Citrus Sinensis ID: 048325

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MRMSKYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHccccccccccccEcccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mrmskykpaqcfasaqpdtAAVVRRsannqpsiwdhdflhslscnftsesyKKQGEHLKGKVKtmtnevsvtnkpldqLELIDNLQRLRLAYHFETEIESILHNIynnkddkwknenlYATSLEFRLLRqhgynvsq
Flexible Loop (DISEMBL)
mrmskykpaqcfasaqpdTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLkgkvktmtnevsvtnkpldqlELIDNLQRLRLAYHFETEIESILHniynnkddkwKNENLYATSLEfrllrqhgynvsq
Low Complexity Region (SEG)
MRMSKYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQ
Disordered region (IsUnstruct)
*******************************SIWDHDFLHSLSCNFTS********************VSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHG*****
Disordered Region (DISOPRED)
****************************NQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYN***
Disordered Region (DISEMBL)
********************AVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQ
Disordered Region (DISPRO)
*********************VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNV**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRMSKYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q8L5K3	606	(R)-limonene synthase 1 O	N/A	no	0.963	0.217	0.632	6e-40
Q93X23	597	Myrcene synthase, chlorop	N/A	no	0.934	0.214	0.522	2e-32
Q6PWU2	590	(-)-alpha-terpineol synth	no	no	0.824	0.191	0.533	1e-30
A7IZZ2	615	(+)-alpha-pinene synthase	N/A	no	0.905	0.201	0.5	9e-27
Q94G53	582	(-)-beta-pinene synthase,	N/A	no	0.832	0.195	0.470	5e-24
A4FVP2	565	Tricyclene synthase, chlo	no	no	0.883	0.214	0.458	2e-23
Q8L5K4	600	Gamma-terpinene synthase,	N/A	no	0.905	0.206	0.446	6e-23
Q2XSC4	538	Exo-alpha-bergamotene syn	N/A	no	0.802	0.204	0.473	1e-22
Q9ZUH4	591	Tricyclene synthase, chlo	no	no	0.854	0.197	0.470	6e-22
Q5SBP4	541	Alpha-zingiberene synthas	N/A	no	0.810	0.205	0.466	2e-21

>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1

 Score =  162 bits (410), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 100/136 (73%), Gaps = 4/136 (2%)

Query: 3   MSKYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKV 62
           M+KYKP QC  SA+ D   V RRSAN QPSIWDHDFL SL+ N+T E+YK++ E L+GKV
Sbjct: 32  MAKYKPVQCLISAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDEAYKRRAEELRGKV 91

Query: 63  KTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETE-IESILHNIYNNKDDKWKNENLYAT 121
           K    +V    +PLDQLELIDNLQRL LA+ FETE    + +   NNKD  W+ ENLYAT
Sbjct: 92  KIAIKDVI---EPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKENLYAT 148

Query: 122 SLEFRLLRQHGYNVSQ 137
           SLEFRLLRQHGY VSQ
Sbjct: 149 SLEFRLLRQHGYPVSQ 164

Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 0

>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/134 (52%), Positives = 94/134 (70%), Gaps = 6/134 (4%)

Query: 7   KPAQCFASAQPDTAA-VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTM 65
           +P QC  + +  T+  ++RRSAN QPSIW+HD++ SL   +  E+  +Q   LK +V+ M
Sbjct: 39  RPVQCMVANKVSTSPDILRRSANYQPSIWNHDYIESLRIEYVGETCTRQINVLKEQVRMM 98

Query: 66  TNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNN--KDDKWKNENLYATSL 123
            ++V     PL+QLELI+ LQRL L+YHFE EI+ IL  +YNN    D WK ENLYAT+L
Sbjct: 99  LHKVV---NPLEQLELIEILQRLGLSYHFEEEIKRILDGVYNNDHGGDTWKAENLYATAL 155

Query: 124 EFRLLRQHGYNVSQ 137
           +FRLLRQHGY+VSQ
Sbjct: 156 KFRLLRQHGYSVSQ 169

Involved in monoterpene (C10) biosynthesis. The major product is myrcene followed by minor amounts (1.2%) of the cyclic monoterpene limonene.

Quercus ilex (taxid: 58334)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 88/118 (74%), Gaps = 5/118 (4%)

Query: 22  VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
           +VRR+AN  P+IWD+D++ SL  ++  E+Y ++ + LK  VK M  +V    KPLDQLEL
Sbjct: 47  IVRRTANYHPTIWDYDYVQSLRSDYVGETYTRRLDKLKRDVKPMLGKV---KKPLDQLEL 103

Query: 82  IDNLQRLRLAYHFETEIESILHNIYN--NKDDKWKNENLYATSLEFRLLRQHGYNVSQ 137
           ID LQRL + YHF+ EI+ IL+ IYN  N+ ++W+ ++LYAT+LEFRLLRQHGY+V Q
Sbjct: 104 IDVLQRLGIYYHFKDEIKRILNGIYNQYNRHEEWQKDDLYATALEFRLLRQHGYDVPQ 161

Mediates the conversion of geranyl diphosphate into alpha-terpineol, a monoterpenol. Monoterpenols contribute to the final grape and wine aroma and flavor. Also forms some 1,8-cineole and traces of other monoterpenoids.

Vitis vinifera (taxid: 29760)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 1

EC: 1

>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1

 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 85/136 (62%), Gaps = 12/136 (8%)

Query: 8   PAQCFASAQP--DTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTM 65
           P QC  +  P  DT+ +VRRSAN  P IW  DF+ SL C +  E Y  +   LK +VK M
Sbjct: 53  PIQCSLAKSPSSDTSTIVRRSANYDPPIWSFDFIQSLPCKYKGEPYTSRSNKLKEEVKKM 112

Query: 66  TNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILH----NIYNNKDDKWKNENLYAT 121
              V + N  L QLELID LQRL ++YHFE EI SIL     NI  NK+ K+   +LYAT
Sbjct: 113 L--VGMENS-LVQLELIDTLQRLGISYHFENEIISILKEYFTNISTNKNPKY---DLYAT 166

Query: 122 SLEFRLLRQHGYNVSQ 137
           +LEFRLLR++GY + Q
Sbjct: 167 ALEFRLLREYGYAIPQ 182

Involved in monoterpene (C10) olefins biosynthesis. The major product is (+)-alpha-pinene.

Cannabis sativa (taxid: 3483)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|Q94G53|QH6_ARTAN (-)-beta-pinene synthase,chloroplastic OS=Artemisia annua GN=QH6 PE=1 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 74/117 (63%), Gaps = 3/117 (2%)

Query: 24  RRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELID 83
           RRSAN  PS+W +DF+ SLS  +  ++Y  +   LKG V+TM  E +    PL  L L+D
Sbjct: 48  RRSANYAPSLWSYDFVQSLSSKYKGDNYMARSRALKGVVRTMILEANGIENPLSLLNLVD 107

Query: 84  NLQRLRLAYHFETEIESILHNIYNN---KDDKWKNENLYATSLEFRLLRQHGYNVSQ 137
           +LQRL ++YHF  EI ++L  IY N     +KW N +L   SL FRLLRQHGY++ Q
Sbjct: 108 DLQRLGISYHFLDEISNVLEKIYLNFYKSPEKWTNMDLNLRSLGFRLLRQHGYHIPQ 164

Monoterpene synthase converting geranyl diphosphate to (-)-beta-pinene and (-)-alpha-pinene in a 94:6 ratio.

Artemisia annua (taxid: 35608)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 2

EC: 0

>sp|A4FVP2|TPS03_ARATH Tricyclene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 82/131 (62%), Gaps = 10/131 (7%)

Query: 14  SAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTN 73
           S  P    V RRSAN QPS+W H++L SL   +  E   ++   LK +V  M NE   T 
Sbjct: 16  SKTPSQPLVSRRSANYQPSLWQHEYLLSLGNTYVKEDNVERVTLLKQEVSKMLNE---TE 72

Query: 74  KPLDQLELIDNLQRLRLAYHFETEIESILHNI-------YNNKDDKWKNENLYATSLEFR 126
             L+QLELID LQRL ++YHFE EI+  L N+       + N+ D+ +  +LYAT+LEFR
Sbjct: 73  GLLEQLELIDTLQRLGVSYHFEQEIKKTLTNVHVKNVRAHKNRIDRNRWGDLYATALEFR 132

Query: 127 LLRQHGYNVSQ 137
           LLRQHG++++Q
Sbjct: 133 LLRQHGFSIAQ 143

Predominantly involved in sesquiterpenes (C15) biosynthesis. Using FPP as substrate, the major product is (E,E)-alpha-farnesene with minor amounts of (Z,E)-alpha-farnesene and (E,E)-beta-farnesene. Using GPP as substrate, could also be able in vitro to synthesize monoterpene (C10) with (E)-beta-ocimene as the major product and with (Z)-beta-ocimene and myrcene as minor products.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: -

>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 82/132 (62%), Gaps = 8/132 (6%)

Query: 5   KYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKT 64
           +Y  A   +S +P    ++RRSA+  P+IW  D++ SL   +  ESY +Q E LK +V  
Sbjct: 37  QYPMAASTSSIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSA 96

Query: 65  MT---NEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYAT 121
           M    N+V V   PL QLELIDNL RL ++YHFE EI+  L  I+N       N++LYA 
Sbjct: 97  MLQQDNKV-VDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKN----TNKSLYAR 151

Query: 122 SLEFRLLRQHGY 133
           +L+FR+LRQ+GY
Sbjct: 152 ALKFRILRQYGY 163

Monoterpene synthase which catalyzes the conversion of geranyl diphosphate to gamma-terpinene and the minor products limonene, alpha-pinene, beta-pinene, alpha-terpinolene, alpha-thujene, alpha-terpinene, myrcene and sabinene.

Citrus limon (taxid: 2708)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q2XSC4|LABER_LAVAN Exo-alpha-bergamotene synthase OS=Lavandula angustifolia PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 24  RRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELID 83
           RRS N + SIWD D++ SL+ ++T + Y  + E LK +VK M +E +     L+QLELI+
Sbjct: 4   RRSGNFESSIWDDDYIQSLTSSYTGKMYVDKSEKLKIEVKMMMDEAT---DELEQLELIN 60

Query: 84  NLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQ 137
           +LQRL ++YHF+  I  +L+NIY + D K+  ++L+ T+L+FRLLRQHGY V Q
Sbjct: 61  DLQRLGISYHFKDGIAKMLNNIYKS-DSKYMEKDLHLTALKFRLLRQHGYRVPQ 113

Catalyzes a mixture of sesquiterpenoids from (2E,6E)-farnesyl diphosphate. Catalyzes the formation of exo-alpha-bergamotene, as well as (E)-nerolidol, (Z)-alpha-bisabolene, (E)-beta-farnesene and beta-sesquiphellandrene. Also has activity towards geranyl diphosphate, but to a much lesser extent.

Lavandula angustifolia (taxid: 39329)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 8

EC: 1

>sp|Q9ZUH4|TPSA_ARATH Tricyclene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 77/119 (64%), Gaps = 2/119 (1%)

Query: 19  TAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQ 78
           +  V RRSAN QPS WDH  L S+   F  +   ++ + LK KV+ M N+   T   LDQ
Sbjct: 41  SPTVQRRSANYQPSRWDHHHLLSVENKFAKDKRVRERDLLKEKVRKMLNDEQKTY--LDQ 98

Query: 79  LELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQ 137
           LE ID+LQ+L ++YHFE EI++IL + Y       +  +L+AT+LEFRL RQHG+NVS+
Sbjct: 99  LEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHATALEFRLFRQHGFNVSE 157

Involved in monoterpene (C10) biosynthesis. The major product is beta-myrcene (56%) followed by (E)-beta-ocimene (20%) and minor amounts (less than 5%) of the cyclic monoterpene (-)-limonene, (+)-limonene, 2-carene and tricyclene.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q5SBP4|AZIS_OCIBA Alpha-zingiberene synthase OS=Ocimum basilicum GN=ZIS PE=1 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 74/118 (62%), Gaps = 7/118 (5%)

Query: 24  RRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELID 83
           RRSAN Q SIWD +F+ SL+  +  E Y ++ E LK +VKTM ++   T   L QLELID
Sbjct: 4   RRSANYQASIWDDNFIQSLASPYAGEKYAEKAEKLKTEVKTMIDQ---TRDELKQLELID 60

Query: 84  NLQRLRLAYHFETEIESILHNIY----NNKDDKWKNENLYATSLEFRLLRQHGYNVSQ 137
           NLQRL + +HF+   + IL  IY    N     +K + L+ T+L FR+LRQ GY+V Q
Sbjct: 61  NLQRLGICHHFQDLTKKILQKIYGEERNGDHQHYKEKGLHFTALRFRILRQDGYHVPQ 118

Sesquiterpene synthase that catalyzes the formation of alpha-zingiberene and other sesquiterpenes from trans,trans-farnesyl diphosphate (FPP). May have an additional monoterpene synthase activity.

Ocimum basilicum (taxid: 39350)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 6

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
322424201	607	limonene synthase [Murraya paniculata]	1.0	0.225	0.868	4e-64
21435708	606	(+)-limonene synthase 2 [Citrus limon]	0.963	0.217	0.683	5e-45
209446863	607	limonene synthase [Poncirus trifoliata]	0.956	0.215	0.681	7e-45
49659437	608	d-limonene synthase [Citrus unshiu]	0.963	0.217	0.676	5e-44
49659435	606	d-limonene synthase [Citrus unshiu]	0.963	0.217	0.669	1e-43
41017756	606	RecName: Full=(R)-limonene synthase 1; A	0.963	0.217	0.632	4e-38
394556815	612	geraniol synthase [Citrus jambhiri]	0.963	0.215	0.625	3e-36
147843306	604	hypothetical protein VITISV_017009 [Viti	0.927	0.210	0.567	4e-36
225465911	593	PREDICTED: myrcene synthase, chloroplast	0.927	0.214	0.567	4e-36
147775442	593	hypothetical protein VITISV_001721 [Viti	0.927	0.214	0.567	4e-36

>gi|322424201|gb|ADX01382.1| limonene synthase [Murraya paniculata]

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 125/137 (91%)

Query: 1   MRMSKYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKG 60
           MRMS+YKP QC ASAQPDTAAVV RSAN QPSIWDHDFLHSLS NF  ESYKKQ E+LKG
Sbjct: 31  MRMSEYKPTQCLASAQPDTAAVVGRSANYQPSIWDHDFLHSLSGNFAGESYKKQTENLKG 90

Query: 61  KVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYA 120
           KVKT+ NEVSVTNKPLDQLELIDNLQRL LAYHFETEI++ILHN+YNNK DKWK ENLYA
Sbjct: 91  KVKTVINEVSVTNKPLDQLELIDNLQRLGLAYHFETEIKNILHNVYNNKYDKWKKENLYA 150

Query: 121 TSLEFRLLRQHGYNVSQ 137
           TSLEFRLLRQHGYNVSQ
Sbjct: 151 TSLEFRLLRQHGYNVSQ 167

Source: Murraya paniculata

Species: Murraya paniculata

Genus: Murraya

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21435708|gb|AAM53946.1|AF514289_1 (+)-limonene synthase 2 [Citrus limon]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 106/136 (77%), Gaps = 4/136 (2%)

Query: 3   MSKYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKV 62
           M+K KP QC  SA+ D   V RRSAN QPSIWDHDFL SL+ N+T E+Y+++ E LKGKV
Sbjct: 32  MAKNKPVQCLVSAKYDNLIVDRRSANYQPSIWDHDFLQSLNSNYTDETYRRRAEELKGKV 91

Query: 63  KTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIY-NNKDDKWKNENLYAT 121
           K    +V+   +PLDQLELIDNLQRL LAY FETEI +ILHNIY NNKD  W+ ENLYAT
Sbjct: 92  KIAIKDVT---EPLDQLELIDNLQRLGLAYRFETEIRNILHNIYNNNKDYVWRKENLYAT 148

Query: 122 SLEFRLLRQHGYNVSQ 137
           SLEFRLLRQHGY VSQ
Sbjct: 149 SLEFRLLRQHGYPVSQ 164

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209446863|dbj|BAG74774.1| limonene synthase [Poncirus trifoliata]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 92/135 (68%), Positives = 106/135 (78%), Gaps = 4/135 (2%)

Query: 4   SKYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVK 63
           +K KP QC  SA+ D   V RRSAN QP IWDHDFL SL+ ++T E+Y+++ E LKGKVK
Sbjct: 33  AKNKPVQCLVSAKYDNLTVDRRSANYQPPIWDHDFLQSLNSDYTDETYRRRAEELKGKVK 92

Query: 64  TMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIY-NNKDDKWKNENLYATS 122
           T   +V+   +PLDQLELIDNLQRL LAYHFETEI +ILHNIY NNKD  W+ ENLYATS
Sbjct: 93  TAIEDVT---EPLDQLELIDNLQRLGLAYHFETEIRNILHNIYNNNKDYIWRKENLYATS 149

Query: 123 LEFRLLRQHGYNVSQ 137
           LEFRLLRQHGY VSQ
Sbjct: 150 LEFRLLRQHGYPVSQ 164

Source: Poncirus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49659437|dbj|BAD27257.1| d-limonene synthase [Citrus unshiu]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/136 (67%), Positives = 105/136 (77%), Gaps = 4/136 (2%)

Query: 3   MSKYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKV 62
           M+K KP QC  S + D   V RRSAN QPSIWDHDFL SL+ N+T E+YK++ E LKGKV
Sbjct: 32  MAKNKPVQCLVSTKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKV 91

Query: 63  KTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYN-NKDDKWKNENLYAT 121
           KT   +V+   +PLDQLELIDNLQRL LAYHFE EI +IL NI+N NKD  W+ ENLYAT
Sbjct: 92  KTAIKDVT---EPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYAT 148

Query: 122 SLEFRLLRQHGYNVSQ 137
           SLEFRLLRQHGY VSQ
Sbjct: 149 SLEFRLLRQHGYPVSQ 164

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49659435|dbj|BAD27256.1| d-limonene synthase [Citrus unshiu]

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 106/136 (77%), Gaps = 4/136 (2%)

Query: 3   MSKYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKV 62
           M+K KP QC  SA+ D   V RRSAN QPSIWDHDFL SL+ N+T E+YK++ E LKGKV
Sbjct: 32  MAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKV 91

Query: 63  KTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYN-NKDDKWKNENLYAT 121
            T   +V+   +PL+QLELID+LQRL LAYHFETEI +ILH+IYN N D  W+ ENLYAT
Sbjct: 92  MTTIKDVT---EPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYAT 148

Query: 122 SLEFRLLRQHGYNVSQ 137
           SLEFRLLRQHGY VSQ
Sbjct: 149 SLEFRLLRQHGYPVSQ 164

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41017756|sp|Q8L5K3.1|RLC1_CITLI RecName: Full=(R)-limonene synthase 1; AltName: Full=(+)-limonene synthase 1 gi|21435703|gb|AAM53944.1|AF514287_1 (+)-limonene synthase 1 [Citrus limon] gi|152962684|dbj|BAF73932.1| limonene synthase [Citrus jambhiri]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 100/136 (73%), Gaps = 4/136 (2%)

Query: 3   MSKYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKV 62
           M+KYKP QC  SA+ D   V RRSAN QPSIWDHDFL SL+ N+T E+YK++ E L+GKV
Sbjct: 32  MAKYKPVQCLISAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDEAYKRRAEELRGKV 91

Query: 63  KTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETE-IESILHNIYNNKDDKWKNENLYAT 121
           K    +V    +PLDQLELIDNLQRL LA+ FETE    + +   NNKD  W+ ENLYAT
Sbjct: 92  KIAIKDVI---EPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKENLYAT 148

Query: 122 SLEFRLLRQHGYNVSQ 137
           SLEFRLLRQHGY VSQ
Sbjct: 149 SLEFRLLRQHGYPVSQ 164

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|394556815|dbj|BAM29049.1| geraniol synthase [Citrus jambhiri]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 98/136 (72%), Gaps = 4/136 (2%)

Query: 3   MSKYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKV 62
           M+K KP QC  SA+ D   V RRSAN QPSIWDHDFL SL+  +T E+YK++ E LKGKV
Sbjct: 32  MAKNKPLQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSKYTDEAYKRRAEGLKGKV 91

Query: 63  KTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETE-IESILHNIYNNKDDKWKNENLYAT 121
           K    +V    +PLDQLELIDNLQRL LA+ FETE    + +   NNKD  W+ ENLYAT
Sbjct: 92  KIAIKDVI---EPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKENLYAT 148

Query: 122 SLEFRLLRQHGYNVSQ 137
           SLEFRLLRQHGY VSQ
Sbjct: 149 SLEFRLLRQHGYPVSQ 164

Source: Citrus jambhiri

Species: Citrus jambhiri

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843306|emb|CAN82665.1| hypothetical protein VITISV_017009 [Vitis vinifera]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/134 (56%), Positives = 97/134 (72%), Gaps = 7/134 (5%)

Query: 8   PAQCFASAQPD--TAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTM 65
           P QC   A+    TA +VRR+A+ QPSIWDHD++ SL+ ++  E+Y +Q E LKG VK M
Sbjct: 36  PVQCTGGAKTSSQTAVIVRRTASYQPSIWDHDYIQSLTSDYVGETYTRQLEKLKGDVKIM 95

Query: 66  TNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYN--NKDDKWKNENLYATSL 123
             +V    +PL QLELID LQRL + YHF  EI+ ILH+IYN  N++D WKN +LYAT+L
Sbjct: 96  LGQV---GEPLHQLELIDTLQRLGIHYHFGEEIKRILHSIYNNYNRNDTWKNGDLYATAL 152

Query: 124 EFRLLRQHGYNVSQ 137
           EFRLLRQHGY+V Q
Sbjct: 153 EFRLLRQHGYHVPQ 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465911|ref|XP_002267159.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/134 (56%), Positives = 96/134 (71%), Gaps = 7/134 (5%)

Query: 8   PAQCFASAQPD--TAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTM 65
           P QC   A+    TA +VRR+A+ QPSIWDHD++ SL+ ++  E+Y +Q E LKG VK M
Sbjct: 36  PVQCTGGAKTSSQTAVIVRRTASYQPSIWDHDYIQSLTSDYVGETYTRQLEKLKGDVKIM 95

Query: 66  TNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYN--NKDDKWKNENLYATSL 123
             +V    +PL QLELID LQRL + YHF  EI+ ILH IYN  N++D WKN +LYAT+L
Sbjct: 96  LGQV---GEPLHQLELIDTLQRLGIHYHFGEEIKRILHGIYNNYNRNDTWKNGDLYATAL 152

Query: 124 EFRLLRQHGYNVSQ 137
           EFRLLRQHGY+V Q
Sbjct: 153 EFRLLRQHGYHVPQ 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775442|emb|CAN64943.1| hypothetical protein VITISV_001721 [Vitis vinifera]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/134 (56%), Positives = 97/134 (72%), Gaps = 7/134 (5%)

Query: 8   PAQCFASAQPD--TAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTM 65
           P QC   A+    TA +VRR+A+ QPSIWDHD++ SL+ ++  E+Y +Q E LKG VK M
Sbjct: 36  PVQCTGGAKTSSQTAVIVRRTASYQPSIWDHDYIRSLTSDYVGETYTRQLEKLKGDVKIM 95

Query: 66  TNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYN--NKDDKWKNENLYATSL 123
             +V    +PL QLELID LQRL + YHF  EI+ ILH+IYN  N++D WKN +LYAT+L
Sbjct: 96  LGQV---GEPLHQLELIDTLQRLGIHYHFGEEIKRILHSIYNNYNRNDTWKNGDLYATAL 152

Query: 124 EFRLLRQHGYNVSQ 137
           EFRLLRQHGY+V Q
Sbjct: 153 EFRLLRQHGYHVPQ 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
UNIPROTKB|J7LQ09	542	J7LQ09 "Trans-alpha-bergamoten	0.810	0.204	0.504	2.8e-24
TAIR|locus:2086004	598	AT3G25810 [Arabidopsis thalian	0.824	0.188	0.5	5.6e-22
TAIR|locus:2047510	591	TPS10 "terpene synthase 10" [A	0.832	0.192	0.482	7e-22
UNIPROTKB|Q8L5K4	600	Q8L5K4 "Gamma-terpinene syntha	0.912	0.208	0.442	1.2e-21
TAIR|locus:2129101	565	TPS03 "terpene synthase 03" [A	0.883	0.214	0.458	1.3e-21
UNIPROTKB|J7LH11	546	J7LH11 "(+)-epi-alpha-bisabolo	0.802	0.201	0.456	5.4e-21
UNIPROTKB|Q9SPN0	567	QH1 "R-linalool synthase QH1,	0.978	0.236	0.425	2.7e-20
TAIR|locus:2829283	600	TPS-CIN ""terpene synthase-lik	0.868	0.198	0.464	3.1e-20
TAIR|locus:2086014	600	TPS-CIN ""terpene synthase-lik	0.868	0.198	0.464	3.1e-20
UNIPROTKB|B5A434	576	B5A434 "(+)-alpha-terpineol sy	0.934	0.222	0.419	9.7e-20

UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)]

 Score = 284 (105.0 bits), Expect = 2.8e-24, P = 2.8e-24
 Identities = 60/119 (50%), Positives = 81/119 (68%)

Query:    24 RRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELID 83
             RRS N + SIWD DFL SL+  +T++ Y KQ + LK +VK +  E   T + LDQL+LID
Sbjct:     4 RRSGNFKASIWDDDFLQSLTSPYTAKEYLKQADKLKWQVKVIIKE---TKQRLDQLDLID 60

Query:    84 NLQRLRLAYHFETEIESILHNIYNNK-----DDKWKNENLYATSLEFRLLRQHGYNVSQ 137
             N+QRL +++HF  EI+ +L NIY        D     ++LY+TSL+FRLLRQHGY+VSQ
Sbjct:    61 NIQRLGISHHFRDEIQRVLQNIYEKMRVECPDRMLMEKDLYSTSLQFRLLRQHGYHVSQ 119

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901940 "(-)-exo-alpha-bergamotene biosynthetic process" evidence=IDA

TAIR|locus:2086004 AT3G25810 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 5.6e-22, P = 5.6e-22
 Identities = 59/118 (50%), Positives = 77/118 (65%)

Query:    24 RRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELID 83
             RRS N QPS WDH +L S+   + +E        LK KVK M  EV  T   L++LELID
Sbjct:    47 RRSGNYQPSSWDHSYLLSIENKYVNEKEVITRHVLKKKVKKMLEEVE-TKSRLEKLELID 105

Query:    84 NLQRLRLAYHFETEIESILHNIY-NNKDDKWK---NENLYATSLEFRLLRQHGYNVSQ 137
             +LQ+L ++YHFE EI +IL N +  N  + WK    E+L+AT+LEFRLLRQHG+ VS+
Sbjct:   106 DLQKLGVSYHFEQEINNILTNFHLENGKNIWKCDKEEDLHATALEFRLLRQHGFGVSE 163

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0034002 "(R)-limonene synthase activity" evidence=IDA

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0043693 "monoterpene biosynthetic process" evidence=IDA

GO:0050550 "pinene synthase activity" evidence=IDA

GO:0050551 "myrcene synthase activity" evidence=IDA

GO:0050552 "(4S)-limonene synthase activity" evidence=IDA

GO:0080015 "sabinene synthase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2047510 TPS10 "terpene synthase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 56/116 (48%), Positives = 76/116 (65%)

Query:    22 VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
             V RRSAN QPS WDH  L S+   F  +   ++ + LK KV+ M N+   T   LDQLE 
Sbjct:    44 VQRRSANYQPSRWDHHHLLSVENKFAKDKRVRERDLLKEKVRKMLNDEQKTY--LDQLEF 101

Query:    82 IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQ 137
             ID+LQ+L ++YHFE EI++IL + Y       +  +L+AT+LEFRL RQHG+NVS+
Sbjct:   102 IDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHATALEFRLFRQHGFNVSE 157

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016099 "monoterpenoid biosynthetic process" evidence=IDA

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0050551 "myrcene synthase activity" evidence=IDA

GO:0080027 "response to herbivore" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)]

 Score = 261 (96.9 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 58/131 (44%), Positives = 82/131 (62%)

Query:     5 KYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKT 64
             +Y  A   +S +P    ++RRSA+  P+IW  D++ SL   +  ESY +Q E LK +V  
Sbjct:    37 QYPMAASTSSIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSA 96

Query:    65 MTNEVS--VTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATS 122
             M  + +  V   PL QLELIDNL RL ++YHFE EI+  L  I+N    K  N++LYA +
Sbjct:    97 MLQQDNKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHN----KNTNKSLYARA 152

Query:   123 LEFRLLRQHGY 133
             L+FR+LRQ+GY
Sbjct:   153 LKFRILRQYGY 163

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

TAIR|locus:2129101 TPS03 "terpene synthase 03" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 60/131 (45%), Positives = 82/131 (62%)

Query:    14 SAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTN 73
             S  P    V RRSAN QPS+W H++L SL   +  E   ++   LK +V  M NE   T 
Sbjct:    16 SKTPSQPLVSRRSANYQPSLWQHEYLLSLGNTYVKEDNVERVTLLKQEVSKMLNE---TE 72

Query:    74 KPLDQLELIDNLQRLRLAYHFETEIESILHNIY-------NNKDDKWKNENLYATSLEFR 126
               L+QLELID LQRL ++YHFE EI+  L N++        N+ D+ +  +LYAT+LEFR
Sbjct:    73 GLLEQLELIDTLQRLGVSYHFEQEIKKTLTNVHVKNVRAHKNRIDRNRWGDLYATALEFR 132

Query:   127 LLRQHGYNVSQ 137
             LLRQHG++++Q
Sbjct:   133 LLRQHGFSIAQ 143

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0080027 "response to herbivore" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009625 "response to insect" evidence=IEP

GO:0016106 "sesquiterpenoid biosynthetic process" evidence=IMP

GO:0050551 "myrcene synthase activity" evidence=IDA

GO:0052578 "alpha-farnesene synthase activity" evidence=IMP

GO:0006863 "purine nucleobase transport" evidence=RCA

UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)]

 Score = 254 (94.5 bits), Expect = 5.4e-21, P = 5.4e-21
 Identities = 53/116 (45%), Positives = 80/116 (68%)

Query:    24 RRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELID 83
             RRSAN +P+IW++++L SL+  +  + + +Q E LK +V+ +  +   T+ PLD +EL+D
Sbjct:     6 RRSANYKPTIWNNEYLQSLNSIYGEKRFLEQAEKLKDEVRMLLEK---TSDPLDHIELVD 62

Query:    84 NLQRLRLAYHFETEIESILHNIYNNKDD--KWKN-ENLYATSLEFRLLRQHGYNVS 136
              LQRL ++YHF   I+  L NIY+   D  +W + +NL+AT+L FRLLRQHGY VS
Sbjct:    63 VLQRLAISYHFTEYIDRNLKNIYDILIDGRRWNHADNLHATTLSFRLLRQHGYQVS 118

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901943 "(+)-epi-alpha-bisabolol biosynthetic process" evidence=IDA

UNIPROTKB|Q9SPN0 QH1 "R-linalool synthase QH1, chloroplastic" [Artemisia annua (taxid:35608)]

 Score = 248 (92.4 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 60/141 (42%), Positives = 79/141 (56%)

Query:     1 MRMSKYKPAQCFASAQPDTAAV-VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLK 59
             MR+   K  +  A+A  + A   VRRSAN +PS W  D + SLS  +T + Y  +   LK
Sbjct:     5 MRIYSTKTTRITANATVNAADTHVRRSANYKPSSWSFDHIQSLSSKYTGDDYVARANTLK 64

Query:    60 GKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNK---DDKWKNE 116
               VKTM  +   +   L  LEL+D LQRL ++Y FE EI ++L  IY N     + W   
Sbjct:    65 DAVKTMIRK---SGNSLRTLELVDELQRLGISYLFEEEISNLLETIYYNYYKFPENWNKI 121

Query:   117 NLYATSLEFRLLRQHGYNVSQ 137
             NL   +L FRLLRQHGY+V Q
Sbjct:   122 NLNLKALGFRLLRQHGYHVPQ 142

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

GO:0034008 "R-linalool synthase activity" evidence=IDA

TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 59/127 (46%), Positives = 82/127 (64%)

Query:    17 PDTAAVV--RRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNK 74
             PDT  V   RRS N QPS W+H +L S+   + SE+     + LK KVK+M ++   +  
Sbjct:    38 PDTTLVELSRRSGNYQPSPWNHCYLLSIENKYASETEVITRDVLKKKVKSMLDDEKKSR- 96

Query:    75 PLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDK-WK---NENLYATSLEFRLLRQ 130
              L+QLELID+LQ+L ++YHFE EI   L +++       WK    E+L+ATSLEFRLLRQ
Sbjct:    97 -LEQLELIDDLQKLGVSYHFEIEINDTLTDLHLKMGRNCWKCDKEEDLHATSLEFRLLRQ 155

Query:   131 HGYNVSQ 137
             HG++VS+
Sbjct:   156 HGFDVSE 162

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016099 "monoterpenoid biosynthetic process" evidence=IDA

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0050551 "myrcene synthase activity" evidence=IDA

TAIR|locus:2086014 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 59/127 (46%), Positives = 82/127 (64%)

Query:    17 PDTAAVV--RRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNK 74
             PDT  V   RRS N QPS W+H +L S+   + SE+     + LK KVK+M ++   +  
Sbjct:    38 PDTTLVELSRRSGNYQPSPWNHCYLLSIENKYASETEVITRDVLKKKVKSMLDDEKKSR- 96

Query:    75 PLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDK-WK---NENLYATSLEFRLLRQ 130
              L+QLELID+LQ+L ++YHFE EI   L +++       WK    E+L+ATSLEFRLLRQ
Sbjct:    97 -LEQLELIDDLQKLGVSYHFEIEINDTLTDLHLKMGRNCWKCDKEEDLHATSLEFRLLRQ 155

Query:   131 HGYNVSQ 137
             HG++VS+
Sbjct:   156 HGFDVSE 162

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016099 "monoterpenoid biosynthetic process" evidence=ISS;IDA

GO:0016829 "lyase activity" evidence=IEA

GO:0034768 "(E)-beta-ocimene synthase activity" evidence=IDA

GO:0050551 "myrcene synthase activity" evidence=IDA

UNIPROTKB|B5A434 B5A434 "(+)-alpha-terpineol synthase" [Santalum album (taxid:35974)]

 Score = 243 (90.6 bits), Expect = 9.7e-20, P = 9.7e-20
 Identities = 57/136 (41%), Positives = 83/136 (61%)

Query:     7 KPAQCFASAQP---DTAAVVRRSANNQPSIWDHDFLHSL--SCNFTSESYKKQGEHLKGK 61
             K   C A   P   + ++  RR++N +PS WD++FL SL  S N   E + K  E LK +
Sbjct:    14 KAVNCIAHVTPMAGEDSSENRRASNYKPSTWDYEFLQSLATSHNTVQEKHMKMAEKLKEE 73

Query:    62 VKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYAT 121
             VK+M   +    +P+ +LELI+ LQRL L Y FE+EI+  L ++Y +  D W  +NL+AT
Sbjct:    74 VKSM---IKGQMEPVAKLELINILQRLGLKYRFESEIKEELFSLYKDGTDAWWVDNLHAT 130

Query:   122 SLEFRLLRQHGYNVSQ 137
             +L FRLLR++G  V Q
Sbjct:   131 ALRFRLLRENGIFVPQ 146

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030969001 SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (593 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	137
cd00684	542	cd00684, Terpene_cyclase_plant_C1, Plant Terpene C	4e-38
pfam01397	177	pfam01397, Terpene_synth, Terpene synthase, N-term	6e-38
PLN02279	784	PLN02279, PLN02279, ent-kaur-16-ene synthase	5e-07
PLN02592	800	PLN02592, PLN02592, ent-copalyl diphosphate syntha	7e-06

>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1

 Score =  134 bits (340), Expect = 4e-38
 Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 3/117 (2%)

Query: 24  RRSANNQPSIWDHDFLHSLSCNFTSES-YKKQGEHLKGKVKTMTNEVSVTNKPLDQLELI 82
           R SAN  PS+W  D   SLS +++ E   +++ E LK +V+ M  +        ++L LI
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLI 60

Query: 83  DNLQRLRLAYHFETEIESILHNIYNNKDDKWKNE--NLYATSLEFRLLRQHGYNVSQ 137
           D LQRL ++YHFE EI+ IL  IY    ++ ++   +LY T+L FRLLRQHGYNVS 
Sbjct: 61  DRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSS 117

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542

>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain

 Score =  126 bits (319), Expect = 6e-38
 Identities = 51/106 (48%), Positives = 65/106 (61%), Gaps = 4/106 (3%)

Query: 34  WDHDFL-HSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAY 92
           W  DFL ++       E   ++ E LK +V+ M    S     L+QLELID LQRL ++Y
Sbjct: 1   WGDDFLSYTADMQTEDEKCLERLESLKEEVRKMLP--SSYPDLLEQLELIDALQRLGISY 58

Query: 93  HFETEIESILHNIYNNKDDKWKNE-NLYATSLEFRLLRQHGYNVSQ 137
           HFE EI+ IL  IY N DD  + E +LY T+L FRLLRQHGY+VS 
Sbjct: 59  HFEKEIKEILDQIYRNWDDNDEEEDDLYTTALAFRLLRQHGYDVSS 104

It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase. Length = 177

>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 13/71 (18%)

Query: 75  PLDQ---LELIDNLQRLRLAYHFETEIESILHNIYNNKDDKW--KNENLYA----TSLEF 125
           PLDQ   L ++D L+RL +  HF  EI+S+L   Y      W    E ++      +L F
Sbjct: 267 PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYR----YWLQGEEEIFLDLATCALAF 322

Query: 126 RLLRQHGYNVS 136
           R+LR +GY+VS
Sbjct: 323 RILRLNGYDVS 333

Length = 784

>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase

 Score = 43.7 bits (103), Expect = 7e-06
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 10/72 (13%)

Query: 75  PLDQLELI---DNLQRLRLAYHFETEIESILHNIYNNKDDK---W-KNENLYA---TSLE 124
           P+D  E I   D LQRL ++ +FE EI+  +  ++    +    W +N +++    T++ 
Sbjct: 307 PVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMG 366

Query: 125 FRLLRQHGYNVS 136
           FRLLR HG+ VS
Sbjct: 367 FRLLRLHGHQVS 378

Length = 800

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
PF01397	183	Terpene_synth: Terpene synthase, N-terminal domain	100.0
cd00684	542	Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C	100.0
PLN02279	784	ent-kaur-16-ene synthase	99.77
PLN02592	800	ent-copalyl diphosphate synthase	99.75

>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family

Probab=100.00  E-value=2.2e-36  Score=235.64  Aligned_cols=102  Identities=50%  Similarity=0.839  Sum_probs=83.6

Q ss_pred             CCcCccccCCCCC------ChhHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048325           34 WDHDFLHSLSCNF------TSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYN  107 (137)
Q Consensus        34 W~~~fl~s~~~~~------~~e~~~~~~e~LKeeVr~mL~~~~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~  107 (137)
                      |||+|++++.+.+      ..+++.+++++||++||.||....  .++.++|+|||+||||||+|||++||+++|+++|.
T Consensus         1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~--~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~   78 (183)
T PF01397_consen    1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASY--PDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYR   78 (183)
T ss_dssp             TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSS--SHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHH
T ss_pred             CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhh
Confidence            9999996433322      247889999999999999999873  48999999999999999999999999999999998


Q ss_pred             cCCCCC-CCCChHHHHHHHHHhhhCCCCCCC
Q 048325          108 NKDDKW-KNENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus       108 ~~~~~~-~~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      .+.... ...|||+|||+|||||||||+|||
T Consensus        79 ~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~  109 (183)
T PF01397_consen   79 SWDEDNEEIDDLYTTALRFRLLRQHGYYVSS  109 (183)
T ss_dssp             TTTTTSHTSSCHHHHHHHHHHHHHTT----G
T ss_pred             hccccccccCchhHHHHHHHHHHHcCCcccH
Confidence            755421 125999999999999999999996

It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1

Probab=100.00  E-value=1.2e-34  Score=254.83  Aligned_cols=112  Identities=46%  Similarity=0.748  Sum_probs=94.8

Q ss_pred             CCCCCCCCCCCCcCccccCCCCCChh-HHHHHHHHHHHHHHHHhhhc--cCCCCchhhHHHHHHHHhcCcccchHHHHHH
Q 048325           24 RRSANNQPSIWDHDFLHSLSCNFTSE-SYKKQGEHLKGKVKTMTNEV--SVTNKPLDQLELIDNLQRLRLAYHFETEIES  100 (137)
Q Consensus        24 r~~a~~~PsiW~~~fl~s~~~~~~~e-~~~~~~e~LKeeVr~mL~~~--~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~  100 (137)
                      |++++|+||+||++++.++.....+. .+.+++++||++||+||...  .  .|+.++|+|||+||||||+|||++||++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~--~~~~~~l~liD~lqrLGi~~hF~~EI~~   78 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYP--VDLFERLWLIDRLQRLGISYHFEDEIKE   78 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccC--CCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence            68899999999995555444444333 78899999999999999873  3  7899999999999999999999999999


Q ss_pred             HHHHHHhcCCCC--CCCCChHHHHHHHHHhhhCCCCCCC
Q 048325          101 ILHNIYNNKDDK--WKNENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus       101 ~L~~i~~~~~~~--~~~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      +|+.||+.+...  ....|||+|||+|||||||||+|||
T Consensus        79 ~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~  117 (542)
T cd00684          79 ILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSS  117 (542)
T ss_pred             HHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCH
Confidence            999999865321  1236999999999999999999996

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi

>PLN02279 ent-kaur-16-ene synthase

Probab=99.77  E-value=4.8e-19  Score=162.29  Aligned_cols=65  Identities=34%  Similarity=0.520  Sum_probs=57.0

Q ss_pred             CCchhhHHHHHHHHhcCcccchHHHHHHHHHHHHhcCCCCC--CCCChHHHHHHHHHhhhCCCCCCC
Q 048325           73 NKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKW--KNENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus        73 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~--~~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      .+..+++.+||+||||||+|||++||+++|+.+|+.+....  ...|||+|||+|||||||||+|||
T Consensus       268 ~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~  334 (784)
T PLN02279        268 LDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSS  334 (784)
T ss_pred             ccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCCh
Confidence            46899999999999999999999999999999998543211  126999999999999999999996

>PLN02592 ent-copalyl diphosphate synthase

Probab=99.75  E-value=1.1e-18  Score=160.11  Aligned_cols=65  Identities=31%  Similarity=0.504  Sum_probs=56.2

Q ss_pred             CCchhhHHHHHHHHhcCcccchHHHHHHHHHHHHhcCCC---CC--C--CCChHHHHHHHHHhhhCCCCCCC
Q 048325           73 NKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDD---KW--K--NENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus        73 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~---~~--~--~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      .++.++|+|||+||||||+|||++||+++|+.+|..+..   .+  .  ..|||+|||+|||||||||+|||
T Consensus       308 ~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~  379 (800)
T PLN02592        308 VDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSA  379 (800)
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCCh
Confidence            478999999999999999999999999999999973211   01  1  26999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
1n1b_A	549	Crystal Structure Of (+)-bornyl Diphosphate Synthas		4e-18
3g4d_A	554	Crystal Structure Of (+)-Delta-Cadinene Synthase Fr		5e-18
3n0f_A	555	Crystal Structure Of Isoprene Synthase From Grey Po		1e-17
3m01_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		2e-17
3lz9_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		2e-17
1hx9_A	548	Crystal Structure Of Teas W273s Form 1 Length = 548		2e-17
1hxg_A	548	Crystal Structure Of Teas W273sC440W Length = 548		2e-17
5eau_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		2e-17
1hxc_A	548	Crystal Structure Of Teas C440w Length = 548		2e-17
5eat_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		4e-17
5eas_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		4e-17
4di5_A	535	Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt		4e-17
2ong_A	543	Crystal Structure Of Of Limonene Synthase With 2- F		6e-16
2j5c_A	569	Rational Conversion Of Substrate And Product Specif		2e-14
3s9v_A	785	Abietadiene Synthase From Abies Grandis Length = 78		2e-07
3sae_A	817	Structure Of A Three-Domain Sesquiterpene Synthase:		3e-07
3pya_A	727	Crystal Structure Of Ent-Copalyl Diphosphate Syntha		2e-06
3p5p_A	764	Crystal Structure Of Taxadiene Synthase From Pacifi		2e-06

>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 73/119 (61%), Gaps = 7/119 (5%)
Query: 23  VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELI 82
           +RRS N QP++WD +++ SL+  +T E +  +   L  +V+ +  E     +P+ QLELI
Sbjct: 5   IRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKE---KMEPVQQLELI 61
Query: 83  DNLQRLRLAYHFETEIESILHNIYNNKDDKWKNE----NLYATSLEFRLLRQHGYNVSQ 137
            +L+ L L+  F+ EI+ IL  IYN       NE    +LY T+L FRLLRQHG+N+SQ
Sbjct: 62  HDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQ 120

>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 71/114 (62%), Gaps = 5/114 (4%)
Query: 23  VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELI 82
           +R  A+ QPSIW   FL+    N  +E+ +K+ + LK +V+ M   V+       +L  I
Sbjct: 21  MRPKADFQPSIWGDLFLNCPDKNIDAET-EKRHQQLKEEVRKMI--VAPMANSTQKLAFI 77
Query: 83  DNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
           D++QRL ++YHF  EIE  L NIY+N +D     +LY TS+ FRLLR+HGYNVS
Sbjct: 78  DSVQRLGVSYHFTKEIEDELENIYHNNND--AENDLYTTSIRFRLLREHGYNVS 129

>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 23  VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELI 82
            RRSA+ +P+ WD+DFL S   + + E YK + + L+ +V+   N      + L  LELI
Sbjct: 14  ARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKA--EFLTLLELI 71
Query: 83  DNLQRLRLAYHFETEIESILHNIYNNKD-DKWKNENLYATSLEFRLLRQHGYNVSQ 137
           DN+QRL L Y FE++I   L    ++   D     +L+AT+L FRLLRQHG+ VSQ
Sbjct: 72  DNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ 127

>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22  VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
           +VR  A+  PS+W   FL     N  +E Y K+ E LK + + M   ++   K  D L L
Sbjct: 15  IVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 72
Query: 82  IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
           ID ++RL ++YHFE EI+ IL  IYN   +     +L  ++L+FRLLRQHG+N+S
Sbjct: 73  IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 124

>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22  VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
           +VR  A+  PS+W   FL     N  +E Y K+ E LK + + M   ++   K  D L L
Sbjct: 15  IVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 72
Query: 82  IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
           ID ++RL ++YHFE EI+ IL  IYN   +     +L  ++L+FRLLRQHG+N+S
Sbjct: 73  IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 124

>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22  VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
           +VR  A+  PS+W   FL     N  +E Y K+ E LK + + M   ++   K  D L L
Sbjct: 13  IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 70
Query: 82  IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
           ID ++RL ++YHFE EI+ IL  IYN   +     +L  ++L+FRLLRQHG+N+S
Sbjct: 71  IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 122

>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22  VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
           +VR  A+  PS+W   FL     N  +E Y K+ E LK + + M   ++   K  D L L
Sbjct: 13  IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 70
Query: 82  IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
           ID ++RL ++YHFE EI+ IL  IYN   +     +L  ++L+FRLLRQHG+N+S
Sbjct: 71  IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 122

>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22  VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
           +VR  A+  PS+W   FL     N  +E Y K+ E LK + + M   ++   K  D L L
Sbjct: 13  IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 70
Query: 82  IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
           ID ++RL ++YHFE EI+ IL  IYN   +     +L  ++L+FRLLRQHG+N+S
Sbjct: 71  IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 122

>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 22  VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
           +VR  A+  PS+W   FL     N  +E Y K+ E LK + + M   ++   K  D L L
Sbjct: 13  IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNL 70
Query: 82  IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
           ID ++RL ++YHFE EI+ IL  IYN   +     +L  ++L+FRLLRQHG+N+S
Sbjct: 71  IDTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 122

>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 5/115 (4%)
Query: 22  VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
           +VR  A+  PS+W   FL     N  +E Y ++ E LK + ++M   ++   K  D L L
Sbjct: 13  IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSML--LATGRKLADTLNL 70
Query: 82  IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
           ID ++RL ++YHFE EI+ IL  IYN   +     +L  ++L+FRLLRQHG+N+S
Sbjct: 71  IDIIERLGISYHFEKEIDEILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 122

>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 5/115 (4%)
Query: 22  VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
           +VR  A+  PS+W   FL     N  +E Y ++ E LK + ++M   ++   K  D L L
Sbjct: 13  IVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSML--LATGRKLADTLNL 70
Query: 82  IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
           ID ++RL ++YHFE EI+ IL  IYN   +     +L  ++L+FRLLRQHG+N+S
Sbjct: 71  IDIIERLGISYHFEKEIDEILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 122

>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Query: 23  VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELI 82
           VR  A+  PS+W   FL     N  +E Y K+ E LK + + M   ++   K  D L LI
Sbjct: 1   VRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNML--LATGMKLADTLNLI 58
Query: 83  DNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
           D ++RL ++YHFE EI+ IL  IYN   +     +L  ++L+FRLLRQHG+N+S
Sbjct: 59  DTIERLGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNIS 109

>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 10/121 (8%)
Query: 23  VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELI 82
           +RRS N  PS WD +F+ SL  ++  + +  +   L   VK    E+      + QLELI
Sbjct: 1   MRRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKM---ELEKETDQIRQLELI 57
Query: 83  DNLQRLRLAYHFETEIESIL------HNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVS 136
           D+LQR+ L+ HF+ E + IL      H+ Y N   K +  +LY+TSL FRLLR+HG+ V+
Sbjct: 58  DDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPK-EERDLYSTSLAFRLLREHGFQVA 116
Query: 137 Q 137
           Q
Sbjct: 117 Q 117

>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 8/115 (6%)
Query: 25  RSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDN 84
           R+   QP++WD   + S    +  E +  +   +  +VK M  E       + +LELID+
Sbjct: 36  RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQE---EVDSIRRLELIDD 92
Query: 85  LQRLRLAYHFETEIESILHNIY--NNKDDKWKNENLYATSLEFRLLRQHGYNVSQ 137
           L+RL ++ HFE EI  IL++ Y  NN+ D+    +LY+T+L FRLLRQ+ ++VSQ
Sbjct: 93  LRRLGISCHFEREIVEILNSKYYTNNEIDE---RDLYSTALRFRLLRQYDFSVSQ 144

>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 34/135 (25%)
Query: 12  FASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSV 71
           F S+   TAAV  R+ N +      DFL     NF     KK G H+             
Sbjct: 228 FLSSPASTAAVFMRTGNKKCL----DFL-----NFV---LKKFGNHVP------------ 263
Query: 72  TNKPLDQLE---LIDNLQRLRLAYHFETEIESILHNIYNNKDDK---WKNEN----LYAT 121
            + PLD  E    +D ++RL +  HF+ EI+  L  +Y++ D++   W  EN    +  T
Sbjct: 264 CHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDT 323
Query: 122 SLEFRLLRQHGYNVS 136
           ++  R+LR HGYNVS
Sbjct: 324 AMGLRILRLHGYNVS 338

>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 35  DHDFLHS---LSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLE---LIDNLQRL 88
           D  FL S    +C F      K  E L   +    N V     P+D LE   ++DN+ RL
Sbjct: 253 DGSFLSSPASTACVFMHTGDAKCLEFLNSVMIKFGNFVPCLY-PVDLLERLLIVDNIVRL 311
Query: 89  RLAYHFETEIESILHNIY---NNKDDKWKNEN----LYATSLEFRLLRQHGYNVS 136
            +  HFE EI+  L  +Y   N +   W   N    L  T+L FRLLR H YNVS
Sbjct: 312 GIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVS 366

>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 56  EHLKGKVKTMTNEVSVTNKPLDQLE---LIDNLQRLRLAYHFETEIESIL---HNIYNNK 109
           E+L+  VK     V     P+D  E   ++D LQRL ++ +FE EI+  L   H  + + 
Sbjct: 224 EYLRNAVKRFNGGVPNVF-PVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDN 282
Query: 110 DDKWKN----ENLYATSLEFRLLRQHGYNVS 136
              W      +++  T++ FRLLRQHGY VS
Sbjct: 283 GICWARCSHVQDIDDTAMAFRLLRQHGYQVS 313

>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 76  LDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDK---WKNENLY----ATSLEFRLL 128
           L++L L+DN++ L +  HF+ EI+  L  +Y +  ++   W  ++L      T+L  R L
Sbjct: 247 LERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTL 306
Query: 129 RQHGYNVS 136
           R HGYNVS
Sbjct: 307 RMHGYNVS 314

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	2e-34
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	2e-33
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	2e-33
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	9e-33
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	4e-32
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	2e-31
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	6e-23
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	4e-18
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	8e-10
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	1e-17
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	5e-17

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569

 Score =  124 bits (311), Expect = 2e-34
 Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 4/125 (3%)

Query: 13  ASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVT 72
                D      R+   QP++WD   + S    +  E +  +   +  +VK M  E    
Sbjct: 24  DLYDDDDKDRWIRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQE---E 80

Query: 73  NKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHG 132
              + +LELID+L+RL ++ HFE EI  IL++ Y   +++    +LY+T+L FRLLRQ+ 
Sbjct: 81  VDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYT-NNEIDERDLYSTALRFRLLRQYD 139

Query: 133 YNVSQ 137
           ++VSQ
Sbjct: 140 FSVSQ 144

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550

 Score =  121 bits (305), Expect = 2e-33
 Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 13  ASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVT 72
           A+       +VR  A+  PS+W   FL     N  +E Y K+ E LK + + M   ++  
Sbjct: 6   AAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNM--LLATG 63

Query: 73  NKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHG 132
            K  D L LID ++RL ++YHFE EI+ IL  IYN   +     +L  ++L+FRLLRQHG
Sbjct: 64  MKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN---DLCTSALQFRLLRQHG 120

Query: 133 YNVSQ 137
           +N+S 
Sbjct: 121 FNISP 125

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549

 Score =  121 bits (304), Expect = 2e-33
 Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 7/120 (5%)

Query: 22  VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLEL 81
            +RRS N QP++WD +++ SL+  +T E +  +   L  +V+ +  E     +P+ QLEL
Sbjct: 4   QIRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKE---KMEPVQQLEL 60

Query: 82  IDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNE----NLYATSLEFRLLRQHGYNVSQ 137
           I +L+ L L+  F+ EI+ IL  IYN       NE    +LY T+L FRLLRQHG+N+SQ
Sbjct: 61  IHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQ 120

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543

 Score =  119 bits (299), Expect = 9e-33
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 8/120 (6%)

Query: 23  VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELI 82
           +RRS N  PS WD +F+ SL  ++  + +  +   L   VK    +       + QLELI
Sbjct: 1   MRRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEK---ETDQIRQLELI 57

Query: 83  DNLQRLRLAYHFETEIESILHNIYNN-----KDDKWKNENLYATSLEFRLLRQHGYNVSQ 137
           D+LQR+ L+ HF+ E + IL +IY +          +  +LY+TSL FRLLR+HG+ V+Q
Sbjct: 58  DDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQ 117

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555

 Score =  117 bits (295), Expect = 4e-32
 Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 3/126 (2%)

Query: 13  ASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVT 72
           +       +  RRSA+ +P+ WD+DFL S   + + E YK + + L+ +V+   N     
Sbjct: 4   SHHHHHHGSEARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINN--EK 61

Query: 73  NKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNN-KDDKWKNENLYATSLEFRLLRQH 131
            + L  LELIDN+QRL L Y FE++I   L    ++   D     +L+AT+L FRLLRQH
Sbjct: 62  AEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQH 121

Query: 132 GYNVSQ 137
           G+ VSQ
Sbjct: 122 GFEVSQ 127

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554

 Score =  116 bits (290), Expect = 2e-31
 Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 5/135 (3%)

Query: 3   MSKYKPAQCFASAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKV 62
           M+        +S        +R  A+ QPSIW   FL+    N      +K+ + LK +V
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPDKNID-AETEKRHQQLKEEV 59

Query: 63  KTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNENLYATS 122
           + M            +L  ID++QRL ++YHF  EIE  L NIY+N +D     +LY TS
Sbjct: 60  RKMIVAP--MANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAEN--DLYTTS 115

Query: 123 LEFRLLRQHGYNVSQ 137
           + FRLLR+HGYNVS 
Sbjct: 116 IRFRLLREHGYNVSC 130

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727

 Score = 92.2 bits (228), Expect = 6e-23
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 13/121 (10%)

Query: 24  RRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELID 83
             S    PS     F+ +   N   E  +   +   G V  +           + + ++D
Sbjct: 200 DGSFLFSPSSTAFAFMQTRDSNCL-EYLRNAVKRFNGGVPNVFP-----VDLFEHIWIVD 253

Query: 84  NLQRLRLAYHFETEIESILHNIYNNKDDKW-------KNENLYATSLEFRLLRQHGYNVS 136
            LQRL ++ +FE EI+  L  ++    D           +++  T++ FRLLRQHGY VS
Sbjct: 254 RLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVS 313

Query: 137 Q 137
            
Sbjct: 314 A 314

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817

 Score = 78.4 bits (192), Expect = 4e-18
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 22  VVRRSANNQPSIWDHDFLHSLS---CNFTSESYKKQGEHLKGKVKTMTNEVSVTN--KPL 76
           +V      +    D  FL S +   C F      K  E L   +    N V        L
Sbjct: 240 IVEWERIMEVQSQDGSFLSSPASTACVFMHTGDAKCLEFLNSVMIKFGNFVPCLYPVDLL 299

Query: 77  DQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDKW-------KNENLYATSLEFRLLR 129
           ++L ++DN+ RL +  HFE EI+  L  +Y + +++           +L  T+L FRLLR
Sbjct: 300 ERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLR 359

Query: 130 QHGYNVSQ 137
            H YNVS 
Sbjct: 360 LHRYNVSP 367

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817

 Score = 54.6 bits (130), Expect = 8e-10
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 13/137 (9%)

Query: 14  SAQPDTAAVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTN 73
                T+ ++RR+AN  P++W +D +HSL   +   SY+++ E L  ++K M N     +
Sbjct: 15  CDLSSTSGLIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLNPAITGD 74

Query: 74  KPLDQLELIDNLQRLRL--------AYHFETEIESILHNIYNNK-----DDKWKNENLYA 120
                     +   +             F   ++ IL N   +           ++ L A
Sbjct: 75  GESMITPSAYDTAWVARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLA 134

Query: 121 TSLEFRLLRQHGYNVSQ 137
           T     +L +      Q
Sbjct: 135 TLSCVLVLLKWNVGDLQ 151

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785

 Score = 77.2 bits (189), Expect = 1e-17
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 34  WDHDFLHSLS---CNFTSESYKKQGEHLKGKVKTMTNEVSVT--NKPLDQLELIDNLQRL 88
            D  FL S +     F     KK  + L   +K   N V         ++L  +D ++RL
Sbjct: 224 KDGSFLSSPASTAAVFMRTGNKKCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERL 283

Query: 89  RLAYHFETEIESILHNIYNNKDDK-------WKNENLYATSLEFRLLRQHGYNVSQ 137
            +  HF+ EI+  L  +Y++ D++           ++  T++  R+LR HGYNVS 
Sbjct: 284 GIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSS 339

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764

 Score = 75.3 bits (184), Expect = 5e-17
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 14/123 (11%)

Query: 24  RRSANNQPSIWDHDFLHSLSCN---FTSESYKKQGEHLKGKVKTMTNEV--SVTNKPLDQ 78
            +    Q    D  FL S +       +   +K    L   +      V    +   L++
Sbjct: 192 NKIMRFQS--KDGSFLSSPASTACVLMNTGDEKCFTFLNNLLDKFGGCVPCMYSIDLLER 249

Query: 79  LELIDNLQRLRLAYHFETEIESILHNIYNNKDDKWKNEN-------LYATSLEFRLLRQH 131
           L L+DN++ L +  HF+ EI+  L  +Y +  ++            L  T+L  R LR H
Sbjct: 250 LSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMH 309

Query: 132 GYN 134
           GYN
Sbjct: 310 GYN 312

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	100.0
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	100.0
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	100.0
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	100.0
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	100.0
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	100.0
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	99.83
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	99.81
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	99.81
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	99.81
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	97.96

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*

Probab=100.00  E-value=3.2e-38  Score=277.78  Aligned_cols=112  Identities=42%  Similarity=0.683  Sum_probs=92.8

Q ss_pred             cccCCCCCCCCCCCCcCccccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHhcCcccchHHHHHH
Q 048325           21 AVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIES  100 (137)
Q Consensus        21 ~~~r~~a~~~PsiW~~~fl~s~~~~~~~e~~~~~~e~LKeeVr~mL~~~~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~  100 (137)
                      ++.||++||+||+|||+|+++ ...+..+.+.+++++||++||+||..+.  +++.++|+|||+||||||+|||++||++
T Consensus        19 ~~~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~--~~~~~~l~lID~lqrLGi~~hF~~EI~~   95 (554)
T 3g4d_A           19 DEMRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPM--ANSTQKLAFIDSVQRLGVSYHFTKEIED   95 (554)
T ss_dssp             ------CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCC--SSHHHHHHHHHHHHHTTCGGGCHHHHHH
T ss_pred             CCCCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcc--cCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence            568999999999999999997 5555677899999999999999997633  6899999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCChHHHHHHHHHhhhCCCCCCC
Q 048325          101 ILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus       101 ~L~~i~~~~~~~~~~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      +|+.+|.....  ...|||+|||+|||||||||+|||
T Consensus        96 ~L~~i~~~~~~--~~~dl~~~al~FRlLR~hGy~VS~  130 (554)
T 3g4d_A           96 ELENIYHNNND--AENDLYTTSIRFRLLREHGYNVSC  130 (554)
T ss_dssp             HHHHHHHSCCC--TTCCHHHHHHHHHHHHHTTCCCCG
T ss_pred             HHHHHHhccCC--CCCCHHHHHHHHHHHHhcCCCCCh
Confidence            99999975211  226999999999999999999996

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*

Probab=100.00  E-value=2.3e-38  Score=278.52  Aligned_cols=112  Identities=42%  Similarity=0.704  Sum_probs=99.4

Q ss_pred             cccCCCCCCCCCCCCcCccccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHhcCcccchHHHHHH
Q 048325           21 AVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIES  100 (137)
Q Consensus        21 ~~~r~~a~~~PsiW~~~fl~s~~~~~~~e~~~~~~e~LKeeVr~mL~~~~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~  100 (137)
                      ++.||+|||+||+|||+|++++...+..+.+.+++++||++||+||..+.  .++.++|+|||+||||||+|||++||++
T Consensus        14 ~~~R~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~--~~~~~~L~lID~lqrLGi~~hF~~EI~~   91 (550)
T 3m00_A           14 EIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATG--MKLADTLNLIDTIERLGISYHFEKEIDD   91 (550)
T ss_dssp             --CCCCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSS--CCHHHHHHHHHHHHHTTCGGGCHHHHHH
T ss_pred             ccCCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcc--cCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence            45899999999999999999766555567889999999999999997632  6899999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCChHHHHHHHHHhhhCCCCCCC
Q 048325          101 ILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus       101 ~L~~i~~~~~~~~~~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      +|+.+|..+..   ..|||+|||+|||||||||+|||
T Consensus        92 ~L~~i~~~~~~---~~dl~~~al~FRLLR~hGy~VS~  125 (550)
T 3m00_A           92 ILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNISP  125 (550)
T ss_dssp             HHHHHHHHCCC---CSSHHHHHHHHHHHHHTTCCCCG
T ss_pred             HHHHHHHhccc---CCCHHHHHHHHHHHHhcCCCCCh
Confidence            99999986543   37999999999999999999996

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*

Probab=100.00  E-value=1.9e-37  Score=272.88  Aligned_cols=112  Identities=44%  Similarity=0.670  Sum_probs=93.0

Q ss_pred             cCCCCCCCCCCCCcCccccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCC-CchhhHHHHHHHHhcCcccchHHHHHHH
Q 048325           23 VRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTN-KPLDQLELIDNLQRLRLAYHFETEIESI  101 (137)
Q Consensus        23 ~r~~a~~~PsiW~~~fl~s~~~~~~~e~~~~~~e~LKeeVr~mL~~~~~~~-~~~~~L~lID~lqRLGi~yhFe~EI~~~  101 (137)
                      .|++|||+||+|||+|++++...+..+.+.+++++||++||+||...   . ++.++|+|||+||||||+|||++||+++
T Consensus        14 ~~~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~---~~~~~~~L~lID~lqRLGi~~hF~~EI~~~   90 (555)
T 3n0f_A           14 ARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNE---KAEFLTLLELIDNVQRLGLGYRFESDIRRA   90 (555)
T ss_dssp             ---CCCCCCCTTCHHHHTCC-----CHHHHHHHHHHHHHHHHHHHCT---TSCHHHHHHHHHHHHHTTCGGGSHHHHHHH
T ss_pred             cCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhc---ccCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence            69999999999999999987666667889999999999999999765   6 8999999999999999999999999999


Q ss_pred             HHHHHhcCC-CCCCCCChHHHHHHHHHhhhCCCCCCC
Q 048325          102 LHNIYNNKD-DKWKNENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus       102 L~~i~~~~~-~~~~~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      |+.||.... ..+...|||+|||+|||||||||+|||
T Consensus        91 L~~i~~~~~~~~~~~~DL~~~Al~FRLLR~hGy~VS~  127 (555)
T 3n0f_A           91 LDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ  127 (555)
T ss_dssp             HHHHHHTCHHHHHTTTCHHHHHHHHHHHHHTTCCCCG
T ss_pred             HHHHHhhccccccccCCHHHHHHHHHHHHhcCCCcCh
Confidence            999997410 001236999999999999999999996

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*

Probab=100.00  E-value=4.6e-37  Score=269.40  Aligned_cols=111  Identities=41%  Similarity=0.667  Sum_probs=98.9

Q ss_pred             CCCCCCCCCCCCcCccccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHhcCcccchHHHHHHHHH
Q 048325           24 RRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILH  103 (137)
Q Consensus        24 r~~a~~~PsiW~~~fl~s~~~~~~~e~~~~~~e~LKeeVr~mL~~~~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~  103 (137)
                      ||++||+||+||++|++++...+..+++.++++.||++||+||..+   .|+.++|+|||+||||||+|||++||+++|+
T Consensus         2 r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~V~~~~~~~---~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~   78 (543)
T 2ong_A            2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKE---TDQIRQLELIDDLQRMGLSDHFQNEFKEILS   78 (543)
T ss_dssp             CCCCCCCCCSSCHHHHHHCCCSSCSTHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTGGGTTHHHHHHHHH
T ss_pred             CCCCCCCCCcCCcccccCCCchhhhhHHHHHHHHHHHHHHHHHhcc---cCHHHHHHHHHHHHhCCchhhhHHHHHHHHH
Confidence            8999999999999999976555666789999999999999999887   6899999999999999999999999999999


Q ss_pred             HHHhcCCCC----CC-CCChHHHHHHHHHhhhCCCCCCC
Q 048325          104 NIYNNKDDK----WK-NENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus       104 ~i~~~~~~~----~~-~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      .||..+...    .. ..|||+|||+|||||||||+|||
T Consensus        79 ~i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~  117 (543)
T 2ong_A           79 SIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQ  117 (543)
T ss_dssp             HHHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCG
T ss_pred             HHHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccH
Confidence            999764321    01 36999999999999999999996

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}

Probab=100.00  E-value=2.5e-37  Score=272.58  Aligned_cols=112  Identities=37%  Similarity=0.612  Sum_probs=75.1

Q ss_pred             cccCCCCCCCCCCCCcCccccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHhcCcccchHHHHHH
Q 048325           21 AVVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIES  100 (137)
Q Consensus        21 ~~~r~~a~~~PsiW~~~fl~s~~~~~~~e~~~~~~e~LKeeVr~mL~~~~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~  100 (137)
                      +..|+++||+||+||++|++++...+..+++.++++.||++||+||..+   .++.++|+|||+||||||+|||++||++
T Consensus        32 ~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~Vr~~~~~~---~d~~~~l~lID~lqrLGi~~hFe~EI~~  108 (569)
T 2j5c_A           32 DRWIRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEE---VDSIRRLELIDDLRRLGISCHFEREIVE  108 (569)
T ss_dssp             ------------------------------CHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred             cccCCCCCCCCCcCCcccccCCCchhhhHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHhCCchhhhHHHHHH
Confidence            5689999999999999999976555556678899999999999999887   6899999999999999999999999999


Q ss_pred             HHHHHH-hcCCCCCCCCChHHHHHHHHHhhhCCCCCCC
Q 048325          101 ILHNIY-NNKDDKWKNENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus       101 ~L~~i~-~~~~~~~~~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      +|+.|| +....  ...|||+|||+|||||||||+|||
T Consensus       109 ~L~~i~~~~~~~--~~~Dl~~~al~FRlLR~hGy~Vs~  144 (569)
T 2j5c_A          109 ILNSKYYTNNEI--DERDLYSTALRFRLLRQYDFSVSQ  144 (569)
T ss_dssp             HHHHHTTSSCCS--CTTCHHHHHHHHHHHHHTTCCCCG
T ss_pred             HHHHHHHhccCc--ccCChhhhhHHhHHHHhcCCCcCH
Confidence            999999 65322  236999999999999999999996

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*

Probab=100.00  E-value=7.2e-37  Score=268.64  Aligned_cols=113  Identities=42%  Similarity=0.684  Sum_probs=89.1

Q ss_pred             ccCCCCCCCCCCCCcCccccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHhcCcccchHHHHHHH
Q 048325           22 VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESI  101 (137)
Q Consensus        22 ~~r~~a~~~PsiW~~~fl~s~~~~~~~e~~~~~~e~LKeeVr~mL~~~~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~  101 (137)
                      +.||++||+||+||++|+++++..+..+++.++++.||++||+|+..+   .++.++|+|||+||||||+|||++||+++
T Consensus         4 ~~r~~~~~~ps~W~~~fl~s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~---~d~~~~l~lvD~lqrLGi~~hF~~EI~~~   80 (549)
T 1n1b_A            4 QIRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEK---MEPVQQLELIHDLKYLGLSDFFQDEIKEI   80 (549)
T ss_dssp             -----------CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred             cCCCCCCCCCCCCCCCcccCCCcchhhhHHHHHHHHHHHHHHHHHhcc---cCHHHHHHhHHHHHhCCchhhhHHHHHHH
Confidence            479999999999999999866555566789999999999999999877   68999999999999999999999999999


Q ss_pred             HHHHHhcCCC--CC--CCCChHHHHHHHHHhhhCCCCCCC
Q 048325          102 LHNIYNNKDD--KW--KNENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus       102 L~~i~~~~~~--~~--~~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      |+.||+.+..  ..  ...|||+|||+|||||||||+|||
T Consensus        81 L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~  120 (549)
T 1n1b_A           81 LGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQ  120 (549)
T ss_dssp             HHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCG
T ss_pred             HHHHHhhhccccccccccCChhhchhhhhHHHhcCCCcCH
Confidence            9999975311  00  136999999999999999999996

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=99.83  E-value=1.3e-20  Score=170.25  Aligned_cols=86  Identities=33%  Similarity=0.463  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHhhhccC--CCCchhhHHHHHHHHhcCcccchHHHHHHHHHHHHhcCCCC----C---CCCChHHHH
Q 048325           52 KKQGEHLKGKVKTMTNEVSV--TNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDK----W---KNENLYATS  122 (137)
Q Consensus        52 ~~~~e~LKeeVr~mL~~~~~--~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~----~---~~~dL~~~A  122 (137)
                      .+..+.|+..|++.......  -.++.++|+|||+||||||+|||++||+++|+.+|+.+...    .   ...|||+||
T Consensus       220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tA  299 (727)
T 3pya_A          220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTA  299 (727)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHH
Confidence            34567788888886543210  14789999999999999999999999999999999753211    0   125999999


Q ss_pred             HHHHHhhhCCCCCCC
Q 048325          123 LEFRLLRQHGYNVSQ  137 (137)
Q Consensus       123 L~FRLLRQhGy~VS~  137 (137)
                      |+|||||||||+|||
T Consensus       300 L~FRLLRqhGy~VS~  314 (727)
T 3pya_A          300 MAFRLLRQHGYQVSA  314 (727)
T ss_dssp             HHHHHHHHTTCCCCG
T ss_pred             HHHHHHHhCCCCCCH
Confidence            999999999999996

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=99.81  E-value=1.4e-20  Score=171.64  Aligned_cols=65  Identities=40%  Similarity=0.622  Sum_probs=56.5

Q ss_pred             CCchhhHHHHHHHHhcCcccchHHHHHHHHHHHHhcCCC---C---CC-CCChHHHHHHHHHhhhCCCCCCC
Q 048325           73 NKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDD---K---WK-NENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus        73 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~---~---~~-~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      .+++++|+|||+||||||+|||++||+++|+.+|+.+..   .   .. ..|||+|||+|||||||||+|||
T Consensus       296 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~  367 (817)
T 3sdr_A          296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSP  367 (817)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCG
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccH
Confidence            478999999999999999999999999999999974322   0   01 25999999999999999999996

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=99.81  E-value=2.1e-20  Score=169.56  Aligned_cols=65  Identities=38%  Similarity=0.702  Sum_probs=56.6

Q ss_pred             CCchhhHHHHHHHHhcCcccchHHHHHHHHHHHHhcCCC---CC--C--CCChHHHHHHHHHhhhCCCCCCC
Q 048325           73 NKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDD---KW--K--NENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus        73 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~---~~--~--~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      .+++++|+|||+||||||+|||++||+++|+.+|+.+..   ..  .  ..|||+|||+|||||||||+|||
T Consensus       244 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~  315 (764)
T 3p5p_A          244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSS  315 (764)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCG
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccH
Confidence            478999999999999999999999999999999975332   00  1  25999999999999999999996

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=99.81  E-value=2.9e-20  Score=169.06  Aligned_cols=65  Identities=34%  Similarity=0.667  Sum_probs=56.7

Q ss_pred             CCchhhHHHHHHHHhcCcccchHHHHHHHHHHHHhcCCCC---C----CCCChHHHHHHHHHhhhCCCCCCC
Q 048325           73 NKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDK---W----KNENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus        73 ~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~---~----~~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                      .+++++|+|||+||||||+|||++||+++|+.+|+.+...   .    ...|||+|||+|||||||||+|||
T Consensus       268 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~  339 (785)
T 3s9v_A          268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSS  339 (785)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCG
T ss_pred             CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCH
Confidence            5789999999999999999999999999999999753321   0    125999999999999999999996

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=97.96  E-value=1.8e-06  Score=79.01  Aligned_cols=46  Identities=37%  Similarity=0.770  Sum_probs=31.3

Q ss_pred             ccCCCCCCCCCCCCcCccccCCCCCChhHHHHHHHHHHHHHHHHhh
Q 048325           22 VVRRSANNQPSIWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTN   67 (137)
Q Consensus        22 ~~r~~a~~~PsiW~~~fl~s~~~~~~~e~~~~~~e~LKeeVr~mL~   67 (137)
                      +.||+|||+||+|+++|++++..++.++.+.+++++|+++||+||.
T Consensus        23 ~~Rrsany~Ps~W~~~~i~sl~~~~~~~~~~~~~~~Lie~VK~~l~   68 (817)
T 3sdr_A           23 LIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLN   68 (817)
T ss_dssp             ------------CHHHHHHTCCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCCCCCCeeeccCCcccchhHHHHHHHHHHHHHHHhc
Confidence            4799999999999999999888777788899999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	137
d1n1ba1	207	a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha	8e-36
d5easa1	197	a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase	2e-33

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  120 bits (302), Expect = 8e-36
 Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 7/109 (6%)

Query: 33  IWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAY 92
           +WD +++ SL+  +T E +  +   L  +V+ +  E     +P+ QLELI +L+ L L+ 
Sbjct: 1   LWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKE---KMEPVQQLELIHDLKYLGLSD 57

Query: 93  HFETEIESILHNIYNNKDDKWKNE----NLYATSLEFRLLRQHGYNVSQ 137
            F+ EI+ IL  IYN       NE    +LY T+L FRLLRQHG+N+SQ
Sbjct: 58  FFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQ 106

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  113 bits (285), Expect = 2e-33
 Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 5/105 (4%)

Query: 33  IWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAY 92
           +W   FL     N  +E Y ++ E LK + ++M   ++   K  D L LID ++RL ++Y
Sbjct: 1   LWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSML--LATGRKLADTLNLIDIIERLGISY 58

Query: 93  HFETEIESILHNIYNNKDDKWKNENLYATSLEFRLLRQHGYNVSQ 137
           HFE EI+ IL  IYN   +     +L  ++L+FRLLRQHG+N+S 
Sbjct: 59  HFEKEIDEILDQIYNQNSNCN---DLCTSALQFRLLRQHGFNISP 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d5easa1	197	5-Epi-aristolochene synthase {Tobacco (Nicotiana t	100.0
d1n1ba1	207	(+)-bornyl diphosphate synthase {Garden sage (Salv	100.0

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=9.7e-39  Score=248.48  Aligned_cols=100  Identities=41%  Similarity=0.712  Sum_probs=91.7

Q ss_pred             CCCcCccccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHhcCcccchHHHHHHHHHHHHhcCCCC
Q 048325           33 IWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNKDDK  112 (137)
Q Consensus        33 iW~~~fl~s~~~~~~~e~~~~~~e~LKeeVr~mL~~~~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~  112 (137)
                      +|||+|++++.+++..+.+.+++++||++||+||.++.  +++.++|+|||+||||||+|||++||+++|+.||..+.. 
T Consensus         1 iWgd~Fl~~~~~~~~~~~~~~~~e~Lk~eVr~ml~~~~--~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~-   77 (197)
T d5easa1           1 LWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATG--RKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSN-   77 (197)
T ss_dssp             CCGGGGSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCTT--CCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCC-
T ss_pred             CCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHcc--cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCC-
Confidence            79999999877666778899999999999999998764  689999999999999999999999999999999987553 


Q ss_pred             CCCCChHHHHHHHHHhhhCCCCCCC
Q 048325          113 WKNENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus       113 ~~~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                        .+|||+|||+|||||||||+|||
T Consensus        78 --~~dl~~~AL~FRLLRqhGy~Vs~  100 (197)
T d5easa1          78 --CNDLCTSALQFRLLRQHGFNISP  100 (197)
T ss_dssp             --CCSHHHHHHHHHHHHHTTCCCCG
T ss_pred             --CCcHHHHHHHHHHHHHcCcccCH
Confidence              37999999999999999999996

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=1.2e-38  Score=249.56  Aligned_cols=102  Identities=40%  Similarity=0.696  Sum_probs=91.7

Q ss_pred             CCCcCccccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHhcCcccchHHHHHHHHHHHHhcC---
Q 048325           33 IWDHDFLHSLSCNFTSESYKKQGEHLKGKVKTMTNEVSVTNKPLDQLELIDNLQRLRLAYHFETEIESILHNIYNNK---  109 (137)
Q Consensus        33 iW~~~fl~s~~~~~~~e~~~~~~e~LKeeVr~mL~~~~~~~~~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~---  109 (137)
                      +|||+|++|+++++.++++.+++++||++||+||.++   .+++++|+|||+||||||+|||++||+++|++||+..   
T Consensus         1 iW~~~fl~sl~~~~~~e~~~~r~e~Lkeevr~ml~~~---~d~~~~L~lID~lqRLGisyhFe~EI~~~L~~i~~~~~~~   77 (207)
T d1n1ba1           1 LWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEK---MEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCF   77 (207)
T ss_dssp             CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHH
T ss_pred             CCCchHHHhCCCCcccHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhchhc
Confidence            7999999988888889999999999999999999887   7899999999999999999999999999999999741   


Q ss_pred             -CCCCCCCChHHHHHHHHHhhhCCCCCCC
Q 048325          110 -DDKWKNENLYATSLEFRLLRQHGYNVSQ  137 (137)
Q Consensus       110 -~~~~~~~dL~~~AL~FRLLRQhGy~VS~  137 (137)
                       .......|||+|||+|||||||||+|||
T Consensus        78 ~~~~~~~~DL~~~AL~FRLLRqhGy~VS~  106 (207)
T d1n1ba1          78 HNNEVEKMDLYFTALGFRLLRQHGFNISQ  106 (207)
T ss_dssp             HHCCCCSCCHHHHHHHHHHHHHTTCCCCG
T ss_pred             cccccccccHHHHHHHHHHHHHcCCCCCH
Confidence             1111236999999999999999999996