||+++|+|++|..||.......   .+
T Consensus       172 ~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~---~~  248 (355)
T 2eu9_A          172 EEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENRE---HL  248 (355)
T ss_dssp             CEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HH
T ss_pred             cccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH---HH
Confidence                56789999999998753        3677999999998899999999999999999999999997542111   11


Q ss_pred             HHHHHHHHhh---------------------------------hhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCC
Q 048314          220 TNWVYKCFIN---------------------------------RELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPS  266 (274)
Q Consensus       220 ~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps  266 (274)
                       ..+......                                 ............+...+..+.+++.+||+.||++|||
T Consensus       249 -~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt  327 (355)
T 2eu9_A          249 -VMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRIT  327 (355)
T ss_dssp             -HHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCC
T ss_pred             -HHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcC
Confidence             111110000                                 0000000000123455678999999999999999999


Q ss_pred             hhhHHh
Q 048314          267 MKCVVM  272 (274)
Q Consensus       267 ~~evl~  272 (274)
                      ++|+++
T Consensus       328 ~~e~l~  333 (355)
T 2eu9_A          328 LAEALL  333 (355)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            999985

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=1.7e-39  Score=277.86  Aligned_cols=235  Identities=16%  Similarity=0.174  Sum_probs=186.0

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCC-----------CCCcHHHHHHHHhcCC-CCccceEeEE
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPY-----------SPSRPLTLTSIVSRVS-WTTDIEVSSV   81 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~-----------~~~~~~~e~~~l~~l~-h~niv~l~~~   81 (274)
                      ..++|.....+|.|++  |.||++..      .++|......           ..+.+.+|+.+++++. ||||++++++
T Consensus        15 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~   92 (298)
T 1phk_A           15 FYENYEPKEILGRGVS--SVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDT   92 (298)
T ss_dssp             CTTTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred             hhhccceeeeecCCCc--eEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeee
Confidence            3578888999999999  99999821      1222222111           1234678999999996 9999999999


Q ss_pred             EEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 048314           82 AMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISD  161 (274)
Q Consensus        82 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  161 (274)
                      +.+.+..++||||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|
T Consensus        93 ~~~~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~d  167 (298)
T 1phk_A           93 YETNTFFFLVFDLMKKGELFDYLTE--KVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTD  167 (298)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECC
T ss_pred             eccCCeEEEEEeccCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEec
Confidence            9999999999999999999999986  35799999999999999999999999   999999999999999999999999


Q ss_pred             cccceec----------CCCCcCCCcccc------cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH
Q 048314          162 FGLAKLL----------SDKGCMAPECYK------RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK  225 (274)
Q Consensus       162 ~g~~~~~----------~~~~~~ape~~~------~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~  225 (274)
                      ||.+...          +++.|+|||.+.      ...++.++||||||+++|+|++|..||....   .. ...    .
T Consensus       168 fg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~---~~-~~~----~  239 (298)
T 1phk_A          168 FGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK---QM-LML----R  239 (298)
T ss_dssp             CTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS---HH-HHH----H
T ss_pred             ccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCcc---HH-HHH----H
Confidence            9998653          256799999885      3467889999999999999999999996431   11 111    1


Q ss_pred             HHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          226 CFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .......   ..+.+.....+..+.+++.+||+.||++|||+.|+++
T Consensus       240 ~~~~~~~---~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          240 MIMSGNY---QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             HHHHTCC---CCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             HHhcCCc---ccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence            1111110   0011122345678999999999999999999999985

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=1.2e-39  Score=290.03  Aligned_cols=240  Identities=15%  Similarity=0.090  Sum_probs=177.3

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc------ce
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK------PS   89 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~------~~   89 (274)
                      .+|...+.||.|+|  |.||++.      +++++...   ..+...+|+.+++.++||||+++++++...+.      .+
T Consensus        40 ~~Y~~~~~lG~G~~--g~V~~a~~~~~~~~aikk~~~---~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~  114 (394)
T 4e7w_A           40 IAYTNCKVIGNGSF--GVVFQAKLVESDEVAIKKVLQ---DKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN  114 (394)
T ss_dssp             EEEEEEEEEEEETT--EEEEEEEETTTEEEEEEEEEC---CTTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred             ceEEEeEEEeeCCC--eEEEEEEECCCCeEEEEEEec---CcchHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence            46778899999999  9999882      22222222   23334589999999999999999999965433      78


Q ss_pred             EEEEeCCCCCHHHHHHh-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CCCcEEEecccccee
Q 048314           90 TEAALDLPWDLAYIIFC-SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKISDFGLAKL  167 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~-~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-~~~~~kl~d~g~~~~  167 (274)
                      +||||++++.+...... .....+++..++.++.|++.||.|||+.   +++||||||+||+++ .++.+||+|||+++.
T Consensus       115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~  191 (394)
T 4e7w_A          115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKI  191 (394)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCccc
Confidence            99999987544333321 1346799999999999999999999999   999999999999998 789999999999975


Q ss_pred             cC----------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH------hhh
Q 048314          168 LS----------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF------INR  230 (274)
Q Consensus       168 ~~----------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~------~~~  230 (274)
                      ..          ++.|+|||.+.+. .++.++||||+||++|||++|..||.....   ...+.......-      ...
T Consensus       192 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~---~~~l~~i~~~~g~p~~~~~~~  268 (394)
T 4e7w_A          192 LIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESG---IDQLVEIIKVLGTPSREQIKT  268 (394)
T ss_dssp             CCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHHHCCCCHHHHHH
T ss_pred             ccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHHHhCCCCHHHHHh
Confidence            42          5669999988764 589999999999999999999999975421   111111111000      000


Q ss_pred             hhhhhhc-------CC----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          231 ELNKLVR-------GT----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       231 ~~~~~~~-------~~----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...+...       +.    ..+...+.++.+|+.+||+.||++|||+.|+++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          269 MNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             HCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             hChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence            0000000       00    122235678999999999999999999999986

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=1.8e-39  Score=276.38  Aligned_cols=236  Identities=18%  Similarity=0.182  Sum_probs=174.8

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCC----CCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYS----PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      ..++|.....+|.|+|  |.||++..      .++|.......    .+.+.++...++.++||||+++++++.+.+..+
T Consensus         5 ~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~   82 (290)
T 3fme_A            5 KADDLEPIMELGRGAY--GVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVW   82 (290)
T ss_dssp             CGGGEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEE
T ss_pred             cHHhhhhHHhcCCCCC--eEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEE
Confidence            3568888999999999  99999822      11222221111    112234555688899999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           90 TEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      +||||++ |+|.+++...  ....+++..++.++.|++.||.|||+++  +++|+||||+||+++.++.+||+|||++..
T Consensus        83 lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  159 (290)
T 3fme_A           83 ICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGY  159 (290)
T ss_dssp             EEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC-----
T ss_pred             EEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCccc
Confidence            9999997 5888887642  4467999999999999999999999842  899999999999999999999999999864


Q ss_pred             c----------CCCCcCCCccc----ccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          168 L----------SDKGCMAPECY----KRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       168 ~----------~~~~~~ape~~----~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      .          +++.|+|||.+    ....++.++||||||+++|+|++|..||.........  +..    ....    
T Consensus       160 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~--~~~----~~~~----  229 (290)
T 3fme_A          160 LVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQ--LKQ----VVEE----  229 (290)
T ss_dssp             ----------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHH--HHH----HHHS----
T ss_pred             ccccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHH--HHH----Hhcc----
Confidence            3          36789999996    4556889999999999999999999999643221111  110    0000    


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                        ..+...+...+..+.+++.+||+.||++|||+.|+++
T Consensus       230 --~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          230 --PSPQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             --CCCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             --CCCCcccccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence              0111123345678999999999999999999999986

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=3.4e-39  Score=289.49  Aligned_cols=239  Identities=15%  Similarity=0.091  Sum_probs=177.2

Q ss_pred             hccccccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC------cceE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS------KPST   90 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~l   90 (274)
                      .|...+.||.|+|  |.||++..      .++|.+..  ..+...+|+++|++++|||||++++++...+      ..++
T Consensus        55 ~y~~~~~lG~G~f--g~Vy~~~~~~~~~~vaiK~~~~--~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~l  130 (420)
T 1j1b_A           55 SYTDTKVIGNGSF--GVVYQAKLCDSGELVAIKKVLQ--DKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL  130 (420)
T ss_dssp             EEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEC--CTTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEE
T ss_pred             eEEeeeEEeeCCC--EEEEEEEECCCCcEEEEEEecc--cchhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEe
Confidence            5777889999999  99999822      12222222  3344558999999999999999999986421      3679


Q ss_pred             EEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcEEEecccccee
Q 048314           91 EAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKISDFGLAKL  167 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~d~g~~~~  167 (274)
                      ||||+++ +|.+.+...  ....+++..++.++.|++.||.|||+.   +|+||||||+|||++.+ +.+||+|||+++.
T Consensus       131 v~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~  206 (420)
T 1j1b_A          131 VLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ  206 (420)
T ss_dssp             EEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             ehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhhh
Confidence            9999985 676666531  456799999999999999999999999   99999999999999955 6789999999975


Q ss_pred             cC----------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH--hhhhhhh
Q 048314          168 LS----------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF--INRELNK  234 (274)
Q Consensus       168 ~~----------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  234 (274)
                      ..          ++.|+|||++.+. .++.++|||||||++|||++|+.||....   ....+...+...-  ....+..
T Consensus       207 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~---~~~~l~~i~~~lg~p~~~~~~~  283 (420)
T 1j1b_A          207 LVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS---GVDQLVEIIKVLGTPTREQIRE  283 (420)
T ss_dssp             CCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHHHHHHHHCSCCHHHHHH
T ss_pred             cccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCC---HHHHHHHHHHHhCCCCHHHHHh
Confidence            32          5679999998764 68999999999999999999999997431   1111111111000  0000000


Q ss_pred             -------hhcCC--------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          235 -------LVRGT--------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       235 -------~~~~~--------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                             ...+.        .++...+.++.+|+.+||+.||++|||+.|+++
T Consensus       284 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          284 MNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             HCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence                   00000        012334578999999999999999999999986

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=1.1e-39  Score=287.30  Aligned_cols=246  Identities=18%  Similarity=0.187  Sum_probs=184.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-CCCCcHHHHHHHHhcCC-----------CCccceEeEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-YSPSRPLTLTSIVSRVS-----------WTTDIEVSSVA   82 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-~~~~~~~~e~~~l~~l~-----------h~niv~l~~~~   82 (274)
                      .++|.....+|.|+|  |.||++..      .++|..... ...+.+.+|+.++++++           ||||+++++++
T Consensus        18 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~   95 (373)
T 1q8y_A           18 DARYILVRKLGWGHF--STVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHF   95 (373)
T ss_dssp             TTTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEE
T ss_pred             CCeEEEEEeeeecCC--eEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHh
Confidence            357888899999999  99999831      112222211 12345678999999887           88999999998


Q ss_pred             EeCC----cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc------
Q 048314           83 MRGS----KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD------  152 (274)
Q Consensus        83 ~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~------  152 (274)
                      ...+    ..++||||+ +++|.+++.......+++..++.++.|++.||.|||+++  +++||||||+||+++      
T Consensus        96 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~~  172 (373)
T 1q8y_A           96 NHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPE  172 (373)
T ss_dssp             EEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTT
T ss_pred             hccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCCc
Confidence            7644    789999999 899999998766667999999999999999999999942  899999999999994      


Q ss_pred             CCCcEEEeccccceecC--------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChh---hHHHHH
Q 048314          153 EFWTAKISDFGLAKLLS--------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPE---EIILTN  221 (274)
Q Consensus       153 ~~~~~kl~d~g~~~~~~--------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~---~~~~~~  221 (274)
                      ..+.+||+|||++....        ++.|+|||.+....++.++||||||+++|+|++|..||........   ...+..
T Consensus       173 ~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~  252 (373)
T 1q8y_A          173 NLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQ  252 (373)
T ss_dssp             TEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHH
T ss_pred             CcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHH
Confidence            44589999999986543        6779999999988899999999999999999999999975422111   111111


Q ss_pred             HHHHHHh--------hhh----------------------hhhhh-cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhH
Q 048314          222 WVYKCFI--------NRE----------------------LNKLV-RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCV  270 (274)
Q Consensus       222 ~~~~~~~--------~~~----------------------~~~~~-~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ev  270 (274)
                      .. ....        +..                      ..... .....+...+..+.+++.+||+.||++|||++|+
T Consensus       253 ~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el  331 (373)
T 1q8y_A          253 II-ELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGL  331 (373)
T ss_dssp             HH-HHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHH
T ss_pred             HH-HhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHH
Confidence            10 0000        000                      00000 1113567788999999999999999999999999


Q ss_pred             Hh
Q 048314          271 VM  272 (274)
Q Consensus       271 l~  272 (274)
                      ++
T Consensus       332 l~  333 (373)
T 1q8y_A          332 VN  333 (373)
T ss_dssp             HT
T ss_pred             hh
Confidence            86

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=1.8e-39  Score=292.19  Aligned_cols=179  Identities=20%  Similarity=0.242  Sum_probs=149.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeC-----
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG-----   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----   85 (274)
                      .++|...+.||.|+|  |.||++..      .++|.+...    ...+++.+|+.+|++++||||+++++++...     
T Consensus        25 ~~~y~~~~~lG~G~~--g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~  102 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSY--GYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKF  102 (432)
T ss_dssp             CTTEEEEEEEEEETT--EEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTC
T ss_pred             cCCEEEEEEEeecCC--EEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcC
Confidence            467888999999999  99999921      222222221    1234577999999999999999999999765     


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      ...++||||+. |+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++
T Consensus       103 ~~~~lv~e~~~-~~L~~~~~~--~~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla  176 (432)
T 3n9x_A          103 DELYIVLEIAD-SDLKKLFKT--PIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLA  176 (432)
T ss_dssp             CCEEEEEECCS-EEHHHHHHS--SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             CeEEEEEecCC-cCHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCc
Confidence            56899999986 699999975  45799999999999999999999999   9999999999999999999999999998


Q ss_pred             eecC---------------------------------CCCcCCCccc-ccCCCccccceeehhHhHHHHhhcCCCc
Q 048314          166 KLLS---------------------------------DKGCMAPECY-KRTPISVKADVYGYGIVLLETICCWENM  207 (274)
Q Consensus       166 ~~~~---------------------------------~~~~~ape~~-~~~~~~~~~Di~s~G~~l~el~~g~~p~  207 (274)
                      +...                                 ++.|+|||++ ....++.++||||+||++|||++|..||
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~  252 (432)
T 3n9x_A          177 RTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH  252 (432)
T ss_dssp             EEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             ccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence            7532                                 5669999986 4566899999999999999999854444

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=2.8e-39  Score=284.67  Aligned_cols=244  Identities=17%  Similarity=0.171  Sum_probs=182.3

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEeC-----
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRG-----   85 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----   85 (274)
                      ..++|...+.+|.|+|  |.||++..      .++|.+....   ..+.+.+|++++++++||||+++++++...     
T Consensus        25 ~~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~  102 (364)
T 3qyz_A           25 VGPRYTNLSYIGEGAY--GMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQM  102 (364)
T ss_dssp             CTTTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTC
T ss_pred             ccccEEEEEEeecCCC--eEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCcccc
Confidence            3467888999999999  99999821      1222222211   124567999999999999999999999754     


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      ...++||||+. |+|.+++..   ..+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++
T Consensus       103 ~~~~iv~e~~~-~~L~~~l~~---~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a  175 (364)
T 3qyz_A          103 KDVYIVQDLME-TDLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLA  175 (364)
T ss_dssp             CCEEEEEECCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEcccC-cCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcce
Confidence            36899999997 599999975   4699999999999999999999999   9999999999999999999999999998


Q ss_pred             eec--------------CCCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH------
Q 048314          166 KLL--------------SDKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY------  224 (274)
Q Consensus       166 ~~~--------------~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~------  224 (274)
                      ...              +++.|+|||.+.. ..++.++||||||+++|+|++|..||...........+.....      
T Consensus       176 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~  255 (364)
T 3qyz_A          176 RVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQED  255 (364)
T ss_dssp             EECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHH
T ss_pred             EecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHH
Confidence            643              2567999998754 4589999999999999999999999965422111111110000      


Q ss_pred             -HHHhhhhhh----hhhcCCc-----cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          225 -KCFINRELN----KLVRGTE-----VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       225 -~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       ....+....    .......     .....+.++.+++.+||+.||++|||+.|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  313 (364)
T 3qyz_A          256 LNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  313 (364)
T ss_dssp             HHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence             000000000    0000001     11234577899999999999999999999986

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=9.1e-40  Score=284.91  Aligned_cols=238  Identities=14%  Similarity=0.130  Sum_probs=165.0

Q ss_pred             Hhhhccc-cccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHH-HHhcCCCCccceEeEEEEe----CCc
Q 048314           20 KLRNFCR-SSLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTS-IVSRVSWTTDIEVSSVAMR----GSK   87 (274)
Q Consensus        20 ~~~~f~~-~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~----~~~   87 (274)
                      ..++|.. ..++|.|+|  |.||++..      .++|.+..   .....+|+. .++.++||||+++++++..    ...
T Consensus        26 ~~~~y~i~~~~lG~G~~--g~V~~~~~~~~~~~vavK~~~~---~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~  100 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVN--GKVLECFHRRTGQKCALKLLYD---SPKARQEVDHHWQASGGPHIVCILDVYENMHHGKRC  100 (336)
T ss_dssp             GGGTEEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEES---SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             ccceeEecceeeeeCCC--eEEEEEEECCCCCEEEEEEecC---cHHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCce
Confidence            3567776 457999999  99999822      11222221   122334443 4567789999999999876    445


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEecccc
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGL  164 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~d~g~  164 (274)
                      .++||||+++|+|.+++.......+++..++.++.|++.||.|||+.   +++||||||+||+++.   ++.+||+|||+
T Consensus       101 ~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~  177 (336)
T 3fhr_A          101 LLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGF  177 (336)
T ss_dssp             EEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred             EEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEecccc
Confidence            89999999999999999975556799999999999999999999999   9999999999999975   45599999999


Q ss_pred             ceecC---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          165 AKLLS---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       165 ~~~~~---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      +....         ++.|+|||.+....++.++||||||+++|+|++|..||.............    ....   ....
T Consensus       178 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~----~~~~---~~~~  250 (336)
T 3fhr_A          178 AKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMK----RRIR---LGQY  250 (336)
T ss_dssp             CEEC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----------------------------
T ss_pred             ceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHH----Hhhh---cccc
Confidence            87543         567999999988888999999999999999999999996432111000000    0000   0000


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..+.......+..+.+++.+||+.||++|||+.|+++
T Consensus       251 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  287 (336)
T 3fhr_A          251 GFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN  287 (336)
T ss_dssp             CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            0111122345678999999999999999999999986

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=6.2e-39  Score=284.28  Aligned_cols=191  Identities=18%  Similarity=0.194  Sum_probs=156.0

Q ss_pred             hHHHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-CCCCcHHHHHHHHhcCC-CC-----ccceEeEEE
Q 048314           16 SLCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-YSPSRPLTLTSIVSRVS-WT-----TDIEVSSVA   82 (274)
Q Consensus        16 ~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-~~~~~~~~e~~~l~~l~-h~-----niv~l~~~~   82 (274)
                      .-....++|...+.||.|+|  |.||+|..      .++|.+... ...+.+.+|+.+++.++ |+     +|+++++++
T Consensus        48 ~~~~~~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~  125 (382)
T 2vx3_A           48 NGEKWMDRYEIDSLIGKGSF--GQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHF  125 (382)
T ss_dssp             TTCEETTTEEEEEEEEEETT--EEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEE
T ss_pred             cCCEeeeeEEEEEEEeecCC--EEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeee
Confidence            33444678888899999999  99999921      122222211 11234567888888875 55     499999999


Q ss_pred             EeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc--CCCcEEEe
Q 048314           83 MRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD--EFWTAKIS  160 (274)
Q Consensus        83 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~--~~~~~kl~  160 (274)
                      ...+..++||||+. |+|.+++.......+++..++.++.|++.||.|||++ ..+|+||||||+||++.  .++.+||+
T Consensus       126 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~  203 (382)
T 2vx3_A          126 MFRNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIV  203 (382)
T ss_dssp             EETTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEEC
T ss_pred             ccCCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEE
Confidence            99999999999996 5999999886556799999999999999999999952 12899999999999994  47889999


Q ss_pred             ccccceecC--------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCcccc
Q 048314          161 DFGLAKLLS--------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEID  210 (274)
Q Consensus       161 d~g~~~~~~--------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~  210 (274)
                      |||++....        ++.|+|||++....++.++|||||||++|||++|+.||...
T Consensus       204 DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          204 DFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             CCTTCEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eccCceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999987543        66799999999989999999999999999999999999743

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=3.7e-39  Score=274.65  Aligned_cols=233  Identities=18%  Similarity=0.181  Sum_probs=183.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHh----cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATV----NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~----~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      .++|.....+|.|++  |.||++..      .++|..    ......+.+.+|++++++++||||+++++++.+.+..++
T Consensus        21 ~~~y~i~~~lg~G~~--g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   98 (287)
T 2wei_A           21 AERYNIVCMLGKGSF--GEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI   98 (287)
T ss_dssp             HHHEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhcceeeEEEcCCCC--EEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEE
Confidence            468888999999999  99999821      122221    122334567899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEecccccee
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGLAKL  167 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~d~g~~~~  167 (274)
                      ||||+++++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||+|+||+++.   ++.+||+|||++..
T Consensus        99 v~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~  173 (287)
T 2wei_A           99 VGELYTGGELFDEIIK--RKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTC  173 (287)
T ss_dssp             EECCCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGT
T ss_pred             EEEccCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCccee
Confidence            9999999999999875  34699999999999999999999999   9999999999999965   34799999998865


Q ss_pred             cC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          168 LS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       168 ~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                      ..          ++.|+|||.+.+ .++.++|+||||+++|+|++|..||....   .. .+.    .....+...   .
T Consensus       174 ~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~---~~-~~~----~~~~~~~~~---~  241 (287)
T 2wei_A          174 FQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN---EY-DIL----KRVETGKYA---F  241 (287)
T ss_dssp             BCCCSSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS---HH-HHH----HHHHHCCCC---C
T ss_pred             ecCCCccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCC---HH-HHH----HHHHcCCCC---C
Confidence            43          346999998865 48899999999999999999999996431   11 111    111111100   0


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +.+.....+..+.+++.+||+.||++|||+.|+++
T Consensus       242 ~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          242 DLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             CSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence            00111234578999999999999999999999986

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=2e-39  Score=280.77  Aligned_cols=232  Identities=22%  Similarity=0.222  Sum_probs=184.9

Q ss_pred             hhhhHHHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--------CCCCcHHHHHHHHhcCC--CCccc
Q 048314           13 ARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--------YSPSRPLTLTSIVSRVS--WTTDI   76 (274)
Q Consensus        13 ~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--------~~~~~~~~e~~~l~~l~--h~niv   76 (274)
                      +..+.....++|.....+|.|+|  |.||+|..      .++|.+...        ...+.+.+|+.++++++  ||||+
T Consensus        34 ~~~~~~~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~  111 (320)
T 3a99_A           34 PGKEKEPLESQYQVGPLLGSGGF--GSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI  111 (320)
T ss_dssp             ------CCTTTEEEEEECSSSSS--CEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBC
T ss_pred             cccccCCccCceEEEEEEeeCCC--eEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCce
Confidence            33444445678888999999999  99999821      122222111        23466789999999996  59999


Q ss_pred             eEeEEEEeCCcceEEEEeCCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CC
Q 048314           77 EVSSVAMRGSKPSTEAALDLP-WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EF  154 (274)
Q Consensus        77 ~l~~~~~~~~~~~lv~e~~~~-gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-~~  154 (274)
                      ++++++.+.+..++|+|++.+ ++|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+||+++ .+
T Consensus       112 ~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~  186 (320)
T 3a99_A          112 RLLDWFERPDSFVLILERPEPVQDLFDFITE--RGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNR  186 (320)
T ss_dssp             CEEEEEECSSEEEEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTT
T ss_pred             EEEEEEecCCcEEEEEEcCCCCccHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCC
Confidence            999999999999999999976 899999986  45799999999999999999999999   999999999999998 78


Q ss_pred             CcEEEeccccceecC---------CCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH
Q 048314          155 WTAKISDFGLAKLLS---------DKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY  224 (274)
Q Consensus       155 ~~~kl~d~g~~~~~~---------~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~  224 (274)
                      +.+||+|||++....         ++.|+|||.+....+ +.++||||||+++|+|++|..||...    ..        
T Consensus       187 ~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~----~~--------  254 (320)
T 3a99_A          187 GELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----EE--------  254 (320)
T ss_dssp             TEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----HH--------
T ss_pred             CCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh----hh--------
Confidence            899999999987543         567999999887665 68899999999999999999999532    00        


Q ss_pred             HHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          225 KCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                        ....       ....+...+..+.+++.+||+.||++|||+.|+++
T Consensus       255 --~~~~-------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          255 --IIRG-------QVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN  293 (320)
T ss_dssp             --HHHC-------CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             --hhcc-------cccccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence              0000       01123344578899999999999999999999986

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=8.7e-40  Score=288.38  Aligned_cols=239  Identities=16%  Similarity=0.172  Sum_probs=169.2

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeC-----
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG-----   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----   85 (274)
                      .++|...+.+|.|+|  |.||++.      ..++|.+...    ...+++.+|+.++++++||||+++++++...     
T Consensus        28 ~~~y~~~~~lG~G~~--g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~  105 (367)
T 2fst_X           28 PERYQNLSPVGSGAY--GSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE  105 (367)
T ss_dssp             ETTEEEEEECC------CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGG
T ss_pred             CCceEEeeEEeecCC--eEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCcccc
Confidence            467888999999999  9999982      1122222211    1234567999999999999999999998654     


Q ss_pred             -CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           86 -SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        86 -~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                       ...++|+|++ +++|.+++..   ..+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+
T Consensus       106 ~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~  178 (367)
T 2fst_X          106 FNDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGL  178 (367)
T ss_dssp             CCCCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC---
T ss_pred             CCeEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeeccc
Confidence             5679999998 6899999864   5699999999999999999999999   999999999999999999999999999


Q ss_pred             ceec--------CCCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH--------
Q 048314          165 AKLL--------SDKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF--------  227 (274)
Q Consensus       165 ~~~~--------~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~--------  227 (274)
                      ++..        ++..|+|||.+.. ..++.++||||+||++|+|++|+.||.....   . .....+....        
T Consensus       179 a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~-~~l~~i~~~~g~p~~~~~  254 (367)
T 2fst_X          179 ARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH---I-DQLKLILRLVGTPGAELL  254 (367)
T ss_dssp             ------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSH---H-HHHHHHHHHHCSCCHHHH
T ss_pred             cccccccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCH---H-HHHHHHHHHhCCCCHHHH
Confidence            8653        3678999999876 5789999999999999999999999964311   1 1111111100        


Q ss_pred             ---hhhhhhhhhcC----Ccc-----CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 ---INRELNKLVRG----TEV-----DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 ---~~~~~~~~~~~----~~~-----~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         .+......+..    ...     ....+..+.+|+.+||+.||++|||+.|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~  311 (367)
T 2fst_X          255 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  311 (367)
T ss_dssp             TTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence               00001111110    001     1123567899999999999999999999986

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=2.4e-39  Score=285.93  Aligned_cols=239  Identities=16%  Similarity=0.149  Sum_probs=180.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCC----CCcHHHHHHHHhcCCCCccceEeEEEEeCCcc--
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYS----PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP--   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~--   88 (274)
                      .++|...+.+|.|+|  |.||+|.      ..++|.+.....    .+.+.+|+.++++++||||+++++++...+..  
T Consensus        41 ~~~y~~~~~lG~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~  118 (371)
T 4exu_A           41 PKTYVSPTHVGSGAY--GSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRN  118 (371)
T ss_dssp             ETTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTT
T ss_pred             cccEEEEeEEecCCC--eEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCccc
Confidence            367778899999999  9999982      112222222211    24567899999999999999999999876654  


Q ss_pred             ----eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           89 ----STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        89 ----~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                          ++||||+. ++|.+++.    ..+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+
T Consensus       119 ~~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~  190 (371)
T 4exu_A          119 FYDFYLVMPFMQ-TDLQKIMG----MEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGL  190 (371)
T ss_dssp             CCCCEEEEECCC-EEHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTC
T ss_pred             ceeEEEEEcccc-ccHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCc
Confidence                99999997 68888874    3599999999999999999999999   999999999999999999999999999


Q ss_pred             ceec--------CCCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH--------
Q 048314          165 AKLL--------SDKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF--------  227 (274)
Q Consensus       165 ~~~~--------~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~--------  227 (274)
                      +...        +++.|+|||.+.. ..++.++||||||+++|+|++|..||....   ....+........        
T Consensus       191 a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~---~~~~~~~i~~~~~~~~~~~~~  267 (371)
T 4exu_A          191 ARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD---YLDQLTQILKVTGVPGTEFVQ  267 (371)
T ss_dssp             C--------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSS---HHHHHHHHHHHHCCCCHHHHT
T ss_pred             ccccccCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC---hHHHHHHHHHHhCCCcHHHHH
Confidence            8643        3678999999877 678999999999999999999999997431   1111111110000        


Q ss_pred             --h----hhhhhhhhcCC-----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 --I----NRELNKLVRGT-----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 --~----~~~~~~~~~~~-----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                        .    ...........     ......+..+.+++.+||+.||++|||++|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  323 (371)
T 4exu_A          268 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  323 (371)
T ss_dssp             TCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence              0    00000000000     112234678999999999999999999999986

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=4.7e-39  Score=277.28  Aligned_cols=238  Identities=18%  Similarity=0.174  Sum_probs=185.8

Q ss_pred             hhhhhhHHHHhhhccccccCCCCCCCCcchhHHHH-----HHHHHhcCCC----CCCcHHHHHHHHhcCC--CCccceEe
Q 048314           11 WIARSSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSPY----SPSRPLTLTSIVSRVS--WTTDIEVS   79 (274)
Q Consensus        11 ~~~~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~~----~~~~~~~e~~~l~~l~--h~niv~l~   79 (274)
                      .+.+..+....++|...+.+|.|+|  |.||++..     .++|......    ..+.+.+|+.++.+++  ||||++++
T Consensus        17 ~~~~~~~~~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~   94 (313)
T 3cek_A           17 NLYFQSMSVKGRIYSILKQIGSGGS--SKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLY   94 (313)
T ss_dssp             ---CCEEEETTEEEEEEEEEECCSS--EEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEE
T ss_pred             CCCeeeeeeccceEEEEEEecCCCC--EEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEE
Confidence            3455556666788999999999999  99998822     1222222211    1245679999999997  49999999


Q ss_pred             EEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 048314           80 SVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI  159 (274)
Q Consensus        80 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl  159 (274)
                      +++.+.+..++||| +.+++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||++++ +.+||
T Consensus        95 ~~~~~~~~~~lv~e-~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL  167 (313)
T 3cek_A           95 DYEITDQYIYMVME-CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKL  167 (313)
T ss_dssp             EEEECSSEEEEEEC-CCSEEHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEE
T ss_pred             EEeecCCEEEEEEe-cCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEE
Confidence            99999999999999 678899999986  45789999999999999999999999   9999999999999965 79999


Q ss_pred             eccccceec-------------CCCCcCCCccccc-----------CCCccccceeehhHhHHHHhhcCCCccccCCChh
Q 048314          160 SDFGLAKLL-------------SDKGCMAPECYKR-----------TPISVKADVYGYGIVLLETICCWENMEIDASKPE  215 (274)
Q Consensus       160 ~d~g~~~~~-------------~~~~~~ape~~~~-----------~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~  215 (274)
                      +|||++...             +++.|+|||.+..           ..++.++||||||+++|+|++|..||....... 
T Consensus       168 ~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-  246 (313)
T 3cek_A          168 IDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-  246 (313)
T ss_dssp             CCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH-
T ss_pred             eeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHH-
Confidence            999998643             2667999999865           467889999999999999999999996431110 


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhcC---CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          216 EIILTNWVYKCFINRELNKLVRG---TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       ..             .....++   ...+...+..+.+++.+||+.||++|||+.|+++
T Consensus       247 -~~-------------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  292 (313)
T 3cek_A          247 -SK-------------LHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  292 (313)
T ss_dssp             -HH-------------HHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -HH-------------HHHHHhcccccCCcccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence             00             0011111   1233344578999999999999999999999986

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=4.4e-39  Score=277.40  Aligned_cols=240  Identities=15%  Similarity=0.121  Sum_probs=175.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEE---------
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAM---------   83 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~---------   83 (274)
                      .++|...+.+|.|+|  |.||++..      .++|.....  ...+.+.+|+.++++++||||+++++++.         
T Consensus        10 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   87 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGN--GLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDD   87 (320)
T ss_dssp             TTTEEEEEECC-------CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC-
T ss_pred             CCceeEEEEeccCCC--eEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccc
Confidence            356778899999999  99999821      112222211  22345779999999999999999999873         


Q ss_pred             -----eCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CCCcE
Q 048314           84 -----RGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWTA  157 (274)
Q Consensus        84 -----~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-~~~~~  157 (274)
                           +.+..++||||+. |+|.+++..   +.+++..++.++.|++.||.|||+.   +++|+||||+||+++ .++.+
T Consensus        88 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~  160 (320)
T 2i6l_A           88 VGSLTELNSVYIVQEYME-TDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVL  160 (320)
T ss_dssp             ---CCSCSEEEEEEECCS-EEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEE
T ss_pred             cccccccCceeEEeeccC-CCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeE
Confidence                 3467899999997 699999964   5699999999999999999999999   999999999999997 56799


Q ss_pred             EEeccccceecC--------------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHH
Q 048314          158 KISDFGLAKLLS--------------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW  222 (274)
Q Consensus       158 kl~d~g~~~~~~--------------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~  222 (274)
                      ||+|||.+....              +..|+|||.+.. ..++.++||||||+++|+|++|+.||.....   ...+...
T Consensus       161 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~---~~~~~~~  237 (320)
T 2i6l_A          161 KIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHE---LEQMQLI  237 (320)
T ss_dssp             EECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHH
T ss_pred             EEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCH---HHHHHHH
Confidence            999999987532              556999998865 6789999999999999999999999974421   1111111


Q ss_pred             HHHHH--hhhhhh------------hhhcCC----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          223 VYKCF--INRELN------------KLVRGT----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       223 ~~~~~--~~~~~~------------~~~~~~----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .....  ......            ....+.    ......+..+.+++.+||+.||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          238 LESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             HHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             HHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence            00000  000000            000010    112234678999999999999999999999986

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=4.5e-39  Score=281.65  Aligned_cols=239  Identities=17%  Similarity=0.163  Sum_probs=182.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEeC-----C
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRG-----S   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~   86 (274)
                      .++|...+.+|.|+|  |.||++..      .++|......   ....+.+|+.++++++||||+++++++...     .
T Consensus        10 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   87 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAY--GVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN   87 (353)
T ss_dssp             CTTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred             ccceEEeeEEcCCCC--eEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence            568888999999999  99999821      1222222111   123456899999999999999999998654     6


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++||||+. |+|.+++..   ..+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++.
T Consensus        88 ~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~  160 (353)
T 2b9h_A           88 EVYIIQELMQ-TDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLAR  160 (353)
T ss_dssp             CEEEEECCCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             eEEEEEeccC-ccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEeccccc
Confidence            7899999997 699999976   4699999999999999999999999   99999999999999999999999999987


Q ss_pred             ecC---------------------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHH
Q 048314          167 LLS---------------------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVY  224 (274)
Q Consensus       167 ~~~---------------------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~  224 (274)
                      ...                     ++.|+|||.+.. ..++.++||||||+++|+|++|..||.....   ...+.. ..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~-~~  236 (353)
T 2b9h_A          161 IIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDY---RHQLLL-IF  236 (353)
T ss_dssp             ECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHH-HH
T ss_pred             ccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCc---HHHHHH-HH
Confidence            532                     556999998764 6789999999999999999999999974421   111111 10


Q ss_pred             HHHhh------------hhhhhhhcC-----C----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          225 KCFIN------------RELNKLVRG-----T----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       225 ~~~~~------------~~~~~~~~~-----~----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .....            ......+..     .    ......+..+.+++.+||+.||++|||+.|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          237 GIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             HHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            10000            000000000     0    111244678899999999999999999999986

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=7e-40  Score=289.21  Aligned_cols=235  Identities=7%  Similarity=-0.039  Sum_probs=165.1

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCC-----CCCcHHHH---HHHHhcCCCCccceEe-------
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPY-----SPSRPLTL---TSIVSRVSWTTDIEVS-------   79 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~-----~~~~~~~e---~~~l~~l~h~niv~l~-------   79 (274)
                      ..+|...+.+|.|+|  |.||+|..      .++|.+....     ..+.+.+|   +..|+. +||||++++       
T Consensus        61 ~~~y~~~~~lG~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~  137 (371)
T 3q60_A           61 ERKLKLVEPLRVGDR--SVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPS  137 (371)
T ss_dssp             EEEEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCC
T ss_pred             ceeeeeeeeccCCCC--EEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeee
Confidence            345777889999999  99999931      1223232221     12334567   455555 799988755       


Q ss_pred             EEEEeCC-----------------cceEEEEeCCCCCHHHHHHhCCCCCCCHHHH------HHHHHHHHHHHHHHhcCCC
Q 048314           80 SVAMRGS-----------------KPSTEAALDLPWDLAYIIFCSAERNPYWNQR------VRIALDVAKGILYLHDECE  136 (274)
Q Consensus        80 ~~~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~------~~~~~~i~~~l~~lh~~~~  136 (274)
                      +++...+                 ..++|||||+ |+|.+++... ...+++..+      ..++.|++.||.|||++  
T Consensus       138 d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~-~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~--  213 (371)
T 3q60_A          138 DAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL-DFVYVFRGDEGILALHILTAQLIRLAANLQSK--  213 (371)
T ss_dssp             EEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH-HHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             hheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh-ccccchhhhhhhhhHHHHHHHHHHHHHHHHHC--
Confidence            5554432                 3799999999 8999999863 234566666      78889999999999999  


Q ss_pred             CCcccCCCCCCceEEcCCCcEEEeccccceecC--------CCCcCCCccccc--CCCccccceeehhHhHHHHhhcCCC
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--------DKGCMAPECYKR--TPISVKADVYGYGIVLLETICCWEN  206 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--------~~~~~ape~~~~--~~~~~~~Di~s~G~~l~el~~g~~p  206 (274)
                       +++||||||+||+++.++.+||+|||+++...        ++.|+|||.+..  ..++.++|||||||++|+|++|+.|
T Consensus       214 -~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~P  292 (371)
T 3q60_A          214 -GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLP  292 (371)
T ss_dssp             -TEEETTCSGGGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCS
T ss_pred             -CCccCcCCHHHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCC
Confidence             99999999999999999999999999987543        577999999987  6789999999999999999999999


Q ss_pred             ccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          207 MEIDASKPEEIILTNWVYKCFINRELNKLVRGT---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      |..........         .............   ......+..+.+++.+||+.||++|||+.|+++
T Consensus       293 f~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          293 FGLVTPGIKGS---------WKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             TTBCCTTCTTC---------CCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             CCCcCcccccc---------hhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            97542110000         0000000000000   112345678999999999999999999999975

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.4e-39  Score=288.15  Aligned_cols=234  Identities=18%  Similarity=0.178  Sum_probs=176.5

Q ss_pred             HHhhhccccccCCCCCCCCcch-hHH----HHHHHHHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEE
Q 048314           19 TKLRNFCRSSLNDRNSPRSKSV-WSC----MRALMATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        19 ~~~~~f~~~~~~g~g~~~~g~v-y~~----~~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ....+|.....||.|+|  |.| |++    ...++|.+. ....+.+.+|+.+|+++ +|||||++++++.+....++||
T Consensus        21 i~~~~y~~~~~LG~G~~--G~V~~~~~~~~~~vAvK~~~-~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~   97 (432)
T 3p23_A           21 VGKISFCPKDVLGHGAE--GTIVYRGMFDNRDVAVKRIL-PECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAI   97 (432)
T ss_dssp             ETTEEEEEEEEEEECGG--GCEEEEEESSSSEEEEEEEC-TTTEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             EccEEEecCCeeecCcC--EEEEEEEEeCCeEEEEEEEC-HHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEE
Confidence            34457888999999999  874 433    222222222 23345577999999999 7999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-----CCCcEEEecccccee
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-----EFWTAKISDFGLAKL  167 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-----~~~~~kl~d~g~~~~  167 (274)
                      |||. |+|.+++... ...+++...+.++.|++.||.|||+.   +|+||||||+||++.     ....++|+|||+++.
T Consensus        98 E~~~-g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~  172 (432)
T 3p23_A           98 ELCA-ATLQEYVEQK-DFAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK  172 (432)
T ss_dssp             ECCS-EEHHHHHHSS-SCCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEEC
T ss_pred             ECCC-CCHHHHHHhc-CCCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceee
Confidence            9996 6999999863 34456666788999999999999999   999999999999994     334688999999864


Q ss_pred             c--------------CCCCcCCCcccc---cCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhh
Q 048314          168 L--------------SDKGCMAPECYK---RTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFIN  229 (274)
Q Consensus       168 ~--------------~~~~~~ape~~~---~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                      .              +++.|+|||++.   ...++.++|||||||++|||++ |..||.....  ....      . ...
T Consensus       173 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~--~~~~------~-~~~  243 (432)
T 3p23_A          173 LAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ--RQAN------I-LLG  243 (432)
T ss_dssp             C------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT--HHHH------H-HTT
T ss_pred             ccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH--HHHH------H-Hhc
Confidence            3              367899999987   3567789999999999999999 8888853311  0000      0 000


Q ss_pred             hhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          230 RELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..   .......+......+.+++.+||+.||++|||+.||++
T Consensus       244 ~~---~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          244 AC---SLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             CC---CCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cC---CccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence            00   00111223455667899999999999999999999985

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.9e-39  Score=276.94  Aligned_cols=228  Identities=19%  Similarity=0.173  Sum_probs=177.3

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC--------CCCCcHHHHHHHHhcC----CCCccceEe
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP--------YSPSRPLTLTSIVSRV----SWTTDIEVS   79 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~--------~~~~~~~~e~~~l~~l----~h~niv~l~   79 (274)
                      ....++|...+.+|.|+|  |.||+|..      .++|.....        .....+.+|+.++.++    +||||++++
T Consensus        27 ~~~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~  104 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGF--GTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL  104 (312)
T ss_dssp             ------CEEEEEEEEETT--EEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred             hhhhhceEEeeEEEcCCC--EEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence            444678999999999999  99999821      122222211        2345567899999998    899999999


Q ss_pred             EEEEeCCcceEEEEe-CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CCCcE
Q 048314           80 SVAMRGSKPSTEAAL-DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWTA  157 (274)
Q Consensus        80 ~~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-~~~~~  157 (274)
                      +++.+.+..++|+|+ +.+++|.+++..  ...+++..++.++.|++.||.|||+.   +++|+||||+||+++ .++.+
T Consensus       105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~  179 (312)
T 2iwi_A          105 DWFETQEGFMLVLERPLPAQDLFDYITE--KGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCA  179 (312)
T ss_dssp             EEC-----CEEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEE
T ss_pred             EEEecCCeEEEEEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeE
Confidence            999999999999999 789999999986  34699999999999999999999999   999999999999998 88999


Q ss_pred             EEeccccceecC---------CCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH
Q 048314          158 KISDFGLAKLLS---------DKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF  227 (274)
Q Consensus       158 kl~d~g~~~~~~---------~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~  227 (274)
                      +|+|||++....         +..|+|||.+....+ +.++||||||+++|+|++|+.||...    ..          .
T Consensus       180 kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~----~~----------~  245 (312)
T 2iwi_A          180 KLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD----QE----------I  245 (312)
T ss_dssp             EECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----HH----------H
T ss_pred             EEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh----HH----------H
Confidence            999999987543         567999999877665 45899999999999999999999532    00          0


Q ss_pred             hhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          228 INRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ..       .....+...+..+.+++.+||+.||++|||+.|+++.
T Consensus       246 ~~-------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  284 (312)
T 2iwi_A          246 LE-------AELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLD  284 (312)
T ss_dssp             HH-------TCCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             hh-------hccCCcccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            00       0112344556789999999999999999999999863

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=9.6e-39  Score=279.97  Aligned_cols=239  Identities=16%  Similarity=0.162  Sum_probs=181.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCC----CCcHHHHHHHHhcCCCCccceEeEEEEeCCc---
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYS----PSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK---   87 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~---   87 (274)
                      .++|.....+|.|+|  |.||++..      .++|.......    .+.+.+|+.++++++||||+++++++.+.+.   
T Consensus        23 ~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  100 (353)
T 3coi_A           23 PKTYVSPTHVGSGAY--GSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRN  100 (353)
T ss_dssp             ETTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGG
T ss_pred             CceEEEeeeEecCCC--eEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccc
Confidence            356788899999999  99999821      12222222111    2356789999999999999999999987654   


Q ss_pred             ---ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           88 ---PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        88 ---~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                         .++||||+. ++|.+++.    ..+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||+
T Consensus       101 ~~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~  172 (353)
T 3coi_A          101 FYDFYLVMPFMQ-TDLQKIMG----LKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGL  172 (353)
T ss_dssp             CCCCEEEEECCS-EEGGGTTT----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTC
T ss_pred             ceeEEEEecccc-CCHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeeccc
Confidence               499999997 68888774    3599999999999999999999999   999999999999999999999999999


Q ss_pred             ceec--------CCCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH---------
Q 048314          165 AKLL--------SDKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC---------  226 (274)
Q Consensus       165 ~~~~--------~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~---------  226 (274)
                      +...        +++.|+|||.+.. ..++.++||||||+++|+|++|..||.....   ...+.......         
T Consensus       173 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~  249 (353)
T 3coi_A          173 ARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY---LDQLTQILKVTGVPGTEFVQ  249 (353)
T ss_dssp             TTC--------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCH---HHHHHHHHHHHCBCCHHHHT
T ss_pred             ccCCCCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHHHhCCCCHHHHH
Confidence            8653        3678999998876 6788999999999999999999999975421   11111110000         


Q ss_pred             -Hhhhhhhhhhc-------C--CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          227 -FINRELNKLVR-------G--TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       227 -~~~~~~~~~~~-------~--~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       ..+......+.       .  .......+..+.+++.+||+.||++|||++|+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          250 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             TCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence             00000000000       0  0123355688999999999999999999999986

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=1.1e-38  Score=287.32  Aligned_cols=231  Identities=18%  Similarity=0.158  Sum_probs=170.0

Q ss_pred             cccccCCCCCCCCcchhHH-----HHHHHHHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEEeCCCC
Q 048314           25 CRSSLNDRNSPRSKSVWSC-----MRALMATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAALDLPW   98 (274)
Q Consensus        25 ~~~~~~g~g~~~~g~vy~~-----~~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~g   98 (274)
                      ...+.+|.|+|  |.||..     ...++|.... ...+.+.+|+.+++++ +|||||++++++.+.+..++|||||. |
T Consensus        18 ~~~~~LG~G~~--g~V~~~~~~~g~~vAvK~~~~-~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-g   93 (434)
T 2rio_A           18 VSEKILGYGSS--GTVVFQGSFQGRPVAVKRMLI-DFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-L   93 (434)
T ss_dssp             EEEEEEEECST--TCEEEEEESSSSEEEEEEEEG-GGHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-E
T ss_pred             eccCeEeeCCC--eEEEEEEEECCeEEEEEEEcH-HHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-C
Confidence            34688999999  988643     1111221111 1223467899999876 79999999999999999999999996 6


Q ss_pred             CHHHHHHhCCCCC-----CCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-------------CcEEEe
Q 048314           99 DLAYIIFCSAERN-----PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-------------WTAKIS  160 (274)
Q Consensus        99 sL~~~l~~~~~~~-----l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-------------~~~kl~  160 (274)
                      +|.+++.......     .++..++.++.|++.||.|||+.   +|+||||||+||+++.+             +.+||+
T Consensus        94 sL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~  170 (434)
T 2rio_A           94 NLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILIS  170 (434)
T ss_dssp             EHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEEC
T ss_pred             CHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEEEc
Confidence            9999998632211     12334578999999999999999   99999999999999653             589999


Q ss_pred             ccccceec---------------CCCCcCCCccccc-------CCCccccceeehhHhHHHHhh-cCCCccccCCChhhH
Q 048314          161 DFGLAKLL---------------SDKGCMAPECYKR-------TPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEI  217 (274)
Q Consensus       161 d~g~~~~~---------------~~~~~~ape~~~~-------~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~  217 (274)
                      |||++...               +++.|+|||++..       ..++.++|||||||++|||++ |..||..... . ..
T Consensus       171 DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~-~-~~  248 (434)
T 2rio_A          171 DFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS-R-ES  248 (434)
T ss_dssp             CCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT-H-HH
T ss_pred             ccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh-h-HH
Confidence            99998643               3567999999865       568899999999999999998 8999964311 1 10


Q ss_pred             HHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          218 ILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..        ..............+...+.++.+++.+||+.||++|||+.||++
T Consensus       249 ~i--------~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          249 NI--------IRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             HH--------HHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HH--------hcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence            00        011000000011234567789999999999999999999999986

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=2.1e-38  Score=273.29  Aligned_cols=239  Identities=15%  Similarity=0.166  Sum_probs=170.5

Q ss_pred             hHHHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCCC----CcHHHHHHHHhcCCCCccceEeEEEEeC
Q 048314           16 SLCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYSP----SRPLTLTSIVSRVSWTTDIEVSSVAMRG   85 (274)
Q Consensus        16 ~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~----~~~~~e~~~l~~l~h~niv~l~~~~~~~   85 (274)
                      +.....++|.....+|.|+|  |.||++..      .++|........    +.+.++..+++.++||||+++++++.+.
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~--g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~   96 (318)
T 2dyl_A           19 RYQAEINDLENLGEMGSGTC--GQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITN   96 (318)
T ss_dssp             EEECCGGGEEEEEEC--------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred             hhhhhhccccccceeeecCC--eeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecC
Confidence            34455678888899999999  99999822      122222221111    1223445578888999999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      +..++||||+ ++.+..+... ....+++..++.++.|++.||.|||+ .   +++|+||||+||+++.++.+||+|||+
T Consensus        97 ~~~~lv~e~~-~~~~~~l~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~  171 (318)
T 2dyl_A           97 TDVFIAMELM-GTCAEKLKKR-MQGPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGI  171 (318)
T ss_dssp             SEEEEEECCC-SEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             CcEEEEEecc-CCcHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCC
Confidence            9999999999 5566666554 35679999999999999999999998 6   899999999999999999999999999


Q ss_pred             ceec----------CCCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh
Q 048314          165 AKLL----------SDKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN  229 (274)
Q Consensus       165 ~~~~----------~~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                      +...          +++.|+|||.+.     ...++.++||||||+++|+|++|..||......   .....   .. ..
T Consensus       172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~---~~-~~  244 (318)
T 2dyl_A          172 SGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTD---FEVLT---KV-LQ  244 (318)
T ss_dssp             C--------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSH---HHHHH---HH-HH
T ss_pred             chhccCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCcc---HHHHH---HH-hc
Confidence            8543          367899999984     456788999999999999999999999643111   11100   00 11


Q ss_pred             hhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          230 RELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .....    .......+..+.+++.+||+.||.+|||+.|+++
T Consensus       245 ~~~~~----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          245 EEPPL----LPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             SCCCC----CCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             cCCCC----CCccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            10000    0111234578999999999999999999999986

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=8.5e-38  Score=291.79  Aligned_cols=241  Identities=16%  Similarity=0.113  Sum_probs=180.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEe------C
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR------G   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~   85 (274)
                      .++|.....+|.|+|  |.||++..      .++|.....   ...+.+.+|+.++++++||||+++++++..      .
T Consensus        13 ~grY~i~~~LG~G~f--G~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~   90 (676)
T 3qa8_A           13 CGPWEMKERLGTGGF--GYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPN   90 (676)
T ss_dssp             ----CCCCCCCBCSS--SBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTT
T ss_pred             CCCeEEEEEEeeCCC--eEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCC
Confidence            478899999999999  99999822      122222221   113457789999999999999999999755      6


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc---EEEec
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAE-RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT---AKISD  161 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~---~kl~d  161 (274)
                      +..++||||+++|+|.+++..... ..+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.   ++|+|
T Consensus        91 ~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~D  167 (676)
T 3qa8_A           91 DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIID  167 (676)
T ss_dssp             SSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECS
T ss_pred             CeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEcc
Confidence            778999999999999999986432 3699999999999999999999999   9999999999999986654   89999


Q ss_pred             cccceec----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh-
Q 048314          162 FGLAKLL----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR-  230 (274)
Q Consensus       162 ~g~~~~~----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-  230 (274)
                      ||.+...          +++.|+|||.+....++.++||||||+++|+|++|..||.....+.      .|........ 
T Consensus       168 FG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~------~~~~~i~~~~~  241 (676)
T 3qa8_A          168 LGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPV------QWHGKVREKSN  241 (676)
T ss_dssp             CCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHH------HSSTTCC----
T ss_pred             cccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchh------hhhhhhhcccc
Confidence            9998753          2567999999998899999999999999999999999996431100      0000000000 


Q ss_pred             ---hhhh-----------hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          231 ---ELNK-----------LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       231 ---~~~~-----------~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         ....           .-.+...+...+..+.+++.+||+.||++|||+.|+++
T Consensus       242 ~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~  297 (676)
T 3qa8_A          242 EHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPN  297 (676)
T ss_dssp             --CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCC
T ss_pred             hhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhc
Confidence               0000           00111345567889999999999999999999988653

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=2.9e-37  Score=264.63  Aligned_cols=221  Identities=14%  Similarity=0.139  Sum_probs=171.4

Q ss_pred             hhhcccc-ccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHH-hcCCCCccceEeEEEEe----CCcc
Q 048314           21 LRNFCRS-SLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIV-SRVSWTTDIEVSSVAMR----GSKP   88 (274)
Q Consensus        21 ~~~f~~~-~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~l~~~~~~----~~~~   88 (274)
                      .++|... .++|.|+|  |.||++..      .++|.+.   ....+.+|+.++ +..+||||+++++++.+    ....
T Consensus        16 ~~~y~~~~~~lg~G~~--g~V~~~~~~~~~~~vaiK~~~---~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~   90 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGIN--GKVLQIFNKRTQEKFALKMLQ---DCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL   90 (299)
T ss_dssp             GGTEEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEE---CSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccchhhcCcccccCCC--eEEEEEEEcCCCcEEEEEEec---ccHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence            3455554 78999999  99999822      1122222   245577899988 56689999999999876    6678


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEeccccc
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGLA  165 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~d~g~~  165 (274)
                      ++||||+++|+|.+++.......+++..++.++.|++.||.|||+.   +++|+||||+||+++.   ++.++|+|||++
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a  167 (299)
T 3m2w_A           91 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFA  167 (299)
T ss_dssp             EEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred             EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEeccccc
Confidence            9999999999999999986556799999999999999999999999   9999999999999998   788999999998


Q ss_pred             eecCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-ccC--
Q 048314          166 KLLSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-EVD--  242 (274)
Q Consensus       166 ~~~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--  242 (274)
                      ....           ...++.++||||||+++|+|++|..||........            ............ ..+  
T Consensus       168 ~~~~-----------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~------------~~~~~~~~~~~~~~~~~~  224 (299)
T 3m2w_A          168 KETT-----------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI------------SPGMKTRIRMGQYEFPNP  224 (299)
T ss_dssp             EECT-----------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------------------CCSCCSSCTTCCSSCHH
T ss_pred             cccc-----------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh------------hHHHHHHHhhccccCCch
Confidence            6543           34578899999999999999999999964311100            000000000000 122  


Q ss_pred             --HHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          243 --KKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       243 --~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                        ...+..+.+++.+||+.||++|||+.|+++
T Consensus       225 ~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~  256 (299)
T 3m2w_A          225 EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  256 (299)
T ss_dssp             HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence              234678999999999999999999999986

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=3.8e-38  Score=273.20  Aligned_cols=233  Identities=20%  Similarity=0.209  Sum_probs=167.0

Q ss_pred             HhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCC---CCcHHHHHH-HHhcCCCCccceEeEEEEeCCcce
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYS---PSRPLTLTS-IVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~---~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      ..++|.....+|.|+|  |.||++..      .++|.+.....   ...+..|+. +++.++||||+++++++.+.+..+
T Consensus        20 ~~~~y~~~~~lg~G~~--g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~   97 (327)
T 3aln_A           20 TAEDLKDLGEIGRGAY--GSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCW   97 (327)
T ss_dssp             CSCSEEC-CEEEECSS--EEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEE
T ss_pred             CHHHhhehheeccCCC--EEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceE
Confidence            3467888899999999  99999822      22232322211   223445655 777889999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHh---CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           90 TEAALDLPWDLAYIIFC---SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~---~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      +||||+.+ +|.+++..   .....+++..+..++.|++.||.|||+.  .+++|+||||+||+++.++.+||+|||++.
T Consensus        98 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~  174 (327)
T 3aln_A           98 ICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISG  174 (327)
T ss_dssp             EEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSSSC
T ss_pred             EEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCCce
Confidence            99999985 88888763   1346799999999999999999999984  289999999999999999999999999986


Q ss_pred             ec----------CCCCcCCCccc----ccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          167 LL----------SDKGCMAPECY----KRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       167 ~~----------~~~~~~ape~~----~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      ..          ++..|+|||.+    ....++.++||||||+++|+|++|..||.......               ...
T Consensus       175 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---------------~~~  239 (327)
T 3aln_A          175 QLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF---------------DQL  239 (327)
T ss_dssp             C------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC----------------------
T ss_pred             ecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH---------------HHH
Confidence            53          35679999998    45568899999999999999999999996431100               001


Q ss_pred             hhhhcCC------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          233 NKLVRGT------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       233 ~~~~~~~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .......      ......+..+.+++.+||+.||++|||+.|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          240 TQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK  285 (327)
T ss_dssp             CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence            1111111      112245678999999999999999999999976

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=1.8e-37  Score=264.58  Aligned_cols=214  Identities=14%  Similarity=0.100  Sum_probs=168.0

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCCCC-C----CcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSPYS-P----SRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~-~----~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|.....+|.|+|  |.||+|..      .++|.+..... .    +.+.+|+.++++++||||+++++++.+.+..++
T Consensus        31 ~~y~i~~~lg~G~~--g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l  108 (286)
T 3uqc_A           31 GRYRLLIFHGGVPP--LQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLV  108 (286)
T ss_dssp             TTEEEEEEEEBSTT--CEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             CcEEEEEEEcccCC--eEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEE
Confidence            56888999999999  99999822      12333332212 2    467899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecCC
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD  170 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~~  170 (274)
                      ||||+.+++|.+++..    .........++.|++.||.|||+.   +++||||||+||+++.++.++|++++       
T Consensus       109 v~e~~~g~~L~~~l~~----~~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~-------  174 (286)
T 3uqc_A          109 VAEWIRGGSLQEVADT----SPSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA-------  174 (286)
T ss_dssp             EEECCCEEEHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC-------
T ss_pred             EEEecCCCCHHHHHhc----CCChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc-------
Confidence            9999999999999954    235567888999999999999999   99999999999999999999998554       


Q ss_pred             CCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-----ccCHHH
Q 048314          171 KGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-----EVDKKN  245 (274)
Q Consensus       171 ~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  245 (274)
                        |++       +++.++||||||+++|+|++|+.||..........             .....+...     ..+...
T Consensus       175 --~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~  232 (286)
T 3uqc_A          175 --TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLA-------------PAERDTAGQPIEPADIDRDI  232 (286)
T ss_dssp             --CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSE-------------ECCBCTTSCBCCHHHHCTTS
T ss_pred             --ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhH-------------HHHHHhccCCCChhhcccCC
Confidence              333       36899999999999999999999997542111000             000000000     122345


Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          246 LENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       246 ~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +..+.+++.+||+.||++| |+.|+++.|
T Consensus       233 ~~~l~~li~~~l~~dP~~R-s~~el~~~L  260 (286)
T 3uqc_A          233 PFQISAVAARSVQGDGGIR-SASTLLNLM  260 (286)
T ss_dssp             CHHHHHHHHHHHCTTSSCC-CHHHHHHHH
T ss_pred             CHHHHHHHHHHcccCCccC-CHHHHHHHH
Confidence            6789999999999999999 999999865

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.3e-37  Score=291.24  Aligned_cols=218  Identities=13%  Similarity=0.137  Sum_probs=171.2

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-------HHHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEeCCc----
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-------ALMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK----   87 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-------~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----   87 (274)
                      ++|.....||.|+|  |.||++..       .++|......   ..+.+.+|+.++++++||||+++++++.+.+.    
T Consensus        80 ~~y~i~~~lg~G~~--g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~  157 (681)
T 2pzi_A           80 GQYEVKGCIAHGGL--GWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDP  157 (681)
T ss_dssp             TTEEEEEEEEEETT--EEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCE
T ss_pred             CceEEEEEEeeCCC--eEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCc
Confidence            67888899999999  99999822       1222222211   12346799999999999999999999987665    


Q ss_pred             -ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           88 -PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        88 -~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                       .++||||+++++|.+++..    .+++..++.++.|++.||.|||+.   +|+||||||+||+++.+ .+||+|||+++
T Consensus       158 ~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~  229 (681)
T 2pzi_A          158 VGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVS  229 (681)
T ss_dssp             EEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCE
T ss_pred             eeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccch
Confidence             6999999999999988753    799999999999999999999999   99999999999999886 89999999987


Q ss_pred             ec-------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC
Q 048314          167 LL-------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  239 (274)
Q Consensus       167 ~~-------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (274)
                      ..       +++.|+|||++.... +.++||||||+++|+|++|..|+.......                     +...
T Consensus       230 ~~~~~~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~---------------------~~~~  287 (681)
T 2pzi_A          230 RINSFGYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDG---------------------LPED  287 (681)
T ss_dssp             ETTCCSCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSS---------------------CCTT
T ss_pred             hcccCCccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCccccccc---------------------cccc
Confidence            54       477899999887654 889999999999999999988875321100                     0000


Q ss_pred             ccCHHHHHHHHHHHHHhhccCCCCCCChhhHH
Q 048314          240 EVDKKNLENLVKVGLWCVQDEPALRPSMKCVV  271 (274)
Q Consensus       240 ~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl  271 (274)
                      ......+..+.+++.+||+.||++||+..+.+
T Consensus       288 ~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l  319 (681)
T 2pzi_A          288 DPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEM  319 (681)
T ss_dssp             CHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHH
T ss_pred             ccccccCHHHHHHHhhhccCChhhCCCHHHHH
Confidence            01112346789999999999999999765543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=5.1e-36  Score=268.26  Aligned_cols=231  Identities=13%  Similarity=0.050  Sum_probs=167.8

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-----CCCCcHHHHHHHHhcCCC-Cccc--------
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-----YSPSRPLTLTSIVSRVSW-TTDI--------   76 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-----~~~~~~~~e~~~l~~l~h-~niv--------   76 (274)
                      +....++|...++||+|+|  |.||++..      .++|.....     ...+.+.+|+.++..++| +|..        
T Consensus        73 ~~~~~~~~~~~~~LG~G~f--G~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~  150 (413)
T 3dzo_A           73 LGERPRTLVRGTVLGQEDP--YAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRF  150 (413)
T ss_dssp             SSSCCEEEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCB
T ss_pred             CCCCceeEEEecccccCCC--EEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhccc
Confidence            3344566778899999999  99999931      122322211     235567899999999987 3211        


Q ss_pred             -e------------EeEEEEe-----CCcceEEEEeCCCCCHHHHHH-----hCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 048314           77 -E------------VSSVAMR-----GSKPSTEAALDLPWDLAYIIF-----CSAERNPYWNQRVRIALDVAKGILYLHD  133 (274)
Q Consensus        77 -~------------l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~-----~~~~~~l~~~~~~~~~~~i~~~l~~lh~  133 (274)
                       .            +..++..     ....+++|+++ +++|.+++.     ......+++..++.++.|++.||.|||+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  229 (413)
T 3dzo_A          151 IFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH  229 (413)
T ss_dssp             CCCCEEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence             1            1111111     22356777754 689999995     2233458899999999999999999999


Q ss_pred             CCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-------CCCcCCCccc----------ccCCCccccceeehhHh
Q 048314          134 ECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-------DKGCMAPECY----------KRTPISVKADVYGYGIV  196 (274)
Q Consensus       134 ~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-------~~~~~ape~~----------~~~~~~~~~Di~s~G~~  196 (274)
                      .   +|+||||||+|||++.++.+||+|||+++...       .+.|+|||++          ....++.++|||||||+
T Consensus       230 ~---~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvi  306 (413)
T 3dzo_A          230 Y---GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA  306 (413)
T ss_dssp             T---TEECSCCCGGGEEECTTCCEEECCGGGCEETTEEECCCCCTTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHH
T ss_pred             C---CcccCCcccceEEEecCCeEEEEeccceeecCCccccCCCCceeCchhhhccccccccccCcCCCchhhHHHHHHH
Confidence            9   99999999999999999999999999986432       2789999998          44567889999999999


Q ss_pred             HHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          197 LLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       197 l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      +|||++|+.||......                .....++...   ...+..+.+++.+||+.||++|||+.++++
T Consensus       307 l~elltg~~Pf~~~~~~----------------~~~~~~~~~~---~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~  363 (413)
T 3dzo_A          307 IYWIWCADLPNTDDAAL----------------GGSEWIFRSC---KNIPQPVRALLEGFLRYPKEDRLLPLQAME  363 (413)
T ss_dssp             HHHHHHSSCCCCTTGGG----------------SCSGGGGSSC---CCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHHHHCCCCCCCcchh----------------hhHHHHHhhc---ccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            99999999999643110                0111111111   123467999999999999999999998865

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=2.9e-36  Score=262.46  Aligned_cols=226  Identities=11%  Similarity=0.030  Sum_probs=169.6

Q ss_pred             hhhccccccCCCCCCCCcchhHHH----HHHHHHhcCC----------CCCCcHHHHHHHHhcCC---------CCccce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM----RALMATVNSP----------YSPSRPLTLTSIVSRVS---------WTTDIE   77 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~----~~~~~~~~~~----------~~~~~~~~e~~~l~~l~---------h~niv~   77 (274)
                      .++|...+.||+|+|  |.||++.    ..++|.+...          ...+.+.+|+.++++++         |||||+
T Consensus        19 ~~~y~~~~~lG~G~~--g~V~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~   96 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVF--GEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG   96 (336)
T ss_dssp             HHHHHTCEEEEEETT--EEEEEEEETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred             cccchheeeecccCc--eEEEEEEeCCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence            467888899999999  9999982    1222222211          11155779999999886         788887


Q ss_pred             EeEEEE------------------------------eCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 048314           78 VSSVAM------------------------------RGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKG  127 (274)
Q Consensus        78 l~~~~~------------------------------~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~  127 (274)
                      +.+.+.                              +.+..++|||||++|++.+.+..   ..+++..++.++.|++.|
T Consensus        97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~a  173 (336)
T 2vuw_A           97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTAS  173 (336)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHH
T ss_pred             hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHH
Confidence            777643                              26789999999999976666643   568999999999999999


Q ss_pred             HHHHh-cCCCCCcccCCCCCCceEEcCCC--------------------cEEEeccccceec------CCCCcCCCcccc
Q 048314          128 ILYLH-DECEPPILHCDIKPQNILMDEFW--------------------TAKISDFGLAKLL------SDKGCMAPECYK  180 (274)
Q Consensus       128 l~~lh-~~~~~~i~h~dl~~~nil~~~~~--------------------~~kl~d~g~~~~~------~~~~~~ape~~~  180 (274)
                      |.||| +.   +|+||||||+|||++.++                    .+||+|||+++..      +++.|+|||++.
T Consensus       174 L~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~  250 (336)
T 2vuw_A          174 LAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFT  250 (336)
T ss_dssp             HHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGC
T ss_pred             HHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcEEEeecccChhhhc
Confidence            99999 88   999999999999999876                    8999999999754      478899999998


Q ss_pred             cCCCccccceeehhHh-HHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh----cCCccCHHHHHHHHHHHHH
Q 048314          181 RTPISVKADVYGYGIV-LLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV----RGTEVDKKNLENLVKVGLW  255 (274)
Q Consensus       181 ~~~~~~~~Di~s~G~~-l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~li~~  255 (274)
                      +.. +.++||||++++ .+++++|..||...          .|.... .........    .....+...++++.+|+.+
T Consensus       251 g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~  318 (336)
T 2vuw_A          251 GDG-DYQFDIYRLMKKENNNRWGEYHPYSNV----------LWLHYL-TDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRT  318 (336)
T ss_dssp             CCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH----------HHHHHH-HHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHH
T ss_pred             CCC-ccceehhhhhCCCCcccccccCCCcch----------hhhhHH-HHhhhhhhccCcccchhhhhhcCHHHHHHHHH
Confidence            666 889999998766 77888999998421          111010 000010100    1112344678899999999


Q ss_pred             hhccCCCCCCChhhHH
Q 048314          256 CVQDEPALRPSMKCVV  271 (274)
Q Consensus       256 cl~~dp~~Rps~~evl  271 (274)
                      ||+.|     |++|++
T Consensus       319 ~L~~d-----sa~e~l  329 (336)
T 2vuw_A          319 MLNFS-----SATDLL  329 (336)
T ss_dssp             GGGSS-----SHHHHH
T ss_pred             HhccC-----CHHHHH
Confidence            99976     999998

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.95  E-value=2.3e-29  Score=233.27  Aligned_cols=141  Identities=12%  Similarity=0.036  Sum_probs=110.1

Q ss_pred             CcHHHHHHHHhcC-CCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 048314           58 SRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECE  136 (274)
Q Consensus        58 ~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~  136 (274)
                      ++|.+|+++|+++ .|+||+++++++.+++..||||||++|++|.+.+..  .+.++..   +++.||+.||.|+|++  
T Consensus       286 ~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~--~~~l~~~---~I~~QIl~AL~ylH~~--  358 (569)
T 4azs_A          286 YELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAA--GEEIDRE---KILGSLLRSLAALEKQ--  358 (569)
T ss_dssp             HHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHT--TCCCCHH---HHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHh--CCCCCHH---HHHHHHHHHHHHHHHC--
Confidence            4588999999999 599999999999999999999999999999999986  4567754   4789999999999999  


Q ss_pred             CCcccCCCCCCceEEcCCCcEEEeccccceecC-----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCC
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWE  205 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~  205 (274)
                       ||+||||||+|||++.++.+||+|||+++...           |+.|+|||++.+ .+..++|+||+|+.++++.++..
T Consensus       359 -GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~  436 (569)
T 4azs_A          359 -GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWS  436 (569)
T ss_dssp             -TCEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC------------------CCCCTTHH
T ss_pred             -CceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccc
Confidence             99999999999999999999999999987543           567999998875 45778999999999888776654


Q ss_pred             Cc
Q 048314          206 NM  207 (274)
Q Consensus       206 p~  207 (274)
                      ++
T Consensus       437 ~~  438 (569)
T 4azs_A          437 NW  438 (569)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.90  E-value=1.1e-25  Score=207.55  Aligned_cols=164  Identities=15%  Similarity=0.119  Sum_probs=128.3

Q ss_pred             cccCCCCCCCCcchhHH----HHHHHHH-hcCCC---------CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           27 SSLNDRNSPRSKSVWSC----MRALMAT-VNSPY---------SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~----~~~~~~~-~~~~~---------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .+++|+|+|  |.||++    ...++|. .....         ..+++.+|++++++++||||+++..++.+.+..++||
T Consensus       341 ~~~LG~G~f--g~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm  418 (540)
T 3en9_A          341 EHLIGKGAE--ADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM  418 (540)
T ss_dssp             -------CC--EEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred             CCEEeeCCC--EEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence            568999999  999966    1111111 11111         1234689999999999999997777777888889999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      ||+++++|.+++..          +..++.|++.||.|||++   +|+||||||+||+++.  .+||+|||+++...   
T Consensus       419 E~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~  483 (540)
T 3en9_A          419 SYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDE  483 (540)
T ss_dssp             ECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCCHH
T ss_pred             ECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCCcc
Confidence            99999999999964          568999999999999999   9999999999999998  99999999997654   


Q ss_pred             ---------------CCCcCCCccccc--CCCccccceeehhHhHHHHhhcCCCc
Q 048314          170 ---------------DKGCMAPECYKR--TPISVKADVYGYGIVLLETICCWENM  207 (274)
Q Consensus       170 ---------------~~~~~ape~~~~--~~~~~~~Di~s~G~~l~el~~g~~p~  207 (274)
                                     ++.|+|||++..  ..|+...|+||..+-..+.+.++.+|
T Consensus       484 ~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          484 DKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             ccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence                           567999999976  45778899999998888877777666

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.80  E-value=1.1e-21  Score=166.51  Aligned_cols=145  Identities=12%  Similarity=0.029  Sum_probs=108.7

Q ss_pred             hhHHHHhhhccccccCCCCCCCCcchhHHHH-----HHHHHhcCCC--------------------CCCcHHHHHHHHhc
Q 048314           15 SSLCTKLRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSPY--------------------SPSRPLTLTSIVSR   69 (274)
Q Consensus        15 ~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~~--------------------~~~~~~~e~~~l~~   69 (274)
                      ..+......|...+.+|.|+|  |.||+|..     .++|......                    ....+.+|+.+|++
T Consensus        83 ~~~~~~~~~~~~~~~iG~G~~--g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~  160 (282)
T 1zar_A           83 HRLVRSGKVDAIGKLMGEGKE--SAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQK  160 (282)
T ss_dssp             HHHHHTTSCSEEEEEEEECSS--EEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCeEEEecCEeccCCC--ceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHh
Confidence            344444455555689999999  99998832     1222222110                    12236799999999


Q ss_pred             CCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 048314           70 VSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  149 (274)
Q Consensus        70 l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  149 (274)
                      ++  | +++++++. .+..++||||+++|+|.+ +..        .....++.|++.||.|||+.   +++||||||+||
T Consensus       161 l~--~-~~v~~~~~-~~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NI  224 (282)
T 1zar_A          161 LQ--G-LAVPKVYA-WEGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNV  224 (282)
T ss_dssp             TT--T-SSSCCEEE-EETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSE
T ss_pred             cc--C-CCcCeEEe-ccceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHE
Confidence            98  5 66666543 366799999999999988 421        22457999999999999999   999999999999


Q ss_pred             EEcCCCcEEEeccccceecCCCCcCCCcccc
Q 048314          150 LMDEFWTAKISDFGLAKLLSDKGCMAPECYK  180 (274)
Q Consensus       150 l~~~~~~~kl~d~g~~~~~~~~~~~ape~~~  180 (274)
                      +++ ++.++|+|||++...  ..+.|||.+.
T Consensus       225 Ll~-~~~vkl~DFG~a~~~--~~~~a~e~l~  252 (282)
T 1zar_A          225 LVS-EEGIWIIDFPQSVEV--GEEGWREILE  252 (282)
T ss_dssp             EEE-TTEEEECCCTTCEET--TSTTHHHHHH
T ss_pred             EEE-CCcEEEEECCCCeEC--CCCCHHHHHH
Confidence            999 999999999999764  4568888764

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.64  E-value=1.5e-17  Score=139.14  Aligned_cols=131  Identities=12%  Similarity=-0.052  Sum_probs=97.5

Q ss_pred             hccccccCCCCCCCCcchhHHHH--------HHHHHhcCC-CCC-------------------------CcHHHHHHHHh
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCMR--------ALMATVNSP-YSP-------------------------SRPLTLTSIVS   68 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~~--------~~~~~~~~~-~~~-------------------------~~~~~e~~~l~   68 (274)
                      -+.....||.|+|  |.||+|..        .++|..... ...                         ..+.+|+.+|.
T Consensus        48 ~~~i~~~ig~G~~--g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~  125 (258)
T 1zth_A           48 ITAMGGVISTGKE--ANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLE  125 (258)
T ss_dssp             EEEEEEEEEECSS--EEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecce--EEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHH
Confidence            3455688999999  99999822        233322111 000                         14678999999


Q ss_pred             cCCCCcc--ceEeEEEEeCCcceEEEEeCCC-C----CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCcc
Q 048314           69 RVSWTTD--IEVSSVAMRGSKPSTEAALDLP-W----DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLH-DECEPPIL  140 (274)
Q Consensus        69 ~l~h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh-~~~~~~i~  140 (274)
                      +++|+|+  ++.+++    +..+|||||+.+ |    +|.++...     .++.....++.|++.+|.||| +.   +++
T Consensus       126 ~l~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~---giv  193 (258)
T 1zth_A          126 RAKEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEA---ELV  193 (258)
T ss_dssp             HHHHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTS---CEE
T ss_pred             HHHhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHC---CEE
Confidence            9998864  455543    367999999942 4    78777543     234567889999999999999 88   999


Q ss_pred             cCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          141 HCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       141 h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      ||||||.|||++.  .++|+|||++....
T Consensus       194 HrDlkp~NILl~~--~~~liDFG~a~~~~  220 (258)
T 1zth_A          194 HADLSEYNIMYID--KVYFIDMGQAVTLR  220 (258)
T ss_dssp             CSSCSTTSEEESS--SEEECCCTTCEETT
T ss_pred             eCCCCHHHEEEcC--cEEEEECcccccCC
Confidence            9999999999988  89999999987653

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.33  E-value=1.8e-14  Score=126.29  Aligned_cols=141  Identities=12%  Similarity=0.032  Sum_probs=89.9

Q ss_pred             hhhHHHHhhhccccccCCCCCCCCcchhHHH-----HHHHHHhcCC-------CCCCc---------HH--------HHH
Q 048314           14 RSSLCTKLRNFCRSSLNDRNSPRSKSVWSCM-----RALMATVNSP-------YSPSR---------PL--------TLT   64 (274)
Q Consensus        14 ~~~l~~~~~~f~~~~~~g~g~~~~g~vy~~~-----~~~~~~~~~~-------~~~~~---------~~--------~e~   64 (274)
                      ...|.....-|.....||.|++  |.||+|.     ..++|..+..       ....+         .+        .|.
T Consensus        87 L~~L~~rg~iY~I~~~IG~Gk~--a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~  164 (397)
T 4gyi_A           87 LHTHAARKDVYSVGSRIGVGKE--SDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEF  164 (397)
T ss_dssp             HHHHHHTTSCSEEEEEEEECSS--EEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEecCEeeeCCc--eEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            3444554455777889999999  9999981     1222221110       00111         11        244


Q ss_pred             HHHhcCCCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 048314           65 SIVSRVSWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDI  144 (274)
Q Consensus        65 ~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl  144 (274)
                      ..|.++.+.++.-..-+..  ...+|||||+++++|.++...        +....++.|++.+|.+||+.   +++||||
T Consensus       165 ~nL~rL~~~gv~vp~p~~~--~~~~LVME~i~G~~L~~l~~~--------~~~~~l~~qll~~l~~lH~~---gIVHrDL  231 (397)
T 4gyi_A          165 AFMKALYEEGFPVPEPIAQ--SRHTIVMSLVDALPMRQVSSV--------PDPASLYADLIALILRLAKH---GLIHGDF  231 (397)
T ss_dssp             HHHHHHHHTTCSCCCEEEE--ETTEEEEECCSCEEGGGCCCC--------SCHHHHHHHHHHHHHHHHHT---TEECSCC
T ss_pred             HHHHHHHhcCCCCCeeeec--cCceEEEEecCCccHhhhccc--------HHHHHHHHHHHHHHHHHHHC---CCcCCCC
Confidence            4555554333211111111  234799999999888655321        12356789999999999999   9999999


Q ss_pred             CCCceEEcCCC----------cEEEeccccceecC
Q 048314          145 KPQNILMDEFW----------TAKISDFGLAKLLS  169 (274)
Q Consensus       145 ~~~nil~~~~~----------~~kl~d~g~~~~~~  169 (274)
                      ||.|||++.++          .+.++||+-+....
T Consensus       232 Kp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~  266 (397)
T 4gyi_A          232 NEFNILIREEKDAEDPSSITLTPIIIXFPQMVSMD  266 (397)
T ss_dssp             STTSEEEEEEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred             CHHHEEEeCCCCcccccccccceEEEEeCCcccCC
Confidence            99999998765          38899999876544

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.03  E-value=1.4e-10  Score=96.48  Aligned_cols=141  Identities=11%  Similarity=-0.034  Sum_probs=102.9

Q ss_pred             HHHhhhccccccCCCCCCCCcchhHHH----HHHHHHhcC--CCCCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceE
Q 048314           18 CTKLRNFCRSSLNDRNSPRSKSVWSCM----RALMATVNS--PYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        18 ~~~~~~f~~~~~~g~g~~~~g~vy~~~----~~~~~~~~~--~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~l   90 (274)
                      .....+|......+.|+.  +.||+..    ..++|....  ......+.+|+.+++.+. +.++.++++++.+.+..++
T Consensus        10 ~~~l~~~~~~~~~~g~s~--~~v~~~~~~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~l   87 (263)
T 3tm0_A           10 KKLIEKYRCVKDTEGMSP--AKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNL   87 (263)
T ss_dssp             HHHHTTSEEEECCSCCSS--SEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEE
T ss_pred             HHHhccceeEeeccCCCC--CeEEEEECCCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEE
Confidence            344556766677777777  7888762    222222211  134567889999999985 6778999999999899999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----------------------------------
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC-----------------------------------  135 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~-----------------------------------  135 (274)
                      ||||++|.+|.+.+..       ......++.+++.+++.||+..                                   
T Consensus        88 v~e~i~G~~l~~~~~~-------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (263)
T 3tm0_A           88 LMSEADGVLCSEEYED-------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE  160 (263)
T ss_dssp             EEECCSSEEHHHHCCT-------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGST
T ss_pred             EEEecCCeehhhccCC-------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccc
Confidence            9999999999876421       1223467889999999999810                                   


Q ss_pred             ---------------------CCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          136 ---------------------EPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       136 ---------------------~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                                           ...++|+|+++.||+++++..+.++||+.+..
T Consensus       161 ~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          161 DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             TCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             cccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence                                 02589999999999998766667999987643

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.83  E-value=7.9e-10  Score=91.48  Aligned_cols=134  Identities=15%  Similarity=-0.022  Sum_probs=92.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----HHHHHhcCCCCCCcHHHHHHHHhcCCCCc--cceEeEEEEeCCcceEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSPYSPSRPLTLTSIVSRVSWTT--DIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e   93 (274)
                      ..++....+.+.|..  +.||++..     .++|.... .....+.+|+.+++.+.+.+  +.+++++..+.+..++|||
T Consensus        19 ~~~~~~~~~~~gg~~--~~v~~~~~~~g~~~vlK~~~~-~~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e   95 (264)
T 1nd4_A           19 LFGYDWAQQTIGCSD--AAVFRLSAQGRPVLFVKTDLS-GALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLG   95 (264)
T ss_dssp             TTTCEEEECSCTTSS--CEEEEEECTTSCCEEEEEECS-CTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEE
T ss_pred             cCCCceEecccCCCC--ceEEEEecCCCCeEEEEeCCc-ccchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEE
Confidence            344554444456666  77887631     12222222 24467889999999987544  5679998888888999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC--------------------------------------
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC--------------------------------------  135 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~--------------------------------------  135 (274)
                      |++|.+|.  ...     .+   ...++.+++..|..||+..                                      
T Consensus        96 ~i~G~~l~--~~~-----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (264)
T 1nd4_A           96 EVPGQDLL--SSH-----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGL  165 (264)
T ss_dssp             CCSSEETT--TSC-----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTC
T ss_pred             ecCCcccC--cCc-----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCc
Confidence            99998884  211     12   2356777888888888641                                      


Q ss_pred             -----------------CCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          136 -----------------EPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       136 -----------------~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                                       ...++|+|++|.||+++++..+.++||+.+..
T Consensus       166 ~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          166 APAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             CHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence                             01299999999999998876677999998643

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.67  E-value=4.4e-08  Score=85.27  Aligned_cols=137  Identities=10%  Similarity=-0.005  Sum_probs=97.0

Q ss_pred             cccCCCCCCCCcchhHHHH----HHHHHhc--CC---CCCCcHHHHHHHHhcCC--CCccceEeEEEEeC---CcceEEE
Q 048314           27 SSLNDRNSPRSKSVWSCMR----ALMATVN--SP---YSPSRPLTLTSIVSRVS--WTTDIEVSSVAMRG---SKPSTEA   92 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~----~~~~~~~--~~---~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~   92 (274)
                      ...++.|.+  +.+|+...    .+++...  ..   .....+.+|+.+++.+.  +..+++++.++.+.   +..++||
T Consensus        43 ~~~l~~G~s--n~~y~v~~~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm  120 (359)
T 3dxp_A           43 VEQFKGGQS--NPTFKLVTPGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM  120 (359)
T ss_dssp             EEECCC-CC--SCEEEEECSSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred             EEEcCCccc--ceEEEEEECCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence            445777887  78887611    1111111  10   23457789999999987  45589999998776   4589999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-------------------------------------
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC-------------------------------------  135 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~-------------------------------------  135 (274)
                      ||++|..+.+..    -..++...+..++.+++..|+.||+..                                     
T Consensus       121 e~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (359)
T 3dxp_A          121 EFVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPA  196 (359)
T ss_dssp             ECCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHH
T ss_pred             EecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChH
Confidence            999987774321    234788888999999999999999731                                     


Q ss_pred             ------------------CCCcccCCCCCCceEEcCCCc--EEEeccccceecC
Q 048314          136 ------------------EPPILHCDIKPQNILMDEFWT--AKISDFGLAKLLS  169 (274)
Q Consensus       136 ------------------~~~i~h~dl~~~nil~~~~~~--~kl~d~g~~~~~~  169 (274)
                                        ...++|+|+++.||+++.++.  +.++||+.+....
T Consensus       197 ~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g~  250 (359)
T 3dxp_A          197 MDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLGH  250 (359)
T ss_dssp             HHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEEC
T ss_pred             HHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccCC
Confidence                              136999999999999987643  6899999886543

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.39  E-value=2.8e-07  Score=78.27  Aligned_cols=175  Identities=15%  Similarity=0.118  Sum_probs=110.7

Q ss_pred             ccCCCCCCCCcchhHHHHHH-HHHhcCCCCCCcHHHHHHHHhcCC-CCc--cceEeEEEEeCC---cceEEEEeCCCCCH
Q 048314           28 SLNDRNSPRSKSVWSCMRAL-MATVNSPYSPSRPLTLTSIVSRVS-WTT--DIEVSSVAMRGS---KPSTEAALDLPWDL  100 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~~~-~~~~~~~~~~~~~~~e~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e~~~~gsL  100 (274)
                      ..++.|..  ..+|...... ++..........+.+|+.+|+.+. +..  +.+.+......+   ..++|||+++|.+|
T Consensus        26 ~~~~~G~~--n~v~~v~~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~~l  103 (304)
T 3sg8_A           26 EISGEGND--CIAYEINRDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPL  103 (304)
T ss_dssp             CEEEECSS--EEEEESTTSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCCEEC
T ss_pred             EecCCCCc--ceEEEECCEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCCeEC
Confidence            34667777  7787653111 111111112345678999998874 333  456666554333   45899999999888


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC---------------------------------------------
Q 048314          101 AYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC---------------------------------------------  135 (274)
Q Consensus       101 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~---------------------------------------------  135 (274)
                      .+....    .++...+..++.+++..++.||+..                                             
T Consensus       104 ~~~~~~----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  179 (304)
T 3sg8_A          104 TPLLLN----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRD  179 (304)
T ss_dssp             CHHHHH----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             Cccccc----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHH
Confidence            754432    4677778888888888888888621                                             


Q ss_pred             ----------CCCcccCCCCCCceEEcC--CCcEEEeccccceecCC-------CCc---CCCccccc-----CCC----
Q 048314          136 ----------EPPILHCDIKPQNILMDE--FWTAKISDFGLAKLLSD-------KGC---MAPECYKR-----TPI----  184 (274)
Q Consensus       136 ----------~~~i~h~dl~~~nil~~~--~~~~kl~d~g~~~~~~~-------~~~---~ape~~~~-----~~~----  184 (274)
                                .+.++|+|+++.||+++.  ...+.++||+.+.....       ...   ..|+....     +..    
T Consensus       180 ~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~  259 (304)
T 3sg8_A          180 ILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPT  259 (304)
T ss_dssp             HHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHH
T ss_pred             HHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHH
Confidence                      135799999999999988  55678999998765431       011   22221110     000    


Q ss_pred             -----ccccceeehhHhHHHHhhcCCCcc
Q 048314          185 -----SVKADVYGYGIVLLETICCWENME  208 (274)
Q Consensus       185 -----~~~~Di~s~G~~l~el~~g~~p~~  208 (274)
                           ..-.+.|+++.+++.+.+|..+|.
T Consensus       260 ~~~r~~~~~~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          260 VLEKYRMKEKYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence                 112468899999999999887773

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.93  E-value=3.3e-05  Score=64.02  Aligned_cols=103  Identities=11%  Similarity=-0.041  Sum_probs=76.1

Q ss_pred             cHHHHHHHHhcCC-CCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC--
Q 048314           59 RPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC--  135 (274)
Q Consensus        59 ~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~--  135 (274)
                      .+.+|..+|+.+. +--+.++++++.+.+..++|||++++.++.+.....      ......+..+++..|+-||+..  
T Consensus        65 ~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~~~~~~------~~~~~~~~~~l~~~L~~Lh~~~~~  138 (272)
T 4gkh_A           65 DVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEY------PDSGENIVDALAVFLRRLHSIPVC  138 (272)
T ss_dssp             HHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHHHHHHHC------GGGHHHHHHHHHHHHHHHHTSCGG
T ss_pred             HHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccccccccCC------HHHHHHHHHHHHHHHHHhcCCCcc
Confidence            4568999988875 323788999999999999999999998887766431      1223345566666666666431  


Q ss_pred             -----------------------------------------------------CCCcccCCCCCCceEEcCCCcEEEecc
Q 048314          136 -----------------------------------------------------EPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus       136 -----------------------------------------------------~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                                                                           ...++|+|+.+.||+++..+.+-++||
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDw  218 (272)
T 4gkh_A          139 NCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDV  218 (272)
T ss_dssp             GCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCC
T ss_pred             cCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEEC
Confidence                                                                 013789999999999998877789999


Q ss_pred             cccee
Q 048314          163 GLAKL  167 (274)
Q Consensus       163 g~~~~  167 (274)
                      +.+..
T Consensus       219 e~a~~  223 (272)
T 4gkh_A          219 GRVGI  223 (272)
T ss_dssp             TTCEE
T ss_pred             ccccc
Confidence            87643

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.86  E-value=6.1e-05  Score=63.88  Aligned_cols=106  Identities=16%  Similarity=0.068  Sum_probs=72.3

Q ss_pred             CcHHHHHHHHhcCCCC---ccceEeEEEE-eCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 048314           58 SRPLTLTSIVSRVSWT---TDIEVSSVAM-RGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD  133 (274)
Q Consensus        58 ~~~~~e~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~  133 (274)
                      ..+.+|+.+|+.+.+.   .+.+.+.++. ..+..++|||+++|.++.+....    .++......++.+++..|+.||+
T Consensus        54 ~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l~~~~~~----~l~~~~~~~~~~~lg~~La~LH~  129 (306)
T 3tdw_A           54 DELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGEDGMA----VLPDDAKDRLALQLAEFMNELSA  129 (306)
T ss_dssp             HHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEECHHHHHT----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeECchhhhh----hCCHHHHHHHHHHHHHHHHHHhc
Confidence            4567999999998753   3567777774 45668999999999887763221    23444445555555555555553


Q ss_pred             C---------------------------------------------------------CCCCcccCCCCCCceEEcC---
Q 048314          134 E---------------------------------------------------------CEPPILHCDIKPQNILMDE---  153 (274)
Q Consensus       134 ~---------------------------------------------------------~~~~i~h~dl~~~nil~~~---  153 (274)
                      .                                                         ....++|+|+.+.|++++.   
T Consensus       130 ~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~  209 (306)
T 3tdw_A          130 FPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSR  209 (306)
T ss_dssp             SCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCS
T ss_pred             CCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCC
Confidence            2                                                         1225699999999999987   


Q ss_pred             CCc-EEEecccccee
Q 048314          154 FWT-AKISDFGLAKL  167 (274)
Q Consensus       154 ~~~-~kl~d~g~~~~  167 (274)
                      ++. +.++||+.+..
T Consensus       210 ~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          210 QTPLTGIIDFGDAAI  224 (306)
T ss_dssp             SCCEEEECCCTTCEE
T ss_pred             CCceEEEEehhhcCC
Confidence            344 58999997754

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=97.66  E-value=0.00017  Score=57.59  Aligned_cols=99  Identities=8%  Similarity=-0.044  Sum_probs=65.4

Q ss_pred             CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecCCCCcCCCc
Q 048314           98 WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPE  177 (274)
Q Consensus        98 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~ape  177 (274)
                      -||.+.|.. .+.++++.++|.++.|.+.+|.-+-...  .-..+-..|..|++..+|.+.+.+ ..+. .....+.+||
T Consensus        33 vSL~eIL~~-~~~PlsEEqaWALc~Qc~~~L~~~~~~~--~~~~~i~~~~~i~l~~dG~V~f~~-~~s~-~~~~~~~~pe  107 (229)
T 2yle_A           33 LSLEEILRL-YNQPINEEQAWAVCYQCCGSLRAAARRR--QPRHRVRSAAQIRVWRDGAVTLAP-AADD-AGEPPPVAGK  107 (229)
T ss_dssp             EEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCSGGGEEEETTSCEEECC-C-------------C
T ss_pred             ccHHHHHHH-cCCCcCHHHHHHHHHHHHHHHHhhhhcc--cCCceecCCcceEEecCCceeccc-cccc-ccccCCCChh
Confidence            479999987 5688999999999999999987662210  111334456889999999987774 2211 1233466888


Q ss_pred             ccccCCCccccceeehhHhHHHHhh
Q 048314          178 CYKRTPISVKADVYGYGIVLLETIC  202 (274)
Q Consensus       178 ~~~~~~~~~~~Di~s~G~~l~el~~  202 (274)
                      ... ...+.+.-|||+|+++|..+-
T Consensus       108 ~~~-~~~te~~~IysLG~tLY~ALD  131 (229)
T 2yle_A          108 LGY-SQCMETEVIESLGIIIYKALD  131 (229)
T ss_dssp             CSS-SSSCHHHHHHHHHHHHHHHHT
T ss_pred             hcc-ccchHHHHHHHHHHHHHHHhh
Confidence            663 344677889999999998774

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.40  E-value=0.00027  Score=60.98  Aligned_cols=45  Identities=11%  Similarity=-0.113  Sum_probs=34.1

Q ss_pred             CCcHHHHHHHHhcCCC---CccceEeEEEEeC---CcceEEEEeCCCCCHH
Q 048314           57 PSRPLTLTSIVSRVSW---TTDIEVSSVAMRG---SKPSTEAALDLPWDLA  101 (274)
Q Consensus        57 ~~~~~~e~~~l~~l~h---~niv~l~~~~~~~---~~~~lv~e~~~~gsL~  101 (274)
                      ...+.+|+.+++.+..   -.+.+++.++.+.   +..++||||++|.++.
T Consensus        71 ~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~g~~~~v~e~l~G~~l~  121 (357)
T 3ats_A           71 TYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVLGTPFFLMDYVEGVVPP  121 (357)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTTSSCEEEEECCCCBCCC
T ss_pred             hhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCccCCceEEEEecCCCChh
Confidence            3567899999998863   2478889887665   4578999999886554

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=95.66  E-value=0.03  Score=47.46  Aligned_cols=109  Identities=12%  Similarity=-0.075  Sum_probs=63.1

Q ss_pred             CcHHHHHHHHhcCCCC--ccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCC---------------------C---CC
Q 048314           58 SRPLTLTSIVSRVSWT--TDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSA---------------------E---RN  111 (274)
Q Consensus        58 ~~~~~e~~~l~~l~h~--niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~---------------------~---~~  111 (274)
                      +....|+.++..+...  .+.+++.+..+.+  +++||++.+.++.+++....                     .   ..
T Consensus        57 ~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~  134 (333)
T 3csv_A           57 GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELAR  134 (333)
T ss_dssp             CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCB
T ss_pred             ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCc
Confidence            5667888888877532  3567787744333  78999998777765543210                     0   01


Q ss_pred             CCHHHHH-------HHH-------------HHHHHHHHHHh---cCCCCCcccCCCCCCceEEcCC----CcEEEecccc
Q 048314          112 PYWNQRV-------RIA-------------LDVAKGILYLH---DECEPPILHCDIKPQNILMDEF----WTAKISDFGL  164 (274)
Q Consensus       112 l~~~~~~-------~~~-------------~~i~~~l~~lh---~~~~~~i~h~dl~~~nil~~~~----~~~kl~d~g~  164 (274)
                      ++.....       .+.             ..+...+..+.   ......++|+|+.+.||+++.+    ..+.++||+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~  214 (333)
T 3csv_A          135 LDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQD  214 (333)
T ss_dssp             CCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCC
Confidence            2111110       000             01111122221   1113379999999999999874    6789999998


Q ss_pred             ceec
Q 048314          165 AKLL  168 (274)
Q Consensus       165 ~~~~  168 (274)
                      +...
T Consensus       215 a~~G  218 (333)
T 3csv_A          215 AKLG  218 (333)
T ss_dssp             CEEE
T ss_pred             cCcC
Confidence            7653

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=95.33  E-value=0.034  Score=47.10  Aligned_cols=132  Identities=9%  Similarity=-0.040  Sum_probs=78.2

Q ss_pred             ccCCCCCCCCcchhHHHH----HHHHHhcCCCCCCcHHHHHHHHhcCC---CCccceEeEEEEeCCcceEEEEeCCCCCH
Q 048314           28 SLNDRNSPRSKSVWSCMR----ALMATVNSPYSPSRPLTLTSIVSRVS---WTTDIEVSSVAMRGSKPSTEAALDLPWDL  100 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~----~~~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~gsL  100 (274)
                      .-++.|.+  ..+|+...    .++|... ......+..|...|+.+.   ...+++.+.++...+..++||||+++..+
T Consensus        42 ~~l~gG~~--n~~y~v~~~~~~~vlK~~~-~~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~~~  118 (312)
T 3jr1_A           42 EKLYSGEM--NEIWLINDEVQTVFVKINE-RSYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKSKN  118 (312)
T ss_dssp             EEECCSSS--SEEEEEESSSCEEEEEEEE-GGGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCCCC
T ss_pred             EEeCCccc--eeeeEEEECCCeEEEEeCC-cccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCCCC
Confidence            34677777  77776521    1111111 112344678988888875   25588999998888889999999988654


Q ss_pred             H--------H---HHHhCCC-CC-------------------CCHHHHH---HHH----------------HHHHHHH-H
Q 048314          101 A--------Y---IIFCSAE-RN-------------------PYWNQRV---RIA----------------LDVAKGI-L  129 (274)
Q Consensus       101 ~--------~---~l~~~~~-~~-------------------l~~~~~~---~~~----------------~~i~~~l-~  129 (274)
                      .        .   -|+.... ..                   -+|....   ++.                ..++..+ .
T Consensus       119 ~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l~~  198 (312)
T 3jr1_A          119 KQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVAD  198 (312)
T ss_dssp             CTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            2        1   2222111 10                   1454322   111                1122222 2


Q ss_pred             HHhc-CCCCCcccCCCCCCceEEcCCCcEEEeccc
Q 048314          130 YLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFG  163 (274)
Q Consensus       130 ~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g  163 (274)
                      .|.. ...+.++|+|+.+.|++++.++ +.+.|+.
T Consensus       199 ~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          199 TLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             HhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence            3421 1245799999999999999887 8889974

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=95.22  E-value=0.062  Score=46.76  Aligned_cols=30  Identities=23%  Similarity=0.322  Sum_probs=25.3

Q ss_pred             CcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      .++|+|+.+.||++..+ .+.++||..+...
T Consensus       228 ~L~HGDl~~~Nil~~~~-~~~lID~e~a~~G  257 (397)
T 2olc_A          228 TLIHGDLHTGSIFASEH-ETKVIDPEFAFYG  257 (397)
T ss_dssp             EEECSCCSGGGEEECSS-CEEECCCTTCEEE
T ss_pred             ceeeCCCCcCcEEEeCC-CeEEEeCcccccC
Confidence            79999999999999765 4889999876543

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=94.15  E-value=0.16  Score=42.22  Aligned_cols=29  Identities=28%  Similarity=0.311  Sum_probs=24.4

Q ss_pred             CcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++|+|+.+.|++ ..++.+.++||..+..
T Consensus       174 ~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          174 AACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             EEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             eeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            5899999999999 5566789999987754

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=92.90  E-value=0.15  Score=42.98  Aligned_cols=31  Identities=23%  Similarity=0.266  Sum_probs=27.1

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      ..++|+|+.+.||+++.++.+.++||+.+..
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence            4899999999999998777899999997643

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=89.82  E-value=0.36  Score=42.26  Aligned_cols=31  Identities=10%  Similarity=0.203  Sum_probs=27.2

Q ss_pred             CcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      .++|+|+++.||+++.++ +.++||+.+....
T Consensus       233 ~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~  263 (420)
T 2pyw_A          233 ALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGP  263 (420)
T ss_dssp             EEECSCCSGGGEEECSSC-EEECCCTTCEEEC
T ss_pred             eEEecCCCCCcEEEeCCC-CEEEeCcccccCc
Confidence            899999999999998776 9999999886544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.37  E-value=0.033  Score=50.11  Aligned_cols=49  Identities=6%  Similarity=-0.192  Sum_probs=32.7

Q ss_pred             cchhHHH-HHHHHHhc---CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           38 KSVWSCM-RALMATVN---SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        38 g~vy~~~-~~~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      +.+|.+. .++++...   ...+.+.|..|++++.+++|+|+|+++|||....
T Consensus       300 ~~~~~~~l~~~~~~~~~~~~~~g~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~  352 (487)
T 3oja_A          300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVI  352 (487)
T ss_dssp             SCHHHHHHHHHHHHHHCSCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             cchhhhHHHHHHHHhhhhcccccHHHHHHHHHHHhcccccchhhHHHHhcChH
Confidence            5566553 33333222   2345788999999999999999999999998755

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=87.54  E-value=0.91  Score=35.96  Aligned_cols=121  Identities=12%  Similarity=0.122  Sum_probs=78.5

Q ss_pred             HHHHHhcCCCCccceEeEEEEeCCcceEEEEeCC-CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 048314           63 LTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALDL-PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILH  141 (274)
Q Consensus        63 e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~-~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h  141 (274)
                      |+..|.. .||+++.. .+-.+.+...+.++.-+ .-++.. +     ..++...+++++..++.-..++++     -+|
T Consensus        36 el~LL~~-~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-i-----k~~~~~eKlr~l~ni~~l~~~~~~-----r~t  102 (215)
T 4ann_A           36 LMYLLEQ-HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-I-----KSFTKNEKLRYLLNIKNLEEVNRT-----RYT  102 (215)
T ss_dssp             GGGGGGS-CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-G-----GGSCHHHHHHHHHHGGGGGGGGGS-----SEE
T ss_pred             HHHHHhc-cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-H-----HhcCHHHHHHHHHHHHHHHHHhcC-----ceE
Confidence            4444433 68888866 45556666666666433 223333 2     247889999999999886655553     477


Q ss_pred             CCCCCCceEEcCCCcEEEeccccceecCCCCcCCCcccccCCCcccccee-ehhHhHHHHhhcCCCcc
Q 048314          142 CDIKPQNILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPISVKADVY-GYGIVLLETICCWENME  208 (274)
Q Consensus       142 ~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~ape~~~~~~~~~~~Di~-s~G~~l~el~~g~~p~~  208 (274)
                      --+.|+|++++.++.+++.-.|+...      ++|.     ..+ ..|.| .+=+++..+++++..|.
T Consensus       103 f~L~P~NL~f~~~~~p~i~~RGik~~------l~P~-----~~~-ee~fL~qyKAliiall~~K~~Fe  158 (215)
T 4ann_A          103 FVLAPDELFFTRDGLPIAKTRGLQNV------VDPL-----PVS-EAEFLTRYKALVICAFNEKQSFD  158 (215)
T ss_dssp             CCCSGGGEEECTTSCEEESCCEETTT------BSCC-----CCC-HHHHHHHHHHHHHHHHCTTCCHH
T ss_pred             EEEecceEEEcCCCCEEEEEccCccC------CCCC-----CCC-HHHHHHHHHHHHHHHHcCCCCHH
Confidence            88999999999999999999887433      2232     111 12222 45566777777777764

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=85.25  E-value=0.29  Score=40.94  Aligned_cols=31  Identities=19%  Similarity=0.205  Sum_probs=26.2

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .+++|+|+.+.||+++.+..+.++||+.+..
T Consensus       187 ~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          187 AGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cccCCCCCCccCEEEeCCceEEEecchhccC
Confidence            3799999999999998876668999987654

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=83.83  E-value=3.1  Score=32.98  Aligned_cols=113  Identities=11%  Similarity=0.075  Sum_probs=72.3

Q ss_pred             CCCccceEeEEEEeCCcceEEEEeCCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH-HHhcCCCCCcccCCCCCCc
Q 048314           71 SWTTDIEVSSVAMRGSKPSTEAALDLP-WDLAYIIFCSAERNPYWNQRVRIALDVAKGIL-YLHDECEPPILHCDIKPQN  148 (274)
Q Consensus        71 ~h~niv~l~~~~~~~~~~~lv~e~~~~-gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~-~lh~~~~~~i~h~dl~~~n  148 (274)
                      .||++  -..+-.+.+...+.++.-++ -++... .     .++...+++++..++.-.. +++     .-+|--+.|+|
T Consensus        48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i-~-----~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~N  114 (219)
T 4ano_A           48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAI-R-----KTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPEN  114 (219)
T ss_dssp             SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHH-H-----TSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGG
T ss_pred             cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHH-H-----hcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCce
Confidence            57877  22333566777777775433 344433 2     4788999999998887555 444     45778899999


Q ss_pred             eEEcCCCcEEEeccccceecCCCCcCCCcccccCCCcccccee-ehhHhHHHHhhcCCCcc
Q 048314          149 ILMDEFWTAKISDFGLAKLLSDKGCMAPECYKRTPISVKADVY-GYGIVLLETICCWENME  208 (274)
Q Consensus       149 il~~~~~~~kl~d~g~~~~~~~~~~~ape~~~~~~~~~~~Di~-s~G~~l~el~~g~~p~~  208 (274)
                      ++++.++.+++...|+...      ++|.-.      ...|.| .+=+++..++.++..|.
T Consensus       115 L~f~~~~~p~i~hRGi~~~------lpP~e~------~ee~fl~qyKali~all~~K~~Fe  163 (219)
T 4ano_A          115 LMFNRALEPFFLHVGVKES------LPPDEW------DDERLLREVKATVLALTEGEYRFD  163 (219)
T ss_dssp             EEECTTCCEEESCCEETTT------BSSCSC------CHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred             EEEeCCCcEEEEEcCCccc------CCCCCC------CHHHHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999997433      233211      112222 34455666666665553

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=81.14  E-value=2.1  Score=35.61  Aligned_cols=29  Identities=28%  Similarity=0.159  Sum_probs=24.8

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      ..++|+|+.+.||+++ + .+.++||+.+..
T Consensus       195 ~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          195 VLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             eeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            3689999999999998 4 889999987644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-29
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-28
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-27
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	7e-27
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-26
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-26
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-26
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-26
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	5e-26
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	8e-26
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-25
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-25
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-25
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-25
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	4e-25
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	6e-25
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-24
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	6e-24
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-23
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-23
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	6e-23
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-22
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	5e-22
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	7e-22
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	7e-22
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-21
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-21
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	7e-21
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-20
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-19
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	6e-19
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-17
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	5e-17
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-16
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-16
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-16
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	5e-16
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-15
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-15
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	3e-15
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-15
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	6e-15
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-14
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-14
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-14
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	6e-14
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-13
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	5e-13
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	6e-13
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	8e-13
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-12
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-12
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	4e-12
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	4e-12
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	9e-12
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-11
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	3e-11
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	4e-09
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	6e-09
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	8e-09
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-08
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-08
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-08

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (277), Expect = 1e-29
 Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 29/192 (15%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
            L + +     +     + + IA   A+G+ YLH      I+H D+K  NI + E  T K
Sbjct: 89  SLYHHLHIIETKFE-MIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVK 144

Query: 159 ISDFGLAKLLSDK-------------GCMAPECYK---RTPISVKADVYGYGIVLLETIC 202
           I DFGLA + S                 MAPE  +   + P S ++DVY +GIVL E + 
Sbjct: 145 IGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 204

Query: 203 CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPA 262
                      P   I         + R        ++V     + + ++   C++ +  
Sbjct: 205 --------GQLPYSNINNRDQIIFMVGRGY-LSPDLSKVRSNCPKAMKRLMAECLKKKRD 255

Query: 263 LRPSMKCVVMML 274
            RP    ++  +
Sbjct: 256 ERPLFPQILASI 267

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 1e-28
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 33/199 (16%)

Query: 109 ERNPYWNQRVRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDFG 163
                    +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I+D G
Sbjct: 94  RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 153

Query: 164 LAKLLSD---------------KGCMAPECY------KRTPISVKADVYGYGIVLLETIC 202
           LA                    K  MAPE        K      +AD+Y  G+V  E   
Sbjct: 154 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR 213

Query: 203 ---CWENMEIDASKPEEIILTNWVYKCFINRELNKLVR----GTEVDKKNLENLVKVGLW 255
                   E       +++ ++   +        + +R          + L  + K+   
Sbjct: 214 RCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRE 273

Query: 256 CVQDEPALRPSMKCVVMML 274
           C     A R +   +   L
Sbjct: 274 CWYANGAARLTALRIKKTL 292

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 1e-27
 Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 28/188 (14%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
            L   +   +      N+ + +A  +A+G+ ++    E   +H D++  NIL+ +  + K
Sbjct: 93  SLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCK 149

Query: 159 ISDFGLAKLLSDK------------GCMAPECYKRTPISVKADVYGYGIVLLETICCWEN 206
           I+DFGLA+L+ D                APE       ++K+DV+ +GI+L E +     
Sbjct: 150 IADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRI 209

Query: 207 MEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPS 266
                + PE I      Y+                     E L ++   C ++ P  RP+
Sbjct: 210 PYPGMTNPEVIQNLERGYRMVRPDNCP-------------EELYQLMRLCWKERPEDRPT 256

Query: 267 MKCVVMML 274
              +  +L
Sbjct: 257 FDYLRSVL 264

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 7e-27
 Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 28/186 (15%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
            L   +          +  ++ +LDV + + YL        +H D+  +N+L+ E   AK
Sbjct: 87  SLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAK 143

Query: 159 ISDFGLAKLLSDK--------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
           +SDFGL K  S             APE  +    S K+DV+ +GI+L E           
Sbjct: 144 VSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPY-P 202

Query: 211 ASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKN--LENLVKVGLWCVQDEPALRPSMK 268
               ++++               ++ +G ++D  +     + +V   C   + A+RPS  
Sbjct: 203 RIPLKDVV--------------PRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFL 248

Query: 269 CVVMML 274
            +   L
Sbjct: 249 QLREQL 254

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 1e-26
 Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 32/190 (16%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
            L   +     +     Q V +A  +A G+ Y+        +H D++  NIL+ E    K
Sbjct: 97  SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCK 153

Query: 159 ISDFGLAKLLSDK------------GCMAPECYKRTPISVKADVYGYGIVLLETICCWEN 206
           ++DFGLA+L+ D                APE       ++K+DV+ +GI+L E       
Sbjct: 154 VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRV 213

Query: 207 MEIDASKPEEIILTNWVYKCFINRELNKLVRG--TEVDKKNLENLVKVGLWCVQDEPALR 264
                    E+              L+++ RG       +  E+L  +   C + EP  R
Sbjct: 214 PY-PGMVNREV--------------LDQVERGYRMPCPPECPESLHDLMCQCWRKEPEER 258

Query: 265 PSMKCVVMML 274
           P+ + +   L
Sbjct: 259 PTFEYLQAFL 268

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 1e-26
 Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 30/191 (15%)

Query: 96  LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 155
           L  D A+ I  S        Q +  A DVA+G+ YL    +   +H D+  +NIL+ E +
Sbjct: 108 LETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENY 164

Query: 156 TAKISDFGLAKLLSDK----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWE 205
            AKI+DFGL++                 MA E    +  +  +DV+ YG++L E +    
Sbjct: 165 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGG 224

Query: 206 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKN--LENLVKVGLWCVQDEPAL 263
                 +  E                  KL +G  ++K     + +  +   C +++P  
Sbjct: 225 TPYCGMTCAELY---------------EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYE 269

Query: 264 RPSMKCVVMML 274
           RPS   +++ L
Sbjct: 270 RPSFAQILVSL 280

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 2e-26
 Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 31/194 (15%)

Query: 96  LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 155
           +          +   NP     +   L VAKG   +        +H D+  +N ++DE +
Sbjct: 111 MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKG---MKFLASKKFVHRDLAARNCMLDEKF 167

Query: 156 TAKISDFGLAKLLSDK---------------GCMAPECYKRTPISVKADVYGYGIVLLET 200
           T K++DFGLA+ + DK                 MA E  +    + K+DV+ +G++L E 
Sbjct: 168 TVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 227

Query: 201 ICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDE 260
           +        D +        +        R L          +   + L +V L C   +
Sbjct: 228 MTRGAPPYPDVN------TFDITVYLLQGRRL-------LQPEYCPDPLYEVMLKCWHPK 274

Query: 261 PALRPSMKCVVMML 274
             +RPS   +V  +
Sbjct: 275 AEMRPSFSELVSRI 288

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 3e-26
 Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD--- 170
                ++++ V KG+ YL ++    I+H D+KP NIL++     K+ DFG++  L D   
Sbjct: 103 EQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 160

Query: 171 ------KGCMAPECYKRTPISVKADVYGYGIVLLETIC-----CWENMEIDASKPEEIIL 219
                 +  M+PE  + T  SV++D++  G+ L+E           + +         + 
Sbjct: 161 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVE 220

Query: 220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPS 266
            +        R   + +    +D +    + ++  + V + P   PS
Sbjct: 221 GDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPS 267

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (253), Expect = 5e-26
 Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 33/176 (18%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
             +++ IA  VA G+ YL    E   +H D+  +N L+ E    KI+DFGL++ +     
Sbjct: 139 CAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY 195

Query: 172 -----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                        M PE       + ++DV+ YG+VL E            +  EE+I  
Sbjct: 196 YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA-HEEVI-- 252

Query: 221 NWVYKCFINRELNKLVRGT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
                         +  G      +     L  +   C    PA RPS   +  +L
Sbjct: 253 ------------YYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRIL 296

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 8e-26
 Identities = 32/191 (16%), Positives = 73/191 (38%), Gaps = 28/191 (14%)

Query: 96  LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 155
           +          +          + + LDV +G   +    E  ++H D+  +N L+ E  
Sbjct: 82  MEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG---MAYLEEACVIHRDLAARNCLVGENQ 138

Query: 156 TAKISDFGLAKLLSDK------------GCMAPECYKRTPISVKADVYGYGIVLLETICC 203
             K+SDFG+ + + D                +PE +  +  S K+DV+ +G+++ E    
Sbjct: 139 VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 198

Query: 204 WENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL 263
            +    + S  E +   +  ++ +  R  +              ++ ++   C ++ P  
Sbjct: 199 GKIPYENRSNSEVVEDISTGFRLYKPRLAS-------------THVYQIMNHCWKERPED 245

Query: 264 RPSMKCVVMML 274
           RP+   ++  L
Sbjct: 246 RPAFSRLLRQL 256

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-25
 Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 24/165 (14%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM-DEFWTAKISDFGLAKLLSDK- 171
                     + KG+ +LH    PPI+H D+K  NI +     + KI D GLA L     
Sbjct: 111 IKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF 169

Query: 172 --------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV 223
                     MAPE Y+        DVY +G+ +LE                E   +   
Sbjct: 170 AKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATS------------EYPYSECQ 216

Query: 224 YKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
               I R +   V+    DK  +  + ++   C++     R S+K
Sbjct: 217 NAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIK 261

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (250), Expect = 1e-25
 Identities = 42/195 (21%), Positives = 69/195 (35%), Gaps = 32/195 (16%)

Query: 96  LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 155
           +            +      Q V +   +A G+ YL D      +H D+  +NIL++   
Sbjct: 109 MENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNL 165

Query: 156 TAKISDFGLAKLLSDK----------------GCMAPECYKRTPISVKADVYGYGIVLLE 199
             K+SDFGL++ L D                    APE  +    +  +DV+ YGIV+ E
Sbjct: 166 VCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWE 225

Query: 200 TICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQD 259
            +   E    D +  + I      Y+     +                 L ++ L C Q 
Sbjct: 226 VMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCP-------------SALHQLMLDCWQK 272

Query: 260 EPALRPSMKCVVMML 274
           +   RP    +V  L
Sbjct: 273 DRNHRPKFGQIVNTL 287

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (247), Expect = 2e-25
 Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 33/187 (17%)

Query: 99  DLAYIIFCSAERNPY--WNQRVRIALDVAKGILYLHD--ECEPPILHCDIKPQNILMDEF 154
           DLA +I    +   Y      +R+   +   +   H   +    +LH D+KP N+ +D  
Sbjct: 91  DLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGK 150

Query: 155 WTAKISDFGLAKLLSDK-----------GCMAPECYKRTPISVKADVYGYGIVLLETICC 203
              K+ DFGLA++L+               M+PE   R   + K+D++  G +L E   C
Sbjct: 151 QNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYE--LC 208

Query: 204 WENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT--EVDKKNLENLVKVGLWCVQDEP 261
                  A   +E+                K+  G    +  +  + L ++    +  + 
Sbjct: 209 ALMPPFTAFSQKEL--------------AGKIREGKFRRIPYRYSDELNEIITRMLNLKD 254

Query: 262 ALRPSMK 268
             RPS++
Sbjct: 255 YHRPSVE 261

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (248), Expect = 2e-25
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 30/191 (15%)

Query: 98  WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 157
                      +      Q V +   +A G+ YL        +H D+  +NIL++     
Sbjct: 93  NGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVC 149

Query: 158 KISDFGLAKLLSDK--------------GCMAPECYKRTPISVKADVYGYGIVLLETICC 203
           K+SDFGL+++L D                  APE       +  +DV+ +GIV+ E +  
Sbjct: 150 KVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTY 209

Query: 204 WENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL 263
            E    + S  E            + + +N   R           + ++ + C Q E A 
Sbjct: 210 GERPYWELSNHE------------VMKAINDGFRL-PTPMDCPSAIYQLMMQCWQQERAR 256

Query: 264 RPSMKCVVMML 274
           RP    +V +L
Sbjct: 257 RPKFADIVSIL 267

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.0 bits (246), Expect = 4e-25
 Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 35/192 (18%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
            L   +    E  P  +    +   V+ G+ YL +      +H D+  +N+L+     AK
Sbjct: 94  PLHKFLVGKREEIP-VSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAK 149

Query: 159 ISDFGLAKLLSDK--------------GCMAPECYKRTPISVKADVYGYGIVLLETICCW 204
           ISDFGL+K L                    APEC      S ++DV+ YG+ + E +   
Sbjct: 150 ISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYG 209

Query: 205 ENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT--EVDKKNLENLVKVGLWCVQDEPA 262
           +       K  E++                + +G   E   +    L  +   C   +  
Sbjct: 210 Q-KPYKKMKGPEVM--------------AFIEQGKRMECPPECPPELYALMSDCWIYKWE 254

Query: 263 LRPSMKCVVMML 274
            RP    V   +
Sbjct: 255 DRPDFLTVEQRM 266

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (247), Expect = 6e-25
 Identities = 37/174 (21%), Positives = 60/174 (34%), Gaps = 28/174 (16%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
           +   +  A  VAKG+ +L        +H D+  +N+L+      KI DFGLA+ +     
Sbjct: 163 FEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSN 219

Query: 172 -----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                        MAPE       ++K+DV+ YGI+L E      N              
Sbjct: 220 YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANF--- 276

Query: 221 NWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
                     +L +     +      E +  +   C   +   RPS   +   L
Sbjct: 277 ---------YKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL 321

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (241), Expect = 1e-24
 Identities = 35/190 (18%), Positives = 72/190 (37%), Gaps = 33/190 (17%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
            L   +     R     Q + +  DV + + YL        LH D+  +N L+++    K
Sbjct: 85  CLLNYLREMRHRFQ-TQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVK 140

Query: 159 ISDFGLAKLLSDK------------GCMAPECYKRTPISVKADVYGYGIVLLETICCWEN 206
           +SDFGL++ + D                 PE    +  S K+D++ +G+++ E     + 
Sbjct: 141 VSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGK- 199

Query: 207 MEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNL--ENLVKVGLWCVQDEPALR 264
           M  +     E                  + +G  + + +L  E +  +   C  ++   R
Sbjct: 200 MPYERFTNSETA--------------EHIAQGLRLYRPHLASEKVYTIMYSCWHEKADER 245

Query: 265 PSMKCVVMML 274
           P+ K ++  +
Sbjct: 246 PTFKILLSNI 255

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.9 bits (238), Expect = 6e-24
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 32/190 (16%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
           +L   +     +       + +A  ++  + YL    +   +H D+  +N L+ E    K
Sbjct: 99  NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVK 155

Query: 159 ISDFGLAKLLSDK------------GCMAPECYKRTPISVKADVYGYGIVLLETICC--W 204
           ++DFGL++L++                 APE       S+K+DV+ +G++L E       
Sbjct: 156 VADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMS 215

Query: 205 ENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALR 264
               ID S+  E++  ++                 E  +   E + ++   C Q  P+ R
Sbjct: 216 PYPGIDLSQVYELLEKDYRM---------------ERPEGCPEKVYELMRACWQWNPSDR 260

Query: 265 PSMKCVVMML 274
           PS   +    
Sbjct: 261 PSFAEIHQAF 270

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (236), Expect = 1e-23
 Identities = 37/177 (20%), Positives = 61/177 (34%), Gaps = 34/177 (19%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
               + +   V+ G+ YL +      +H D+  +N+L+     AKISDFGL+K L     
Sbjct: 106 DKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN 162

Query: 172 ------------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL 219
                          APEC      S K+DV+ +G+++ E     +       K  E+  
Sbjct: 163 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP-YRGMKGSEV-- 219

Query: 220 TNWVYKCFINRELNKLVRGT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
                          L +G            +  +   C   +   RP    V + L
Sbjct: 220 ------------TAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL 264

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (235), Expect = 1e-23
 Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 31/166 (18%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
             +      ++A  + Y H      ++H DIKP+N+L+      KI+DFG +        
Sbjct: 105 EQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR 161

Query: 172 -------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKP--EEIILTNW 222
                    + PE  +      K D++  G++  E +      E +  +   + I    +
Sbjct: 162 TTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEF 221

Query: 223 VYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
            +  F+      L+                    ++  P+ RP ++
Sbjct: 222 TFPDFVTEGARDLIS-----------------RLLKHNPSQRPMLR 250

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.3 bits (231), Expect = 6e-23
 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 28/174 (16%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
               +  +  VAKG+ +L        +H D+  +NIL+      KI DFGLA+ + +   
Sbjct: 144 LEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSN 200

Query: 172 -----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                        MAPE       + ++DV+ YGI L E      +         +    
Sbjct: 201 YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKF--- 257

Query: 221 NWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
                     ++ K        +     +  +   C   +P  RP+ K +V ++
Sbjct: 258 ---------YKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI 302

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 2e-22
 Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
               +  +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+ +     
Sbjct: 133 LEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 189

Query: 172 -----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILT 220
                        MAPE       ++++DV+ +G++L E      +        EE    
Sbjct: 190 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFC-- 247

Query: 221 NWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
                    R L +  R           + +  L C   EP+ RP+   +V  L
Sbjct: 248 ---------RRLKEGTR-MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL 291

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.2 bits (223), Expect = 5e-22
 Identities = 38/184 (20%), Positives = 68/184 (36%), Gaps = 29/184 (15%)

Query: 105 FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL 164
               + +       R A+ VA+G+ YL        +H D+  +N+L+      KI DFGL
Sbjct: 101 LRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGL 157

Query: 165 AKLLSDK--------------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
            + L                    APE  K    S  +D + +G+ L E     +   I 
Sbjct: 158 MRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIG 217

Query: 211 ASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCV 270
            +  + +          I++E  +L R  +      +++  V + C   +P  RP+   +
Sbjct: 218 LNGSQILHK--------IDKEGERLPRPEDCP----QDIYNVMVQCWAHKPEDRPTFVAL 265

Query: 271 VMML 274
              L
Sbjct: 266 RDFL 269

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (224), Expect = 7e-22
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 33/185 (17%)

Query: 105 FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL 164
               + N      +   + +AKG+ YL    +  ++H D+  +N+L+      KI+DFGL
Sbjct: 101 VREHKDNIGSQYLLNWCVQIAKGMNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGL 157

Query: 165 AKLLSDK-------------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDA 211
           AKLL  +               MA E       + ++DV+ YG+ + E +  + +   D 
Sbjct: 158 AKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWE-LMTFGSKPYDG 216

Query: 212 SKPEEIILTNWVYKCFINRELNKLVRGT--EVDKKNLENLVKVGLWCVQDEPALRPSMKC 269
               EI               + L +G           ++  + + C   +   RP  + 
Sbjct: 217 IPASEIS--------------SILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRE 262

Query: 270 VVMML 274
           +++  
Sbjct: 263 LIIEF 267

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (223), Expect = 7e-22
 Identities = 39/189 (20%), Positives = 62/189 (32%), Gaps = 31/189 (16%)

Query: 96  LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 155
                   +    ER    +Q   +       + YLH   +  I+H D+K  NIL     
Sbjct: 91  CAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAGNILFTLDG 147

Query: 156 TAKISDFGLAKLLSDK-----------GCMAPEC-----YKRTPISVKADVYGYGIVLLE 199
             K++DFG++   +               MAPE       K  P   KADV+  GI L+E
Sbjct: 148 DIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIE 207

Query: 200 TICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQD 259
                         P   +    V       E   L + +     N ++ +K    C++ 
Sbjct: 208 MAE--------IEPPHHELNPMRVLLKIAKSEPPTLAQPSRWS-SNFKDFLK---KCLEK 255

Query: 260 EPALRPSMK 268
               R +  
Sbjct: 256 NVDARWTTS 264

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 90.1 bits (223), Expect = 1e-21
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 26/165 (15%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
             +   +     +G+ YLH      ++H D+K  NIL+ E    K+ DFG A +++    
Sbjct: 114 EVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANS 170

Query: 172 -----GCMAPE---CYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV 223
                  MAPE            K DV+  GI  +E       +    +      +    
Sbjct: 171 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNE 230

Query: 224 YKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
                +   ++  R          N V     C+Q  P  RP+ +
Sbjct: 231 SPALQSGHWSEYFR----------NFVD---SCLQKIPQDRPTSE 262

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 4e-21
 Identities = 41/169 (24%), Positives = 62/169 (36%), Gaps = 29/169 (17%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
                R    +  G++YLH      I H DIKP+N+L+DE    KISDFGLA +      
Sbjct: 102 EPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 158

Query: 172 -----------GCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIIL 219
                        +APE  KR    +   DV+  GIVL   +     +  D         
Sbjct: 159 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG--ELPWDQPSDSCQEY 216

Query: 220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
           ++W  K        K+             L+      + + P+ R ++ 
Sbjct: 217 SDWKEKKTYLNPWKKI-------DSAPLALLH---KILVENPSARITIP 255

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.1 bits (215), Expect = 7e-21
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 28/173 (16%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
               +  A  ++  + YL        +H DI  +N+L+      K+ DFGL++ + D   
Sbjct: 107 LASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY 163

Query: 172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                       MAPE       +  +DV+ +G+ + E +           KP + +  N
Sbjct: 164 YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV-------KPFQGVKNN 216

Query: 222 WVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
            V     N E   +             L  +   C   +P+ RP    +   L
Sbjct: 217 DVIGRIENGERLPMPPNCP------PTLYSLMTKCWAYDPSRRPRFTELKAQL 263

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (211), Expect = 3e-20
 Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 29/191 (15%)

Query: 97  PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 156
             + +Y    + E        V  A  VA+G+ YL        +H D+  +N+L+ E   
Sbjct: 117 GLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNV 173

Query: 157 AKISDFGLAKLLSDK-------------GCMAPECYKRTPISVKADVYGYGIVLLETICC 203
            KI+DFGLA+ +                  MAPE       + ++DV+ +G++L E    
Sbjct: 174 MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTL 233

Query: 204 WENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPAL 263
             +       P   +    ++K              +        L  +   C    P+ 
Sbjct: 234 GGS-------PYPGVPVEELFKLLKEGHR------MDKPSNCTNELYMMMRDCWHAVPSQ 280

Query: 264 RPSMKCVVMML 274
           RP+ K +V  L
Sbjct: 281 RPTFKQLVEDL 291

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (205), Expect = 3e-19
 Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 29/176 (16%)

Query: 112 PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK 171
           P  ++ +++A ++A G   +        +H D+  +N ++ E +T KI DFG+ + + + 
Sbjct: 130 PSLSKMIQMAGEIADG---MAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 186

Query: 172 -------------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEII 218
                          M+PE  K    +  +DV+ +G+VL E     E        P + +
Sbjct: 187 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQ-------PYQGL 239

Query: 219 LTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML 274
               V +  +   L       +      + L ++   C Q  P +RPS   ++  +
Sbjct: 240 SNEQVLRFVMEGGL------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSI 289

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 6e-19
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 30/168 (17%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
             Q   +  +  + + +LH      ++H DIK  NIL+    + K++DFG    ++ +  
Sbjct: 115 EGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS 171

Query: 174 -----------MAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI--ILT 220
                      MAPE   R     K D++  GI+ +E +   E   ++ +    +  I T
Sbjct: 172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE-MIEGEPPYLNENPLRALYLIAT 230

Query: 221 NWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
           N   +     +L+ + R          + +     C+  +   R S K
Sbjct: 231 NGTPELQNPEKLSAIFR----------DFLN---RCLDMDVEKRGSAK 265

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 77.8 bits (191), Expect = 3e-17
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 26/167 (15%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM--DEFWTAKISDFGLAKLLSDK 171
            ++ V     V KG+ ++H+      +H D+KP+NI+         K+ DFGL   L  K
Sbjct: 123 EDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK 179

Query: 172 ----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTN 221
                        APE  +  P+    D++  G++    +            P      +
Sbjct: 180 QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLS--------GLSPFGGENDD 231

Query: 222 WVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
              +   + + N          ++ ++ ++     +  +P  R ++ 
Sbjct: 232 ETLRNVKSCDWNMDDSAFSGISEDGKDFIR---KLLLADPNTRMTIH 275

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.1 bits (189), Expect = 5e-17
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 11/106 (10%)

Query: 105 FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL 164
                +          A +V    L L       I++ D+KP+NIL+D+    KI+DFG 
Sbjct: 94  LLRKSQRFPNPVAKFYAAEVC---LALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGF 150

Query: 165 AKLLSDK--------GCMAPECYKRTPISVKADVYGYGIVLLETIC 202
           AK + D           +APE     P +   D + +GI++ E + 
Sbjct: 151 AKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLA 196

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.7 bits (188), Expect = 1e-16
 Identities = 34/180 (18%), Positives = 59/180 (32%), Gaps = 29/180 (16%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
           DL Y +  S             A ++  G+ ++H+     +++ D+KP NIL+DE    +
Sbjct: 93  DLHYHL--SQHGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVR 147

Query: 159 ISDFGLAKLLSDKG----------CMAPECYKRTPISVKADVYGYGIVLLETICC-WENM 207
           ISD GLA   S K                  K       AD +  G +L + +       
Sbjct: 148 ISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFR 207

Query: 208 EIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSM 267
           +       EI          +    +            L +L++     +Q +   R   
Sbjct: 208 QHKTKDKHEIDRMTLTMAVELPDSFS----------PELRSLLE---GLLQRDVNRRLGC 254

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 1e-16
 Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 35/189 (18%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW--- 155
           +L   I    ++     +   I   + + I YLH      I H D+KP+N+L        
Sbjct: 95  ELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNA 151

Query: 156 TAKISDFGLAKLLSDK----------GCMAPECYKRTPISVKADVYGYGIVLLETICCW- 204
             K++DFG AK  +              +APE           D++  G+++   +C + 
Sbjct: 152 ILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYP 211

Query: 205 -----ENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQD 259
                  + I       I +  + +      E++          + ++ L++     ++ 
Sbjct: 212 PFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVS----------EEVKMLIR---NLLKT 258

Query: 260 EPALRPSMK 268
           EP  R ++ 
Sbjct: 259 EPTQRMTIT 267

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 75.1 bits (184), Expect = 2e-16
 Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 30/171 (17%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD--- 170
             +  +I   + + I  LH      I+H D+KP+NIL+D+    K++DFG +  L     
Sbjct: 109 EKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK 165

Query: 171 -------KGCMAPECY------KRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI 217
                     +APE               + D++  G+++   +    +      K   +
Sbjct: 166 LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAG--SPPFWHRKQMLM 223

Query: 218 ILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
                  +  ++          +     +++LV      +  +P  R + +
Sbjct: 224 ------LRMIMSGNYQFGSPEWDDYSDTVKDLVS---RFLVVQPQKRYTAE 265

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (181), Expect = 5e-16
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK------- 171
                 A+ +  L       I+H D+KP+NIL++E    +I+DFG AK+LS +       
Sbjct: 109 CTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARAN 168

Query: 172 ------GCMAPECYKRTPISVKADVYGYGIVLLETIC 202
                   ++PE          +D++  G ++ + + 
Sbjct: 169 SFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 205

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (179), Expect = 1e-15
 Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 37/184 (20%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 158
           DL Y I    + +   ++    A ++  G+ +L       I++ D+K  NIL+D+    K
Sbjct: 89  DLMYHIQSCHKFD--LSRATFYAAEIILGLQFL---HSKGIVYRDLKLDNILLDKDGHIK 143

Query: 159 ISDFGLAKLLSDK-----------GCMAPECYKRTPISVKADVYGYGIVLLETICC---W 204
           I+DFG+ K                  +APE       +   D + +G++L E +     +
Sbjct: 144 IADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPF 203

Query: 205 ENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALR 264
              + +      I + N  Y  ++ +E   L+                       EP  R
Sbjct: 204 HGQDEEELF-HSIRMDNPFYPRWLEKEAKDLLVK-----------------LFVREPEKR 245

Query: 265 PSMK 268
             ++
Sbjct: 246 LGVR 249

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 2e-15
 Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 35/166 (21%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKISDFGLAKLLSDK- 171
                     V + + +        +LH DIK +NIL+D      K+ DFG   LL D  
Sbjct: 109 EELARSFFWQVLEAVRHC---HNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV 165

Query: 172 --------GCMAPECYKRTP-ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNW 222
                       PE  +        A V+  GI+L + +C     E D    EEII    
Sbjct: 166 YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----EEIIRGQV 221

Query: 223 VYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
            ++  ++ E   L+R                 WC+   P+ RP+ +
Sbjct: 222 FFRQRVSSECQHLIR-----------------WCLALRPSDRPTFE 250

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 3e-15
 Identities = 39/201 (19%), Positives = 71/201 (35%), Gaps = 37/201 (18%)

Query: 96  LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 155
           +  DL   +    E          +   + +G+ +LH      ++H D+KPQNIL+    
Sbjct: 97  VDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSG 153

Query: 156 TAKISDFGLAKLLSDK----------GCMAPECYKRTPISVKADVYGYGIVLLE------ 199
             K++DFGLA++ S +             APE   ++  +   D++  G +  E      
Sbjct: 154 QIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKP 213

Query: 200 ------------TICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLE 247
                        I     +  +   P ++ L    +     + + K V   +   K+L 
Sbjct: 214 LFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLL 273

Query: 248 NLVKVGLWCVQDEPALRPSMK 268
                   C+   PA R S  
Sbjct: 274 L------KCLTFNPAKRISAY 288

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 3e-15
 Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 28/200 (14%)

Query: 94  LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 153
            D       +I          +      L   +G+ YLH      ILH D+KP N+L+DE
Sbjct: 79  FDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDE 135

Query: 154 FWTAKISDFGLAKLLSD-----------KGCMAPECYKR-TPISVKADVYGYGIVLLETI 201
               K++DFGLAK               +   APE         V  D++  G +L E +
Sbjct: 136 NGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELL 195

Query: 202 C-------------CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLEN 248
                              E   +  EE          ++  +    +    +     ++
Sbjct: 196 LRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDD 255

Query: 249 LVKVGLWCVQDEPALRPSMK 268
           L+ +        P  R +  
Sbjct: 256 LLDLIQGLFLFNPCARITAT 275

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 71.0 bits (173), Expect = 6e-15
 Identities = 28/204 (13%), Positives = 54/204 (26%), Gaps = 33/204 (16%)

Query: 94  LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 153
           +DL       +     R          A  +   +  +H   E  +++ DIKP N L+  
Sbjct: 80  IDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGR 136

Query: 154 FWT-----AKISDFGLAKLLSDKGC------------------MAPECYKRTPISVKADV 190
             +       + DFG+ K   D                     M+   +     S + D+
Sbjct: 137 PNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDL 196

Query: 191 YGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLV 250
              G V +  +      +              + +   +  L +L  G        E   
Sbjct: 197 EALGHVFMYFLRGSLPWQ-GLKAATNKQKYERIGEKKQSTPLRELCAGFP------EEFY 249

Query: 251 KVGLWCVQDEPALRPSMKCVVMML 274
           K   +         P    +  + 
Sbjct: 250 KYMHYARNLAFDATPDYDYLQGLF 273

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.3 bits (171), Expect = 1e-14
 Identities = 30/192 (15%), Positives = 57/192 (29%), Gaps = 31/192 (16%)

Query: 104 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKIS 160
           +F    R       + +A  +   I Y+H +     +H D+KP N LM    +     I 
Sbjct: 92  LFNFCSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYII 148

Query: 161 DFGLAKLLSDKGC------------------MAPECYKRTPISVKADVYGYGIVLLETIC 202
           DFGLAK   D                      +   +     S + D+   G VL+    
Sbjct: 149 DFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNL 208

Query: 203 CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPA 262
                +   +  +         +  ++  +  L +G           +    +C      
Sbjct: 209 GSLPWQGLKAATKRQKYERI-SEKKMSTPIEVLCKGYP---SEFATYLN---FCRSLRFD 261

Query: 263 LRPSMKCVVMML 274
            +P    +  + 
Sbjct: 262 DKPDYSYLRQLF 273

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 1e-14
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 29/199 (14%)

Query: 96  LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 155
           L  DL   +  SA               + +G+ + H      +LH D+KPQN+L++   
Sbjct: 83  LHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEG 139

Query: 156 TAKISDFGLAKLLSDKG-----------CMAPECYKRTP-ISVKADVYGYGIVLLETICC 203
             K++DFGLA+                   APE        S   D++  G +  E +  
Sbjct: 140 AIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTR 199

Query: 204 ------------WENMEIDASKPEEIILTNWVYKCFINRELNKLVRG--TEVDKKNLENL 249
                          +      P+E++               K  R   ++V     E+ 
Sbjct: 200 RALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDG 259

Query: 250 VKVGLWCVQDEPALRPSMK 268
             +    +  +P  R S K
Sbjct: 260 RSLLSQMLHYDPNKRISAK 278

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 70.5 bits (172), Expect = 1e-14
 Identities = 33/170 (19%), Positives = 65/170 (38%), Gaps = 32/170 (18%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF--WTAKISDFGLAKLLSDK 171
             + +       +G+ ++H   E  I+H DIKP+NI+ +     + KI DFGLA  L+  
Sbjct: 126 EAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD 182

Query: 172 G----------CMAPECYKRTPISVKADVYGYGIVLLETICC---WENMEIDASKPEEII 218
                        APE   R P+    D++  G++    +     +   + D    + + 
Sbjct: 183 EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED-DLETLQNVK 241

Query: 219 LTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
             +W +       ++             ++ +K     +Q EP  R ++ 
Sbjct: 242 RCDWEFDEDAFSSVS----------PEAKDFIK---NLLQKEPRKRLTVH 278

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (166), Expect = 6e-14
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 27/182 (14%)

Query: 99  DLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD--EFWT 156
           D+   I  SA       + V     V + + +LH      I H DI+P+NI+       T
Sbjct: 87  DIFERINTSAFELN-EREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSST 142

Query: 157 AKISDFGLAKLLSDK----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWEN 206
            KI +FG A+ L                APE ++   +S   D++  G ++   +     
Sbjct: 143 IKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSG--I 200

Query: 207 MEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPS 266
               A   ++II      +   + E  K +           + V      +  E   R +
Sbjct: 201 NPFLAETNQQIIENIMNAEYTFDEEAFKEI------SIEAMDFVD---RLLVKERKSRMT 251

Query: 267 MK 268
             
Sbjct: 252 AS 253

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 66.7 bits (162), Expect = 1e-13
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 28/167 (16%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
             + + +  D  + + +     +  I+H D+KP NI++      K+ DFG+A+ ++D   
Sbjct: 110 PKRAIEVIADACQALNFS---HQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGN 166

Query: 172 ------------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIIL 219
                         ++PE  +   +  ++DVY  G VL E +            P  +  
Sbjct: 167 SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTG--EPPFTGDSPVSVAY 224

Query: 220 TNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPS 266
            +           ++ +        +L+ +V      +   P  R  
Sbjct: 225 QHVREDPIPPSARHEGL------SADLDAVVL---KALAKNPENRYQ 262

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 5e-13
 Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 34/186 (18%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSD--- 170
            +        + +G+ Y+H      +LH D+KP N+L++     KI DFGLA++      
Sbjct: 108 NDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHD 164

Query: 171 -----------KGCMAPEC-YKRTPISVKADVYGYGIVLLETIC-----CWENMEIDASK 213
                      +   APE        +   D++  G +L E +        ++     + 
Sbjct: 165 HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNH 224

Query: 214 PEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVG-----------LWCVQDEPA 262
              I+ +           L        +  KN     ++               +   P 
Sbjct: 225 ILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPH 284

Query: 263 LRPSMK 268
            R  ++
Sbjct: 285 KRIEVE 290

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 6e-13
 Identities = 33/181 (18%), Positives = 56/181 (30%), Gaps = 29/181 (16%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI-LMDEFWTAKISDFGLAKLLSDKG 172
                     + + + Y+H      I H DIKPQN+ L  +    K+ DFG AK L    
Sbjct: 121 VIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 177

Query: 173 -----------CMAPECYKRTPISVKADVYGYGIVLLETIC-------------CWENME 208
                            +  T  +   DV+  G VL E +                E ++
Sbjct: 178 PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237

Query: 209 IDASKPEEIILT-NWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSM 267
           +  +   E I   N  Y  F   ++           +     + +    ++  P  R + 
Sbjct: 238 VLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTP 297

Query: 268 K 268
            
Sbjct: 298 L 298

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 8e-13
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 11/105 (10%)

Query: 110 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS 169
                    R     A+ +  L       +++ DIK +N+++D+    KI+DFGL K   
Sbjct: 97  SRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGI 156

Query: 170 DKG-----------CMAPECYKRTPISVKADVYGYGIVLLETICC 203
             G            +APE  +        D +G G+V+ E +C 
Sbjct: 157 SDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG 201

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.3 bits (156), Expect = 1e-12
 Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 21/165 (12%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
                R+   V   + YLHD                 +DE     ISDFGL+K+      
Sbjct: 106 ERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSV 165

Query: 172 --------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWV 223
                   G +APE   + P S   D +  G++    +C           P        +
Sbjct: 166 LSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLC--------GYPPFYDENDAKL 217

Query: 224 YKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
           ++  +  E        +    + ++ ++     ++ +P  R + +
Sbjct: 218 FEQILKAEYEFDSPYWDDISDSAKDFIR---HLMEKDPEKRFTCE 259

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 3e-12
 Identities = 29/198 (14%), Positives = 55/198 (27%), Gaps = 30/198 (15%)

Query: 98  WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 157
                  F S   +            + KG+ + H      +LH D+KPQN+L++     
Sbjct: 84  DQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGEL 140

Query: 158 KISDFGLAKLLSDKG------------CMAPECYKRTPISVKADVYGYGIVLLETICC-- 203
           K+++FGLA+                        +     S   D++  G +  E      
Sbjct: 141 KLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGR 200

Query: 204 ------------WENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVK 251
                            +  +  EE   +      +    +             L    +
Sbjct: 201 PLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGR 260

Query: 252 VGL-WCVQDEPALRPSMK 268
             L   ++  P  R S +
Sbjct: 261 DLLQNLLKCNPVQRISAE 278

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 4e-12
 Identities = 29/178 (16%), Positives = 67/178 (37%), Gaps = 28/178 (15%)

Query: 105 FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA----KIS 160
           F + + +    +       +  G   ++      I H D+KP+NI++ +        KI 
Sbjct: 103 FLAEKESLTEEEATEFLKQILNG---VYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKII 159

Query: 161 DFGLAKLLSDK----------GCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEID 210
           DFGLA  +               +APE     P+ ++AD++  G++    +    +  + 
Sbjct: 160 DFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYI-LLSGASPFLG 218

Query: 211 ASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMK 268
            +K E +   + V   F +   +             ++ ++     +  +P  R +++
Sbjct: 219 DTKQETLANVSAVNYEFEDEYFSNT-------SALAKDFIR---RLLVKDPKKRMTIQ 266

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.3 bits (153), Expect = 4e-12
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDKGC 173
                  A  +     YLH      +++ D+KP+N+L+D+    +++DFG AK +  +  
Sbjct: 140 EPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW 196

Query: 174 --------MAPECYKRTPISVKADVYGYGIVLLETIC 202
                   +APE       +   D +  G+++ E   
Sbjct: 197 TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAA 233

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 61.8 bits (149), Expect = 9e-12
 Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 29/201 (14%)

Query: 94  LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 153
            +        +    E            L +  GI Y H   +  +LH D+KPQN+L++ 
Sbjct: 79  FEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINR 135

Query: 154 FWTAKISDFGLAKLLSDKGC-----------MAPECYKRT-PISVKADVYGYGIVLLETI 201
               KI+DFGLA+                   AP+    +   S   D++  G +  E +
Sbjct: 136 EGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMV 195

Query: 202 C-------------CWENMEIDASKPEEIILT-NWVYKCFINRELNKLVRGTEVDKKNLE 247
                               I  +   +       + K   N  + + +      K   E
Sbjct: 196 NGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDE 255

Query: 248 NLVKVGLWCVQDEPALRPSMK 268
           + + +    ++ +P  R + K
Sbjct: 256 SGIDLLSKMLKLDPNQRITAK 276

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 1e-11
 Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 36/198 (18%)

Query: 104 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG 163
           +  +       ++  R+   +  G   L+      ILH D+K  N+L+      K++DFG
Sbjct: 106 LLSNVLVKFTLSEIKRVMQMLLNG---LYYIHRNKILHRDMKAANVLITRDGVLKLADFG 162

Query: 164 LAKLLSDKGC----------------MAPECYKRTPISVKADVYGYGIVLLETIC----- 202
           LA+  S                                   D++G G ++ E        
Sbjct: 163 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM 222

Query: 203 --------CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGL 254
                        ++  S   E+      Y+ +   EL K  +    D+          L
Sbjct: 223 QGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYAL 282

Query: 255 ----WCVQDEPALRPSMK 268
                 +  +PA R    
Sbjct: 283 DLIDKLLVLDPAQRIDSD 300

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 3e-11
 Identities = 33/183 (18%), Positives = 59/183 (32%), Gaps = 34/183 (18%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK-- 171
            ++   +   + KG+ Y+H        H D+KP N+ ++E    KI DFGLA+    +  
Sbjct: 120 EDRIQFLVYQMLKGLRYIHAAGII---HRDLKPGNLAVNEDCELKILDFGLARQADSEMT 176

Query: 172 ------GCMAPECY-KRTPISVKADVYGYGIVLLETIC-------------CWENMEIDA 211
                    APE        +   D++  G ++ E I                E M++  
Sbjct: 177 GYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTG 236

Query: 212 SKPEEII------LTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRP 265
           + P E +            K     E                NL++     +  +   R 
Sbjct: 237 TPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLE---KMLVLDAEQRV 293

Query: 266 SMK 268
           +  
Sbjct: 294 TAG 296

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (129), Expect = 4e-09
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 16/119 (13%)

Query: 98  WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---- 153
            +L  +I     R        +I+  +  G+ Y+H      I+H DIKP+N+LM+     
Sbjct: 108 ENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMH--RRCGIIHTDIKPENVLMEIVDSP 165

Query: 154 --FWTAKISDFGLAKLLSDKGC--------MAPECYKRTPISVKADVYGYGIVLLETIC 202
                 KI+D G A    +            +PE     P    AD++    ++ E I 
Sbjct: 166 ENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELIT 224

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 6e-09
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 13/104 (12%)

Query: 109 ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
           +      +   +   +  GI +LH      I+H D+KP NI++    T KI DFGLA+  
Sbjct: 113 QMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTA 169

Query: 169 SDK----------GCMAPECYKRTPISVKADVYGYGIVLLETIC 202
                           APE           D++  G ++ E + 
Sbjct: 170 GTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVR 213

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 52.1 bits (124), Expect = 8e-09
 Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 6/84 (7%)

Query: 105 FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL 164
                          +   + + +   +      I+H D+   N+L+ E     I DF  
Sbjct: 93  DAKELYRVRVENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVSE-EGIWIIDFPQ 148

Query: 165 AKLLSDKGCMAPECYKRTPISVKA 188
           +  + ++     E  +R   ++  
Sbjct: 149 SVEVGEE--GWREILERDVRNIIT 170

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 1e-08
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 12/103 (11%)

Query: 109 ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL 168
            +    +    +   + +G+ Y+H      I+H D+KP N+ ++E    KI DFGLA+  
Sbjct: 115 CQKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHT 171

Query: 169 SDK--------GCMAPECY-KRTPISVKADVYGYGIVLLETIC 202
            D+           APE        +   D++  G ++ E + 
Sbjct: 172 DDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT 214

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 2e-08
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 114 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKISDFGLAKLLSDK- 171
                    ++ K + Y H      I+H D+KP N+++D E    ++ D+GLA+      
Sbjct: 128 DYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ 184

Query: 172 ---------GCMAPECYKRTP-ISVKADVYGYGIVLLETIC 202
                        PE            D++  G +L   I 
Sbjct: 185 EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF 225

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 119 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLSDK------- 171
            + + V + +L L    +  I++ DIK +NIL+D      ++DFGL+K            
Sbjct: 130 EVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYD 189

Query: 172 -----GCMAPECY--KRTPISVKADVYGYGIVLLETIC 202
                  MAP+      +      D +  G+++ E + 
Sbjct: 190 FCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLT 227

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.72
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.8
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.04
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	94.89
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	89.79
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	88.0

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-54  Score=369.10  Aligned_cols=243  Identities=21%  Similarity=0.212  Sum_probs=192.5

Q ss_pred             hhhhhHHHHhhhccc---------cccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcC
Q 048314           12 IARSSLCTKLRNFCR---------SSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRV   70 (274)
Q Consensus        12 ~~~~~l~~~~~~f~~---------~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l   70 (274)
                      ++++++..++++|..         .++||+|+|  |.||+|..         .++|.....   ...++|.+|+++|+++
T Consensus         7 ~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~f--g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l   84 (299)
T d1jpaa_           7 FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEF--GEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF   84 (299)
T ss_dssp             GGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSS--SEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHhhhchhhChhhcEEeeEEeeCCC--eEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhC
Confidence            567777777777754         468999999  99999921         112222221   1234688999999999


Q ss_pred             CCCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceE
Q 048314           71 SWTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNIL  150 (274)
Q Consensus        71 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil  150 (274)
                      +|||||+++|+|.+++..++|||||++|+|.+++.. ..+.++|..+..++.|++.||.|||++   +++||||||+|||
T Consensus        85 ~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~-~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHrDlKp~NIL  160 (299)
T d1jpaa_          85 DHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQ-NDGQFTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNIL  160 (299)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEE
T ss_pred             CCCCCccEEEEEeeCCEEEEEEEecCCCcceeeecc-ccCCCCHHHHHHHHHHHHHHHHHHhhC---CCccCccccceEE
Confidence            999999999999999999999999999999999886 456799999999999999999999999   9999999999999


Q ss_pred             EcCCCcEEEeccccceecC----------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCC
Q 048314          151 MDEFWTAKISDFGLAKLLS----------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASK  213 (274)
Q Consensus       151 ~~~~~~~kl~d~g~~~~~~----------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~  213 (274)
                      ++.++.+||+|||+++...                ++.|+|||.+....++.++|||||||++|||++ |..||....  
T Consensus       161 l~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~--  238 (299)
T d1jpaa_         161 VNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMT--  238 (299)
T ss_dssp             ECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--
T ss_pred             ECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCC--
Confidence            9999999999999987532                456999999999999999999999999999998 899986431  


Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          214 PEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       . ..+..    ....+     . ..+.+..++..+.+++.+||+.||++|||+.||++.|
T Consensus       239 -~-~~~~~----~i~~~-----~-~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L  287 (299)
T d1jpaa_         239 -N-QDVIN----AIEQD-----Y-RLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTL  287 (299)
T ss_dssp             -H-HHHHH----HHHTT-----C-CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             -H-HHHHH----HHHcC-----C-CCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence             1 11111    11111     0 1134556778899999999999999999999998764

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-53  Score=359.66  Aligned_cols=236  Identities=16%  Similarity=0.170  Sum_probs=194.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-------HHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-------RALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .++|...+.||+|+|  |.||+|.       +|+|....+....++|.+|+++|++++|||||+++|+|.+++..++|||
T Consensus        16 ~~~~~~~~~iG~G~f--g~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E   93 (287)
T d1opja_          16 RTDITMKHKLGGGQY--GEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   93 (287)
T ss_dssp             GGGEEEEEETTTTTT--SSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             HHHeEEeeEEeeCCC--eEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEee
Confidence            457777888999999  9999991       2223222333455678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      ||++|+|.+++.......+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++...    
T Consensus        94 ~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~  170 (287)
T d1opja_          94 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY  170 (287)
T ss_dssp             CCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSS
T ss_pred             cccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHC---CcccCccccCeEEECCCCcEEEccccceeecCCCCc
Confidence            99999999999876667899999999999999999999999   99999999999999999999999999997543    


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                              +..|+|||++....++.++|||||||++|||++|..|+...... .  .+.    .....+     . ..+.
T Consensus       171 ~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~-~--~~~----~~i~~~-----~-~~~~  237 (287)
T d1opja_         171 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-S--QVY----ELLEKD-----Y-RMER  237 (287)
T ss_dssp             EEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCH-H--HHH----HHHHTT-----C-CCCC
T ss_pred             eeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchH-H--HHH----HHHhcC-----C-CCCC
Confidence                    45699999999999999999999999999999987776533111 1  111    111111     1 1135


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +...++.+.+|+.+||+.||++|||++||++.|
T Consensus       238 ~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L  270 (287)
T d1opja_         238 PEGCPEKVYELMRACWQWNPSDRPSFAEIHQAF  270 (287)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CccchHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            556778899999999999999999999998754

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-53  Score=354.28  Aligned_cols=234  Identities=15%  Similarity=0.172  Sum_probs=186.7

Q ss_pred             hhccccccCCCCCCCCcchhHH------HHHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC------MRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~------~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      .+|...+.||+|+|  |.||+|      .+++|+........++|.+|++++++++|||||+++|+|.+++..++|||||
T Consensus         5 ~~~~~~~~iG~G~f--g~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~   82 (263)
T d1sm2a_           5 SELTFVQEIGSGQF--GLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM   82 (263)
T ss_dssp             SCEEEEEEEECCSS--CCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             HHcEEEEEEeeCCC--eEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEec
Confidence            35666788999999  999998      2222322223345567899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++...      
T Consensus        83 ~~g~L~~~l~~-~~~~~~~~~~~~i~~qia~gl~~lH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~  158 (263)
T d1sm2a_          83 EHGCLSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTS  158 (263)
T ss_dssp             TTCBHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCTTCSGGGEEECGGGCEEECSCC------------
T ss_pred             CCCcHHHHhhc-cccCCCHHHHHHHHHHHHHHHHhhhcc---ceeecccchhheeecCCCCeEecccchheeccCCCcee
Confidence            99999999976 456799999999999999999999999   99999999999999999999999999986532      


Q ss_pred             ------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCH
Q 048314          170 ------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDK  243 (274)
Q Consensus       170 ------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (274)
                            +..|+|||.+....++.++|||||||++|||+++..|+......   ..+..    ....+     . ....|.
T Consensus       159 ~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~---~~~~~----~i~~~-----~-~~~~p~  225 (263)
T d1sm2a_         159 STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN---SEVVE----DISTG-----F-RLYKPR  225 (263)
T ss_dssp             ------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCH---HHHHH----HHHHT-----C-CCCCCT
T ss_pred             ecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCH---HHHHH----HHHhc-----C-CCCCcc
Confidence                  46799999999999999999999999999999965554332111   11111    11111     0 112445


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          244 KNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       244 ~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .+++++.+++.+||+.||++|||++||++.|
T Consensus       226 ~~~~~l~~li~~cl~~~p~~Rps~~~il~~L  256 (263)
T d1sm2a_         226 LASTHVYQIMNHCWKERPEDRPAFSRLLRQL  256 (263)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHccCCHhHCcCHHHHHHHH
Confidence            6678899999999999999999999999875

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-52  Score=354.14  Aligned_cols=236  Identities=19%  Similarity=0.217  Sum_probs=187.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHH---HHHHHHhcC----CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM---RALMATVNS----PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~---~~~~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .++|...+.||+|+|  |.||+|.   ..++|.+..    ....+.|.+|+.+|++++|||||+++|++.+ +..++|||
T Consensus         7 ~~~~~~~~~lG~G~f--g~Vy~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~E   83 (276)
T d1uwha_           7 DGQITVGQRIGSGSF--GTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQ   83 (276)
T ss_dssp             TTCCCCCSEEEECSS--CEEEEEESSSEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             cccEEEEEEEeeCCC--cEEEEEEECCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEEe
Confidence            356777888999999  9999992   112222221    1223567799999999999999999998754 56899999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-----  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-----  168 (274)
                      ||++|+|.+++.. .+..+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++..     
T Consensus        84 y~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~gl~yLH~~---~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~  159 (276)
T d1uwha_          84 WCEGSSLYHHLHI-IETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSG  159 (276)
T ss_dssp             CCCEEEHHHHHHT-SCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTSSEEECCCCCSCC------
T ss_pred             cCCCCCHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHhcC---CEeccccCHHHEEEcCCCCEEEccccceeeccccCC
Confidence            9999999999976 446799999999999999999999999   9999999999999999999999999998643     


Q ss_pred             --------CCCCcCCCccccc---CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 --------SDKGCMAPECYKR---TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 --------~~~~~~ape~~~~---~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                              +++.|+|||++..   ..++.++|||||||++|||++|+.||..... ...  +.    .....+    ...
T Consensus       160 ~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~-~~~--~~----~~~~~~----~~~  228 (276)
T d1uwha_         160 SHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINN-RDQ--II----FMVGRG----YLS  228 (276)
T ss_dssp             ------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-HHH--HH----HHHHHT----SCC
T ss_pred             cccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCCh-HHH--HH----HHHhcC----CCC
Confidence                    2667999999864   3578999999999999999999999964311 111  11    111111    111


Q ss_pred             CC--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          238 GT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       238 ~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      +.  ..+..+++.+.+++.+||+.||++|||++||++.|
T Consensus       229 p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~L  267 (276)
T d1uwha_         229 PDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASI  267 (276)
T ss_dssp             CCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CcchhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            11  24556678899999999999999999999998764

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-52  Score=347.86  Aligned_cols=228  Identities=16%  Similarity=0.150  Sum_probs=190.7

Q ss_pred             hhccccccCCCCCCCCcchhHH-------HHHHH----HHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC-------MRALM----ATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~-------~~~~~----~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.||+|+|  |.||++       .+++|    .........+.+.+|++++++++|||||++++++.+++..++
T Consensus         6 ~dy~i~~~iG~G~f--g~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i   83 (263)
T d2j4za1           6 EDFEIGRPLGKGKF--GNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   83 (263)
T ss_dssp             GGEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             hHeEEEEEEecCCC--cEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEE
Confidence            57888889999999  999998       11111    112223345567899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      |||||++|+|.+++..  .+.+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||++.... 
T Consensus        84 vmEy~~~g~L~~~l~~--~~~l~e~~~~~i~~qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~  158 (263)
T d2j4za1          84 ILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPS  158 (263)
T ss_dssp             EEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCSCSCCCC
T ss_pred             EEeecCCCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeeeeccccceecCCCCEeecccceeeecCC
Confidence            9999999999999986  45799999999999999999999999   99999999999999999999999999987543 


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCC-c
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-E  240 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  240 (274)
                              |+.|+|||++.+..++.++|||||||++|||++|+.||...   .... +.    .        .+.... .
T Consensus       159 ~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~---~~~~-~~----~--------~i~~~~~~  222 (263)
T d2j4za1         159 SRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN---TYQE-TY----K--------RISRVEFT  222 (263)
T ss_dssp             CCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS---SHHH-HH----H--------HHHTTCCC
T ss_pred             CcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCC---CHHH-HH----H--------HHHcCCCC
Confidence                    67899999999989999999999999999999999999643   1111 10    1        111111 2


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .|...++++.+++.+||+.||++|||++|+++
T Consensus       223 ~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         223 FPDFVTEGARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCccCCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence            45556788999999999999999999999986

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-52  Score=352.12  Aligned_cols=235  Identities=18%  Similarity=0.260  Sum_probs=188.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-----HHHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-----RALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-----~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      .++|...+.||+|+|  |.||+|.     .+++|.+. .....+.|.+|+++|++++|||||+++|++.+ +..++||||
T Consensus        12 ~~~~~~~~~iG~G~f--g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~Ey   88 (272)
T d1qpca_          12 RETLKLVERLGAGQF--GEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEY   88 (272)
T ss_dssp             GGGEEEEEEEEEETT--EEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred             HHHeEEeEEEecCCC--cEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCeEEEEEe
Confidence            356777888999999  9999991     12223332 23445678999999999999999999998754 567999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      |++|+|.+++.......++|..++.++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++...     
T Consensus        89 ~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~---~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~  165 (272)
T d1qpca_          89 MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT  165 (272)
T ss_dssp             CTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEE
T ss_pred             CCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccchhheeeecccceeeccccceEEccCCccc
Confidence            9999999988764445699999999999999999999999   99999999999999999999999999997643     


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                             ++.|+|||++....++.++|||||||++|||++|..|+......   ..+..    ...     ...+ ...|
T Consensus       166 ~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~---~~~~~----~i~-----~~~~-~~~p  232 (272)
T d1qpca_         166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN---PEVIQ----NLE-----RGYR-MVRP  232 (272)
T ss_dssp             CCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH---HHHHH----HHH-----TTCC-CCCC
T ss_pred             cccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCH---HHHHH----HHH-----hcCC-CCCc
Confidence                   45799999999889999999999999999999976665433111   11111    111     1111 1245


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...++++.+|+.+||+.||++|||++||+++|
T Consensus       233 ~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L  264 (272)
T d1qpca_         233 DNCPEELYQLMRLCWKERPEDRPTFDYLRSVL  264 (272)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ccChHHHHHHHHHHcCCCHhHCcCHHHHHHHh
Confidence            56678899999999999999999999998764

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-52  Score=355.58  Aligned_cols=233  Identities=18%  Similarity=0.188  Sum_probs=188.1

Q ss_pred             hhhcccccc-CCCCCCCCcchhHHHH--------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           21 LRNFCRSSL-NDRNSPRSKSVWSCMR--------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~~~-~g~g~~~~g~vy~~~~--------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      .+++....+ ||+|+|  |.||+|..        +++|.+...   ...++|.+|+++|++++|||||+++|+|.+ +..
T Consensus         7 ~~~~~~~~~~iG~G~f--g~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~   83 (285)
T d1u59a_           7 RDNLLIADIELGCGNF--GSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EAL   83 (285)
T ss_dssp             GGGEEEEEEEEECCTT--EEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSE
T ss_pred             ccCeEECCcEEecccC--eEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeE
Confidence            455665665 999999  99999821        122322222   223568899999999999999999999865 458


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++|||||++|+|.+++.. ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++..
T Consensus        84 ~lvmE~~~~g~L~~~l~~-~~~~l~~~~~~~i~~qi~~gL~ylH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~  159 (285)
T d1u59a_          84 MLVMEMAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKAL  159 (285)
T ss_dssp             EEEEECCTTEEHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             EEEEEeCCCCcHHHHhhc-cccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCcCchhheeeccCCceeeccchhhhcc
Confidence            999999999999999865 446799999999999999999999999   9999999999999999999999999999754


Q ss_pred             C--------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          169 S--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       169 ~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      .              ++.|+|||++....++.++|||||||++|||++ |..||..... .   .+.    ..+.++.  
T Consensus       160 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~-~---~~~----~~i~~~~--  229 (285)
T d1u59a_         160 GADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG-P---EVM----AFIEQGK--  229 (285)
T ss_dssp             TTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT-H---HHH----HHHHTTC--
T ss_pred             cccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCH-H---HHH----HHHHcCC--
Confidence            3              456999999998899999999999999999998 8999964311 1   111    1111111  


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                          ..+.|..++.++.+|+.+||+.||++|||+.+|++.|
T Consensus       230 ----~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L  266 (285)
T d1u59a_         230 ----RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  266 (285)
T ss_dssp             ----CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             ----CCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence                1135566778999999999999999999999998764

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-52  Score=350.23  Aligned_cols=225  Identities=17%  Similarity=0.182  Sum_probs=182.7

Q ss_pred             ccCCCCCCCCcchhHHHH--------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           28 SLNDRNSPRSKSVWSCMR--------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        28 ~~~g~g~~~~g~vy~~~~--------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      +.||+|+|  |.||+|..        .++|.+...    ...++|.+|+++|++++|||||+++|+|.+ +..+||||||
T Consensus        13 k~iG~G~f--G~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~   89 (277)
T d1xbba_          13 KELGSGNF--GTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMA   89 (277)
T ss_dssp             EEEEECSS--EEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECC
T ss_pred             CCcccCCC--eEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcC
Confidence            46999999  99999821        122322221    123468899999999999999999999865 4578999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++|+|.+++..  ...+++..++.++.|++.||.|||++   +++||||||+||+++.++.+|++|||+++...      
T Consensus        90 ~~g~L~~~l~~--~~~l~~~~~~~i~~qi~~gl~ylH~~---~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~  164 (277)
T d1xbba_          90 ELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY  164 (277)
T ss_dssp             TTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEE
T ss_pred             CCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHhhHHhC---CcccCCCcchhhcccccCcccccchhhhhhcccccccc
Confidence            99999999986  45799999999999999999999999   99999999999999999999999999997532      


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                              ++.|+|||.+....++.++|||||||++|||++ |..||....  ..  .+.    ..+.++      ...+
T Consensus       165 ~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~--~~--~~~----~~i~~~------~~~~  230 (277)
T d1xbba_         165 KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK--GS--EVT----AMLEKG------ERMG  230 (277)
T ss_dssp             EC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC--HH--HHH----HHHHTT------CCCC
T ss_pred             ccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCC--HH--HHH----HHHHcC------CCCC
Confidence                    467999999999999999999999999999997 899996431  11  111    111111      1113


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .|..++.++.+|+.+||+.||++|||+++|+++|
T Consensus       231 ~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L  264 (277)
T d1xbba_         231 CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL  264 (277)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHh
Confidence            5566778999999999999999999999997754

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-51  Score=347.44  Aligned_cols=231  Identities=16%  Similarity=0.154  Sum_probs=189.4

Q ss_pred             hhccccccCCCCCCCCcchhHH-------HHHHHHH-hcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC-------MRALMAT-VNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~~-~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ++|.....||+|+|  |.||+|       .+|+|.. .......+.+.+|+.+|++++|||||++++++.+++..++|||
T Consensus        20 ~~Y~~~~~iG~G~f--g~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE   97 (293)
T d1yhwa1          20 KKYTRFEKIGQGAS--GTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (293)
T ss_dssp             TTBCSCEECCCSSS--CEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cccEEEEEEecCcC--cEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEE
Confidence            46888899999999  999999       2222221 1122334567899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-----  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-----  168 (274)
                      ||++|+|.+++..   +.+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++..     
T Consensus        98 y~~gg~L~~~~~~---~~l~~~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~  171 (293)
T d1yhwa1          98 YLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  171 (293)
T ss_dssp             CCTTCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC
T ss_pred             ecCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCcHHHeEECCCCcEeeccchhheeeccccc
Confidence            9999999999875   4699999999999999999999999   9999999999999999999999999999754     


Q ss_pred             ------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          169 ------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       169 ------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            +|+.|+|||++.+..++.++||||+||++|+|++|..||....   ....+    .......     ......+
T Consensus       172 ~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~---~~~~~----~~~~~~~-----~~~~~~~  239 (293)
T d1yhwa1         172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN---PLRAL----YLIATNG-----TPELQNP  239 (293)
T ss_dssp             CBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSC---HHHHH----HHHHHHC-----SCCCSSG
T ss_pred             cccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCC---HHHHH----HHHHhCC-----CCCCCCc
Confidence                  2677999999999999999999999999999999999996431   11111    1111110     0111234


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...++.+.+++.+||+.||++|||+.|+++
T Consensus       240 ~~~s~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         240 EKLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             GGSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             ccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            456788999999999999999999999975

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-51  Score=346.70  Aligned_cols=233  Identities=20%  Similarity=0.164  Sum_probs=186.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|...+.||+|+|  |.||+|.      ..++|.+..   ....+++.+|+++|++++|||||++++++.+++..++|
T Consensus         4 ~~dy~~~~~lG~G~f--g~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~iv   81 (271)
T d1nvra_           4 VEDWDLVQTLGEGAY--GEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   81 (271)
T ss_dssp             TTEEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcceEEEEEEecCcC--eEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEE
Confidence            357888899999999  9999981      122232222   13456789999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      ||||++|+|.+++..  ...+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++..   
T Consensus        82 mEy~~gg~L~~~l~~--~~~l~e~~~~~i~~qi~~al~ylH~~---~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~  156 (271)
T d1nvra_          82 LEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYN  156 (271)
T ss_dssp             EECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECEET
T ss_pred             EeccCCCcHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHc---CCccCcccHHHEEECCCCCEEEccchhheeeccC
Confidence            999999999999964  56799999999999999999999999   9999999999999999999999999998743   


Q ss_pred             ----------CCCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 ----------SDKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 ----------~~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                                +|+.|+|||++....+ +.++||||+||++|||++|+.||..........  ..     .....     .
T Consensus       157 ~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~--~~-----~~~~~-----~  224 (271)
T d1nvra_         157 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY--SD-----WKEKK-----T  224 (271)
T ss_dssp             TEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHH--HH-----HHTTC-----T
T ss_pred             CccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHH--HH-----HhcCC-----C
Confidence                      3678999999988775 678999999999999999999997542221111  00     00000     0


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ........++++.+|+.+||+.||++|||++|+++
T Consensus       225 ~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         225 YLNPWKKIDSAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            00122344578899999999999999999999986

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-52  Score=357.39  Aligned_cols=236  Identities=18%  Similarity=0.184  Sum_probs=191.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-----------HHHHHHhcC---CCCCCcHHHHHHHHhcC-CCCccceEeEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNS---PYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRG   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~   85 (274)
                      .++|...+.||+|+|  |.||+|.           .+++|....   ......+.+|+.+|+++ +|||||++++++.+.
T Consensus        36 ~~~~~l~~~lG~G~f--G~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~  113 (325)
T d1rjba_          36 RENLEFGKVLGSGAF--GKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS  113 (325)
T ss_dssp             GGGEEEEEEEEECSS--EEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHHeEEeeEEeeCCC--eEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeC
Confidence            357777889999999  9999982           122332221   23445678999999998 799999999999999


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCC---------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAE---------------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDI  144 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~---------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl  144 (274)
                      +..++|||||++|+|.+++.....                     ..+++..++.++.|++.||.|||++   +|+||||
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~---~IiHRDl  190 (325)
T d1rjba_         114 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDL  190 (325)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTC
T ss_pred             CeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccC
Confidence            999999999999999999986421                     3489999999999999999999999   9999999


Q ss_pred             CCCceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCcccc
Q 048314          145 KPQNILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEID  210 (274)
Q Consensus       145 ~~~nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~  210 (274)
                      ||+||+++.++.+||+|||+++...             ++.|+|||++....++.++|||||||++|||++ |..||...
T Consensus       191 Kp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~  270 (325)
T d1rjba_         191 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI  270 (325)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             chhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999986432             567999999999999999999999999999997 89999644


Q ss_pred             CCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          211 ASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .....   +.    ....++     .+ .+.|..+++++.+||.+||+.||++|||++||+++|
T Consensus       271 ~~~~~---~~----~~~~~~-----~~-~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L  321 (325)
T d1rjba_         271 PVDAN---FY----KLIQNG-----FK-MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL  321 (325)
T ss_dssp             CCSHH---HH----HHHHTT-----CC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CHHHH---HH----HHHhcC-----CC-CCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            22211   11    111111     11 135556778999999999999999999999999876

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-51  Score=344.84  Aligned_cols=233  Identities=15%  Similarity=0.151  Sum_probs=193.0

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAALD   95 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~   95 (274)
                      ++|.-.+.||+|+|  |.||+|.      +|+|.........+.|.+|++++++++|||||+++|+|.+++..++||||+
T Consensus         4 ~~~~~~~~iG~G~f--g~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~   81 (258)
T d1k2pa_           4 KDLTFLKELGTGQF--GVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM   81 (258)
T ss_dssp             CCCCCCCCCCEETT--EEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECC
T ss_pred             HHCEEeEEEecCCC--eEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEcc
Confidence            57777889999999  9999982      222222233355677899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC------
Q 048314           96 LPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS------  169 (274)
Q Consensus        96 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~------  169 (274)
                      ++|+|.+++.. ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++...      
T Consensus        82 ~~g~l~~~~~~-~~~~~~~~~~~~i~~qi~~gl~~LH~~---~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~  157 (258)
T d1k2pa_          82 ANGCLLNYLRE-MRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTS  157 (258)
T ss_dssp             TTEEHHHHHHS-GGGCCCHHHHHHHHHHHHHHHHHHHHT---TBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCC
T ss_pred             CCCcHHHhhhc-cccCCcHHHHHHHHHHHHHHHHHHhhc---CcccccccceeEEEcCCCcEEECcchhheeccCCCcee
Confidence            99999999876 456789999999999999999999999   99999999999999999999999999986533      


Q ss_pred             ------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 ------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 ------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                            +..|+|||.+....++.++||||||+++|||++ |+.||....   .. .+.    ..+.++     . ....|
T Consensus       158 ~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~---~~-~~~----~~i~~~-----~-~~~~p  223 (258)
T d1k2pa_         158 SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT---NS-ETA----EHIAQG-----L-RLYRP  223 (258)
T ss_dssp             CCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC---HH-HHH----HHHHTT-----C-CCCCC
T ss_pred             ecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCC---HH-HHH----HHHHhC-----C-CCCCc
Confidence                  456999999999999999999999999999998 788986431   11 111    111111     1 11345


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...++.+.+++.+||+.||++|||+.|+++.|
T Consensus       224 ~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L  255 (258)
T d1k2pa_         224 HLASEKVYTIMYSCWHEKADERPTFKILLSNI  255 (258)
T ss_dssp             TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHccCCHhHCcCHHHHHHHh
Confidence            56678899999999999999999999999865

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-51  Score=349.20  Aligned_cols=233  Identities=17%  Similarity=0.126  Sum_probs=189.1

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcC--CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNS--PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      +.|.....||+|+|  |.||+|.      ..++|.+..  ....+.+.+|+++|++++|||||++++++.+++..++|||
T Consensus        12 d~Y~i~~~iG~G~f--g~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmE   89 (288)
T d2jfla1          12 DFWEIIGELGDGAF--GKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIE   89 (288)
T ss_dssp             GTEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cCeEEeEEEeeCCC--cEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEe
Confidence            35676788999999  9999992      222333322  2445678899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec-----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL-----  168 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~-----  168 (274)
                      ||++|+|.+++.+ ..+.+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++..     
T Consensus        90 y~~~g~L~~~~~~-~~~~l~e~~~~~i~~qi~~gL~ylH~~---~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~  165 (288)
T d2jfla1          90 FCAGGAVDAVMLE-LERPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ  165 (288)
T ss_dssp             CCTTEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHH
T ss_pred             cCCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEeecChhheeECCCCCEEEEechhhhccCCCcc
Confidence            9999999999876 346799999999999999999999999   9999999999999999999999999998643     


Q ss_pred             ------CCCCcCCCcccc-----cCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 ------SDKGCMAPECYK-----RTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 ------~~~~~~ape~~~-----~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                            +++.|+|||++.     ...|+.++|||||||++|||++|+.||.....  .. .+..     .......    
T Consensus       166 ~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~--~~-~~~~-----i~~~~~~----  233 (288)
T d2jfla1         166 RRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNP--MR-VLLK-----IAKSEPP----  233 (288)
T ss_dssp             HHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCG--GG-HHHH-----HHHSCCC----
T ss_pred             cccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCH--HH-HHHH-----HHcCCCC----
Confidence                  378899999884     44678999999999999999999999964311  11 1110     1111110    


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....+...++++.+|+.+||+.||++|||++|+++
T Consensus       234 ~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         234 TLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             CCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCCccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            11234456788999999999999999999999986

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-51  Score=349.59  Aligned_cols=234  Identities=21%  Similarity=0.231  Sum_probs=187.9

Q ss_pred             hhccccccCCCCCCCCcchhHHH----------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM----------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~----------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      .+|...++||+|+|  |.||+|.          ..++|.+...   ....+|.+|+++|++++|||||+++|+|.+.+..
T Consensus         7 ~~~~~~~~iG~G~f--G~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~   84 (283)
T d1mqba_           7 SCVTRQKVIGAGEF--GEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPM   84 (283)
T ss_dssp             TTEEEEEEEEECSS--SEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSE
T ss_pred             HHeEeeeEEeeCCC--eEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCce
Confidence            46788899999999  9999982          1222322221   1234578999999999999999999999999999


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++|||||.+|++.+++.. ....++|..++.++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus        85 ~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~i~~gl~~lH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~  160 (283)
T d1mqba_          85 MIITEYMENGALDKFLRE-KDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVL  160 (283)
T ss_dssp             EEEEECCTTEEHHHHHHH-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             EEEEEecccCcchhhhhc-ccccccHHHHHHHHHHHHHhhhhcccc---ccccCccccceEEECCCCeEEEcccchhhcc
Confidence            999999999999999876 456799999999999999999999999   9999999999999999999999999999753


Q ss_pred             C--------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 S--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .              +..|+|||++....++.++|||||||++|||++|..|+..... ..  .+.    ....++    
T Consensus       161 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~-~~--~~~----~~i~~~----  229 (283)
T d1mqba_         161 EDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS-NH--EVM----KAINDG----  229 (283)
T ss_dssp             -------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-HH--HHH----HHHHTT----
T ss_pred             cCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCC-HH--HHH----HHHhcc----
Confidence            2              4569999999999999999999999999999997776653311 11  111    111111    


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       .+ .+.+..++..+.+|+.+||+.||++|||+.||+++|
T Consensus       230 -~~-~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L  267 (283)
T d1mqba_         230 -FR-LPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSIL  267 (283)
T ss_dssp             -CC-CCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             -CC-CCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHH
Confidence             11 134556778899999999999999999999998764

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-51  Score=351.73  Aligned_cols=245  Identities=17%  Similarity=0.166  Sum_probs=190.3

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .++|...+.||+|+|  |.||+|.      ..++|.+...   ...+++.+|+.+|++++|||||+++++|.+.++.++|
T Consensus         5 ~d~y~~~~~iG~G~f--g~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iV   82 (322)
T d1s9ja_           5 DDDFEKISELGAGNG--GVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC   82 (322)
T ss_dssp             GGGEEEEEEEECCSS--CCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCCEEEEEEecCCC--eEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            568998999999999  9999982      2223333322   2234577999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEecccccee---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL---  167 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~---  167 (274)
                      ||||++|+|.+++.+  .+.+++..++.++.|++.||.|||+ +   +|+||||||+|||++.++.+||+|||+++.   
T Consensus        83 mEy~~gg~L~~~l~~--~~~l~~~~~~~~~~qil~aL~yLH~~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~  157 (322)
T d1s9ja_          83 MEHMDGGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  157 (322)
T ss_dssp             EECCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH
T ss_pred             EEcCCCCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHhC---CEEccccCHHHeeECCCCCEEEeeCCCccccCC
Confidence            999999999999986  3579999999999999999999996 6   899999999999999999999999999864   


Q ss_pred             ------cCCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh-------------
Q 048314          168 ------LSDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI-------------  228 (274)
Q Consensus       168 ------~~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~-------------  228 (274)
                            .+|+.|+|||++.+..|+.++||||+||++|||++|+.||.....................             
T Consensus       158 ~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (322)
T d1s9ja_         158 SMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPL  237 (322)
T ss_dssp             HTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC----------------------
T ss_pred             CccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccc
Confidence                  3478899999999999999999999999999999999999754322211110000000000             


Q ss_pred             -----h--------hhhhhhhc---CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          229 -----N--------RELNKLVR---GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       229 -----~--------~~~~~~~~---~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                           .        ........   +.......+.++.+++.+||+.||++|||++|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~  297 (322)
T d1s9ja_         238 SSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV  297 (322)
T ss_dssp             --------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence                 0        00000000   00111223578999999999999999999999986

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-51  Score=346.65  Aligned_cols=236  Identities=15%  Similarity=0.150  Sum_probs=181.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEe--CCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR--GSKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~   88 (274)
                      .++|...+.||+|+|  |.||+|.      ..++|.+...    ...+.+.+|+++|++++|||||++++++.+  ++..
T Consensus         3 ~edy~~~~~iG~G~f--g~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~   80 (269)
T d2java1           3 AEDYEVLYTIGTGSY--GRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTL   80 (269)
T ss_dssp             GGGEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CE
T ss_pred             chhCEEeEEEecCCC--eEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEE
Confidence            367888899999999  9999992      1222322222    112347799999999999999999999865  4568


Q ss_pred             eEEEEeCCCCCHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHhcCC--CCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           89 STEAALDLPWDLAYIIFCS--AERNPYWNQRVRIALDVAKGILYLHDEC--EPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~--~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      ++|||||++|+|.+++...  ....+++..++.++.|++.||.|||+..  ..+|+||||||+|||++.++.+||+|||+
T Consensus        81 ~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~  160 (269)
T d2java1          81 YIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGL  160 (269)
T ss_dssp             EEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHH
T ss_pred             EEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccc
Confidence            9999999999999999743  3457999999999999999999999861  01399999999999999999999999999


Q ss_pred             ceec-----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          165 AKLL-----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       165 ~~~~-----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ++..           +++.|+|||++....++.++|||||||++|||++|..||...   ... .+.    ....++.. 
T Consensus       161 a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~---~~~-~~~----~~i~~~~~-  231 (269)
T d2java1         161 ARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF---SQK-ELA----GKIREGKF-  231 (269)
T ss_dssp             HHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS---SHH-HHH----HHHHHTCC-
T ss_pred             eeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCC---CHH-HHH----HHHHcCCC-
Confidence            8643           267899999999989999999999999999999999999643   111 111    11111111 


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                           ...+...++++.+++.+||+.||++|||++|+++
T Consensus       232 -----~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         232 -----RRIPYRYSDELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             -----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -----CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence                 1245566788999999999999999999999986

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-50  Score=340.99  Aligned_cols=226  Identities=19%  Similarity=0.186  Sum_probs=178.6

Q ss_pred             cccCCCCCCCCcchhHHHH------HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEe----CCcceEEE
Q 048314           27 SSLNDRNSPRSKSVWSCMR------ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR----GSKPSTEA   92 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~------~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~   92 (274)
                      ...||+|+|  |.||+|..      .++|.+...    ...+.+.+|+++|++++|||||++++++.+    ....++||
T Consensus        14 ~~~iG~G~f--g~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          14 DIEIGRGSF--KTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEEECSS--EEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             eeEEecCcC--cEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            456999999  99999911      112222111    223457899999999999999999999865    34579999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--cccCCCCCCceEEc-CCCcEEEeccccceec-
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMD-EFWTAKISDFGLAKLL-  168 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~-~~~~~kl~d~g~~~~~-  168 (274)
                      |||++|+|.+++..  ...+++..++.++.|++.||.|||++   +  |+||||||+|||++ .++.+||+|||+++.. 
T Consensus        92 E~~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~gl~yLH~~---~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~  166 (270)
T d1t4ha_          92 ELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  166 (270)
T ss_dssp             ECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             eCCCCCcHHHHHhc--cccccHHHHHHHHHHHHHHHHHHHHC---CCCEEeCCcChhhceeeCCCCCEEEeecCcceecc
Confidence            99999999999986  45799999999999999999999998   7  99999999999996 5789999999999643 


Q ss_pred             --------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          169 --------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       169 --------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                              +|+.|+|||++.. .++.++|||||||++|||++|+.||..... ..  .+.    ....     ....+..
T Consensus       167 ~~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~-~~--~~~----~~i~-----~~~~~~~  233 (270)
T d1t4ha_         167 ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN-AA--QIY----RRVT-----SGVKPAS  233 (270)
T ss_dssp             TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS-HH--HHH----HHHT-----TTCCCGG
T ss_pred             CCccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCccc-HH--HHH----HHHH-----cCCCCcc
Confidence                    3788999998865 689999999999999999999999964311 11  111    1111     1111222


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+...++++.+++.+||+.||++|||++|+++
T Consensus       234 ~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         234 FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cCccCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence            33345567999999999999999999999986

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-51  Score=342.58  Aligned_cols=234  Identities=18%  Similarity=0.188  Sum_probs=186.5

Q ss_pred             hhccccccCCCCCCCCcchhHH----HHHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEe-CCcceEEEEeCC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC----MRALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR-GSKPSTEAALDL   96 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~----~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~e~~~   96 (274)
                      ++|.-.+.||+|+|  |.||+|    ...++|.+......+.+.+|++++++++|||||+++|+|.+ .+..++||||++
T Consensus         7 ~~~~~~~~lG~G~f--g~Vy~~~~~~~~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~   84 (262)
T d1byga_           7 KELKLLQTIGKGEF--GDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA   84 (262)
T ss_dssp             GGEEEEEEEEECSS--CEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCT
T ss_pred             HHeEEeEEEecCCC--eEEEEEEECCeEEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccC
Confidence            46666788999999  999998    22233444455566779999999999999999999999965 466899999999


Q ss_pred             CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-------
Q 048314           97 PWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-------  169 (274)
Q Consensus        97 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-------  169 (274)
                      +|+|.+++.......++|..++.++.|++.||.|||+.   +++||||||+||+++.++.+|++|||+++...       
T Consensus        85 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~  161 (262)
T d1byga_          85 KGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGK  161 (262)
T ss_dssp             TEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC------------
T ss_pred             CCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccC---ceeccccchHhheecCCCCEeecccccceecCCCCcccc
Confidence            99999999764444699999999999999999999999   99999999999999999999999999997643       


Q ss_pred             -CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHH
Q 048314          170 -DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLE  247 (274)
Q Consensus       170 -~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (274)
                       +..|+|||++....++.++||||||+++|||++ |+.||....  ...  +..    .+.++     .++ +.+...+.
T Consensus       162 ~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~--~~~--~~~----~i~~~-----~~~-~~~~~~~~  227 (262)
T d1byga_         162 LPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LKD--VVP----RVEKG-----YKM-DAPDGCPP  227 (262)
T ss_dssp             CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC--GGG--HHH----HHTTT-----CCC-CCCTTCCH
T ss_pred             ccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCC--HHH--HHH----HHHcC-----CCC-CCCccCCH
Confidence             567999999998899999999999999999998 577765331  111  111    01111     111 35556678


Q ss_pred             HHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          248 NLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       248 ~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ++.+|+.+||+.||++|||+.||+++|
T Consensus       228 ~~~~li~~cl~~dP~~Rps~~~l~~~L  254 (262)
T d1byga_         228 AVYEVMKNCWHLDAAMRPSFLQLREQL  254 (262)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHcccCHhHCcCHHHHHHHH
Confidence            899999999999999999999999875

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-50  Score=343.23  Aligned_cols=228  Identities=16%  Similarity=0.144  Sum_probs=189.5

Q ss_pred             hhccccccCCCCCCCCcchhHH-------HHHHH----HHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC-------MRALM----ATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~-------~~~~~----~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      .+|...+.||+|+|  |.||+|       .+|+|    .........+.+.+|+++|++++|||||++++++.+++..++
T Consensus         8 ~dy~i~~~lG~G~f--g~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i   85 (288)
T d1uu3a_           8 EDFKFGKILGEGSF--STVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYF   85 (288)
T ss_dssp             GGEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEE
T ss_pred             CCCEEEEEEeeCCC--eEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEE
Confidence            57888999999999  999998       11211    112222344568899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec--
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL--  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~--  168 (274)
                      |||||++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++..  
T Consensus        86 vmEy~~gg~L~~~~~~--~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~  160 (288)
T d1uu3a_          86 GLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSP  160 (288)
T ss_dssp             EECCCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECC-
T ss_pred             EEEccCCCCHHHhhhc--cCCCCHHHHHHHHHHHHHHHHhhccc---cEEcCcCCccccccCCCceEEecccccceeccc
Confidence            9999999999999886  46799999999999999999999999   9999999999999999999999999999753  


Q ss_pred             -----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhc
Q 048314          169 -----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVR  237 (274)
Q Consensus       169 -----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (274)
                                 +|+.|+|||++.+..++.++||||+||++|||++|..||...   ... .+.    ....+.       
T Consensus       161 ~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~---~~~-~~~----~~i~~~-------  225 (288)
T d1uu3a_         161 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG---NEY-LIF----QKIIKL-------  225 (288)
T ss_dssp             ---------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCS---SHH-HHH----HHHHTT-------
T ss_pred             CCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCc---CHH-HHH----HHHHcC-------
Confidence                       367899999999999999999999999999999999999643   111 110    111111       


Q ss_pred             CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHH
Q 048314          238 GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVV  271 (274)
Q Consensus       238 ~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl  271 (274)
                      ...+|...++++.+||.+||+.||++|||++|++
T Consensus       226 ~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~  259 (288)
T d1uu3a_         226 EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEME  259 (288)
T ss_dssp             CCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGT
T ss_pred             CCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHc
Confidence            1124555678899999999999999999999864

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.8e-50  Score=343.96  Aligned_cols=234  Identities=17%  Similarity=0.175  Sum_probs=180.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      .+.|.....||+|+|  |.||+|.      ..++|.+...   ...+.+.+|+++|++++|||||++++++.+++..++|
T Consensus         8 ~d~Y~~~~~lG~G~f--g~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv   85 (307)
T d1a06a_           8 RDIYDFRDVLGTGAF--SEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLI   85 (307)
T ss_dssp             GGTEEEEEESBSGGG--GGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeccC--eEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            355777899999999  9999981      1122222211   2345677999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc---CCCcEEEeccccceec
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKISDFGLAKLL  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~---~~~~~kl~d~g~~~~~  168 (274)
                      ||||++|+|.+++..  .+.+++..+..++.|++.||.|||+.   +++||||||+||++.   .++.+||+|||+++..
T Consensus        86 mE~~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~  160 (307)
T d1a06a_          86 MQLVSGGELFDRIVE--KGFYTERDASRLIFQVLDAVKYLHDL---GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKME  160 (307)
T ss_dssp             ECCCCSCBHHHHHHT--CSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCC------
T ss_pred             EeccCCCcHHHhhhc--ccCCCHHHHHHHHHHHHHHHHhhhhc---eeeeEEecccceeecccCCCceEEEeccceeEEc
Confidence            999999999999975  56799999999999999999999999   999999999999994   5789999999998643


Q ss_pred             ----------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          169 ----------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       169 ----------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                +|+.|+|||++.+..++.++|||||||++|||++|..||....   . ..+..    ......   .-.+
T Consensus       161 ~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~---~-~~~~~----~i~~~~---~~~~  229 (307)
T d1a06a_         161 DPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEN---D-AKLFE----QILKAE---YEFD  229 (307)
T ss_dssp             ------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS---H-HHHHH----HHHTTC---CCCC
T ss_pred             cCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCC---H-HHHHH----HHhccC---CCCC
Confidence                      3788999999999999999999999999999999999996431   1 11111    111110   0111


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+.+...++++.+++.+||+.||++|||++|+++
T Consensus       230 ~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         230 SPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             TTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CccccCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            1233456678999999999999999999999986

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-50  Score=343.91  Aligned_cols=235  Identities=20%  Similarity=0.236  Sum_probs=190.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-----HHHHHHhc-CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-----RALMATVN-SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-----~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      .++|.....||+|+|  |.||+|.     ..++|.+. .....+.|.+|+.+|++++|||||+++|+|.+ +..++||||
T Consensus        16 ~~~~~i~~~iG~G~f--g~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~~~~lv~Ey   92 (285)
T d1fmka3          16 RESLRLEVKLGQGCF--GEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY   92 (285)
T ss_dssp             GGGEEEEEEEEECSS--CEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred             HHHEEEeeEEeeCCC--eEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEec-CCeEEEEEe
Confidence            367888889999999  9999991     12233332 32445678999999999999999999999854 568999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-----
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-----  169 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-----  169 (274)
                      |++|+|..++.......++|..++.++.|++.||.|||+.   +++||||||+|||++.++.+||+|||+++...     
T Consensus        93 ~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~---~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~  169 (285)
T d1fmka3          93 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT  169 (285)
T ss_dssp             CTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred             cCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhh---heecccccceEEEECCCCcEEEcccchhhhccCCCce
Confidence            9999999999865556799999999999999999999999   99999999999999999999999999986532     


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                             ++.|+|||.+....++.++||||||+++|||++|..|+.......   .+...    ...+     . ..+.+
T Consensus       170 ~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~---~~~~~----i~~~-----~-~~~~~  236 (285)
T d1fmka3         170 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR---EVLDQ----VERG-----Y-RMPCP  236 (285)
T ss_dssp             ------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH---HHHHH----HHTT-----C-CCCCC
T ss_pred             eeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHH---HHHHH----HHhc-----C-CCCCC
Confidence                   567999999999999999999999999999999877765432111   11111    1111     1 11355


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          243 KKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+++++.+++.+||+.||++|||+++|+++|
T Consensus       237 ~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L  268 (285)
T d1fmka3         237 PECPESLHDLMCQCWRKEPEERPTFEYLQAFL  268 (285)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             cccCHHHHHHHHHHcccCHhHCcCHHHHHHHH
Confidence            66778899999999999999999999998754

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.8e-50  Score=344.95  Aligned_cols=231  Identities=17%  Similarity=0.157  Sum_probs=186.1

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCCC-----CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPY-----SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~-----~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ..|...+.||+|+|  |.||+|.      ..++|.+....     ..+.+.+|+++|++++|||||++++++.+++..++
T Consensus        15 ~~y~~l~~lG~G~f--g~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~i   92 (309)
T d1u5ra_          15 KLFSDLREIGHGSF--GAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWL   92 (309)
T ss_dssp             HHEEEEEEEEECSS--SEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             HhcEeeEEEecCCC--eEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEE
Confidence            45888888999999  9999992      12223222211     12357799999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      |||||.+|+|..++..  ...+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||++.... 
T Consensus        93 v~E~~~~g~l~~~~~~--~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (309)
T d1u5ra_          93 VMEYCLGSASDLLEVH--KKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  167 (309)
T ss_dssp             EEECCSEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred             EEEecCCCchHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEECCCCCEEEeecccccccCC
Confidence            9999999999877765  46799999999999999999999999   99999999999999999999999999997543 


Q ss_pred             ------CCCcCCCccccc---CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 ------DKGCMAPECYKR---TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 ------~~~~~ape~~~~---~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                            |+.|+|||++..   ..|+.++|||||||++|||++|..||....   ....+    ... ...     ..+..
T Consensus       168 ~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~---~~~~~----~~i-~~~-----~~~~~  234 (309)
T d1u5ra_         168 ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN---AMSAL----YHI-AQN-----ESPAL  234 (309)
T ss_dssp             BCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC---HHHHH----HHH-HHS-----CCCCC
T ss_pred             CCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCC---HHHHH----HHH-HhC-----CCCCC
Confidence                  788999999864   458899999999999999999999996431   11100    011 011     11112


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .+...++.+.+|+.+||+.||++|||++|+++
T Consensus       235 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         235 QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence            33455678999999999999999999999975

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-50  Score=338.23  Aligned_cols=233  Identities=15%  Similarity=0.157  Sum_probs=182.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      .++|.....||+|+|  |.||+|..         .++|.....   ...+.|.+|+.+|++++|||||+++|++. .+..
T Consensus         6 ~~~~~l~~~iG~G~f--g~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~   82 (273)
T d1mp8a_           6 RERIELGRCIGEGQF--GDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV   82 (273)
T ss_dssp             GGGEEEEEEEEECSS--SEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSC
T ss_pred             HHHeEEEEEEeeCCC--cEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeE
Confidence            356777889999999  99999821         112222211   12345789999999999999999999986 4678


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++|||||++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++..
T Consensus        83 ~iv~E~~~~g~l~~~~~~-~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~  158 (273)
T d1mp8a_          83 WIIMELCTLGELRSFLQV-RKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYM  158 (273)
T ss_dssp             EEEEECCTTEEHHHHHHH-TTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC-------
T ss_pred             EEEEEeccCCcHHhhhhc-cCCCCCHHHHHHHHHHHHHHhhhhccc---CeeccccchhheeecCCCcEEEccchhheec
Confidence            999999999999999876 456799999999999999999999999   9999999999999999999999999998754


Q ss_pred             C------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          169 S------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       169 ~------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      .            ++.|+|||.+....++.++|||||||++|||++ |.+||.....  ..  +.    ....++.    
T Consensus       159 ~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~--~~--~~----~~i~~~~----  226 (273)
T d1mp8a_         159 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN--ND--VI----GRIENGE----  226 (273)
T ss_dssp             ------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GG--HH----HHHHTTC----
T ss_pred             cCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCH--HH--HH----HHHHcCC----
Confidence            3            567999999999999999999999999999987 7888864311  11  10    1111111    


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        ..+.+...++.+.+||.+||+.||++|||+.||++.|
T Consensus       227 --~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L  263 (273)
T d1mp8a_         227 --RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQL  263 (273)
T ss_dssp             --CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --CCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence              1135566778999999999999999999999998764

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1.3e-49  Score=346.32  Aligned_cols=235  Identities=14%  Similarity=0.111  Sum_probs=188.7

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .++|.....||+|+|  |.||+|.      ..++|.+...  ...+.+.+|+++|++++|||||++++++.+.+..++||
T Consensus        25 l~~Y~i~~~lG~G~f--g~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm  102 (350)
T d1koaa2          25 LDHYDIHEELGTGAF--GVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY  102 (350)
T ss_dssp             GGTEEEEEEEEEETT--EEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEE
T ss_pred             ccCeEEEEEEecCcC--eEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            357888899999999  9999982      1123322222  22345679999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc--CCCcEEEeccccceecC-
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD--EFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~--~~~~~kl~d~g~~~~~~-  169 (274)
                      |||++|+|.+++.. ..+.+++..++.++.||+.||.|||++   +++||||||+|||+.  .++.+||+|||+++... 
T Consensus       103 E~~~gg~L~~~l~~-~~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~  178 (350)
T d1koaa2         103 EFMSGGELFEKVAD-EHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP  178 (350)
T ss_dssp             CCCCSCBHHHHHTC-TTSCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTSCCEEECCCTTCEECCT
T ss_pred             EcCCCCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHhc---CCeeeeechhHeeeccCCCCeEEEeecchheeccc
Confidence            99999999999965 345799999999999999999999999   999999999999995  45789999999987543 


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                               |+.|+|||++.+..++.++||||+||++|+|++|..||...   .....+.     ......   ...+..
T Consensus       179 ~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~---~~~~~~~-----~i~~~~---~~~~~~  247 (350)
T d1koaa2         179 KQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE---NDDETLR-----NVKSCD---WNMDDS  247 (350)
T ss_dssp             TSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCS---SHHHHHH-----HHHHTC---CCSCCG
T ss_pred             ccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCC---CHHHHHH-----HHHhCC---CCCCcc
Confidence                     77899999999999999999999999999999999999643   1111111     111110   000111


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .....++++.+|+.+||+.||++|||++|+++
T Consensus       248 ~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         248 AFSGISEDGKDFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             GGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             cccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            22345678999999999999999999999986

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-50  Score=343.42  Aligned_cols=232  Identities=18%  Similarity=0.210  Sum_probs=188.5

Q ss_pred             hhccccccCCCCCCCCcchhHHH----------HHHHHHhcC---CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM----------RALMATVNS---PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~----------~~~~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~   88 (274)
                      .+|...++||+|+|  |.||+|.          ++++|....   ....++|.+|+++|++++|||||+++|+|.++ ..
T Consensus         9 ~dy~~~~~lG~G~f--G~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~   85 (317)
T d1xkka_           9 TEFKKIKVLGSGAF--GTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TV   85 (317)
T ss_dssp             TTEEEEEEEEECSS--EEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SE
T ss_pred             HHCEEeeEEecCCC--eEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-Ce
Confidence            46888999999999  9999982          122222222   13345688999999999999999999999865 46


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      ++++||+.+|+|.+++.. ....+++..++.++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++..
T Consensus        86 ~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~qi~~gl~yLH~~---~iiHrDlKp~NIll~~~~~~kl~DFGla~~~  161 (317)
T d1xkka_          86 QLITQLMPFGCLLDYVRE-HKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLL  161 (317)
T ss_dssp             EEEEECCTTCBHHHHHHH-TSSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCCSHHHHT
T ss_pred             eEEEEeccCCcccccccc-cccCCCHHHHHHHHHHHHHHHHHHHHc---CcccCcchhhcceeCCCCCeEeeccccceec
Confidence            788999999999999887 456799999999999999999999999   9999999999999999999999999998753


Q ss_pred             C-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhhhh
Q 048314          169 S-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINRELNK  234 (274)
Q Consensus       169 ~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .             ++.|+|||.+..+.++.++|||||||++|||+| |..||....  ...  +.    ....++.   
T Consensus       162 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~--~~~--~~----~~i~~~~---  230 (317)
T d1xkka_         162 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASE--IS----SILEKGE---  230 (317)
T ss_dssp             TTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC--GGG--HH----HHHHHTC---
T ss_pred             ccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC--HHH--HH----HHHHcCC---
Confidence            2             568999999999999999999999999999998 688876431  111  11    1111110   


Q ss_pred             hhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          235 LVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       235 ~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                         ..+.|..++..+.+++.+||+.||++|||+.||++.|
T Consensus       231 ---~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l  267 (317)
T d1xkka_         231 ---RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEF  267 (317)
T ss_dssp             ---CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ---CCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHH
Confidence               1134556778899999999999999999999998753

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-48  Score=336.00  Aligned_cols=230  Identities=17%  Similarity=0.162  Sum_probs=191.5

Q ss_pred             hhhccccccCCCCCCCCcchhHH-------HHHH----HHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcce
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC-------MRAL----MATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~-------~~~~----~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~   89 (274)
                      .++|...+.||+|+|  |.||+|       .+|+    +.........+.+.+|+.+|++++|||||++++++.+++..+
T Consensus         4 l~dy~~~~~lG~G~f--g~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~   81 (337)
T d1o6la_           4 MNDFDYLKLLGKGTF--GKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             GGGEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             hHhcEEEEEEecCcC--eEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccc
Confidence            468899999999999  999998       1111    112223334566789999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +|||||++|+|.+++..  .+.+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++...
T Consensus        82 iv~ey~~gg~L~~~~~~--~~~~~e~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~  156 (337)
T d1o6la_          82 FVMEYANGGELFFHLSR--ERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGI  156 (337)
T ss_dssp             EEEECCTTCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred             cceeccCCCchhhhhhc--ccCCcHHHHHHHHHHHhhhhhhhhhc---CccccccCHHHeEecCCCCEEEeecccccccc
Confidence            99999999999999986  46799999999999999999999999   99999999999999999999999999997532


Q ss_pred             -----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          170 -----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       170 -----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                 |+.|+|||++.+..|+.++|+||+||++|||++|..||....   .. .+.    .....       ..
T Consensus       157 ~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~---~~-~~~----~~i~~-------~~  221 (337)
T d1o6la_         157 SDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD---HE-RLF----ELILM-------EE  221 (337)
T ss_dssp             CTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS---HH-HHH----HHHHH-------CC
T ss_pred             cCCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcC---HH-HHH----HHHhc-------CC
Confidence                       678999999999999999999999999999999999997541   11 111    11111       11


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCC-----hhhHHh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPS-----MKCVVM  272 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~evl~  272 (274)
                      ...|...++++.+||.+||+.||++||+     +.|+++
T Consensus       222 ~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         222 IRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCCCccCCHHHHHHHHhhccCCchhhcccccccHHHHHc
Confidence            1355566788999999999999999995     778765

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-49  Score=337.54  Aligned_cols=234  Identities=20%  Similarity=0.202  Sum_probs=188.9

Q ss_pred             hhccccccCCCCCCCCcchhHHHH--------HHHHHhc---CCCCCCcHHHHHHHHhcC-CCCccceEeEEEEeCCcce
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR--------ALMATVN---SPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~--------~~~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~   89 (274)
                      ++|.....||+|+|  |.||+|..        +++|...   .....+.|.+|+++|+++ +|||||+++|+|.+++..+
T Consensus        10 ~~~~~~~~iG~G~f--g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~   87 (309)
T d1fvra_          10 NDIKFQDVIGEGNF--GQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLY   87 (309)
T ss_dssp             GGCEEEEEEECGGG--CEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEE
T ss_pred             HHcEEEEEEeeCCC--cEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeE
Confidence            57777889999999  99999921        2222222   224567789999999998 6999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhC--------------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 048314           90 TEAALDLPWDLAYIIFCS--------------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW  155 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~--------------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~  155 (274)
                      +||||+++|+|.+++...              ....+++..++.++.|++.||.|+|+.   +++||||||+|||++.++
T Consensus        88 iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~---~iiHrDlkp~NIL~~~~~  164 (309)
T d1fvra_          88 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENY  164 (309)
T ss_dssp             EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGG
T ss_pred             EEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC---CccccccccceEEEcCCC
Confidence            999999999999999753              235699999999999999999999999   999999999999999999


Q ss_pred             cEEEeccccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCC-CccccCCChhhHHHHHHHH
Q 048314          156 TAKISDFGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWE-NMEIDASKPEEIILTNWVY  224 (274)
Q Consensus       156 ~~kl~d~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~-p~~~~~~~~~~~~~~~~~~  224 (274)
                      .+||+|||+++...          +..|+|||.+....++.++|||||||++|||++|.. ||...  ....  +.    
T Consensus       165 ~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~--~~~~--~~----  236 (309)
T d1fvra_         165 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM--TCAE--LY----  236 (309)
T ss_dssp             CEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC--CHHH--HH----
T ss_pred             ceEEccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCC--CHHH--HH----
Confidence            99999999986432          678999999999999999999999999999999765 55422  1111  10    


Q ss_pred             HHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          225 KCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ..+.++     .+ .+.+...++++.+||.+||+.||++||||.||++.|
T Consensus       237 ~~i~~~-----~~-~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L  280 (309)
T d1fvra_         237 EKLPQG-----YR-LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL  280 (309)
T ss_dssp             HHGGGT-----CC-CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHhc-----CC-CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            111111     11 134556778999999999999999999999999864

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=2.6e-49  Score=344.63  Aligned_cols=235  Identities=16%  Similarity=0.143  Sum_probs=189.5

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC--CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP--YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      .++|...+.||+|+|  |.||+|.      ..++|.+...  .+.+.+.+|+.+|++++|||||++++++.+++..++||
T Consensus        28 ~d~Y~i~~~lG~G~f--g~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm  105 (352)
T d1koba_          28 YDYYDILEELGSGAF--GVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLIL  105 (352)
T ss_dssp             GGTEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             ccceEEEEEEecCCC--eEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            356888899999999  9999982      1223333222  12345678999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc--CCCcEEEeccccceecC-
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD--EFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~--~~~~~kl~d~g~~~~~~-  169 (274)
                      |||++|+|.+++.. ....+++..++.++.|++.||.|||++   +|+||||||+|||++  .++.+||+|||++.... 
T Consensus       106 E~~~gg~L~~~~~~-~~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~  181 (352)
T d1koba_         106 EFLSGGELFDRIAA-EDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP  181 (352)
T ss_dssp             ECCCCCBHHHHTTC-TTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred             EcCCCChHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccccccccccccCCCeEEEeecccceecCC
Confidence            99999999998865 445699999999999999999999999   999999999999997  67899999999997643 


Q ss_pred             ---------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCc
Q 048314          170 ---------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTE  240 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (274)
                               ++.|+|||++.+..++.++||||+||++|+|++|..||...   ... .+..    ......   .-.+..
T Consensus       182 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~---~~~-~~~~----~i~~~~---~~~~~~  250 (352)
T d1koba_         182 DEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE---DDL-ETLQ----NVKRCD---WEFDED  250 (352)
T ss_dssp             TSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS---SHH-HHHH----HHHHCC---CCCCSS
T ss_pred             CCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCC---CHH-HHHH----HHHhCC---CCCCcc
Confidence                     67899999999999999999999999999999999999643   111 1111    011110   111112


Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          241 VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       241 ~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .....+.++.+||.+||+.||++|||+.|+++
T Consensus       251 ~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         251 AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             cccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            33456678999999999999999999999986

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-49  Score=332.32  Aligned_cols=233  Identities=18%  Similarity=0.154  Sum_probs=182.5

Q ss_pred             hhccccccCCCCCCCCcchhHHH----------HHHHHHh----cCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM----------RALMATV----NSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~----------~~~~~~~----~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      ++|.....||+|+|  |.||+|.          +++|...    ......++|.+|+++|++++|||||+++|+|.+ +.
T Consensus         8 ~d~~~~~~iG~G~f--g~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~   84 (273)
T d1u46a_           8 KDLRLLEKLGDGSF--GVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PP   84 (273)
T ss_dssp             GGEEEEEECC------CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SS
T ss_pred             HHeEEEEEEecCCC--eEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cc
Confidence            56777888999999  9999982          1222111    111223568899999999999999999999975 46


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .++|||||++|++.+++.. ....+++..++.++.|++.||.|||++   +|+||||||+||+++.++.+|++|||+++.
T Consensus        85 ~~lv~e~~~~~~l~~~~~~-~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDikp~NIll~~~~~vkl~DfGl~~~  160 (273)
T d1u46a_          85 MKMVTELAPLGSLLDRLRK-HQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRA  160 (273)
T ss_dssp             CEEEEECCTTCBHHHHHHH-HGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             hheeeeeecCcchhhhhhc-ccCCCCHHHHHHHHHHHHHHHHHhhhC---CEeeeeecHHHhccccccceeeccchhhhh
Confidence            7899999999999998876 345699999999999999999999999   999999999999999999999999999986


Q ss_pred             cC--------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          168 LS--------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       168 ~~--------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      ..              +..|+|||.+....++.++||||||+++|||++ |..||...   ... .....   ....   
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~---~~~-~~~~~---i~~~---  230 (273)
T d1u46a_         161 LPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL---NGS-QILHK---IDKE---  230 (273)
T ss_dssp             CCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC---CHH-HHHHH---HHTS---
T ss_pred             cccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCc---CHH-HHHHH---HHhC---
Confidence            43              346999999999999999999999999999998 89999633   111 11111   0001   


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        -..+ +.+...+..+.+|+.+||+.||++|||+.||.+.|
T Consensus       231 --~~~~-~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L  269 (273)
T d1u46a_         231 --GERL-PRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFL  269 (273)
T ss_dssp             --CCCC-CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --CCCC-CCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence              0111 24455677899999999999999999999998865

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-49  Score=333.82  Aligned_cols=233  Identities=17%  Similarity=0.152  Sum_probs=185.9

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCC--------CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP--------YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSK   87 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~   87 (274)
                      +.|.....||+|+|  |.||+|.      ..++|.+...        ...+.+.+|+.+|++++|||||++++++.+.+.
T Consensus        10 d~Y~~~~~lG~G~f--g~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   87 (293)
T d1jksa_          10 DYYDTGEELGSGQF--AVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD   87 (293)
T ss_dssp             GTEEEEEEEEECSS--EEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             cCEEEeEEEecCCC--eEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence            45777889999999  9999982      1122222111        112457899999999999999999999999999


Q ss_pred             ceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC----cEEEeccc
Q 048314           88 PSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW----TAKISDFG  163 (274)
Q Consensus        88 ~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~----~~kl~d~g  163 (274)
                      .++|||||++|+|.+++..  .+.+++..++.++.|++.||.|||+.   +++||||||+||+++.++    .+|++|||
T Consensus        88 ~~iv~E~~~gg~L~~~i~~--~~~l~~~~~~~~~~qi~~al~yLH~~---~ivHrDiKp~Nill~~~~~~~~~vkl~DfG  162 (293)
T d1jksa_          88 VILILELVAGGELFDFLAE--KESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFG  162 (293)
T ss_dssp             EEEEEECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSSSSCCEEECCCT
T ss_pred             EEEEEEcCCCccccchhcc--ccccchhHHHHHHHHHHHHHHhhhhc---ceeecccccceEEEecCCCcccceEecchh
Confidence            9999999999999999986  35799999999999999999999999   999999999999998766    49999999


Q ss_pred             cceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          164 LAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       164 ~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ++....          ++.|+|||++....++.++|||||||++|||++|..||....   ....+.     ....... 
T Consensus       163 ~a~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~---~~~~~~-----~i~~~~~-  233 (293)
T d1jksa_         163 LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT---KQETLA-----NVSAVNY-  233 (293)
T ss_dssp             TCEECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHH-----HHHTTCC-
T ss_pred             hhhhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCC---HHHHHH-----HHHhcCC-
Confidence            987543          567999999998899999999999999999999999997431   111110     0011100 


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                        -.+...+...+..+.+|+.+||+.||++|||++|+++
T Consensus       234 --~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         234 --EFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             --CCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             --CCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence              0000112234578899999999999999999999986

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.1e-49  Score=337.77  Aligned_cols=239  Identities=19%  Similarity=0.185  Sum_probs=192.2

Q ss_pred             HHHHhhhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEE
Q 048314           17 LCTKLRNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVA   82 (274)
Q Consensus        17 l~~~~~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~   82 (274)
                      +.-.+++|...+.||+|+|  |.||+|.           .+++|.+...   ...++|.+|+.+|++++||||++++++|
T Consensus         8 ~e~p~~~~~~~~~lG~G~f--G~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~   85 (301)
T d1lufa_           8 LEYPRNNIEYVRDIGEGAF--GRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC   85 (301)
T ss_dssp             TBCCGGGCEEEEEEEECSS--CEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             ccCCHHHcEEeEEEeeCCC--eEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeee
Confidence            3345678888999999999  9999992           1223333322   1235688999999999999999999999


Q ss_pred             EeCCcceEEEEeCCCCCHHHHHHhCC----------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 048314           83 MRGSKPSTEAALDLPWDLAYIIFCSA----------------------ERNPYWNQRVRIALDVAKGILYLHDECEPPIL  140 (274)
Q Consensus        83 ~~~~~~~lv~e~~~~gsL~~~l~~~~----------------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~  140 (274)
                      .+.+..+++|||+++|+|.+++....                      ...+++..++.++.|++.||+|||+.   +++
T Consensus        86 ~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~---~iv  162 (301)
T d1lufa_          86 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFV  162 (301)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccC---CeE
Confidence            99999999999999999999997532                      23489999999999999999999999   999


Q ss_pred             cCCCCCCceEEcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcC-CC
Q 048314          141 HCDIKPQNILMDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCW-EN  206 (274)
Q Consensus       141 h~dl~~~nil~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~-~p  206 (274)
                      ||||||+|||++.++.+||+|||+++...             ++.|+|||.+....++.++|||||||++|||++|. +|
T Consensus       163 HrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p  242 (301)
T d1lufa_         163 HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQP  242 (301)
T ss_dssp             CSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred             eeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCC
Confidence            99999999999999999999999986432             45799999999999999999999999999999996 45


Q ss_pred             ccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          207 MEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      |... . ..+  +..    .+.++..      .+.|...+.++.+|+.+||+.||++||||.||+++|
T Consensus       243 ~~~~-~-~~e--~~~----~v~~~~~------~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L  296 (301)
T d1lufa_         243 YYGM-A-HEE--VIY----YVRDGNI------LACPENCPLELYNLMRLCWSKLPADRPSFCSIHRIL  296 (301)
T ss_dssp             TTTS-C-HHH--HHH----HHHTTCC------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCC-C-HHH--HHH----HHHcCCC------CCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            6432 1 111  111    1111111      134556678899999999999999999999998865

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-48  Score=330.95  Aligned_cols=229  Identities=18%  Similarity=0.123  Sum_probs=189.9

Q ss_pred             hhccccccCCCCCCCCcchhHHH-------HHHHH----HhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM-------RALMA----TVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~-------~~~~~----~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.||+|+|  |.||++.       +|+|.    ........+.+.+|+.+|++++|||||++++++.+.+..++
T Consensus         4 ~dy~i~~~lG~G~f--g~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~i   81 (316)
T d1fota_           4 QDFQILRTLGTGSF--GRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFM   81 (316)
T ss_dssp             GGEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEE
T ss_pred             hHeEEEEEEecCcC--cEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeee
Confidence            57888899999999  9999981       11111    12222345668899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      |||||.+|+|..++..  ...+++...+.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++... 
T Consensus        82 vmE~~~gg~l~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~  156 (316)
T d1fota_          82 IMDYIEGGELFSLLRK--SQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPD  156 (316)
T ss_dssp             EECCCCSCBHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSS
T ss_pred             EeeecCCccccccccc--cccccccHHHHHHHHHHHhhhhhccC---cEEccccCchheeEcCCCCEEEecCccceEecc
Confidence            9999999999999986  56789999999999999999999999   99999999999999999999999999997643 


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                             ++.|+|||++.+..++.++||||+||++|+|++|+.||....   .. .+.    ....+.       ....|
T Consensus       157 ~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~---~~-~~~----~~i~~~-------~~~~p  221 (316)
T d1fota_         157 VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN---TM-KTY----EKILNA-------ELRFP  221 (316)
T ss_dssp             CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS---HH-HHH----HHHHHC-------CCCCC
T ss_pred             ccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcC---HH-HHH----HHHHcC-------CCCCC
Confidence                   778999999999899999999999999999999999996431   11 110    001111       11344


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      ...++++.+++.+||+.||++||     |++++++
T Consensus       222 ~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         222 PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             CCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence            55667899999999999999996     8999875

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-48  Score=335.77  Aligned_cols=229  Identities=23%  Similarity=0.291  Sum_probs=184.3

Q ss_pred             cccCCCCCCCCcchhHHHH---------HHHHHhcCC---CCCCcHHHHHHHHhcCCCCccceEeEEEEe-CCcceEEEE
Q 048314           27 SSLNDRNSPRSKSVWSCMR---------ALMATVNSP---YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR-GSKPSTEAA   93 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~~~---------~~~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv~e   93 (274)
                      +.+||+|+|  |.||+|..         +++|.+...   ...++|.+|+++|++++|||||+++|+|.+ ++..++|||
T Consensus        32 ~~~iG~G~f--g~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E  109 (311)
T d1r0pa_          32 NEVIGRGHF--GCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLP  109 (311)
T ss_dssp             EEEEEEETT--EEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEE
T ss_pred             ceEEeecCC--eEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEE
Confidence            467999999  99999821         123333221   234568899999999999999999999876 467899999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      ||++|+|.+++.. ....+++..++.++.|++.||.|||+.   +++||||||+|||++.++.+||+|||+++...    
T Consensus       110 ~~~~g~l~~~~~~-~~~~~~~~~~~~i~~qia~gL~~lH~~---~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~  185 (311)
T d1r0pa_         110 YMKHGDLRNFIRN-ETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF  185 (311)
T ss_dssp             CCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTC
T ss_pred             EeecCchhhhhcc-ccccchHHHHHHHHHHHHHhhhhhccc---CcccCCccHHhEeECCCCCEEEecccchhhcccccc
Confidence            9999999999986 456688999999999999999999999   99999999999999999999999999997532    


Q ss_pred             -----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          170 -----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       170 -----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                 ++.|+|||.+....++.++||||||+++|||++|..||........   +..    ...++.      .
T Consensus       186 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~---~~~----~i~~g~------~  252 (311)
T d1r0pa_         186 DSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD---ITV----YLLQGR------R  252 (311)
T ss_dssp             CCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC---------CHH----HHHTTC------C
T ss_pred             ccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHH---HHH----HHHcCC------C
Confidence                       4579999999999999999999999999999998888764321111   001    111110      1


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ...|..+++.+.+|+.+||+.||++|||+.||++.|
T Consensus       253 ~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L  288 (311)
T d1r0pa_         253 LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRI  288 (311)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            124455677899999999999999999999999875

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-48  Score=333.03  Aligned_cols=235  Identities=17%  Similarity=0.135  Sum_probs=186.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC-CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP-YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      .++|.....||+|+|  |.||+|.      ..++|.+... .+...+.+|+++|++++|||||++++++.+++..++|||
T Consensus         4 ~~rY~i~~~lG~G~f--g~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE   81 (321)
T d1tkia_           4 YEKYMIAEDLGRGEF--GIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             TTTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             ccceEEEEEEecCCC--eEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence            356777889999999  9999982      1122333322 223346799999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC--CCcEEEeccccceecC--
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE--FWTAKISDFGLAKLLS--  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~--~~~~kl~d~g~~~~~~--  169 (274)
                      ||++|+|.+++.. ....+++..++.++.|++.||.|||+.   +|+||||||+||+++.  ...+|++|||++....  
T Consensus        82 ~~~gg~L~~~i~~-~~~~l~e~~~~~i~~qi~~al~yLH~~---~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~  157 (321)
T d1tkia_          82 FISGLDIFERINT-SAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG  157 (321)
T ss_dssp             CCCCCBHHHHHTS-SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT
T ss_pred             cCCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHc---CCCcccccccceeecCCCceEEEEcccchhhccccC
Confidence            9999999999975 344699999999999999999999999   9999999999999974  4589999999987643  


Q ss_pred             --------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCcc
Q 048314          170 --------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEV  241 (274)
Q Consensus       170 --------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
                              ++.|+|||.+.+..++.++||||+||++|+|++|..||....   ....+     ....+...   .-+...
T Consensus       158 ~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~---~~~~~-----~~i~~~~~---~~~~~~  226 (321)
T d1tkia_         158 DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET---NQQII-----ENIMNAEY---TFDEEA  226 (321)
T ss_dssp             CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS---HHHHH-----HHHHHTCC---CCCHHH
T ss_pred             CcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCC---HHHHH-----HHHHhCCC---CCChhh
Confidence                    677999999998899999999999999999999999996441   11111     10111100   000001


Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          242 DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       242 ~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ....+.++.+|+.+||+.||++|||+.|+++
T Consensus       227 ~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         227 FKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1134567899999999999999999999986

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-48  Score=330.51  Aligned_cols=234  Identities=20%  Similarity=0.205  Sum_probs=182.9

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-------------HHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEEe
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-------------ALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMR   84 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-------------~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~   84 (274)
                      ++|...+.||+|+|  |.||+|..             .++|.....   ....++.+|...+.++ +|||||+++++|.+
T Consensus        13 ~~~~l~~~iG~G~f--g~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~   90 (299)
T d1fgka_          13 DRLVLGKPLGEGAF--GQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ   90 (299)
T ss_dssp             GGEEEEEECC-------CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             HHeEEeeEEeecCC--cEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccccccc
Confidence            56666788999999  99999821             112222222   1234567899999888 79999999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceE
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNIL  150 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil  150 (274)
                      ++..++|||||.+|+|.+++....              ...+++.+++.++.|++.||.|||+.   +++||||||+|||
T Consensus        91 ~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~---~ivHrDiKp~NiL  167 (299)
T d1fgka_          91 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVL  167 (299)
T ss_dssp             SSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEE
T ss_pred             CCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC---CEEeeeeccccee
Confidence            999999999999999999997542              24589999999999999999999999   9999999999999


Q ss_pred             EcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhh-cCCCccccCCChhh
Q 048314          151 MDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETIC-CWENMEIDASKPEE  216 (274)
Q Consensus       151 ~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~-g~~p~~~~~~~~~~  216 (274)
                      ++.++.+||+|||+++...             ++.|+|||.+..+.++.++||||||+++|||++ |..||...  ....
T Consensus       168 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~--~~~~  245 (299)
T d1fgka_         168 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV--PVEE  245 (299)
T ss_dssp             ECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHH
T ss_pred             ecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCC--CHHH
Confidence            9999999999999987542             457999999999999999999999999999998 67777532  1111


Q ss_pred             HHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          217 IILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        +    .....++.      ..+.|...+..+.+|+.+||+.||++|||+.||+++|
T Consensus       246 --~----~~~i~~~~------~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L  291 (299)
T d1fgka_         246 --L----FKLLKEGH------RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  291 (299)
T ss_dssp             --H----HHHHHTTC------CCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --H----HHHHHcCC------CCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHH
Confidence              1    11111111      1134455677899999999999999999999999875

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-47  Score=330.40  Aligned_cols=229  Identities=16%  Similarity=0.110  Sum_probs=189.9

Q ss_pred             hhccccccCCCCCCCCcchhHH-------HHHHH----HHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC-------MRALM----ATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPST   90 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~-------~~~~~----~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l   90 (274)
                      ++|...+.||+|+|  |.||++       .+|+|    .........+.+.+|+++|++++|||||++++++.+....++
T Consensus        41 d~y~i~~~lG~G~f--g~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~  118 (350)
T d1rdqe_          41 DQFDRIKTLGTGSF--GRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM  118 (350)
T ss_dssp             GGEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cCeEEEEEeecCcC--cEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccc
Confidence            56788889999999  999998       11221    112222345568899999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC-
Q 048314           91 EAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS-  169 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~-  169 (274)
                      ||||+.+|+|.+++..  .+.+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++... 
T Consensus       119 v~e~~~~g~l~~~l~~--~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~  193 (350)
T d1rdqe_         119 VMEYVAGGEMFSHLRR--IGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG  193 (350)
T ss_dssp             EEECCTTCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             ccccccccchhhhHhh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCcCCHHHcccCCCCCEEeeeceeeeeccc
Confidence            9999999999999986  35799999999999999999999999   99999999999999999999999999997654 


Q ss_pred             -------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcCCccC
Q 048314          170 -------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRGTEVD  242 (274)
Q Consensus       170 -------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (274)
                             ++.|+|||++.+..++.++|||||||++|||++|..||...   .. ..+.    ......       ....+
T Consensus       194 ~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~---~~-~~~~----~~i~~~-------~~~~p  258 (350)
T d1rdqe_         194 RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD---QP-IQIY----EKIVSG-------KVRFP  258 (350)
T ss_dssp             CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS---SH-HHHH----HHHHHC-------CCCCC
T ss_pred             ccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCc---CH-HHHH----HHHhcC-------CCCCC
Confidence                   67899999999999999999999999999999999999643   11 1111    111111       11244


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCC-----ChhhHHh
Q 048314          243 KKNLENLVKVGLWCVQDEPALRP-----SMKCVVM  272 (274)
Q Consensus       243 ~~~~~~~~~li~~cl~~dp~~Rp-----s~~evl~  272 (274)
                      ...++++.+++.+||+.||.+|+     |++|+++
T Consensus       259 ~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         259 SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             TTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             ccCCHHHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence            55677899999999999999994     8999875

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-46  Score=328.91  Aligned_cols=233  Identities=21%  Similarity=0.206  Sum_probs=185.2

Q ss_pred             hhhccccccCCCCCCCCcchhHH-------HHHHH----HHhcCCCCCCcHH---HHHHHHhcCCCCccceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSC-------MRALM----ATVNSPYSPSRPL---TLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~-------~~~~~----~~~~~~~~~~~~~---~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      .++|...+.||+|+|  |.||+|       .+|+|    ...........+.   +|+++++.++|||||++++++.+.+
T Consensus         3 lddy~i~~~lG~G~f--g~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~   80 (364)
T d1omwa3           3 MNDFSVHRIIGRGGF--GEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD   80 (364)
T ss_dssp             STTEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS
T ss_pred             HHhCeeeeEEecCCC--eEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECC
Confidence            367888999999999  999998       11111    1111112222333   4577888889999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      ..++|||||++|+|.+++..  ...+++..++.++.|++.||.|||+.   +++||||||+|||++.++.+||+|||+++
T Consensus        81 ~~~ivmE~~~gg~L~~~l~~--~~~~~e~~~~~~~~qi~~aL~ylH~~---~iiHrDlKP~NILl~~~g~iKl~DFGla~  155 (364)
T d1omwa3          81 KLSFILDLMNGGDLHYHLSQ--HGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLAC  155 (364)
T ss_dssp             EEEEEECCCCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSSSCEEECCCTTCE
T ss_pred             EEEEEEEecCCCcHHHHHHh--cccccHHHHHHHHHHHHHHHHHHHHC---CccceeeccceeEEcCCCcEEEeeeceee
Confidence            99999999999999999986  45789999999999999999999999   99999999999999999999999999997


Q ss_pred             ec---------CCCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhh
Q 048314          167 LL---------SDKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLV  236 (274)
Q Consensus       167 ~~---------~~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
                      ..         +|+.|+|||++.. ..++.++|||||||++|||++|+.||.......... +        ...   ...
T Consensus       156 ~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~-~--------~~~---~~~  223 (364)
T d1omwa3         156 DFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHE-I--------DRM---TLT  223 (364)
T ss_dssp             ECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHH-H--------HHH---SSS
T ss_pred             ecCCCcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHH-H--------HHh---ccc
Confidence            54         3778999999875 468999999999999999999999997542221110 0        000   001


Q ss_pred             cCCccCHHHHHHHHHHHHHhhccCCCCCCC-----hhhHHh
Q 048314          237 RGTEVDKKNLENLVKVGLWCVQDEPALRPS-----MKCVVM  272 (274)
Q Consensus       237 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~evl~  272 (274)
                      .+...+...++++.+||.+||+.||++|||     ++|+++
T Consensus       224 ~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         224 MAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence            111345556788999999999999999999     678765

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=3.4e-47  Score=321.02  Aligned_cols=233  Identities=16%  Similarity=0.183  Sum_probs=186.6

Q ss_pred             hhccccccCCCCCCCCcchhHHHH------HHHHHhcCC-CC----------CCcHHHHHHHHhcCC-CCccceEeEEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR------ALMATVNSP-YS----------PSRPLTLTSIVSRVS-WTTDIEVSSVAM   83 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~------~~~~~~~~~-~~----------~~~~~~e~~~l~~l~-h~niv~l~~~~~   83 (274)
                      ++|...+.||+|+|  |.||+|..      .++|.+... ..          .+.+.+|+.++++++ |||||++++++.
T Consensus         3 ~~y~~~~~iG~G~~--g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~   80 (277)
T d1phka_           3 ENYEPKEILGRGVS--SVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   80 (277)
T ss_dssp             TTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             ccCEEceEEecCcC--eEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Confidence            56777899999999  99999921      112222211 11          124778999999997 999999999999


Q ss_pred             eCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccc
Q 048314           84 RGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFG  163 (274)
Q Consensus        84 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g  163 (274)
                      +++..+||||||++|+|.+++..  .+.+++..++.++.|++.||.|||++   +++||||||+||+++.++.+||+|||
T Consensus        81 ~~~~~~ivmE~~~~g~L~~~l~~--~~~l~e~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~~kl~DFG  155 (277)
T d1phka_          81 TNTFFFLVFDLMKKGELFDYLTE--KVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFG  155 (277)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             cCcceEEEEEcCCCchHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHc---CCcccccccceEEEcCCCCeEEccch
Confidence            99999999999999999999986  45799999999999999999999999   99999999999999999999999999


Q ss_pred             cceecC----------CCCcCCCccccc------CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHH
Q 048314          164 LAKLLS----------DKGCMAPECYKR------TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCF  227 (274)
Q Consensus       164 ~~~~~~----------~~~~~ape~~~~------~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~  227 (274)
                      +++...          ++.|+|||.+..      ..++.++||||+||++|+|++|+.||....   ... ..    ...
T Consensus       156 ~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~---~~~-~~----~~i  227 (277)
T d1phka_         156 FSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK---QML-ML----RMI  227 (277)
T ss_dssp             TCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS---HHH-HH----HHH
T ss_pred             heeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCC---HHH-HH----HHH
Confidence            997643          567999998853      346889999999999999999999997431   111 11    111


Q ss_pred             hhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          228 INRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .++...   .+.+.....++++.+++.+||+.||++|||++||++
T Consensus       228 ~~~~~~---~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         228 MSGNYQ---FGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             HHTCCC---CCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             HhCCCC---CCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            111111   111233456788999999999999999999999986

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-47  Score=330.01  Aligned_cols=237  Identities=14%  Similarity=0.119  Sum_probs=183.2

Q ss_pred             hhhcccc-ccCCCCCCCCcchhHHHH------HHHHHhcCCCCCCcHHHHHHHHhcC-CCCccceEeEEEEe----CCcc
Q 048314           21 LRNFCRS-SLNDRNSPRSKSVWSCMR------ALMATVNSPYSPSRPLTLTSIVSRV-SWTTDIEVSSVAMR----GSKP   88 (274)
Q Consensus        21 ~~~f~~~-~~~g~g~~~~g~vy~~~~------~~~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~----~~~~   88 (274)
                      .++|... .+||+|+|  |.||+|..      .++|.+.   ..+.+.+|+.++.++ +|||||++++++.+    +...
T Consensus        10 ~~~y~i~~~~lG~G~f--g~Vy~a~~~~~~~~vAiK~i~---~~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~   84 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGIN--GKVLQIFNKRTQEKFALKMLQ---DCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL   84 (335)
T ss_dssp             GGTEEEEEEEEEECSS--CEEEEEEETTTCCEEEEEEEE---CSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccCEEEeeEEeeeccC--eEEEEEEECCCCCEEEEEEEC---CcHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEE
Confidence            3577654 57999999  99999921      1122222   345577999987654 79999999999865    4568


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEeccccc
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKISDFGLA  165 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~d~g~~  165 (274)
                      ++|||||++|+|.+++.......+++..++.++.|++.||.|||+.   +|+||||||+||+++.   .+.+||+|||++
T Consensus        85 ~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~---~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a  161 (335)
T d2ozaa1          85 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFA  161 (335)
T ss_dssp             EEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             EEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHc---CCcccccccccccccccccccccccccccee
Confidence            9999999999999999875456799999999999999999999999   9999999999999975   567999999999


Q ss_pred             eecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh
Q 048314          166 KLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL  235 (274)
Q Consensus       166 ~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      +...          ++.|+|||++.+..|+.++|||||||++|+|++|+.||...........+    ....   .....
T Consensus       162 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~----~~~i---~~~~~  234 (335)
T d2ozaa1         162 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGM----KTRI---RMGQY  234 (335)
T ss_dssp             EECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC------------CC---CSCSS
T ss_pred             eeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHH----HHHH---hcCCC
Confidence            7532          77899999999989999999999999999999999999754221110000    0000   00000


Q ss_pred             hcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 VRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      -.+.......++++.+|+.+||+.||++|||+.|+++
T Consensus       235 ~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         235 EFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  271 (335)
T ss_dssp             SCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            0011112345678999999999999999999999976

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.4e-47  Score=322.38  Aligned_cols=234  Identities=16%  Similarity=0.172  Sum_probs=183.8

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCC-----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCC----
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP-----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS----   86 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----   86 (274)
                      ++|...+.||+|+|  |.||+|.      ..++|.+...     ...+++.+|+.+|++++|||||++++++.+.+    
T Consensus         7 drY~i~~~lG~G~f--g~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~   84 (277)
T d1o6ya_           7 DRYELGEILGFGGM--SEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGP   84 (277)
T ss_dssp             TTEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSE
T ss_pred             ceeEEeEEEeeCCC--eEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCc
Confidence            56888899999999  9999992      1122322221     11235779999999999999999999987643    


Q ss_pred             cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccce
Q 048314           87 KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAK  166 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~  166 (274)
                      .+++|||||++|+|.+++..  .+.+++..++.++.|++.||.|||++   +++||||||+||+++.++..+++|||.+.
T Consensus        85 ~~~lvmE~~~g~~L~~~~~~--~~~l~~~~~~~i~~qi~~al~~lH~~---~iiHrDiKP~NIll~~~~~~~l~d~~~~~  159 (277)
T d1o6ya_          85 LPYIVMEYVDGVTLRDIVHT--EGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIAR  159 (277)
T ss_dssp             EEEEEEECCCEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTSCEEECCCTTCE
T ss_pred             eEEEEEECCCCCEehhhhcc--cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCccccCcccccCccccceeehhhhhh
Confidence            37899999999999999976  45799999999999999999999999   99999999999999999999999999875


Q ss_pred             ec--------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhh
Q 048314          167 LL--------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINREL  232 (274)
Q Consensus       167 ~~--------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      ..              +++.|+|||++.+..++.++||||+||++|||++|..||...   .....+    ........ 
T Consensus       160 ~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~---~~~~~~----~~~~~~~~-  231 (277)
T d1o6ya_         160 AIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD---SPVSVA----YQHVREDP-  231 (277)
T ss_dssp             ECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS---SHHHHH----HHHHHCCC-
T ss_pred             hhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCc---CHHHHH----HHHHhcCC-
Confidence            43              267899999999889999999999999999999999999643   111111    11111111 


Q ss_pred             hhhhcCCccCHHHHHHHHHHHHHhhccCCCCCC-ChhhHHhh
Q 048314          233 NKLVRGTEVDKKNLENLVKVGLWCVQDEPALRP-SMKCVVMM  273 (274)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-s~~evl~~  273 (274)
                         ..+.......++++.+++.+||+.||++|| |++++++.
T Consensus       232 ---~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~  270 (277)
T d1o6ya_         232 ---IPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRAD  270 (277)
T ss_dssp             ---CCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHH
T ss_pred             ---CCCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHH
Confidence               111122334567899999999999999999 78888764

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-47  Score=325.08  Aligned_cols=229  Identities=18%  Similarity=0.128  Sum_probs=186.4

Q ss_pred             hhccccccCCCCCCCCcchhHH-------HHHHHH----HhcCCCCCCcHHHHHHHHh-cCCCCccceEeEEEEeCCcce
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSC-------MRALMA----TVNSPYSPSRPLTLTSIVS-RVSWTTDIEVSSVAMRGSKPS   89 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~-------~~~~~~----~~~~~~~~~~~~~e~~~l~-~l~h~niv~l~~~~~~~~~~~   89 (274)
                      ++|...+.||+|+|  |.||+|       .+|+|.    ........+.+..|..++. .++|||||++++++.+++..+
T Consensus         2 ddy~i~~~iG~G~f--g~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~y   79 (320)
T d1xjda_           2 EDFILHKMLGKGSF--GKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLF   79 (320)
T ss_dssp             TTEEEEEEEEECSS--SEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred             CCeEEeeEEecCCC--cEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCcee
Confidence            46777889999999  999999       112211    1122234456677887766 689999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC
Q 048314           90 TEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS  169 (274)
Q Consensus        90 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~  169 (274)
                      +|||||++|+|.+++..  ...+++..++.++.|++.||.|||++   +++||||||+|||++.++.+|++|||+++...
T Consensus        80 ivmEy~~~g~L~~~i~~--~~~~~e~~~~~~~~qi~~al~ylH~~---~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~  154 (320)
T d1xjda_          80 FVMEYLNGGDLMYHIQS--CHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENM  154 (320)
T ss_dssp             EEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred             EEEeecCCCcHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCcccceeecCCCceeccccchhhhcc
Confidence            99999999999999986  45789999999999999999999999   99999999999999999999999999987432


Q ss_pred             -----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhhhcC
Q 048314          170 -----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKLVRG  238 (274)
Q Consensus       170 -----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (274)
                                 ++.|+|||++.+..++.++||||+||++|+|++|+.||...   .... +.    .....       ..
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~---~~~~-~~----~~i~~-------~~  219 (320)
T d1xjda_         155 LGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ---DEEE-LF----HSIRM-------DN  219 (320)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS---SHHH-HH----HHHHH-------CC
T ss_pred             cccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCC---CHHH-HH----HHHHc-------CC
Confidence                       67799999999999999999999999999999999999643   1111 11    11111       11


Q ss_pred             CccCHHHHHHHHHHHHHhhccCCCCCCChh-hHHh
Q 048314          239 TEVDKKNLENLVKVGLWCVQDEPALRPSMK-CVVM  272 (274)
Q Consensus       239 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~-evl~  272 (274)
                      ...|...++.+.+|+.+||+.||++|||+. |+++
T Consensus       220 ~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         220 PFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             CCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             CCCCccCCHHHHHHHHHhcccCCCCCcCHHHHHHh
Confidence            134555677899999999999999999995 6754

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-47  Score=329.46  Aligned_cols=236  Identities=17%  Similarity=0.199  Sum_probs=187.7

Q ss_pred             hhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEEeCC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRGS   86 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~   86 (274)
                      ++|...+.||+|+|  |.||+|.           ..++|.+...   .....|.+|+.+++++ +|||||+++|+|.+.+
T Consensus        23 ~~~~l~~~iG~G~f--g~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~  100 (311)
T d1t46a_          23 NRLSFGKTLGAGAF--GKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (311)
T ss_dssp             GGEEEEEEEEECSS--EEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHeEEeeEEeecCC--eEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCC
Confidence            56666789999999  9999982           1223333221   2234578999999999 6999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhCC----------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceE
Q 048314           87 KPSTEAALDLPWDLAYIIFCSA----------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNIL  150 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~~----------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil  150 (274)
                      ..++|||||++|+|.+++....                ...+++..+..++.|++.||.|||++   +++||||||+||+
T Consensus       101 ~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHrDLKp~NIl  177 (311)
T d1t46a_         101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNIL  177 (311)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEE
T ss_pred             EEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---Ceeeccccccccc
Confidence            9999999999999999998642                22589999999999999999999999   9999999999999


Q ss_pred             EcCCCcEEEeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhH
Q 048314          151 MDEFWTAKISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEI  217 (274)
Q Consensus       151 ~~~~~~~kl~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~  217 (274)
                      ++.++.++++|||.++...             ++.|+|||.+....++.++||||||+++|||+++..|+......... 
T Consensus       178 ~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~-  256 (311)
T d1t46a_         178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK-  256 (311)
T ss_dssp             EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH-
T ss_pred             ccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHH-
Confidence            9999999999999997543             56799999999999999999999999999999955554322122111 


Q ss_pred             HHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          218 ILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                       +..    ....+     . ....+...+..+.+||.+||+.||++|||++||+++|
T Consensus       257 -~~~----~i~~~-----~-~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L  302 (311)
T d1t46a_         257 -FYK----MIKEG-----F-RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI  302 (311)
T ss_dssp             -HHH----HHHHT-----C-CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -HHH----HHhcC-----C-CCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence             111    11111     1 1124445678899999999999999999999999875

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-47  Score=324.09  Aligned_cols=235  Identities=22%  Similarity=0.291  Sum_probs=188.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH-----------HHHHHhcCCCC---CCcHHHHHHHHhcCCCCccceEeEEEEeCC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR-----------ALMATVNSPYS---PSRPLTLTSIVSRVSWTTDIEVSSVAMRGS   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~-----------~~~~~~~~~~~---~~~~~~e~~~l~~l~h~niv~l~~~~~~~~   86 (274)
                      .++|...+.||+|+|  |.||+|..           .++|.+.....   ...|.+|++++++++|||||+++|+|...+
T Consensus        19 ~~~~~l~~~lG~G~f--G~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~   96 (308)
T d1p4oa_          19 REKITMSRELGQGSF--GMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   96 (308)
T ss_dssp             GGGEEEEEEEEECSS--SEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS
T ss_pred             HHHeEEeeEEeeCCC--eEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCC
Confidence            367777888999999  99998821           22333332211   234789999999999999999999999999


Q ss_pred             cceEEEEeCCCCCHHHHHHhC--------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 048314           87 KPSTEAALDLPWDLAYIIFCS--------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK  158 (274)
Q Consensus        87 ~~~lv~e~~~~gsL~~~l~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~k  158 (274)
                      ..++|||||++|+|.+++...        ....+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+|
T Consensus        97 ~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~---~ivHrDlk~~NiLld~~~~~K  173 (308)
T d1p4oa_          97 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK  173 (308)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEE
T ss_pred             ceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeeceEcCCceeecCCceEE
Confidence            999999999999999998743        113479999999999999999999999   999999999999999999999


Q ss_pred             EeccccceecC-------------CCCcCCCcccccCCCccccceeehhHhHHHHhhcC-CCccccCCChhhHHHHHHHH
Q 048314          159 ISDFGLAKLLS-------------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCW-ENMEIDASKPEEIILTNWVY  224 (274)
Q Consensus       159 l~d~g~~~~~~-------------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~-~p~~~~~~~~~~~~~~~~~~  224 (274)
                      |+|||+++...             ++.|+|||.+....++.++||||||+++|||++|. .||... .. .+ .+     
T Consensus       174 l~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~-~~-~~-~~-----  245 (308)
T d1p4oa_         174 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL-SN-EQ-VL-----  245 (308)
T ss_dssp             ECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-CH-HH-HH-----
T ss_pred             EeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCC-CH-HH-HH-----
Confidence            99999987432             57799999999999999999999999999999985 555422 11 11 00     


Q ss_pred             HHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          225 KCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      ....++..      ...+..++..+.+++.+||+.||++|||+.+|+++|
T Consensus       246 ~~i~~~~~------~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L  289 (308)
T d1p4oa_         246 RFVMEGGL------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSI  289 (308)
T ss_dssp             HHHHTTCC------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHhCCC------CCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            11111111      124556678899999999999999999999999865

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-48  Score=328.57  Aligned_cols=236  Identities=17%  Similarity=0.195  Sum_probs=179.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHH-----------HHHHHHhcCC---CCCCcHHHHHHHHhcC-CCCccceEeEEEEeC
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM-----------RALMATVNSP---YSPSRPLTLTSIVSRV-SWTTDIEVSSVAMRG   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~-----------~~~~~~~~~~---~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~   85 (274)
                      .++|...+.||+|+|  |.||+|.           ..++|.+...   ...+.+.+|..++.++ +|+|||++++++.+.
T Consensus        12 ~~~y~~~~~iG~G~f--G~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~   89 (299)
T d1ywna1          12 RDRLKLGKPLGRGAF--GQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKP   89 (299)
T ss_dssp             GGGEEEEEEEEECSS--CEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST
T ss_pred             HHHEEEeeEEeecCC--eEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccC
Confidence            357888899999999  9999982           1122222211   2234567888888877 589999999998764


Q ss_pred             -CcceEEEEeCCCCCHHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceE
Q 048314           86 -SKPSTEAALDLPWDLAYIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNIL  150 (274)
Q Consensus        86 -~~~~lv~e~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil  150 (274)
                       +..++|||||++|+|.+++....              ...+++..++.++.|++.||.|||++   +|+||||||+|||
T Consensus        90 ~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~ivHrDlKp~NIL  166 (299)
T d1ywna1          90 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNIL  166 (299)
T ss_dssp             TSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEE
T ss_pred             CCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC---CCcCCcCCcccee
Confidence             46899999999999999997532              23489999999999999999999999   9999999999999


Q ss_pred             EcCCCcEEEeccccceec-------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcC-CCccccCCChhh
Q 048314          151 MDEFWTAKISDFGLAKLL-------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCW-ENMEIDASKPEE  216 (274)
Q Consensus       151 ~~~~~~~kl~d~g~~~~~-------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~-~p~~~~~~~~~~  216 (274)
                      ++.++.+||+|||+++..             +++.|+|||++....++.++|||||||++|||++|. .||........ 
T Consensus       167 l~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~-  245 (299)
T d1ywna1         167 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-  245 (299)
T ss_dssp             ECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHH-
T ss_pred             ECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHH-
Confidence            999999999999998643             256799999999999999999999999999999875 56654322111 


Q ss_pred             HHHHHHHHHHHhhhhhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          217 IILTNWVYKCFINRELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                        +.    .....+.     . ...+...++++.+++.+||+.||++|||++||+++|
T Consensus       246 --~~----~~~~~~~-----~-~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L  291 (299)
T d1ywna1         246 --FC----RRLKEGT-----R-MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  291 (299)
T ss_dssp             --HH----HHHHHTC-----C-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --HH----HHHhcCC-----C-CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence              11    1111111     1 124556678899999999999999999999999875

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-47  Score=327.80  Aligned_cols=246  Identities=18%  Similarity=0.140  Sum_probs=177.8

Q ss_pred             hccccccCCCCCCCCcchhHHH----HHHHHHhcCCCCCCcHHH--HHHHHhcCCCCccceEeEEEEeCC----cceEEE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM----RALMATVNSPYSPSRPLT--LTSIVSRVSWTTDIEVSSVAMRGS----KPSTEA   92 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~----~~~~~~~~~~~~~~~~~~--e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~   92 (274)
                      ++--...||+|+|  |.||+|.    .+++|.+.. ...+.+..  |+..+.+++|||||+++|+|.+.+    .+++||
T Consensus         4 ~~~l~~~iG~G~f--g~Vy~~~~~g~~vAvK~~~~-~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~   80 (303)
T d1vjya_           4 TIVLQESIGKGRF--GEVWRGKWRGEEVAVKIFSS-REERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GEEEEEEEECCSS--SEEEEEEETTEEEEEEEECG-GGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             EEEEEEEEeeCCC--eEEEEEEECCEEEEEEEECc-cchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEE
Confidence            3444567999999  9999982    222232222 12333444  455556789999999999997643    579999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----CCCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~-----~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      |||++|+|.+++.+   ..++|..++.++.|++.||.|+|+..     ..+|+||||||+|||++.++.+||+|||+++.
T Consensus        81 Ey~~~g~L~~~l~~---~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~  157 (303)
T d1vjya_          81 DYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  157 (303)
T ss_dssp             ECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             ecccCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCcccc
Confidence            99999999999986   36999999999999999999999621     13899999999999999999999999998864


Q ss_pred             c---------------CCCCcCCCcccccC------CCccccceeehhHhHHHHhhcCCCccccCCChh---hHHHHHHH
Q 048314          168 L---------------SDKGCMAPECYKRT------PISVKADVYGYGIVLLETICCWENMEIDASKPE---EIILTNWV  223 (274)
Q Consensus       168 ~---------------~~~~~~ape~~~~~------~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~---~~~~~~~~  223 (274)
                      .               +++.|+|||++...      .++.++|||||||++|||++|..|+........   ........
T Consensus       158 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~  237 (303)
T d1vjya_         158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS  237 (303)
T ss_dssp             EETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred             ccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccch
Confidence            3               26789999988654      257789999999999999999988754311110   00000000


Q ss_pred             HHHHhhhhhhhhhcCC----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhhC
Q 048314          224 YKCFINRELNKLVRGT----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMML  274 (274)
Q Consensus       224 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~L  274 (274)
                      .............++.    ..+......+.+++.+||+.||++|||+.||+++|
T Consensus       238 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L  292 (303)
T d1vjya_         238 VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTL  292 (303)
T ss_dssp             HHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHH
Confidence            0000111111112211    12345667899999999999999999999998865

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-46  Score=318.21  Aligned_cols=235  Identities=18%  Similarity=0.123  Sum_probs=177.8

Q ss_pred             cccCCCCCCCCcchhHH------HHHHHHHhcC-------CCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEEE
Q 048314           27 SSLNDRNSPRSKSVWSC------MRALMATVNS-------PYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEAA   93 (274)
Q Consensus        27 ~~~~g~g~~~~g~vy~~------~~~~~~~~~~-------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e   93 (274)
                      ..+||+|+|  |.||+|      ...++|.+..       ....+.+.+|+.+|++++|||||++++++.+++..++|||
T Consensus         3 l~~lG~G~f--g~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE   80 (299)
T d1ua2a_           3 LDFLGEGQF--ATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFD   80 (299)
T ss_dssp             EEEEEEETT--EEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEE
T ss_pred             ceEeccCcC--eEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhh
Confidence            357999999  999998      1111221111       1124567899999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC----
Q 048314           94 LDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS----  169 (274)
Q Consensus        94 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~----  169 (274)
                      ||.++++.....  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||.++...    
T Consensus        81 ~~~~~~~~~~~~--~~~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~  155 (299)
T d1ua2a_          81 FMETDLEVIIKD--NSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR  155 (299)
T ss_dssp             CCSEEHHHHHTT--CCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC
T ss_pred             hhcchHHhhhhh--cccCCCHHHHHHHHHHHHHHHHHhhcc---ceecccCCcceEEecCCCccccccCccccccCCCcc
Confidence            999877766654  356799999999999999999999999   99999999999999999999999999986432    


Q ss_pred             -------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhhhh------
Q 048314          170 -------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELNKL------  235 (274)
Q Consensus       170 -------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  235 (274)
                             ++.|+|||++... .++.++|||||||++|||++|..||...   .. ......+............      
T Consensus       156 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~---~~-~~~l~~i~~~~~~~~~~~~~~~~~~  231 (299)
T d1ua2a_         156 AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD---SD-LDQLTRIFETLGTPTEEQWPDMCSL  231 (299)
T ss_dssp             CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS---SH-HHHHHHHHHHHCCCCTTTSSSTTSS
T ss_pred             cccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCC---CH-HHHHHHHHHhcCCCChhhccchhcc
Confidence                   6789999988754 5799999999999999999999999643   11 1111111111100000000      


Q ss_pred             ---hc--CC-cc-----CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 ---VR--GT-EV-----DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ---~~--~~-~~-----~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         ..  .. ..     ....++++.+|+.+||+.||++|||+.|+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         232 PDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             TTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             chhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence               00  00 01     1233578999999999999999999999986

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-46  Score=318.72  Aligned_cols=242  Identities=18%  Similarity=0.153  Sum_probs=183.6

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ++|...+.||+|+|  |.||+|.      ..++|.+.    .....+.+.+|+++|++++|||||++++++.+++..++|
T Consensus         2 d~Y~~~~~lG~G~f--g~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv   79 (298)
T d1gz8a_           2 ENFQKVEKIGEGTY--GVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV   79 (298)
T ss_dssp             TTEEEEEEEEECSS--SEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCCEeccEEecCcC--eEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEE
Confidence            57888899999999  9999991      11222221    112356678999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec---
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL---  168 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~---  168 (274)
                      |||+.+ ++.+++.......+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+|++|||.++..   
T Consensus        80 ~e~~~~-~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~---~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~  155 (298)
T d1gz8a_          80 FEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP  155 (298)
T ss_dssp             EECCSE-EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCC
T ss_pred             EeecCC-chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcC---CEEccccCchheeecccCcceeccCCcceeccCC
Confidence            999975 556666554667799999999999999999999999   9999999999999999999999999998543   


Q ss_pred             --------CCCCcCCCcccccCC-CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHh--hhhhhhh--
Q 048314          169 --------SDKGCMAPECYKRTP-ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFI--NRELNKL--  235 (274)
Q Consensus       169 --------~~~~~~ape~~~~~~-~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--  235 (274)
                              +++.|+|||.+.... ++.++|+||+||++|+|++|+.||....   ....+.........  .......  
T Consensus       156 ~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~  232 (298)
T d1gz8a_         156 VRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDS---EIDQLFRIFRTLGTPDEVVWPGVTS  232 (298)
T ss_dssp             SBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSS---HHHHHHHHHHHHCCCCTTTSTTGGG
T ss_pred             cccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCC---HHHHHHHHHHhcCCCchhhcccccc
Confidence                    267899999877665 4789999999999999999999996431   11111111100000  0000000  


Q ss_pred             ----hcC---C------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          236 ----VRG---T------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       236 ----~~~---~------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                          ...   .      ......+.++.+|+.+||+.||++|||+.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~  282 (298)
T d1gz8a_         233 MPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA  282 (298)
T ss_dssp             STTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence                000   0      011133468899999999999999999999986

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-46  Score=314.05  Aligned_cols=223  Identities=22%  Similarity=0.230  Sum_probs=181.4

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcC--------CCCCCcHHHHHHHHhcCC--CCccceEeEEEEeC
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNS--------PYSPSRPLTLTSIVSRVS--WTTDIEVSSVAMRG   85 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~--------~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~   85 (274)
                      ++|...+.||+|+|  |.||+|.      ..++|.+..        .....++.+|+.+|++++  |||||++++++.++
T Consensus         4 ~~Y~i~~~lG~G~f--g~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~   81 (273)
T d1xwsa_           4 SQYQVGPLLGSGGF--GSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP   81 (273)
T ss_dssp             TTEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred             CeEEEeEEEeeCCC--eEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeC
Confidence            46788899999999  9999982      112222211        123455789999999987  89999999999999


Q ss_pred             CcceEEEEeCCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEeccc
Q 048314           86 SKPSTEAALDLP-WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKISDFG  163 (274)
Q Consensus        86 ~~~~lv~e~~~~-gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~d~g  163 (274)
                      +..++||||+.+ +++.+++..  ...+++..++.++.|++.||.|||+.   +|+||||||+||+++. ++.+||+|||
T Consensus        82 ~~~~lv~e~~~~~~~l~~~~~~--~~~l~e~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NIll~~~~~~vkl~DFG  156 (273)
T d1xwsa_          82 DSFVLILERPEPVQDLFDFITE--RGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFG  156 (273)
T ss_dssp             SEEEEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred             CeEEEEEEeccCcchHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccccCcccceEEecCCCeEEECccc
Confidence            999999999965 688888875  45799999999999999999999999   9999999999999985 4799999999


Q ss_pred             cceecC---------CCCcCCCcccccCCC-ccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          164 LAKLLS---------DKGCMAPECYKRTPI-SVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       164 ~~~~~~---------~~~~~ape~~~~~~~-~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                      ++....         |+.|+|||++....+ +.++||||+||++|||++|+.||...    ..          ....   
T Consensus       157 ~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~----~~----------i~~~---  219 (273)
T d1xwsa_         157 SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----EE----------IIRG---  219 (273)
T ss_dssp             TCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----HH----------HHHC---
T ss_pred             cceecccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCc----hH----------Hhhc---
Confidence            987543         678999999987665 67899999999999999999999632    10          0000   


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                          ....+...++++.+++.+||+.||++|||++|+++
T Consensus       220 ----~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         220 ----QVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             ----CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ----ccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence                01233345678999999999999999999999986

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-46  Score=316.45  Aligned_cols=243  Identities=16%  Similarity=0.140  Sum_probs=183.5

Q ss_pred             HhhhccccccCCCCCCCCcchhHHH-------HHHHHHhc----CCCCCCcHHHHHHHHhcC---CCCccceEeEEEEe-
Q 048314           20 KLRNFCRSSLNDRNSPRSKSVWSCM-------RALMATVN----SPYSPSRPLTLTSIVSRV---SWTTDIEVSSVAMR-   84 (274)
Q Consensus        20 ~~~~f~~~~~~g~g~~~~g~vy~~~-------~~~~~~~~----~~~~~~~~~~e~~~l~~l---~h~niv~l~~~~~~-   84 (274)
                      .-++|...+.||+|+|  |.||+|.       .+++|.+.    .......+.+|+.+|+.+   +||||++++++|.. 
T Consensus         5 ~~~~Y~i~~~LG~G~f--g~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~   82 (305)
T d1blxa_           5 ADQQYECVAEIGEGAY--GKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS   82 (305)
T ss_dssp             GGGTEEEEEEEEEETT--EEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred             CcCCEEEEEEEecccC--eEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccc
Confidence            4568888999999999  9999982       11223222    112344567888887765   79999999999853 


Q ss_pred             ----CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 048314           85 ----GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKIS  160 (274)
Q Consensus        85 ----~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~  160 (274)
                          ....+++|||+.++++...... ....+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+|++
T Consensus        83 ~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~yLH~~---~ivHrDiKp~NILi~~~~~~kl~  158 (305)
T d1blxa_          83 RTDRETKLTLVFEHVDQDLTTYLDKV-PEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLA  158 (305)
T ss_dssp             ECSSEEEEEEEEECCSCBHHHHHHHS-CTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEEC
T ss_pred             ccccCceEEEEEEeccCCchhhhhhc-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEecCCCccEEEEcCCCCeeec
Confidence                3467999999988766555443 567799999999999999999999999   99999999999999999999999


Q ss_pred             ccccceecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh-
Q 048314          161 DFGLAKLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN-  229 (274)
Q Consensus       161 d~g~~~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-  229 (274)
                      |||.+....          |+.|+|||++....++.++||||+||++|||++|..||...   .....+.... ..... 
T Consensus       159 dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~---~~~~~~~~i~-~~~~~~  234 (305)
T d1blxa_         159 DFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS---SDVDQLGKIL-DVIGLP  234 (305)
T ss_dssp             SCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS---SHHHHHHHHH-HHHCCC
T ss_pred             chhhhhhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCC---CHHHHHHHHH-HhhCCC
Confidence            999986532          78899999999999999999999999999999999999643   1111111111 11000 


Q ss_pred             --hhhh-------hhh-cCC-----ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          230 --RELN-------KLV-RGT-----EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       230 --~~~~-------~~~-~~~-----~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                        ....       ... ...     ..+...++.+.+|+.+||+.||++|||++|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~  292 (305)
T d1blxa_         235 GEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  292 (305)
T ss_dssp             CGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             chhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence              0000       000 000     123344678899999999999999999999986

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=5.4e-45  Score=309.19  Aligned_cols=240  Identities=18%  Similarity=0.145  Sum_probs=183.9

Q ss_pred             hhccccccCCCCCCCCcchhHHHH-----HHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCMR-----ALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTEA   92 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~~-----~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~   92 (274)
                      ++|...+.||+|+|  |.||+|..     .++|.+...    ...+++.+|+.+|++++|||||++++++.+.+..++++
T Consensus         2 ~~Y~~~~~iG~G~f--g~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~   79 (286)
T d1ob3a_           2 EKYHGLEKIGEGTY--GVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVF   79 (286)
T ss_dssp             CSEEEEEEEEEETT--EEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             CCceeccEEecCCC--cEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEE
Confidence            46777888999999  99999921     122222221    23456889999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC---
Q 048314           93 ALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS---  169 (274)
Q Consensus        93 e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~---  169 (274)
                      |++.++.+..+..  ..+.+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+|++|||.+....   
T Consensus        80 e~~~~~~~~~~~~--~~~~l~~~~~~~i~~qi~~~L~~LH~~---~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~  154 (286)
T d1ob3a_          80 EHLDQDLKKLLDV--CEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPV  154 (286)
T ss_dssp             ECCSEEHHHHHHT--STTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC--
T ss_pred             EeehhhhHHHHHh--hcCCcchhhhHHHHHHHHHHHHHhccC---cEEecCCCCceeeEcCCCCEEecccccceecccCc
Confidence            9998776666654  356799999999999999999999999   99999999999999999999999999986432   


Q ss_pred             --------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh---hhhh---h
Q 048314          170 --------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN---RELN---K  234 (274)
Q Consensus       170 --------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~  234 (274)
                              ++.|+|||.+... .++.++|+||+||++|||++|+.||....   ....+.... .....   ....   .
T Consensus       155 ~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~---~~~~~~~i~-~~~~~~~~~~~~~~~~  230 (286)
T d1ob3a_         155 RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS---EADQLMRIF-RILGTPNSKNWPNVTE  230 (286)
T ss_dssp             -------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS---HHHHHHHHH-HHHCCCCTTTSTTGGG
T ss_pred             cccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCC---HHHHHHHHH-HhhCCCChhhccchhh
Confidence                    5679999998754 56899999999999999999999996431   111111111 10000   0000   0


Q ss_pred             h------hc---C---CccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          235 L------VR---G---TEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       235 ~------~~---~---~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .      ..   +   .......+..+.+++.+||+.||++|||++|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         231 LPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             STTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            0      00   0   0122344578899999999999999999999986

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-44  Score=310.46  Aligned_cols=240  Identities=16%  Similarity=0.083  Sum_probs=176.7

Q ss_pred             hccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeEEEEeC------CcceE
Q 048314           23 NFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMRG------SKPST   90 (274)
Q Consensus        23 ~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~~~~l   90 (274)
                      +|...++||+|+|  |.||+|.      ..++|.+..  +.....+|+++|++++|||||++++++...      ...+|
T Consensus        21 ~Y~~~k~LG~G~f--g~Vy~a~~~~~~~~vAiK~i~~--~~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          21 SYTDTKVIGNGSF--GVVYQAKLCDSGELVAIKKVLQ--DKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEETTTCCEEEEEEEEC--CSSSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             CcEeeeEEeeCcC--eEEEEEEECCCCCEEEEEEECc--cchHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence            5777889999999  9999982      122233322  334456899999999999999999998643      34789


Q ss_pred             EEEeCCCCCHHHHHHh-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEeccccceec
Q 048314           91 EAALDLPWDLAYIIFC-SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKISDFGLAKLL  168 (274)
Q Consensus        91 v~e~~~~gsL~~~l~~-~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~d~g~~~~~  168 (274)
                      |||||+++.+...... .....+++..++.++.|++.||.|||++   +|+||||||+|||++.++ .+||+|||++...
T Consensus        97 v~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~---~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~  173 (350)
T d1q5ka_          97 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL  173 (350)
T ss_dssp             EEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTTCCEEECCCTTCEEC
T ss_pred             EEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhc---CCcccCCCcceEEEecCCCceeEecccchhhc
Confidence            9999987644443321 1456799999999999999999999999   999999999999998765 8999999998754


Q ss_pred             C----------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH------Hhhhh
Q 048314          169 S----------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC------FINRE  231 (274)
Q Consensus       169 ~----------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~------~~~~~  231 (274)
                      .          +..|+|||.+.. ..++.++||||+||++|||++|..||....   ....+.......      .....
T Consensus       174 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~---~~~~l~~i~~~~g~~~~~~~~~~  250 (350)
T d1q5ka_         174 VRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS---GVDQLVEIIKVLGTPTREQIREM  250 (350)
T ss_dssp             CTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSS---HHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             cCCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCC---HHHHHHHHHHHhCCChHHhhhhh
Confidence            3          567999998765 468999999999999999999999996441   111111111000      00000


Q ss_pred             hhhhhc---CC--------ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          232 LNKLVR---GT--------EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       232 ~~~~~~---~~--------~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      .....+   +.        ......++++.+|+.+||+.||++|||+.|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  302 (350)
T d1q5ka_         251 NPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA  302 (350)
T ss_dssp             CC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            000000   00        112234677999999999999999999999986

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.8e-43  Score=300.34  Aligned_cols=238  Identities=14%  Similarity=0.060  Sum_probs=181.0

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcCCCCccceEeE-EEEeCCcceEEEEe
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRVSWTTDIEVSS-VAMRGSKPSTEAAL   94 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~-~~~~~~~~~lv~e~   94 (274)
                      +.|...+.||+|+|  |.||+|.      ..++|........+++..|++++++++|+|+|..++ +..+.+..++||||
T Consensus         7 ~rY~l~~~iG~G~f--G~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~   84 (299)
T d1ckia_           7 NRYRLGRKIGSGSF--GDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   84 (299)
T ss_dssp             TTEEEEEEEEECSS--SEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CEEEEeEEEeeCCC--cEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEE
Confidence            45888899999999  9999982      223444444456678899999999999877655554 45677888999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc---CCCcEEEeccccceec---
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKISDFGLAKLL---  168 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~---~~~~~kl~d~g~~~~~---  168 (274)
                      +. +++.+.+.. ....+++..+..++.|++.||.|||++   +|+||||||+||++.   .+..++++|||+++..   
T Consensus        85 ~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~  159 (299)
T d1ckia_          85 LG-PSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  159 (299)
T ss_dssp             CC-CBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCT
T ss_pred             cC-Cchhhhhhh-ccCCCcHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHhhccccccCCCceeeeeccCcceecccc
Confidence            84 677777665 456799999999999999999999999   999999999999875   4567999999999753   


Q ss_pred             ---------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhhhh
Q 048314          169 ---------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRELN  233 (274)
Q Consensus       169 ---------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (274)
                                     +++.|+|||.+.+..++.++|||||||++|||++|..||................... ......
T Consensus       160 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~  238 (299)
T d1ckia_         160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKK-MSTPIE  238 (299)
T ss_dssp             TTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHH-HHSCHH
T ss_pred             ccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhccc-CCCChh
Confidence                           3678999999999899999999999999999999999997542222111111111000 000001


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          234 KLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                            ......++++.+++..||+.||++||+++++.+.
T Consensus       239 ------~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~  272 (299)
T d1ckia_         239 ------VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQL  272 (299)
T ss_dssp             ------HHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHH
T ss_pred             ------HhccCCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence                  1222455789999999999999999999887654

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-43  Score=308.52  Aligned_cols=240  Identities=15%  Similarity=0.135  Sum_probs=176.0

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCC----CCcHHHHHHHHhcCCCCccceEeEEEEeCC----
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYS----PSRPLTLTSIVSRVSWTTDIEVSSVAMRGS----   86 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~----~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----   86 (274)
                      .++|...+.||+|+|  |.||+|.      ..++|.+.....    .+.+.+|+++|++++|||||+++++|...+    
T Consensus        17 ~~~Y~~i~~lG~G~f--g~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~   94 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAY--GAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDD   94 (346)
T ss_dssp             BSSEEEEEEC--------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTT
T ss_pred             CCcEEEEEEEecCCC--eEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccc
Confidence            457777889999999  9999992      112222222211    235679999999999999999999997654    


Q ss_pred             --cceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           87 --KPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        87 --~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                        ..++||||| +.+|..++..   ..+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+|++|||.
T Consensus        95 ~~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~---~IiHrDiKp~NIL~~~~~~~kl~Dfg~  167 (346)
T d1cm8a_          95 FTDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGL  167 (346)
T ss_dssp             CCCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             cceEEEEEecc-cccHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhC---CCcccccCcchhhcccccccccccccc
Confidence              469999999 5688888764   5699999999999999999999999   999999999999999999999999999


Q ss_pred             ceecC--------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH---------
Q 048314          165 AKLLS--------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC---------  226 (274)
Q Consensus       165 ~~~~~--------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~---------  226 (274)
                      ++...        ++.|+|||.+.+. .++.++||||+||++|+|++|+.||....   ....+.......         
T Consensus       168 a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~---~~~~~~~~~~~~~~~~~~~~~  244 (346)
T d1cm8a_         168 ARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSD---HLDQLKEIMKVTGTPPAEFVQ  244 (346)
T ss_dssp             CEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHHHHHHHHCCCCHHHHH
T ss_pred             eeccCCccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCC---hHHHHHHHHhccCCCcHHHHh
Confidence            97654        6779999998764 56899999999999999999999996441   111111111000         


Q ss_pred             -Hhh---hhhhhhh---cCC---ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          227 -FIN---RELNKLV---RGT---EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       227 -~~~---~~~~~~~---~~~---~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                       ...   .......   ...   ......++.+.+|+.+||+.||++|||+.|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~  300 (346)
T d1cm8a_         245 RLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA  300 (346)
T ss_dssp             TCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             hhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence             000   0000000   000   122344577899999999999999999999986

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-43  Score=306.58  Aligned_cols=239  Identities=18%  Similarity=0.183  Sum_probs=175.5

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCCC---CCCcHHHHHHHHhcCCCCccceEeEEEEeCC----cc
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPY---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGS----KP   88 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~   88 (274)
                      .+|...+.||+|+|  |.||+|.      ..++|.+....   ..+++.+|+.+|++++||||+++++++....    ..
T Consensus         8 ~rY~~~~~LG~G~f--g~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~   85 (345)
T d1pmea_           8 PRYTNLSYIGEGAY--GMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD   85 (345)
T ss_dssp             TTEEEEEECC---C--CCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             CCeEEEEEEeeccC--eEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccce
Confidence            45777899999999  9999992      12233333221   1235679999999999999999999997643    23


Q ss_pred             eEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314           89 STEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus        89 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      +++++|+.+|+|.+++..   ..+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||++...
T Consensus        86 ~~l~~~~~~g~L~~~l~~---~~l~~~~i~~i~~qil~al~yLH~~---~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~  159 (345)
T d1pmea_          86 VYLVTHLMGADLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVA  159 (345)
T ss_dssp             EEEEEECCCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEeecCCchhhhhhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCcceEEECCCCCEEEcccCceeec
Confidence            455566789999999975   4699999999999999999999999   9999999999999999999999999998653


Q ss_pred             C--------------CCCcCCCccccc-CCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh---h
Q 048314          169 S--------------DKGCMAPECYKR-TPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN---R  230 (274)
Q Consensus       169 ~--------------~~~~~ape~~~~-~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~  230 (274)
                      .              ++.|+|||.+.. ..++.++||||+||++|+|++|..||.....   .... .........   .
T Consensus       160 ~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~---~~~~-~~~~~~~~~~~~~  235 (345)
T d1pmea_         160 DPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHY---LDQL-NHILGILGSPSQE  235 (345)
T ss_dssp             CGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHH-HHHHHHHCSCCHH
T ss_pred             cCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCH---HHHH-HHHhhhccCCChh
Confidence            2              567999999855 4578899999999999999999999964311   1111 100000000   0


Q ss_pred             -----------h-hhhhhcCCcc-----CHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          231 -----------E-LNKLVRGTEV-----DKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       231 -----------~-~~~~~~~~~~-----~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                                 . ..........     ....+.++.+|+.+||+.||++|||+.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~  294 (345)
T d1pmea_         236 DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  294 (345)
T ss_dssp             HHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                       0 0000000011     1123457899999999999999999999986

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-43  Score=301.09  Aligned_cols=242  Identities=15%  Similarity=0.114  Sum_probs=179.9

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhc----CCCCCCcHHHHHHHHhcCCCCccceEeEEEEe------
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVN----SPYSPSRPLTLTSIVSRVSWTTDIEVSSVAMR------   84 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------   84 (274)
                      .++|...+.||+|+|  |.||+|.      ..++|.+.    .....+++.+|+++|++++||||+++++++..      
T Consensus         9 ~~rY~i~~~LG~G~f--g~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~   86 (318)
T d3blha1           9 VSKYEKLAKIGQGTF--GEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYN   86 (318)
T ss_dssp             GGGEEEEEEEEECSS--SEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC------
T ss_pred             cCCEEEEEEEecCcC--eEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccc
Confidence            477888899999999  9999992      11222211    22334557899999999999999999999855      


Q ss_pred             --CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecc
Q 048314           85 --GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDF  162 (274)
Q Consensus        85 --~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~  162 (274)
                        .+..++||||+.++.+..+..  ....++...++.++.|++.||.|||+.   +|+||||||+||+++.++.+|++||
T Consensus        87 ~~~~~~~iv~e~~~~~~~~~~~~--~~~~~~~~~~~~i~~qil~~l~~lH~~---~ivHrDlKp~NILl~~~~~~kl~df  161 (318)
T d3blha1          87 RCKGSIYLVFDFCEHDLAGLLSN--VLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADF  161 (318)
T ss_dssp             ----CEEEEEECCCEEHHHHHTC--TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred             ccCceEEEEEeccCCCccchhhh--cccccccHHHHHHHHHHHHHHHHhccC---CEEecCcCchheeecCCCcEEeeec
Confidence              346799999998776654443  456799999999999999999999999   9999999999999999999999999


Q ss_pred             ccceecC---------------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHH
Q 048314          163 GLAKLLS---------------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKC  226 (274)
Q Consensus       163 g~~~~~~---------------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~  226 (274)
                      |++....               |+.|+|||.+... .++.++||||+||++|||++|+.||....   ....+ ......
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~---~~~~~-~~i~~~  237 (318)
T d3blha1         162 GLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNT---EQHQL-ALISQL  237 (318)
T ss_dssp             TTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSS---HHHHH-HHHHHH
T ss_pred             ceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCC---HHHHH-HHHHHh
Confidence            9986432               5679999998754 68999999999999999999999996431   11111 111111


Q ss_pred             Hhh---hhhhh--------h---hcCCccC-------HHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          227 FIN---RELNK--------L---VRGTEVD-------KKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       227 ~~~---~~~~~--------~---~~~~~~~-------~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ...   .....        .   ......+       ....+.+.+|+.+||+.||++|||+.|+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         238 CGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             HCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             cCCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence            100   00000        0   0000011       1224577899999999999999999999863

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-43  Score=300.73  Aligned_cols=241  Identities=15%  Similarity=0.157  Sum_probs=185.8

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCCC----CCCcHHHHHHHHhcCCCCccceEeEEEEeCCcceEE
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPY----SPSRPLTLTSIVSRVSWTTDIEVSSVAMRGSKPSTE   91 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~----~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv   91 (274)
                      ++|...+.||+|+|  |.||+|.      ..++|.++...    ..+++.+|+.+|++++||||+++++++.+....+++
T Consensus         2 ~ry~~i~~LG~G~f--g~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv   79 (292)
T d1unla_           2 QKYEKLEKIGEGTY--GTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CSEEEEEEEEECSS--SEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCCEeeeEEecCcC--eEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEE
Confidence            46778889999999  9999992      12233332221    134567999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccceecC--
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLAKLLS--  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~~--  169 (274)
                      +|++.+++|..++..  .+.+++..++.++.|++.||+|||++   +|+||||||+||+++.++.+|++|||.++...  
T Consensus        80 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~q~~~aL~~lH~~---~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~  154 (292)
T d1unla_          80 FEFCDQDLKKYFDSC--NGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIP  154 (292)
T ss_dssp             EECCSEEHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSC
T ss_pred             eeecccccccccccc--ccccchhHHHHHHHHHHHHHHHhhcC---CEeeecccCcccccccCCceeeeecchhhcccCC
Confidence            999999998888764  56789999999999999999999999   99999999999999999999999999997644  


Q ss_pred             ---------CCCcCCCcccccCC-CccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh---hhh---h
Q 048314          170 ---------DKGCMAPECYKRTP-ISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN---REL---N  233 (274)
Q Consensus       170 ---------~~~~~ape~~~~~~-~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~---~  233 (274)
                               +..|+|||.+.... ++.++||||+||++|||++|+.||..........   ..+......   ...   .
T Consensus       155 ~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  231 (292)
T d1unla_         155 VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQL---KRIFRLLGTPTEEQWPSMT  231 (292)
T ss_dssp             CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHH---HHHHHHHCCCCTTTCTTGG
T ss_pred             CccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHH---HHHHhhcCCCChhhhhhhh
Confidence                     34588999887654 6899999999999999999999986432211111   111111000   000   0


Q ss_pred             hhh------------cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          234 KLV------------RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       234 ~~~------------~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ...            .........++.+.+|+.+||+.||.+|||++|+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         232 KLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             GSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            000            000233345678899999999999999999999986

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=3.1e-42  Score=293.08  Aligned_cols=238  Identities=12%  Similarity=0.013  Sum_probs=188.9

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcCCC-CccceEeEEEEeCCcceEEEEe
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRVSW-TTDIEVSSVAMRGSKPSTEAAL   94 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e~   94 (274)
                      ++|...+.||+|+|  |.||+|.      ..++|........+.+.+|+++++.++| +|++++++++.+....++||||
T Consensus         5 ~~Y~i~~~iG~G~f--G~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~   82 (293)
T d1csna_           5 VHYKVGRRIGEGSF--GVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   82 (293)
T ss_dssp             TTEEEEEEEEECSS--CEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CceEEEEEEecCCC--eEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEe
Confidence            56788899999999  9999992      1223444444566778999999999986 8999999999999999999999


Q ss_pred             CCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-----CCcEEEeccccceec-
Q 048314           95 DLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-----FWTAKISDFGLAKLL-  168 (274)
Q Consensus        95 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-----~~~~kl~d~g~~~~~-  168 (274)
                      + +++|.+++.. ....+++.+...++.|++.||.|||+.   +++||||||+||+++.     ++.++++|||+++.. 
T Consensus        83 ~-~~~l~~~~~~-~~~~~~~~~~~~i~~q~~~~l~~lH~~---giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~  157 (293)
T d1csna_          83 L-GPSLEDLLDL-CGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR  157 (293)
T ss_dssp             C-CCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred             c-CCCHHHHHHh-hccchhhHHHHHHHHHHHHHHHHHHHC---CceeccCCccceeecCcccccCCceEEcccceeEEcc
Confidence            8 6899999976 456799999999999999999999999   9999999999999964     567999999999753 


Q ss_pred             -----------------CCCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhhh
Q 048314          169 -----------------SDKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINRE  231 (274)
Q Consensus       169 -----------------~~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  231 (274)
                                       +|+.|+|||.+.+..++.++||||||+++|||++|..||.................. .....
T Consensus       158 ~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~-~~~~~  236 (293)
T d1csna_         158 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEK-KQSTP  236 (293)
T ss_dssp             CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHH-HHHSC
T ss_pred             cCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhc-cCCCC
Confidence                             367899999999989999999999999999999999999754333222211111100 00001


Q ss_pred             hhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHhh
Q 048314          232 LNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVMM  273 (274)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~~  273 (274)
                      ...      .....++++.+++..|+..+|++||++..+.+.
T Consensus       237 ~~~------l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~  272 (293)
T d1csna_         237 LRE------LCAGFPEEFYKYMHYARNLAFDATPDYDYLQGL  272 (293)
T ss_dssp             HHH------HTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHH
T ss_pred             hHH------hcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHH
Confidence            111      122345679999999999999999998776553

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-43  Score=303.87  Aligned_cols=234  Identities=15%  Similarity=0.104  Sum_probs=187.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHHH---------HHHHHhc------CCCCCCcHHHHHHHHhcCCC-CccceEeEEEEe
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCMR---------ALMATVN------SPYSPSRPLTLTSIVSRVSW-TTDIEVSSVAMR   84 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~~---------~~~~~~~------~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~   84 (274)
                      .++|...+.||+|+|  |.||+|..         .++|.+.      .....+.+.+|+++|++++| |||+++++++.+
T Consensus        23 l~~y~~~~~IG~G~f--g~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~  100 (322)
T d1vzoa_          23 IENFELLKVLGTGAY--GKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT  100 (322)
T ss_dssp             GGGEEEEEEEEETTT--EEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE
T ss_pred             hhceEEEEEEecCCC--eEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeecc
Confidence            367888999999999  99999721         2233221      11345667899999999977 899999999999


Q ss_pred             CCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecccc
Q 048314           85 GSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGL  164 (274)
Q Consensus        85 ~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~  164 (274)
                      ....+++|||+.+|+|.+++..  .+.++....+.++.|++.||.|+|+.   +++||||||+||+++.++.+||+|||+
T Consensus       101 ~~~~~~v~e~~~~~~L~~~i~~--~~~~~e~~~~~~~~Qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~vkL~DFG~  175 (322)
T d1vzoa_         101 ETKLHLILDYINGGELFTHLSQ--RERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGL  175 (322)
T ss_dssp             TTEEEEEECCCCSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSE
T ss_pred             CCceeeeeecccccHHHHHHHh--cccccHHHHHHHHHHHHHHHHHhhcC---CEEeccCCccceeecCCCCEEEeeccc
Confidence            9999999999999999999986  45678899999999999999999999   999999999999999999999999999


Q ss_pred             ceecC------------CCCcCCCcccccC--CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhhh
Q 048314          165 AKLLS------------DKGCMAPECYKRT--PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFINR  230 (274)
Q Consensus       165 ~~~~~------------~~~~~ape~~~~~--~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      ++...            ++.|++||.+...  .++.++||||+||++|+|++|..||...........+..        .
T Consensus       176 a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~--------~  247 (322)
T d1vzoa_         176 SKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISR--------R  247 (322)
T ss_dssp             EEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHH--------H
T ss_pred             hhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH--------h
Confidence            87543            5679999998764  467899999999999999999999975532221111111        0


Q ss_pred             hhhhhhcCCccCHHHHHHHHHHHHHhhccCCCCCCC-----hhhHHh
Q 048314          231 ELNKLVRGTEVDKKNLENLVKVGLWCVQDEPALRPS-----MKCVVM  272 (274)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps-----~~evl~  272 (274)
                      ..   -.....+...+..+.+++.+||+.||++|||     ++|+++
T Consensus       248 ~~---~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         248 IL---KSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             HH---HCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             cc---cCCCCCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence            00   0111345567789999999999999999995     788875

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=1.4e-42  Score=299.82  Aligned_cols=241  Identities=13%  Similarity=0.151  Sum_probs=180.8

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCCCCCCcHHHHHHHHhcCC-CCccceEeEEEEe--CCcceEE
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSPYSPSRPLTLTSIVSRVS-WTTDIEVSSVAMR--GSKPSTE   91 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~lv   91 (274)
                      .++|...+.||.|+|  |.||+|.      ..++|.+. ....+++.+|+.+|++++ ||||+++++++..  ....++|
T Consensus        34 ~d~y~i~~~LG~G~f--g~V~~a~~~~~~~~vAiK~i~-~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v  110 (328)
T d3bqca1          34 QDDYQLVRKLGRGKY--SEVFEAINITNNEKVVVKILK-PVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  110 (328)
T ss_dssp             GGGEEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEC-SSCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEE
T ss_pred             CcCeEEEEEEecCcC--eEEEEEEECCCCCEEEEEEEC-HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEE
Confidence            357888899999999  9999982      11222222 234566789999999996 9999999999874  4568999


Q ss_pred             EEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEeccccceecC-
Q 048314           92 AALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKISDFGLAKLLS-  169 (274)
Q Consensus        92 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~d~g~~~~~~-  169 (274)
                      ||||.+++|.++.     +.+++..++.++.|++.||.|||++   +|+||||||+|||++.++ .+|++|||++.... 
T Consensus       111 ~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~---gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~  182 (328)
T d3bqca1         111 FEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP  182 (328)
T ss_dssp             EECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCGGGCEECCT
T ss_pred             EeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhc---ccccccccccceEEcCCCCeeeecccccceeccC
Confidence            9999999987664     3599999999999999999999999   999999999999998654 68999999997543 


Q ss_pred             ---------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHH-HHHHHH-----HHHhhh---
Q 048314          170 ---------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEII-LTNWVY-----KCFINR---  230 (274)
Q Consensus       170 ---------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~-~~~~~~-----~~~~~~---  230 (274)
                               ++.|+|||.+... .++.++||||+||+++++++|+.||........... ......     ......   
T Consensus       183 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~  262 (328)
T d3bqca1         183 GQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIE  262 (328)
T ss_dssp             TCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCC
T ss_pred             CCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccc
Confidence                     5679999998765 478999999999999999999999975432221111 000000     000000   


Q ss_pred             ---hhhhhhc-----------CCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          231 ---ELNKLVR-----------GTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       231 ---~~~~~~~-----------~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                         .......           ........++++.+|+.+||+.||++|||++|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         263 LDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             CCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence               0000000           00122234578899999999999999999999986

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-42  Score=299.93  Aligned_cols=238  Identities=18%  Similarity=0.119  Sum_probs=175.8

Q ss_pred             hhccccccCCCCCCCCcchhHHH------HHHHHHhcCC----CCCCcHHHHHHHHhcCCCCccceEeEEEEe------C
Q 048314           22 RNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP----YSPSRPLTLTSIVSRVSWTTDIEVSSVAMR------G   85 (274)
Q Consensus        22 ~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~   85 (274)
                      +.|...+.||+|+|  |.||+|.      ..++|.+...    ...+++.+|+.+|++++|||||++++++..      .
T Consensus        17 ~~Y~i~~~LG~G~f--g~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~   94 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQ--GIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF   94 (355)
T ss_dssp             TTEEEEEECSCC----CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             CCeEEEEEeecCcC--eEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccC
Confidence            56888899999999  9999981      1223333322    112346799999999999999999999964      3


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      ...|+|||||.++ +.+.+.    ..+++..++.++.|++.||.|||+.   ||+||||||+||+++.++.++++|||++
T Consensus        95 ~~~~iv~Ey~~~~-l~~~~~----~~~~~~~i~~~~~qil~gl~~LH~~---giiHrDlKP~Nil~~~~~~~kl~df~~~  166 (355)
T d2b1pa1          95 QDVYLVMELMDAN-LCQVIQ----MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA  166 (355)
T ss_dssp             CEEEEEEECCSEE-HHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-
T ss_pred             ceeEEEEeccchH-HHHhhh----cCCCHHHHHHHHHHHHHHHHHhhhc---ccccccCCccccccccccceeeechhhh
Confidence            6789999999765 444443    3689999999999999999999999   9999999999999999999999999987


Q ss_pred             eecC----------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHH----------
Q 048314          166 KLLS----------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYK----------  225 (274)
Q Consensus       166 ~~~~----------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~----------  225 (274)
                      +...          ++.|+|||.+.+..++.++||||+||++++|++|+.||....   ...........          
T Consensus       167 ~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~---~~~~~~~i~~~~~~~~~~~~~  243 (355)
T d2b1pa1         167 RTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRD---YIDQWNKVIEQLGTPCPEFMK  243 (355)
T ss_dssp             --------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHHHHHHHHCCCCHHHHT
T ss_pred             hccccccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCC---HHHHHHHHHHhccCCCHHHHH
Confidence            6533          678999999999899999999999999999999999996431   11111000000          


Q ss_pred             --------HHhhh----------hhhhhhcCC--ccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          226 --------CFINR----------ELNKLVRGT--EVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       226 --------~~~~~----------~~~~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                              .....          ...+...+.  ..+...+..+.+|+.+||+.||++|||++|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~  310 (355)
T d2b1pa1         244 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  310 (355)
T ss_dssp             TSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                    00000          000000000  123345778999999999999999999999986

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-41  Score=295.46  Aligned_cols=240  Identities=16%  Similarity=0.149  Sum_probs=176.4

Q ss_pred             hhhccccccCCCCCCCCcchhHHH------HHHHHHhcCC-C---CCCcHHHHHHHHhcCCCCccceEeEEEEeC-----
Q 048314           21 LRNFCRSSLNDRNSPRSKSVWSCM------RALMATVNSP-Y---SPSRPLTLTSIVSRVSWTTDIEVSSVAMRG-----   85 (274)
Q Consensus        21 ~~~f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~-~---~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----   85 (274)
                      .++|...+.||+|+|  |.||+|.      ..++|.+... .   ..+++.+|+.+|++++|||||++++++...     
T Consensus        17 ~~rY~i~~~LG~G~f--g~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~   94 (348)
T d2gfsa1          17 PERYQNLSPVGSGAY--GSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE   94 (348)
T ss_dssp             ETTEEEEEECGGGTT--SSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTT
T ss_pred             CCCeEEEEEEecCCC--eEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeecccccc
Confidence            346888899999999  9999992      1222333221 1   123467999999999999999999998643     


Q ss_pred             CcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEeccccc
Q 048314           86 SKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKISDFGLA  165 (274)
Q Consensus        86 ~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d~g~~  165 (274)
                      ...+++++|+.+|+|.+++..   +.+++..++.++.|++.||.|||++   +|+||||||+||+++.++.+|++|||.+
T Consensus        95 ~~~~~i~~~~~gg~L~~~~~~---~~l~e~~~~~i~~qil~aL~~LH~~---giiHrDiKp~NILi~~~~~~kl~dfg~a  168 (348)
T d2gfsa1          95 FNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLA  168 (348)
T ss_dssp             CCCCEEEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCC---
T ss_pred             CceEEEEEeecCCchhhhccc---ccccHHHHHHHHHHHHHHHHHHHhC---CCcccccCCccccccccccccccccchh
Confidence            345677788899999999964   5699999999999999999999999   9999999999999999999999999998


Q ss_pred             eecC--------CCCcCCCcccccC-CCccccceeehhHhHHHHhhcCCCccccCCChhhHHHHHHHHHHHhh-------
Q 048314          166 KLLS--------DKGCMAPECYKRT-PISVKADVYGYGIVLLETICCWENMEIDASKPEEIILTNWVYKCFIN-------  229 (274)
Q Consensus       166 ~~~~--------~~~~~ape~~~~~-~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-------  229 (274)
                      ....        +..|+|||..... .++.++||||+||++|+|++|..||.....   . .....+......       
T Consensus       169 ~~~~~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~---~-~~~~~i~~~~~~~~~~~~~  244 (348)
T d2gfsa1         169 RHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH---I-DQLKLILRLVGTPGAELLK  244 (348)
T ss_dssp             -CCTGGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH---H-HHHHHHHHHHCCCCHHHHT
T ss_pred             cccCcccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCH---H-HHHHHHHHhcCCCChHHhh
Confidence            6654        4569999987665 468899999999999999999999964311   1 111111110000       


Q ss_pred             ----hhhhhhh----cCCc-----cCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          230 ----RELNKLV----RGTE-----VDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       230 ----~~~~~~~----~~~~-----~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                          .......    ....     .....++.+.+||.+||+.||++|||++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~  300 (348)
T d2gfsa1         245 KISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  300 (348)
T ss_dssp             TCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence                0000000    0000     11234567899999999999999999999986

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-37  Score=268.69  Aligned_cols=244  Identities=17%  Similarity=0.156  Sum_probs=173.7

Q ss_pred             ccccccCCCCCCCCcchhHHH------HHHHHHhcCC-CCCCcHHHHHHHHhcCC-----------CCccceEeEEEEe-
Q 048314           24 FCRSSLNDRNSPRSKSVWSCM------RALMATVNSP-YSPSRPLTLTSIVSRVS-----------WTTDIEVSSVAMR-   84 (274)
Q Consensus        24 f~~~~~~g~g~~~~g~vy~~~------~~~~~~~~~~-~~~~~~~~e~~~l~~l~-----------h~niv~l~~~~~~-   84 (274)
                      |.....||.|+|  |.||+|.      ..++|.++.. ...+.+.+|++++++++           |+||+++++++.. 
T Consensus        15 Y~i~~~LG~G~f--g~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~   92 (362)
T d1q8ya_          15 YILVRKLGWGHF--STVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   92 (362)
T ss_dssp             EEEEEEEEECSS--EEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             EEEEEEEeeCCC--eEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeec
Confidence            777899999999  9999992      1222333322 12345678999988875           4789999998864 


Q ss_pred             -CCcceEEEEeCCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCC------
Q 048314           85 -GSKPSTEAALDLP-WDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFW------  155 (274)
Q Consensus        85 -~~~~~lv~e~~~~-gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~------  155 (274)
                       ....+++++++.. ++............+++..++.++.|++.||.|||+ .   +|+||||||+|||++.++      
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~---~IvHrDlKp~NIll~~~~~~~~~~  169 (362)
T d1q8ya_          93 GPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC---GIIHTDIKPENVLMEIVDSPENLI  169 (362)
T ss_dssp             ETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CEECSCCSGGGEEEEEEETTTTEE
T ss_pred             cccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhc---CcccccCChhHeeeeccCcccccc
Confidence             3456677776644 344555555456679999999999999999999998 6   999999999999997554      


Q ss_pred             cEEEeccccceecC--------CCCcCCCcccccCCCccccceeehhHhHHHHhhcCCCccccCCChhh---HHHHHHHH
Q 048314          156 TAKISDFGLAKLLS--------DKGCMAPECYKRTPISVKADVYGYGIVLLETICCWENMEIDASKPEE---IILTNWVY  224 (274)
Q Consensus       156 ~~kl~d~g~~~~~~--------~~~~~ape~~~~~~~~~~~Di~s~G~~l~el~~g~~p~~~~~~~~~~---~~~~~~~~  224 (274)
                      .++++|||.+....        ++.|+|||.+....++.++|+||+||++++|++|+.||.........   ..+...+.
T Consensus       170 ~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~  249 (362)
T d1q8ya_         170 QIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIE  249 (362)
T ss_dssp             EEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHH
T ss_pred             eeeEeecccccccccccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHH
Confidence            38999999987543        66799999999889999999999999999999999999754322111   11111110


Q ss_pred             HH-------Hhhhh-hhhhh----------------------cCCccCHHHHHHHHHHHHHhhccCCCCCCChhhHHh
Q 048314          225 KC-------FINRE-LNKLV----------------------RGTEVDKKNLENLVKVGLWCVQDEPALRPSMKCVVM  272 (274)
Q Consensus       225 ~~-------~~~~~-~~~~~----------------------~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~evl~  272 (274)
                      ..       ..... .....                      .....+...+..+.+|+.+||+.||++|||++|+++
T Consensus       250 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~  327 (362)
T d1q8ya_         250 LLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN  327 (362)
T ss_dssp             HHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred             HhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            00       00000 00000                      011345677889999999999999999999999986

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.72  E-value=5.3e-20  Score=145.38  Aligned_cols=148  Identities=12%  Similarity=0.065  Sum_probs=104.2

Q ss_pred             ccccCCCCCCCCcchhHHH-----HHHHHHhcC--------CC----CC--------CcHHHHHHHHhcCCCCccceEeE
Q 048314           26 RSSLNDRNSPRSKSVWSCM-----RALMATVNS--------PY----SP--------SRPLTLTSIVSRVSWTTDIEVSS   80 (274)
Q Consensus        26 ~~~~~g~g~~~~g~vy~~~-----~~~~~~~~~--------~~----~~--------~~~~~e~~~l~~l~h~niv~l~~   80 (274)
                      ..+.||+|+|  |.||+|.     ..++|..+.        ..    ..        .....|...+.++.|.++++.++
T Consensus         4 vg~~IG~G~~--g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~   81 (191)
T d1zara2           4 IGKLMGEGKE--SAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYA   81 (191)
T ss_dssp             EEEEEEECSS--EEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEE
T ss_pred             hCCEeeeCcc--eEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEE
Confidence            3577999999  9999981     111111110        00    00        11235788899999999999886


Q ss_pred             EEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 048314           81 VAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKIS  160 (274)
Q Consensus        81 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~  160 (274)
                      +.    ..+++|||+++..+.+         ++......++.|++.++.|||+.   +++||||||+|||++++ .++++
T Consensus        82 ~~----~~~lvme~~~~~~~~~---------l~~~~~~~i~~ql~~~l~~lH~~---giiHrDiKP~NILv~~~-~~~li  144 (191)
T d1zara2          82 WE----GNAVLMELIDAKELYR---------VRVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVSEE-GIWII  144 (191)
T ss_dssp             EE----TTEEEEECCCCEEGGG---------CCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEETT-EEEEC
T ss_pred             ec----CCEEEEEeeccccccc---------hhhHHHHHHHHHHHHHHHHHhhC---CEEEccCChhheeeeCC-CEEEE
Confidence            53    2489999998755432         34455678899999999999999   99999999999999865 58999


Q ss_pred             ccccceecCCCCcCCCcccc----------cCCCccccceeehh
Q 048314          161 DFGLAKLLSDKGCMAPECYK----------RTPISVKADVYGYG  194 (274)
Q Consensus       161 d~g~~~~~~~~~~~ape~~~----------~~~~~~~~Di~s~G  194 (274)
                      |||.+.....+.  +.+++.          ...|+.++|+||..
T Consensus       145 DFG~a~~~~~~~--~~~~l~rd~~~~~~~f~r~y~~~~d~~s~~  186 (191)
T d1zara2         145 DFPQSVEVGEEG--WREILERDVRNIITYFSRTYRTEKDINSAI  186 (191)
T ss_dssp             CCTTCEETTSTT--HHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred             ECCCcccCCCCC--cHHHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence            999987765332  111111          23567888999864

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.80  E-value=9e-06  Score=65.11  Aligned_cols=105  Identities=10%  Similarity=-0.100  Sum_probs=73.7

Q ss_pred             CCCcHHHHHHHHhcCC-CCccceEeEEEEeCCcceEEEEeCCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 048314           56 SPSRPLTLTSIVSRVS-WTTDIEVSSVAMRGSKPSTEAALDLPWDLAYIIFCSAERNPYWNQRVRIALDVAKGILYLHDE  134 (274)
Q Consensus        56 ~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~  134 (274)
                      ....+.+|..++..+. +=-+.+++.++.+++..++||++.++.++.+....    ...   ...++.+++..++.||+.
T Consensus        52 ~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l~G~~~~~~~~~----~~~---~~~~~~~l~~~l~~lH~~  124 (263)
T d1j7la_          52 TTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED----EQS---PEKIIELYAECIRLFHSI  124 (263)
T ss_dssp             STTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHTTT----CSC---HHHHHHHHHHHHHHHHTS
T ss_pred             chhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEecccccccccccc----ccc---HHHHHHHHHHHHHHHhcc
Confidence            4556778998887765 33368889888888999999999999887655421    111   223345555555556643


Q ss_pred             CC--------------------------------------------------------CCcccCCCCCCceEEcCCCcEE
Q 048314          135 CE--------------------------------------------------------PPILHCDIKPQNILMDEFWTAK  158 (274)
Q Consensus       135 ~~--------------------------------------------------------~~i~h~dl~~~nil~~~~~~~k  158 (274)
                      ..                                                        ..++|+|+.+.||+++++..+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~  204 (263)
T d1j7la_         125 DISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSG  204 (263)
T ss_dssp             CCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEE
T ss_pred             CccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEE
Confidence            10                                                        1378999999999999877778


Q ss_pred             Eecccccee
Q 048314          159 ISDFGLAKL  167 (274)
Q Consensus       159 l~d~g~~~~  167 (274)
                      ++||+.+..
T Consensus       205 lIDwe~a~~  213 (263)
T d1j7la_         205 FIDLGRSGR  213 (263)
T ss_dssp             ECCCTTCEE
T ss_pred             Eeechhccc
Confidence            999987643

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.04  E-value=0.00034  Score=55.17  Aligned_cols=46  Identities=13%  Similarity=-0.112  Sum_probs=35.4

Q ss_pred             CCCCcHHHHHHHHhcCCCCc--cceEeEEEEeCCcceEEEEeCCCCCH
Q 048314           55 YSPSRPLTLTSIVSRVSWTT--DIEVSSVAMRGSKPSTEAALDLPWDL  100 (274)
Q Consensus        55 ~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~~~gsL  100 (274)
                      .....+..|+..++.+....  +.+++.++.+.+..++||++++|.++
T Consensus        46 ~~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          46 GALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             CTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             cCHhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            44556778999888775433  57888888888889999999987554

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=94.89  E-value=0.029  Score=46.96  Aligned_cols=30  Identities=23%  Similarity=0.276  Sum_probs=25.5

Q ss_pred             CcccCCCCCCceEEcCCCcEEEeccccceec
Q 048314          138 PILHCDIKPQNILMDEFWTAKISDFGLAKLL  168 (274)
Q Consensus       138 ~i~h~dl~~~nil~~~~~~~kl~d~g~~~~~  168 (274)
                      .++|+|+.+.||+++.+. ++++|+..+...
T Consensus       224 ~LiHGDl~~gNIlv~~~~-~~vID~E~a~~G  253 (392)
T d2pula1         224 TLIHGDLHTGSIFASEHE-TKVIDPEFAFYG  253 (392)
T ss_dssp             EEECSCCCGGGEEECSSC-EEECCCTTCEEE
T ss_pred             ceeccCCcCCceeEcCCc-eEEechhhcccC
Confidence            589999999999998764 899999887553

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.79  E-value=0.054  Score=43.43  Aligned_cols=31  Identities=19%  Similarity=0.205  Sum_probs=27.4

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecccccee
Q 048314          137 PPILHCDIKPQNILMDEFWTAKISDFGLAKL  167 (274)
Q Consensus       137 ~~i~h~dl~~~nil~~~~~~~kl~d~g~~~~  167 (274)
                      .+++|+|+.+.|++++++....+.||+.+..
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cccccCCcchhhhhcccccceeEeccccccc
Confidence            3799999999999999988789999998754

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.00  E-value=0.17  Score=42.01  Aligned_cols=35  Identities=6%  Similarity=-0.136  Sum_probs=24.7

Q ss_pred             HHHHHHHhcCCCCcc-ceEeEEEEeCCcceEEEEeCCCCC
Q 048314           61 LTLTSIVSRVSWTTD-IEVSSVAMRGSKPSTEAALDLPWD   99 (274)
Q Consensus        61 ~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~gs   99 (274)
                      .+|..+++.+.-.++ .++++++.+    .+|+||+++.+
T Consensus        92 ~~E~~i~~~ls~~gl~Pkll~~~~~----g~I~efi~g~~  127 (395)
T d1nw1a_          92 VAESVIFTLLSERHLGPKLYGIFSG----GRLEEYIPSRP  127 (395)
T ss_dssp             HHHHHHHHHHHHTTSSSCEEEEETT----EEEECCCCEEE
T ss_pred             HHHHHHHHHHHhCCCCCeEEEEcCC----ceEEEEecccc
Confidence            478888888763344 688887642    68899987643