Citrus Sinensis ID: 048380

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
SSVAEKLQLEASQKNRKLETQESRILSSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDPSKLCSSERNNQLYEFSSTYLDTIQTHLDSLLELLQVMETVTTPHPQDQPGKYFMAIL
Secondary Structure (PSIPRED)
ccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHccccccccccccEEEEcccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHccccccccccccccccHHHHHcccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEc
Coil and Loop (DISEMBL)
SSVAEKLQLEASQKNRkletqesrilssspslfitqldanvpvvnpttpgtspptvnpppsptitgpsppsptttgpsppsptttgpsppsptttgptitppapsttttpassggawcianpsasetGLQVALDYAcgfggadcsaiqpgascynpntihdhasyafndyyhknpaptscvfggaaqltytdpsklcssernnqlyefSSTYLDTIQTHLDSLLELLQVMEtvttphpqdqpgkyfmail
Flexible Loop (DISEMBL)
SSVAEKLQLEAsqknrkletqesrilssspslfiTQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDPSKLCSSERNNQLYEFSSTYLDTIQTHLDSLLELLQVMETVttphpqdqpGKYFMAIL
Low Complexity Region (SEG)
SSVAEKLQLEASQKNRKLETQESRILSSSPSLFITQLDAnvpvvnpttpgtspptvnpppsptitgpsppsptttgpsppsptttgpsppsptttgptitppapsttttpassggAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDPSKLCSSERNNQLYEFSSTYLDTIQTHLDSLLELLQVMETVTTPHPQDQPGKYFMAIL
Disordered region (IsUnstruct)
********************************FITQ*******************************************************************************AWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDPSKLCSSERNNQLYEFSSTYLDTIQTHLDSLLELLQVMETV*****************
Disordered Region (DISOPRED)
************************************LDANVPVVNPTTPGTSPPTVNPPPSPTITG**PPSPTTTGPSPPSPTTTGPSP**************************AWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDPSKLCSSERNNQLYEFSSTYLDTIQTHLDSLLELLQVMETVTTPHPQDQPGKYFMAIL
Disordered Region (DISEMBL)
*************************LSSSPSLFITQLDANVPVVNPTT**************************************************ITPP***********GGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDPSKLCSSERNNQLYEFSSTYLDTIQTHLDSLLELLQVMETVTTPHPQDQPGKYFMAIL
Disordered Region (DISPRO)
*****KL*******N*K*ETQESRILSSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDPSKLCSSERNNQLYEFSSTYLDTIQTHLDSLLELLQVMETVTTPHPQDQPGKYFMAIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SSVxxxxxxxxxxxxxxxxxxxxxILSSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDPSKLCSSERNNQLYEFSSTYLDTIQTHLDSLLELLQVMETVTTPHPQDQPGKYFMAIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
O65399	511	Glucan endo-1,3-beta-gluc	no	no	0.312	0.152	0.544	1e-17
Q9FJU9	506	Glucan endo-1,3-beta-gluc	no	no	0.312	0.154	0.506	1e-16
Q8VYE5	534	Glucan endo-1,3-beta-gluc	no	no	0.312	0.146	0.531	2e-16
Q9ZU91	501	Glucan endo-1,3-beta-gluc	no	no	0.444	0.221	0.413	2e-16
Q9M069	504	Glucan endo-1,3-beta-gluc	no	no	0.312	0.154	0.462	1e-14
Q9C7U5	505	Glucan endo-1,3-beta-gluc	no	no	0.312	0.154	0.481	2e-14
Q94CD8	505	Glucan endo-1,3-beta-gluc	no	no	0.312	0.154	0.493	2e-14
P52409	461	Glucan endo-1,3-beta-gluc	N/A	no	0.316	0.171	0.451	4e-14
Q9M2K6	180	Glucan endo-1,3-beta-gluc	no	no	0.316	0.438	0.437	2e-13
Q9FNQ2	201	Glucan endo-1,3-beta-gluc	no	no	0.324	0.402	0.445	7e-13

>sp|O65399|E131_ARATH Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKN-P 175
           +CIA        LQ ALD+ACG G ++CS IQPG SCY PN +  HAS+AFN YY K   
Sbjct: 381 YCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGR 440

Query: 176 APTSCVFGGAAQLTYTDPS 194
           A  SC F G A +T TDPS
Sbjct: 441 ASGSCDFKGVAMITTTDPS 459

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 3EC: 9

>sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPA 176
           WCIA+  ASE  L+ ALD+ACG G  DC+AIQP   C+ P+T+  HAS+ FN Y+ +N A
Sbjct: 369 WCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRA 428

Query: 177 -PTSCVFGGAAQLTYTDPS 194
              +C FGGA      DPS
Sbjct: 429 TDVACSFGGAGVKVNKDPS 447

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q8VYE5|E1312_ARATH Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPA 176
           WCIA+  AS T LQ ALD+ACG G  DCSA+QP   C+ P+T+  HASYAFN YY ++ A
Sbjct: 391 WCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGA 450

Query: 177 PT-SCVFGGAAQLTYTDPS 194
            +  C F GA+     DPS
Sbjct: 451 SSIDCSFNGASVEVDKDPS 469

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q9ZU91|E133_ARATH Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 60/121 (49%), Gaps = 10/121 (8%)

Query: 85  TGPSPPSPTTTGPTITPPAPSTTTTPASSGGA---------WCIANPSASETGLQVALDY 135
           T P P S    G   T   P  T   A +G           +CIA        LQ ALD+
Sbjct: 319 TRPGPVSEKNWGLFYTNGTPVYTLRLAGAGAILANDTTNQTFCIAKEKVDRKMLQAALDW 378

Query: 136 ACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHK-NPAPTSCVFGGAAQLTYTDPS 194
           ACG G  DCSA+  G SCY P+ +  H++YAFN YY K   A  SC F G A +T TDPS
Sbjct: 379 ACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPS 438

Query: 195 K 195
           +
Sbjct: 439 R 439

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q9M069|E137_ARATH Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 116 AWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNP 175
            WC+    A+   LQ +LD+ACG G  DC AIQPG +C+ PN +  HA+YA N Y+ K+P
Sbjct: 363 GWCVPKKGATNEELQASLDWACGHG-IDCGAIQPGGACFEPNNVVSHAAYAMNMYFQKSP 421

Query: 176 A-PTSCVFGGAAQLTYTDPS 194
             PT C F   A +T  +PS
Sbjct: 422 KQPTDCDFSKTATVTSQNPS 441

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHK-NP 175
           +C A   A    LQ ALD+ACG G  DCS I+ G +CY P+ +  HA+YAF+ YYH+   
Sbjct: 368 YCTAREGADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGN 427

Query: 176 APTSCVFGGAAQLTYTDPS 194
            P +C F G A +T TDPS
Sbjct: 428 NPDACNFNGVASITTTDPS 446

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q94CD8|E134_ARATH Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHK-NP 175
           +C+A   A +  L   L++ACG G A+C+AIQPG  CY PN +  HAS+AFNDYY K   
Sbjct: 362 FCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKS 421

Query: 176 APTSCVFGGAAQLTYTDPS 194
           A  +C F G A  T  DPS
Sbjct: 422 AGGTCDFDGTAITTTRDPS 440

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|P52409|E13B_WHEAT Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 114 GGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHK 173
           GG WC+A   A+ T LQ  ++YACGF   DC  IQ G +C++PN++  HASY  N YY  
Sbjct: 374 GGKWCVAKDGANGTDLQNNINYACGF--VDCKPIQSGGACFSPNSLQAHASYVMNAYYQA 431

Query: 174 NP-APTSCVFGGAAQLTYTDPS 194
           N     +C F G   +T +DPS
Sbjct: 432 NGHTDLACDFKGTGIVTSSDPS 453

Is thought to be an important plant defense-related product against fungal pathogens.

Triticum aestivum (taxid: 4565)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q9M2K6|E13L1_ARATH Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKN-P 175
           WC+A  +A ++ LQ A+++ACG GGADC  IQ G  C +P  +   AS+ FN+YY KN  
Sbjct: 41  WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGE 100

Query: 176 APTSCVFGGAAQLTYTDPSK 195
              +C F   A LT  +PS+
Sbjct: 101 EDEACNFNNNAALTSLNPSQ 120

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNQ2|E13L2_ARATH Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 113 SGGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYH 172
           S  +WC+     S+T LQ  LDYACG  GADC+  +P  SC+NP+ +  H +YA N ++ 
Sbjct: 17  SSASWCVCKTGLSDTVLQATLDYACG-NGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQ 75

Query: 173 KN-PAPTSCVFGGAAQLTYTDPS 194
           K   +P SC F G A  T +DPS
Sbjct: 76  KKGQSPGSCNFDGTATPTNSDPS 98

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
118484724	304	unknown [Populus trichocarpa]	0.768	0.631	0.561	5e-46
449459396	281	PREDICTED: uncharacterized protein LOC10	0.632	0.562	0.515	3e-39
255557427	282	hydrolase, hydrolyzing O-glycosyl compou	0.712	0.631	0.564	8e-39
449500627	461	PREDICTED: uncharacterized LOC101215382	0.62	0.336	0.497	1e-38
356528379	276	PREDICTED: glucan endo-1,3-beta-glucosid	0.648	0.586	0.598	7e-38
359483604	296	PREDICTED: glucan endo-1,3-beta-glucosid	0.692	0.584	0.602	2e-37
357459185	207	Glucan endo-1,3-beta-glucosidase [Medica	0.42	0.507	0.682	4e-35
297740635	195	unnamed protein product [Vitis vinifera]	0.332	0.425	0.807	2e-34
357494313	270	Glucan endo-1,3-beta-glucosidase-like pr	0.432	0.4	0.645	1e-33
224116696	80	predicted protein [Populus trichocarpa]	0.32	1.0	0.825	1e-32

>gi|118484724|gb|ABK94231.1| unknown [Populus trichocarpa]

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 114/203 (56%), Positives = 135/203 (66%), Gaps = 11/203 (5%)

Query: 2   SVAEKLQLEASQKNRKLETQESRILSSSPSLFITQLD---ANVPVVNPTTPGTSPPTVNP 58
           SVA    LE+ QK++ +  QE+R+L S  ++  TQLD     VPV+NPTTPGT+P  VNP
Sbjct: 25  SVAGTPTLESIQKHKIVGDQENRMLISH-AVSTTQLDTITGGVPVINPTTPGTTP-IVNP 82

Query: 59  ---PPSPTITGP---SPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPAS 112
              PP+ T   P   +PP+      SPP+P    P P +P     T   P P  +T P S
Sbjct: 83  VDSPPASTGISPIPTTPPAGINPVDSPPAPIGISPIPTTPPAGIMTPVTPNPPASTNPTS 142

Query: 113 SGGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYH 172
           SGG WCIA+  AS+T LQVA+DYACGFGGADCSAIQPG+ CYNPNT+ DHASYAFN YY 
Sbjct: 143 SGGQWCIASTIASQTALQVAIDYACGFGGADCSAIQPGSGCYNPNTLRDHASYAFNSYYQ 202

Query: 173 KNPAPTSCVFGGAAQLTYTDPSK 195
           KNP  TSCVFGG AQLT TDPS 
Sbjct: 203 KNPGSTSCVFGGTAQLTNTDPSN 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459396|ref|XP_004147432.1| PREDICTED: uncharacterized protein LOC101215382 [Cucumis sativus]

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/196 (51%), Positives = 117/196 (59%), Gaps = 38/196 (19%)

Query: 1   SSVAEKLQL-EASQKNRKLETQESRILSSSPSLFITQLDANVPVVNPTTPGTSPPTVNPP 59
           SS+AEK  + E +Q+N  L+ +E R + S PSL  TQLD +  +VNPTT G +P  V PP
Sbjct: 23  SSLAEKSPIQEENQENIPLQNEEDRTIVS-PSLHFTQLD-DTTIVNPTTSGGTP--VAPP 78

Query: 60  PSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGAWCI 119
            S                              P    P + P A S        GG+WCI
Sbjct: 79  QS-----------------------------VPNIVDPNVNPTAVSGN----PGGGSWCI 105

Query: 120 ANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTS 179
           AN +AS T LQVALDYACG+GGADCSAIQPG SCY+PNT+ DHASYAFNDYY KNPA TS
Sbjct: 106 ANSAASPTALQVALDYACGYGGADCSAIQPGGSCYDPNTVKDHASYAFNDYYQKNPAATS 165

Query: 180 CVFGGAAQLTYTDPSK 195
           CVFGG AQL  TDPS 
Sbjct: 166 CVFGGTAQLVSTDPSN 181

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557427|ref|XP_002519744.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gi|223541161|gb|EEF42717.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 129/195 (66%), Gaps = 17/195 (8%)

Query: 1   SSVAEKLQLEASQKNRKLETQESRILSSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPP 60
           S VAE L LEA Q +R  + QE++I  SSP +  TQLD    V   TTP  +P  ++ PP
Sbjct: 16  SIVAETLPLEAIQDDRIADNQENQIPFSSP-VSTTQLDTVPTVNPTTTPIVNP--IDSPP 72

Query: 61  SPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGAWCIA 120
           +P +   SPP+P               SPP+P     T     P +TTTP+SSGG WCIA
Sbjct: 73  AP-VAIDSPPAPVAID-----------SPPAPAAVTTTPP--MPPSTTTPSSSGGQWCIA 118

Query: 121 NPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTSC 180
           +P+ASET LQVALDYACG+GGADC+AIQ G SCYNPNT+ DHASYAFN YY KNP PTSC
Sbjct: 119 SPTASETALQVALDYACGYGGADCAAIQSGGSCYNPNTVRDHASYAFNSYYQKNPIPTSC 178

Query: 181 VFGGAAQLTYTDPSK 195
           VFGG AQLT TDPS 
Sbjct: 179 VFGGTAQLTSTDPSN 193

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500627|ref|XP_004161151.1| PREDICTED: uncharacterized LOC101215382 [Cucumis sativus]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/197 (49%), Positives = 118/197 (59%), Gaps = 42/197 (21%)

Query: 1   SSVAEK--LQLEASQKNRKLETQESRILSSSPSLFITQLDANVPVVNPTTPGTSPPTVNP 58
           SS+AEK  +Q E +Q+N  L+ +E R + S PSL  TQLD +  +VNPTT          
Sbjct: 203 SSLAEKSPIQ-EENQENIPLQNEEDRTIVS-PSLHFTQLD-DTTIVNPTT---------- 249

Query: 59  PPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPAS-SGGAW 117
                                     +G +P +P  + P I  P  + T    +  GG+W
Sbjct: 250 --------------------------SGGTPVAPPQSVPNIVDPNVNPTAVSGNPGGGSW 283

Query: 118 CIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAP 177
           CIAN +AS T LQVALDYACG+GGADCSAIQPG SCY+PNT+ DHASYAFNDYY KNPA 
Sbjct: 284 CIANSAASPTALQVALDYACGYGGADCSAIQPGGSCYDPNTVKDHASYAFNDYYQKNPAA 343

Query: 178 TSCVFGGAAQLTYTDPS 194
           TSCVFGG AQL  TDPS
Sbjct: 344 TSCVFGGTAQLVSTDPS 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528379|ref|XP_003532781.1| PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 2-like [Glycine max]

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 106/177 (59%), Positives = 120/177 (67%), Gaps = 15/177 (8%)

Query: 18  LETQESRILSSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGP 77
           +  ++  I SSS     TQLD +VP+VNPTTP T  P +    +P I    P +P T+GP
Sbjct: 28  INGKKQEIFSSSE--LGTQLD-DVPIVNPTTPDTGNPYMG---NPNI----PQTPDTSGP 77

Query: 78  SPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGAWCIANPSASETGLQVALDYAC 137
           +P +PTT        T T    TP    TT T  SSGG WC+AN  AS+T LQVALDYAC
Sbjct: 78  NPTTPTTN-----PTTPTTTPTTPTTTPTTPTTTSSGGQWCVANQGASDTALQVALDYAC 132

Query: 138 GFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDPS 194
           GFGGADCSAIQPGASCYNPNT+ DHASYAFNDYY KNPAPTSCVFGG A LT  DPS
Sbjct: 133 GFGGADCSAIQPGASCYNPNTVRDHASYAFNDYYQKNPAPTSCVFGGTASLTSNDPS 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483604|ref|XP_002271903.2| PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Vitis vinifera]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/181 (60%), Positives = 129/181 (71%), Gaps = 8/181 (4%)

Query: 17  KLETQESRILSSSPSLFITQLDANVPVVNPTTPGTSPPTVNP---PPSPTITGPSPPSPT 73
           K   QE+RIL S  S F +QLD+ +P++NP+TP T+ P VNP   PP+P  T P+    T
Sbjct: 38  KQINQENRILFSF-SDFTSQLDS-IPIINPSTPTTTTPIVNPYTTPPAPVYTDPNTTPTT 95

Query: 74  TTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGAWCIANPSASETGLQVAL 133
            T       TT   +P +PT    T T     TTTTPA+S G+WCIA+P+ASET LQVA+
Sbjct: 96  PTTTPTMPTTTPTATPTTPTMPTTTPTT---PTTTTPAASTGSWCIASPAASETALQVAI 152

Query: 134 DYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDP 193
           DYACG+GGADCSAIQ   SCYNPNT+ DHASYAFNDYY KNPAPTSCVFGG AQL+YTDP
Sbjct: 153 DYACGYGGADCSAIQSSGSCYNPNTLRDHASYAFNDYYQKNPAPTSCVFGGTAQLSYTDP 212

Query: 194 S 194
           S
Sbjct: 213 S 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459185|ref|XP_003599873.1| Glucan endo-1,3-beta-glucosidase [Medicago truncatula] gi|355488921|gb|AES70124.1| Glucan endo-1,3-beta-glucosidase [Medicago truncatula]

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 85/107 (79%), Gaps = 2/107 (1%)

Query: 91  SPTTTGPTITPP--APSTTTTPASSGGAWCIANPSASETGLQVALDYACGFGGADCSAIQ 148
           +P T  P+ T P  APST+ +P SSG +WCIA+PSAS+  LQVALDYACG+GG DCSAIQ
Sbjct: 84  NPDTYSPSSTVPITAPSTSNSPVSSGASWCIASPSASQRSLQVALDYACGYGGTDCSAIQ 143

Query: 149 PGASCYNPNTIHDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDPSK 195
           PG SCYNPN++HDHAS+AFN YY KNP P SC FGG A LT T+PSK
Sbjct: 144 PGGSCYNPNSVHDHASFAFNKYYQKNPVPNSCNFGGNAVLTNTNPSK 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740635|emb|CBI30817.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/83 (80%), Positives = 74/83 (89%)

Query: 113 SGGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYH 172
           S G+WCIA+P+ASET LQVA+DYACG+GGADCSAIQ   SCYNPNT+ DHASYAFNDYY 
Sbjct: 31  STGSWCIASPAASETALQVAIDYACGYGGADCSAIQSSGSCYNPNTLRDHASYAFNDYYQ 90

Query: 173 KNPAPTSCVFGGAAQLTYTDPSK 195
           KNPAPTSCVFGG AQL+YTDPS 
Sbjct: 91  KNPAPTSCVFGGTAQLSYTDPSS 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494313|ref|XP_003617445.1| Glucan endo-1,3-beta-glucosidase-like protein [Medicago truncatula] gi|355518780|gb|AET00404.1| Glucan endo-1,3-beta-glucosidase-like protein [Medicago truncatula]

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 83/110 (75%), Gaps = 2/110 (1%)

Query: 85  TGPSPPSPTTTGPTITPPAPSTTTTPASSGGAWCIANPSASETGLQVALDYACGFGGADC 144
           + P   SPT+T P   P   +  + P SSG +WC+A+PSAS+ GLQVALDYACG+GG DC
Sbjct: 78  SNPDTVSPTSTLPYTNPT--TVNSFPISSGSSWCVASPSASQIGLQVALDYACGYGGTDC 135

Query: 145 SAIQPGASCYNPNTIHDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDPS 194
           SAIQPG SCYNPN+IHD ASYAFN YYHKNP P SC FGG A +T T+PS
Sbjct: 136 SAIQPGGSCYNPNSIHDLASYAFNKYYHKNPVPNSCNFGGTAVITSTNPS 185

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116696|ref|XP_002331855.1| predicted protein [Populus trichocarpa] gi|222875373|gb|EEF12504.1| predicted protein [Populus trichocarpa]

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/80 (82%), Positives = 71/80 (88%)

Query: 115 GAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKN 174
           GAWCIA+P+ASET LQVA+DYACG+GG DCSA+QPG SCYNPNTI DHASYAFN YY KN
Sbjct: 1   GAWCIASPTASETALQVAIDYACGYGGTDCSALQPGGSCYNPNTIRDHASYAFNSYYQKN 60

Query: 175 PAPTSCVFGGAAQLTYTDPS 194
           P PTSCVFGG AQLT TDPS
Sbjct: 61  PVPTSCVFGGTAQLTTTDPS 80

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2013728	315	AT1G29380 "AT1G29380" [Arabido	0.316	0.250	0.734	3.4e-29
TAIR|locus:1009023225	227	AT2G30933 "AT2G30933" [Arabido	0.316	0.348	0.582	1.1e-23
TAIR|locus:2012355	330	AT1G09460 "AT1G09460" [Arabido	0.308	0.233	0.594	2.3e-23
TAIR|locus:2161710	465	AT5G55180 [Arabidopsis thalian	0.352	0.189	0.528	2.5e-21
TAIR|locus:2056519	472	AT2G05790 [Arabidopsis thalian	0.308	0.163	0.589	2.6e-20
TAIR|locus:2116327	455	AT4G26830 [Arabidopsis thalian	0.312	0.171	0.55	4.9e-20
TAIR|locus:2177256	119	AT5G35740 "AT5G35740" [Arabido	0.34	0.714	0.533	8.3e-19
TAIR|locus:2158571	380	AT5G67460 [Arabidopsis thalian	0.312	0.205	0.518	5.2e-18
TAIR|locus:2140882	231	AT4G13600 [Arabidopsis thalian	0.308	0.333	0.506	9.5e-18
TAIR|locus:2115919	143	AT4G05430 "AT4G05430" [Arabido	0.312	0.545	0.506	1.2e-17

TAIR|locus:2013728 AT1G29380 "AT1G29380" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 58/79 (73%), Positives = 63/79 (79%)

Query:   117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPA 176
             WCIA  +AS T LQVALDYACG+GGADC  IQ GA+CY PNTI DHAS+AFN YY K+P 
Sbjct:   148 WCIAKANASPTSLQVALDYACGYGGADCGQIQQGAACYEPNTIRDHASFAFNSYYQKHPG 207

Query:   177 PTSCVFGGAAQLTYTDPSK 195
               SC FGGAAQLT TDPSK
Sbjct:   208 SDSCNFGGAAQLTSTDPSK 226

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023225 AT2G30933 "AT2G30933" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 46/79 (58%), Positives = 56/79 (70%)

Query:   116 AWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNP 175
             +WC+A  + ++  LQ ALDYACG GGADCS IQ G +CYNPN++  HAS+AFN YY KNP
Sbjct:    81 SWCVARENVAKMALQAALDYACGIGGADCSEIQEGGNCYNPNSLRAHASFAFNSYYQKNP 140

Query:   176 APTSCVFGGAAQLTYTDPS 194
              P+SC F G A     DPS
Sbjct:   141 IPSSCNFDGTAITISADPS 159

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012355 AT1G09460 "AT1G09460" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 47/79 (59%), Positives = 58/79 (73%)

Query:   116 AWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNP 175
             +WC+A P AS+  LQ ALDYACG   ADCS +Q G +CY+P ++  HAS+AFN YY KNP
Sbjct:   136 SWCVAKPGASQVSLQQALDYACGI--ADCSQLQQGGNCYSPISLQSHASFAFNSYYQKNP 193

Query:   176 APTSCVFGGAAQLTYTDPS 194
             +P SC FGGAA L  T+PS
Sbjct:   194 SPQSCDFGGAASLVNTNPS 212

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2161710 AT5G55180 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 47/89 (52%), Positives = 58/89 (65%)

Query:   117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPA 176
             WC+AN   ++  LQ  LDYACG GGADC  IQPGA+CYNP ++  HASYAFN YY KN  
Sbjct:   372 WCVANGKTTKEKLQEGLDYACGEGGADCRPIQPGATCYNPESLEAHASYAFNSYYQKNAR 431

Query:   177 PT-SCVFGGAAQLTYTDPSKLCSSERNNQ 204
                +C FGGAA +    PSK+     +N+
Sbjct:   432 GVGTCNFGGAAYVVSQPPSKVWEMRVSNR 460

GO:0003824 "catalytic activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

TAIR|locus:2056519 AT2G05790 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 46/78 (58%), Positives = 53/78 (67%)

Query:   117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNP- 175
             WC+AN  A E  LQ  LDYACG GGADC  IQPGA+CY+P+T+  HAS+AFN YY K   
Sbjct:   384 WCVANGDAGEERLQGGLDYACGEGGADCRPIQPGANCYSPDTLEAHASFAFNSYYQKKGR 443

Query:   176 APTSCVFGGAAQLTYTDP 193
             A  SC FGGAA +    P
Sbjct:   444 AGGSCYFGGAAYVVSQPP 461

GO:0003824 "catalytic activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0040007 "growth" evidence=RCA

TAIR|locus:2116327 AT4G26830 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 4.9e-20, P = 4.9e-20
 Identities = 44/80 (55%), Positives = 55/80 (68%)

Query:   117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPA 176
             WC++N   ++  LQ ALDYACG GGADC  IQPGA+CY+P ++  HASYAFN YY KN  
Sbjct:   367 WCVSNGEVAKEKLQEALDYACGEGGADCRPIQPGATCYHPESLEAHASYAFNSYYQKNSR 426

Query:   177 PT-SCVFGGAAQLTYTDPSK 195
                +C FGGAA +  T P +
Sbjct:   427 RVGTCFFGGAAHVV-TQPPR 445

GO:0003824 "catalytic activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

TAIR|locus:2177256 AT5G35740 "AT5G35740" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 48/90 (53%), Positives = 56/90 (62%)

Query:   117 WCIANPSASETGLQVALDYACGFGGADCSAIQP-GASCYNPNTIHDHASYAFNDYY--HK 173
             WCIA+    +  LQ ALD+ACG GGADCS +Q     C+ PNTI DHAS+AFN YY  +K
Sbjct:    30 WCIADEQTPDDELQAALDWACGKGGADCSKMQQENQPCFLPNTIRDHASFAFNSYYQTYK 89

Query:   174 NPAPTSCVFGGAAQLTYTDPSK-LCSSERN 202
             N    SC F GAA +T  DPS   C  E N
Sbjct:    90 NKGG-SCYFKGAAMITELDPSHGSCQYEYN 118

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2158571 AT5G67460 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 5.2e-18, P = 5.2e-18
 Identities = 41/79 (51%), Positives = 51/79 (64%)

Query:   117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPA 176
             WC+A PS +   LQ +LD+ACG GGA+C  I+P   CY P+T+  HASYAFN Y+ K   
Sbjct:   293 WCVAKPSVAAETLQQSLDFACGQGGANCDEIKPHGICYYPDTVMAHASYAFNSYWQKTKR 352

Query:   177 PT-SCVFGGAAQLTYTDPS 194
                +C FGG A L  TDPS
Sbjct:   353 NGGTCSFGGTAMLITTDPS 371

GO:0003824 "catalytic activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

TAIR|locus:2140882 AT4G13600 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 40/79 (50%), Positives = 49/79 (62%)

Query:   117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNP- 175
             WC+A    +   LQ ALDYAC   GADC+ IQP   C+ PNT+  HASYAFN Y+ +   
Sbjct:    61 WCVARFDVTSQALQAALDYACA-AGADCAPIQPNGLCFLPNTVQAHASYAFNSYFQRAAM 119

Query:   176 APTSCVFGGAAQLTYTDPS 194
             AP SC F G + +  TDPS
Sbjct:   120 APGSCNFAGTSTIAKTDPS 138

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2115919 AT4G05430 "AT4G05430" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 40/79 (50%), Positives = 49/79 (62%)

Query:   117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNPA 176
             WC+A P A++  LQ ALD+ACG G  DCS I+    CY P+TI  HAS+AFN YY  N  
Sbjct:    23 WCVARPGATQAELQRALDWACGIGRVDCSVIERHGDCYEPDTIVSHASFAFNAYYQTNGN 82

Query:   177 PT-SCVFGGAAQLTYTDPS 194
                +C FGG A  T  +PS
Sbjct:    83 NRIACYFGGTATFTKINPS 101

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003393001 SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (132 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
smart00768	85	smart00768, X8, Possibly involved in carbohydrate	2e-36
pfam07983	77	pfam07983, X8, X8 domain	6e-24
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-07
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	4e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-04
PRK11907	814	PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl	2e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-04
TIGR04216	782	TIGR04216, halo_surf_glyco, major cell surface gly	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	4e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	6e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	6e-04
COG3889	872	COG3889, COG3889, Predicted solute binding protein	6e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
pfam01034	207	pfam01034, Syndecan, Syndecan domain	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
COG3889	872	COG3889, COG3889, Predicted solute binding protein	0.003
COG3889	872	COG3889, COG3889, Predicted solute binding protein	0.003
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.003
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	0.004
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.004

>gnl|CDD|197867 smart00768, X8, Possibly involved in carbohydrate binding

 Score =  123 bits (312), Expect = 2e-36
 Identities = 49/79 (62%), Positives = 56/79 (70%), Gaps = 2/79 (2%)

Query: 117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNP- 175
           WC+A P A E  LQ ALDYACG G ADC+AIQPG SCY+PNT+  HASYAFN YY K   
Sbjct: 2   WCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQ 60

Query: 176 APTSCVFGGAAQLTYTDPS 194
           +  +C F G A +T TDPS
Sbjct: 61  SSGACDFSGTATITTTDPS 79

The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. Length = 85

>gnl|CDD|219681 pfam07983, X8, X8 domain

 Score = 91.2 bits (227), Expect = 6e-24
 Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 7/76 (9%)

Query: 117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGASC-----YNPNTIHDHASYAFNDYY 171
           WC+A PS  +  LQ   DYACG  GADC+ IQ   +      Y+  +   H SYAFN YY
Sbjct: 2   WCVAKPSVDDKDLQDLFDYACGQ-GADCTGIQANGTTGKYGAYSMCSPKQHLSYAFNSYY 60

Query: 172 HK-NPAPTSCVFGGAA 186
            K   A ++C F G+A
Sbjct: 61  QKQGKASSACDFSGSA 76

The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. Length = 77

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 2/84 (2%)

Query: 42  PVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITP 101
           P   P+T   +    N PP   +   + P P    P P +P        +P  T   I  
Sbjct: 381 PTPAPSTRPKAAAAANIPPKEPVRETATPPPVP--PRPVAPPVPHTPESAPKLTRAAIPV 438

Query: 102 PAPSTTTTPASSGGAWCIANPSAS 125
                 T PA              
Sbjct: 439 DEKPKYTPPAPPKEEEKALIADGD 462

Length = 585

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 11/128 (8%)

Query: 5   EKLQLEASQKNRKLETQE----SRILSSSPSLFITQLD-ANVPVVNPTTPGTSPPTVNPP 59
           EK++ E  +    +  Q+     +ILS   ++   ++   +  VV  + P T    V PP
Sbjct: 28  EKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVKEYKIKEKDFVVVMVSKPKTGTGKVAPP 87

Query: 60  PSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGAWCI 119
                   +P S  T  PSPP+   +G S    +           +T T P S   +   
Sbjct: 88  A------ATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPS 141

Query: 120 ANPSASET 127
           +   A+ T
Sbjct: 142 SGSDAAST 149

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 23/84 (27%), Positives = 26/84 (30%), Gaps = 7/84 (8%)

Query: 30  PSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSP 89
           PS FI+++       NPT      P   P                T PSPP       SP
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPS----APKTKQAATTPSPPPA---KASP 413

Query: 90  PSPTTTGPTITPPAPSTTTTPASS 113
           P P    PT   P P      A  
Sbjct: 414 PIPVPAEPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 1/85 (1%)

Query: 32  LFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPS 91
            F      +           +     P  +P    P+ P+P     + P+     P+  +
Sbjct: 32  FFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK-PAAAA 90

Query: 92  PTTTGPTITPPAPSTTTTPASSGGA 116
                P   P A +     A++   
Sbjct: 91  AAAAAPAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 16/75 (21%), Positives = 22/75 (29%)

Query: 39  ANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPT 98
             VP   P  P  + P+   P     T P   +     P  P   T  P P  P    P 
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420

Query: 99  ITPPAPSTTTTPASS 113
           +     S      ++
Sbjct: 421 VPHTPESAPKLTRAA 435

Length = 585

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 19/103 (18%), Positives = 26/103 (25%), Gaps = 5/103 (4%)

Query: 37  LDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTG 96
           ++A +  V    P         P  PT    + P        PP       + P P    
Sbjct: 356 IEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPR 415

Query: 97  PTITP-----PAPSTTTTPASSGGAWCIANPSASETGLQVALD 134
           P   P      +    T  A          P A     + AL 
Sbjct: 416 PVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALI 458

Length = 585

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 25/73 (34%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 45  NPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSP----PSPTTTGPSPPSPTTTGPTIT 100
              T  T PP    PP P  T P  P PT T P P    P PT T  S  +P       +
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPT-PPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 101 PPAPSTTTTPASS 113
           PP P       S 
Sbjct: 576 PPPPIPEEPTPSP 588

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 3/95 (3%)

Query: 13  QKNRKLETQESRILSSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSP 72
            ++ KL  +     +S+ +   T          P      P      P PT   P P + 
Sbjct: 503 GRSIKLNLESQSGSASNTA--KTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTAT 560

Query: 73  TTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTT 107
             +  +P         PP      PT +P   S+ 
Sbjct: 561 QASSNAPAQIPADSSPPPPIPEE-PTPSPTKDSSP 594

Length = 620

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 3/106 (2%)

Query: 11  ASQKNRKLETQESRILSSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPP 70
           +++ ++          S++         A    V+ T   +  P V   P+P +      
Sbjct: 151 SAELSQNSGQSVPLDTSTTTDP--ATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNA 208

Query: 71  SPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGA 116
               +  +  +  T  P+ P+       + P   +  +TPA+   A
Sbjct: 209 VVAPSQANVDTAATPAPAAPATPDGAAPL-PTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 25  ILSSSPSLFITQLDANVPVVN-PTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPT 83
           +L++S        +         T    + P  +          +P + TT   +P S  
Sbjct: 17  LLTASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSE 76

Query: 84  TTGPSPPSPTTTGPTI----TPPAPSTTTTPASSG 114
           T   S P+   T  T     T    +T T+    G
Sbjct: 77  TAETSDPTSEATDTTTSEARTVTPAATETSKPVEG 111

Length = 814

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 14/79 (17%), Positives = 21/79 (26%), Gaps = 8/79 (10%)

Query: 42  PVVNPTTPGTSPPT-VNPPPSPTITGPSPPSPTTTGPSPPSPTT-------TGPSPPSPT 93
           PV         P       PSP+ +  +         + P+ T            P +P 
Sbjct: 381 PVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPP 440

Query: 94  TTGPTITPPAPSTTTTPAS 112
           +T P    PA         
Sbjct: 441 STAPQAVRPAQFKEEKKIP 459

Length = 614

>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 56  VNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGG 115
           V     P  T    P+ TTT      PTTTGP   + T    T T      TTT +S+ G
Sbjct: 708 VEETERPDTTTSEDPTTTTT------PTTTGPEETTETAEPTTTTEEPTEETTTGSSTPG 761

Members of this family are the S-layer-forming halobacterial major cell surface glycoprotein. The highest scores below model cutoffs are fragmentary paralogs to actual members of the family. Modifications include at N-linked and O-linked glycosylation, a C-terminal diphytanylglyceryl modification, and probable cleavage of the PGF-CTERM tail. Length = 782

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 6/116 (5%)

Query: 20   TQESRILSSSPSLFITQLDANVPVVNPTTPGT--SPPTVNPPPSPTITGPSPPSPTTTGP 77
            T E    +   +  +    A     +P  P     P     P +P         PTT GP
Sbjct: 2707 TPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP 2766

Query: 78   SPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGAWCIANPSASETGLQVAL 133
              P+P     + P    T P +   + S  + P+     W  A+P A+      AL
Sbjct: 2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS----PWDPADPPAAVLAPAAAL 2818

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 22/70 (31%), Positives = 27/70 (38%)

Query: 42   PVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITP 101
            P V+ +T   + P   P   P    P PP P    P PP P    P PP P       T 
Sbjct: 2889 PAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD 2948

Query: 102  PAPSTTTTPA 111
            PA +   + A
Sbjct: 2949 PAGAGEPSGA 2958

Length = 3151

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 23/116 (19%), Positives = 33/116 (28%), Gaps = 16/116 (13%)

Query: 18  LETQESRILSSSPSL-----FITQLDANVPVVNPTTPGTSPP---------TVNPPPSPT 63
           L+ Q  R    S +L      +  L A     +      +PP          +N      
Sbjct: 315 LDEQMERFARRSDALSLELALLHALLALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEV 374

Query: 64  ITGPSPPS--PTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGAW 117
            +  S P+   T  G   P        PP+P        PP  +    PA     W
Sbjct: 375 RSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAGLALRW 430

Length = 504

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 42  PVVNPTTPGTSPPTVNP--PPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTI 99
                +   + PP+ +P  P  P+          ++ P  PS   +   PPSP +     
Sbjct: 176 DADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPS 235

Query: 100 TPPAPSTTTTPASSG 114
            PP P+    P    
Sbjct: 236 PPPGPAAPPPPPVQQ 250

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 35  TQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTT 94
                  P   PT+  T  PT +PP SP     + P+      SP   + T  +P SP+T
Sbjct: 80  GTGKVAPPAATPTSAPT--PTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPST 137

Query: 95  TGPTITPPAPSTTTTPAS 112
           + P+    A ST    + 
Sbjct: 138 SVPSSGSDAASTLVVGSE 155

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 36  QLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTT 95
              +     +  +  + PP   P    + T P  P   T    PP P    P P      
Sbjct: 196 SFPSPPEDPSSPSDSSLPPA--PSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPP 253

Query: 96  GPTITPPAPSTTTTPASSGG 115
             T  P  PS + TPA  GG
Sbjct: 254 LSTAKPTPPSASATPAPIGG 273

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 19/100 (19%), Positives = 27/100 (27%), Gaps = 8/100 (8%)

Query: 19  ETQESRILSSSPSLFITQLDANVPVVNPTTP-GTSPPTVNPPPSPTITGPSPPSPTTTGP 77
               + I +S                  T    +     N       T       T T  
Sbjct: 760 SGTGTSITTSGTFTAEVPQSPT-----KTETTLSYSAYSNTSILIETTSVVITK-TVTQT 813

Query: 78  SPPSPTTTGPSPPSPT-TTGPTITPPAPSTTTTPASSGGA 116
              + + +     SPT T+  T T  +PS TTT     G 
Sbjct: 814 QTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTGGGICGP 853

Length = 872

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 33  FITQLDANVPVVNPTTPGTSPP----TVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPS 88
             +Q  +         P    P       P P PT T   PP+P    P+    ++  P+
Sbjct: 510 LESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTAT-APPPTPPPPPPTATQASSNAPA 568

Query: 89  PPSPTTTGPTITPPAPSTTTTPASS 113
                ++ P   P  P+ + T  SS
Sbjct: 569 QIPADSSPPPPIPEEPTPSPTKDSS 593

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 16/66 (24%), Positives = 23/66 (34%)

Query: 47   TTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPST 106
            T P  +  + +    P+   P+ P      P+   P    P+ P P  T    T P P  
Sbjct: 2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843

Query: 107  TTTPAS 112
               P S
Sbjct: 2844 GPPPPS 2849

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 1/71 (1%)

Query: 46  PTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPS 105
                         PSP     +P +     P+     T  P+P  P    P   P AP+
Sbjct: 440 APPSPAGNAPAGGAPSP-PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA 498

Query: 106 TTTTPASSGGA 116
               PA +  A
Sbjct: 499 APAAPAGADDA 509

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 45  NPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAP 104
           +PT PG S P    PP PT    SPP       S        P PP   +       PA 
Sbjct: 105 SPTPPGPSSP---DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAA 161

Query: 105 STTTTPASSGGAWCIANPSASETGL 129
             +   +S   A  +++P  +    
Sbjct: 162 VASDAASSRQAALPLSSPEETARAP 186

Length = 1352

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 16/89 (17%), Positives = 24/89 (26%), Gaps = 1/89 (1%)

Query: 38  DANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTT-GPSPPSPTTTGPSPPSPTTTG 96
            A        +   + P    P +P    P+  +P     P+  +     P+ P      
Sbjct: 46  AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAA 105

Query: 97  PTITPPAPSTTTTPASSGGAWCIANPSAS 125
                 A     TP     A    N  AS
Sbjct: 106 AAPAAAAVEDEVTPLRGAAAAVAKNMDAS 134

Length = 1228

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 9/85 (10%), Positives = 17/85 (20%)

Query: 45  NPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAP 104
                  +P             P+  +       P       PS  +  T          
Sbjct: 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPA 229

Query: 105 STTTTPASSGGAWCIANPSASETGL 129
           +             ++ P+A    L
Sbjct: 230 TPDGAAPLPTDQAGVSTPAADPNAL 254

Length = 331

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 2/73 (2%)

Query: 46   PTTPGTSPPTVNPPPS--PTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPA 103
            P  P   P  V  P +  P    P+ P P  T   P +P      PP     G ++ P  
Sbjct: 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG 2860

Query: 104  PSTTTTPASSGGA 116
                  P+ S  A
Sbjct: 2861 DVRRRPPSRSPAA 2873

Length = 3151

>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 52  SPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPP--SPTTTGPTITPPAPSTTTT 109
           + P+ +    P  T  +PP  TTT  SP + TTT  +    SPT +    T  +PS T T
Sbjct: 60  ATPSDDEDSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDT 119

Query: 110 PA 111
             
Sbjct: 120 EE 121

Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors. Length = 207

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 6/103 (5%)

Query: 53   PPTVNPPPSPTITG---PSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTT 109
            PP   P P+P       P PP P     + P+       P  P       TP  P+    
Sbjct: 2703 PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG---PATPGGPARPAR 2759

Query: 110  PASSGGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGAS 152
            P ++ G    A P+A   G    L        ++     P   
Sbjct: 2760 PPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW 2802

Length = 3151

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 40  NVPVVNPTTPGTSPPTVNPPPSPTITGPSP-PSPTTTGPSPPSPTTTGPSPPSPTTTGPT 98
           N  ++  TT      TV    + T    SP P+ TT+     + TTT  SP S TTTG  
Sbjct: 794 NTSILIETTSVVITKTVTQTQTTT---SSPSPTQTTSPTQTSTSTTTTTSP-SQTTTGGG 849

Query: 99  ITPPA 103
           I  P 
Sbjct: 850 ICGPI 854

Length = 872

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 33  FITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSP 92
            +  +D         T  +   T   P SPT T  +  S +    +     TT       
Sbjct: 752 KVRIMDPASGTGTSITT-SGTFTAEVPQSPTKTETTL-SYSAYSNTSILIETTSVVITKT 809

Query: 93  TTTGPTITP-PAPSTTTTPAS 112
            T   T T  P+P+ TT+P  
Sbjct: 810 VTQTQTTTSSPSPTQTTSPTQ 830

Length = 872

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 58  PPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASS 113
           PPP+P +    PP P    P+ P      PS P+ +   P  TP +P     P SS
Sbjct: 145 PPPAPVVMMQ-PPPPHAMPPASPPAAQPAPSAPASS---PPPTPASPPPAKAPKSS 196

Length = 274

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 13/81 (16%)

Query: 39  ANVPVVNPTTPGTSPPTVNPPPS--PTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTG 96
           A  P        T      PPP+  P +   +P  P    P+P        +PP+ +   
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARS--- 437

Query: 97  PTITPPAPSTTTTPASSGGAW 117
                   +     AS+G  W
Sbjct: 438 --------ADPAAAASAGDRW 450

Length = 576

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 12/94 (12%)

Query: 32  LFITQLDANVPVVNPTTPGTSP-----PTVNPPPSPTITGPSPPSPTT----TGPSPPSP 82
           L + +L  N   V P+  G+       P  + P      GP+ P          PSP S 
Sbjct: 368 LRLIELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASA 427

Query: 83  TTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGA 116
            T    PP          PP+P  +     + G 
Sbjct: 428 PTPEQQPPVAR---SAPLPPSPQASAPRNVASGK 458

Length = 620

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 14/96 (14%)

Query: 44  VNPTTPGTSPPTVNPPPSP-----TITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPT 98
           V     G++  +V   PS       IT  +P    T   +  S  +   S  S +T    
Sbjct: 456 VMEPPYGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKSS-LSQEASLISKSTGNTH 514

Query: 99  ITPPAPSTTTTPASSGGAWC--------IANPSASE 126
                   TT P     +           AN +AS 
Sbjct: 515 KHSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASS 550

Length = 619

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 1/105 (0%)

Query: 48  TPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTT 107
                P     P        +           P+  +   +P +     P   PP P+  
Sbjct: 481 ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAA 540

Query: 108 TTPASSGGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGAS 152
              A +GGA   A       G++V+ D       A   A  P A+
Sbjct: 541 APAARAGGA-AAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAA 584

Length = 830

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
smart00768	85	X8 Possibly involved in carbohydrate binding. The	99.97
PF07983	78	X8: X8 domain; InterPro: IPR012946 The X8 domain [	99.91

>smart00768 X8 Possibly involved in carbohydrate binding

Probab=99.97  E-value=2.4e-31  Score=204.39  Aligned_cols=84  Identities=60%  Similarity=1.138  Sum_probs=80.6

Q ss_pred             cceeeCCCCChHHHHHHHHhhhcCCCCCccccCCCCCcCCCCChhhhhhhHHHHHHhhCC-CCCCCCCCcceEEEecCCC
Q 048380          116 AWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNP-APTSCVFGGAAQLTYTDPS  194 (250)
Q Consensus       116 lWCVAkp~as~s~Lq~aLDYACGqggaDCsaIq~GGsCY~PnTl~~hASYAFNsYYQ~~~-~~~ACDFsGsAtITt~DPS  194 (250)
                      +|||+|+++++++||++||||||++ +||++|++||.||+|+++++|||||||+|||+++ ..++|||+|.|++++.|||
T Consensus         1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps   79 (85)
T smart00768        1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS   79 (85)
T ss_pred             CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence            5999999999999999999999986 9999999999999999999999999999999985 7899999999999999999


Q ss_pred             CccCCCCCCeEE
Q 048380          195 KLCSSERNNQLY  206 (250)
Q Consensus       195 ~sC~~~~g~C~f  206 (250)
                      .      ++|+|
T Consensus        80 ~------~~C~~   85 (85)
T smart00768       80 T------GSCKF   85 (85)
T ss_pred             C------CccCC
Confidence            9      88876

The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.

>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges

Probab=99.91  E-value=8.3e-25  Score=166.53  Aligned_cols=72  Identities=49%  Similarity=0.973  Sum_probs=59.4

Q ss_pred             cceeeCCCCChHHHHHHHHhhhcCCCCCccccCCCCC-----cCCCCChhhhhhhHHHHHHhhCC-CCCCCCCCcceE
Q 048380          116 AWCIANPSASETGLQVALDYACGFGGADCSAIQPGAS-----CYNPNTIHDHASYAFNDYYHKNP-APTSCVFGGAAQ  187 (250)
Q Consensus       116 lWCVAkp~as~s~Lq~aLDYACGqggaDCsaIq~GGs-----CY~PnTl~~hASYAFNsYYQ~~~-~~~ACDFsGsAt  187 (250)
                      +|||+++++++++|+++|||||+++++||++|++||.     .|++|..++|||||||+|||+++ ...+|||+|+|+
T Consensus         1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at   78 (78)
T PF07983_consen    1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT   78 (78)
T ss_dssp             -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred             CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence            6999999999999999999999998899999999998     45555779999999999999985 789999999996

The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	250
2jon_A	101	Solution Structure Of The C-Terminal Domain Ole E 9		7e-11

>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 Length = 101

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 116 AWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYY-HKN 174
           +WC+  P  S+  L   ++YAC  G  DC  IQPG +C+ PNT+  HA+Y  N YY H  
Sbjct: 12  SWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70
Query: 175 PAPTSCVFGGAAQLTYTDPS 194
               +C F   A LT T+PS
Sbjct: 71  RNSWNCDFSQTATLTNTNPS 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
2jon_A	101	Beta-1,3-glucanase; olive pollen, allergen; NMR {O	2e-31
2w61_A	555	GAS2P, glycolipid-anchored surface protein 2; glyc	3e-16
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	9e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-06
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	4e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	7e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	7e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-04

>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea} Length = 101

 Score =  111 bits (278), Expect = 2e-31
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 105 STTTTPASSGGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHAS 164
           +T T    + G+WC+  P  S+  L   ++YAC   G DC  IQPG +C+ PNT+  HA+
Sbjct: 1   ATPTPTPKAAGSWCVPKPGVSDDQLTGNINYACS-QGIDCGPIQPGGACFEPNTVKAHAA 59

Query: 165 YAFNDYYHKNP-APTSCVFGGAAQLTYTDPS 194
           Y  N YY        +C F   A LT T+PS
Sbjct: 60  YVMNLYYQHAGRNSWNCDFSQTATLTNTNPS 90

>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* Length = 555

 Score = 76.5 bits (187), Expect = 3e-16
 Identities = 17/150 (11%), Positives = 28/150 (18%), Gaps = 11/150 (7%)

Query: 57  NPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGA 116
              P          +   T                     P     +             
Sbjct: 342 KADPKGITEEEYLTAKEPTEVESVECPHIAVGVWEANEKLPETPDRSKCACLDEILP--- 398

Query: 117 WCIANPSASETGLQVALDYACGFGGADCSAIQPGAS-----CYNPNTIHDHASYAFNDYY 171
             I    A     +    Y C     DCS I           ++  ++    S   +  Y
Sbjct: 399 CEIVPFGAESGKYEEYFSYLCSK--VDCSDILANGKTGEYGEFSDCSVEQKLSLQLSKLY 456

Query: 172 HKN-PAPTSCVFGGAAQLTYTDPSKLCSSE 200
            K       C           +  +  +SE
Sbjct: 457 CKIGANDRHCPLNDKNVYFNLESLQPLTSE 486

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 24/119 (20%), Positives = 35/119 (29%), Gaps = 5/119 (4%)

Query: 45  NPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAP 104
           +P  P TSP T     +       P +P    P       TG   P         TPP P
Sbjct: 1   DPAAP-TSPGTPGVAAATQAANGGPATPA---PPALGAAPTGDPKPKKNKKPKNPTPPRP 56

Query: 105 STTTTPASSGGAWCIANPSASETGLQVALDYACGF-GGADCSAIQPGASCYNPNTIHDH 162
           +      ++G A    +    +     A  Y C    GA     +    C       ++
Sbjct: 57  AGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNY 115

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 17/98 (17%), Positives = 23/98 (23%), Gaps = 4/98 (4%)

Query: 42  PVVNPTTPGTS--PPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTI 99
           P V   T   +  P T  PP         P       P  P+P        +      T+
Sbjct: 11  PGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATL 70

Query: 100 TPPAPSTTTTPASSGGAWCIANPSASETGLQVALDYAC 137
                        +    C   P    T +Q      C
Sbjct: 71  REHLRDIKAENTDANFYVC--PPPTGATVVQFEQPRRC 106

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 6/76 (7%)

Query: 42   PVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSP-PSPTTTGPSPPSPTT--TGPT 98
            P  +PT+P  SP   +P  SPT    SP SP+ +  SP  SPT+   SP SP+   T P+
Sbjct: 1576 PSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPS 1633

Query: 99   ITPPAPSTT-TTPASS 113
             +P +PS + T+P+ S
Sbjct: 1634 YSPTSPSYSPTSPSYS 1649

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 4/75 (5%)

Query: 42   PVVNPTTPGTSPPTVN-PPPSPTITGPSPP-SPTTTGPSPPSPTTTGPSPPSPTTTGPTI 99
            P  +PT+P  SP + +  P SP+ +  SP  SPT+   SP SP +  P+ PS + T P+ 
Sbjct: 1674 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSY 1732

Query: 100  TPPAPS-TTTTPASS 113
            +P +PS + T+P+ S
Sbjct: 1733 SPTSPSYSPTSPSYS 1747

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 46   PTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPT--TTGPTITPPA 103
            P     SP   +P  S    G    SP+ +  SP   T+    P SP+   T P+ +P +
Sbjct: 1530 PYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTS 1589

Query: 104  PS-TTTTPASS 113
            PS + T+P+ S
Sbjct: 1590 PSYSPTSPSYS 1600

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 28   SSPSLFITQLDANVPVVNPTTPGTSPPTVNP-PPSPTIT------GPSPP--SPTTTGPS 78
            +SPS   T      P  +PT+P  SP + +    SP+ +       P+ P  SPT+   S
Sbjct: 1581 TSPSYSPT-----SPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYS 1635

Query: 79   PPSPTTTGPSPPSPTTTGPTITPPAPS-TTTTPASSGGAWCIANPSASETGLQVALDYAC 137
            P SP+ + P+ PS + T P+ +P +PS + T+P+ S  +   +  S S +    +     
Sbjct: 1636 PTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1694

Query: 138  GFGGADCSAIQPGASCYNP 156
                    +  P +  Y+P
Sbjct: 1695 PSYSPTSPSYSPTSPSYSP 1713

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 42   PVVNPTTPGTSPPTVN-PPPSPTITGPSPP-SPTTTGPSPPSPTTTGPSPPSPTTTGPTI 99
            P  +PT+P  SP + +  P SP+ +  SP  SPT+   SP SP+ + P+ PS + T P+ 
Sbjct: 1688 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSY 1746

Query: 100  TPPAPS 105
            +P +PS
Sbjct: 1747 SPTSPS 1752

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 42   PVVNPTTPGTSPPTVNPPP------------SPTITGPSPPSPTTTGPSPP-SPTTTGPS 88
            P  +PT+P  SP + +  P            SPT    SP SP+ +  SP  SPT+   S
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1705

Query: 89   PPSPTT--TGPTITPPAPSTTTTPASSGGAWCIANPSASET 127
            P SP+   T P+ +P +PS     + +  ++   +PS S T
Sbjct: 1706 PTSPSYSPTSPSYSPTSPS----YSPTSPSYSPTSPSYSPT 1742

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 46  PTTPGTSPPTVNPPPSPT-ITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAP 104
           P       P+ +   + +       P  T   P+PP P       P  T TG ++     
Sbjct: 16  PRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRIL 75

Query: 105 STTTTPASS 113
              T P ++
Sbjct: 76  RGPTGPGTT 84

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 16/84 (19%), Positives = 19/84 (22%)

Query: 27  SSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTG 86
           ++S  L        VP   P  P        P      +         TGP   S     
Sbjct: 31  AASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAV 90

Query: 87  PSPPSPTTTGPTITPPAPSTTTTP 110
                P    P   PPA       
Sbjct: 91  RYGRQPGPEAPASAPPAAGRAVPG 114

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 9/74 (12%), Positives = 16/74 (21%)

Query: 52  SPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPSTTTTPA 111
           S    +   S  +   S     +   +  +        P  T   P   PP       P 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 112 SSGGAWCIANPSAS 125
            +     +      
Sbjct: 63  DTVTGDSVLQRILR 76

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 17/89 (19%), Positives = 21/89 (23%), Gaps = 2/89 (2%)

Query: 27  SSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSP--PSPTT 84
           SS      + +      V             P   P    P PP+P    P       + 
Sbjct: 11  SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70

Query: 85  TGPSPPSPTTTGPTITPPAPSTTTTPASS 113
                  PT  G T   PA      P   
Sbjct: 71  LQRILRGPTGPGTTSLAPAVRYGRQPGPE 99

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.8 bits (100), Expect = 6e-05
 Identities = 9/75 (12%), Positives = 16/75 (21%), Gaps = 2/75 (2%)

Query: 42  PVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITP 101
              +  + G  P              +  +        P  T   P+PP P        P
Sbjct: 5   HHHHHHSSGLVPRG--SHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 102 PAPSTTTTPASSGGA 116
              +  +        
Sbjct: 63  DTVTGDSVLQRILRG 77

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 10/81 (12%), Positives = 19/81 (23%)

Query: 47  TTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPST 106
           ++      +    P  +       S T+      +      + P P    P         
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 107 TTTPASSGGAWCIANPSASET 127
            T    S     +  P+   T
Sbjct: 63  DTVTGDSVLQRILRGPTGPGT 83

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 46  PTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPS 105
            T P  +PP   PPP+P    P       +         TGP   S          P P 
Sbjct: 43  VTVPDPAPP---PPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPE 99

Query: 106 TTTTPASSGG 115
              +   + G
Sbjct: 100 APASAPPAAG 109

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 6/88 (6%)

Query: 26  LSSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTT 85
           ++S+ S F+  L   V V +P  P    P    PP       +    +        PT  
Sbjct: 28  VTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP------DTVTGDSVLQRILRGPTGP 81

Query: 86  GPSPPSPTTTGPTITPPAPSTTTTPASS 113
           G +  +P         P    +  PA+ 
Sbjct: 82  GTTSLAPAVRYGRQPGPEAPASAPPAAG 109

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 42   PVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPP-SPTTTGPSPPSP--TTTGPT 98
            P  +PT+P  SP +  P  SPT    SP SP+ +  SP  SPT+   SP SP  +   P 
Sbjct: 1659 PAYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPA 1716

Query: 99   ITPPAPSTTTTPASS 113
             +P           +
Sbjct: 1717 YSPKQDEQKHNENEN 1731

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 27   SSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPP-SPTITGPSPP-SPTTTGPSPPSPTT 84
            S S S          P  +PT+P  SP + +  P SP+ +  SP  SPT+   SP SP  
Sbjct: 1602 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1661

Query: 85   TGPSPP-SPTTTGPTITPPAPSTTTTPASSGG-AWCIANPSASET 127
            +  SP  SPT+   + T P+ S T+   S     +   +PS S T
Sbjct: 1662 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPT 1706

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 27   SSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSP-PSPTTT 85
            S + S          P  +PT+P  SP   +P  SPT    SP SP+ +  SP  SPT+ 
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1610

Query: 86   GPSPPSPTT--TGPTITPPAPSTTTTPASSGGA 116
              SP SP+   T P+ +P +PS + T  S    
Sbjct: 1611 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1643

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 27   SSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPP-SPTTT 85
            +   +        + P  +PT+P  SP +  P  SPT    SP SP+ +  SP  SPT+ 
Sbjct: 1525 AYGEAPTSPGFGVSSPGFSPTSPTYSPTS--PAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1582

Query: 86   GPSPPSPTT--TGPTITPPAPS-TTTTPASS 113
              SP SP+   T P+ +P +PS + T+P+ S
Sbjct: 1583 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1613

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 13/104 (12%)

Query: 27   SSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPP--SPTTTGPSPPSPT- 83
            S S S          P  +PT+P  SP + +  P+     P+ P  SPT+   SP SP+ 
Sbjct: 1574 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1633

Query: 84   -----TTGPSPPSPTTTGPTITPPAP-----STTTTPASSGGAW 117
                 +  P+ PS + T P+ +P +P     S + +P S   + 
Sbjct: 1634 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSP 1677

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 39   ANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPP-SPTTTGPSPPSP--TTT 95
            +N  +    T                 G +P SP     SP  SPT+   SP SP  + T
Sbjct: 1500 SNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPT 1559

Query: 96   GPTITPPAPSTTTT 109
             P+ +P +PS + T
Sbjct: 1560 SPSYSPTSPSYSPT 1573

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 46   PTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPP-SPTTTGPSPPSP--TTTGPTITPP 102
                       +P    +  G SP SPT +  SP  SPT+   SP SP  + T P+ +P 
Sbjct: 1521 SPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1580

Query: 103  APSTTTT 109
            +PS + T
Sbjct: 1581 SPSYSPT 1587

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 46   PTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGPTITPPAPS 105
                  SP   +        G +       G +       G +P SP   G  ++ P  S
Sbjct: 1487 KDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSP---GFGVSSPGFS 1543

Query: 106  TTTTPASSGGAWCIANPSASETG 128
              T+P  S  +     P+ S T 
Sbjct: 1544 -PTSPTYSPTS-----PAYSPTS 1560

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 12/98 (12%), Positives = 27/98 (27%)

Query: 28  SSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGP 87
           S  +      +  +  +    P   PP+   P +   +  +     +T     SP    P
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69

Query: 88  SPPSPTTTGPTITPPAPSTTTTPASSGGAWCIANPSAS 125
                     +++     TT   A++           +
Sbjct: 70  GSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGA 107

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 15/94 (15%), Positives = 31/94 (32%)

Query: 35  TQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTT 94
           +   AN+P    T      P   PP + +       +  +   +  +     P+ PSP +
Sbjct: 12  SNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGS 71

Query: 95  TGPTITPPAPSTTTTPASSGGAWCIANPSASETG 128
           +G      + S      ++  A   +      +G
Sbjct: 72  SGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSG 105

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 39.4 bits (91), Expect = 7e-04
 Identities = 16/88 (18%), Positives = 27/88 (30%)

Query: 38  DANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPPSPTTTGPSPPSPTTTGP 97
           D   P   P  P  + P   P  +      +  +     P+ PSP ++G      + +  
Sbjct: 25  DLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNA 84

Query: 98  TITPPAPSTTTTPASSGGAWCIANPSAS 125
                A +  T     GG    A    +
Sbjct: 85  VKQTTAAAAATFSEQVGGGSGGAGRGGA 112

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 26  LSSSPSLFITQLDANVPVVNPTTPGTSPPTVNPPPSPTITGPSPPSPTTTGPSPP----- 80
           +     +F TQ+++++          + P+++P   P I  P       +  S P     
Sbjct: 9   VDDDDKMFSTQVNSSLTSPTGRGS-MAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMG 67

Query: 81  SPTTTGPSPPSPTTTGPTITPPAPSTTTTPASSGGAWCIANPSASET 127
            P +   SP  P +     TP    +T +P  S     +++    + 
Sbjct: 68  PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKP 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
2jon_A	101	Beta-1,3-glucanase; olive pollen, allergen; NMR {O	100.0
2w61_A	555	GAS2P, glycolipid-anchored surface protein 2; glyc	99.87

>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea}

Probab=100.00  E-value=1.2e-34  Score=229.49  Aligned_cols=90  Identities=38%  Similarity=0.816  Sum_probs=85.7

Q ss_pred             CCCcceeeCCCCChHHHHHHHHhhhcCCCCCccccCCCCCcCCCCChhhhhhhHHHHHHhhCC-CCCCCCCCcceEEEec
Q 048380          113 SGGAWCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTIHDHASYAFNDYYHKNP-APTSCVFGGAAQLTYT  191 (250)
Q Consensus       113 ~gslWCVAkp~as~s~Lq~aLDYACGqggaDCsaIq~GGsCY~PnTl~~hASYAFNsYYQ~~~-~~~ACDFsGsAtITt~  191 (250)
                      .+++|||+|+++++++||++||||||++ +||++|++||.||.|+++++|||||||+|||+++ ..++|||+|+|+|++.
T Consensus         9 ~~~~wCVak~~~~~~~l~~~ldyACg~g-aDC~~I~~gg~Cy~p~t~~~haSyAfN~YYq~~~~~~~aCdF~G~A~it~~   87 (101)
T 2jon_A            9 AAGSWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRNSWNCDFSQTATLTNT   87 (101)
T ss_dssp             CCSCEEEECTTSCHHHHHHHHHHHTTTS-SSSSTTCCCSSSCSSCCTTHHHHHHHHHHHHHHTSSGGGCCSCSSEEEESS
T ss_pred             CCCcEEEECCCCCHHHHHHHHHHHcCCC-CCccccCcCCcccCCCCHHHHHHHHHHHHHHHcCCCCCccCCCCeEEEeec
Confidence            3788999999999999999999999986 9999999999999999999999999999999985 7899999999999999


Q ss_pred             CCCCccCCCCCCeEEecc
Q 048380          192 DPSKLCSSERNNQLYEFS  209 (250)
Q Consensus       192 DPS~sC~~~~g~C~f~~s  209 (250)
                      |||.      |.|+|+++
T Consensus        88 dPS~------g~C~f~~~   99 (101)
T 2jon_A           88 NPSY------GACNFPSG   99 (101)
T ss_dssp             CCCC------SSSCCCCS
T ss_pred             CCCC------CceecCCC
Confidence            9999      99999874

>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A*

Probab=99.87  E-value=9.2e-24  Score=205.34  Aligned_cols=88  Identities=19%  Similarity=0.258  Sum_probs=81.9

Q ss_pred             CCcceeeCCC-CChHHHHHHHHhhhcCCCCCccccCCCCC-----cCCCCChhhhhhhHHHHHHhhCC-CCCCCCCCcc-
Q 048380          114 GGAWCIANPS-ASETGLQVALDYACGFGGADCSAIQPGAS-----CYNPNTIHDHASYAFNDYYHKNP-APTSCVFGGA-  185 (250)
Q Consensus       114 gslWCVAkp~-as~s~Lq~aLDYACGqggaDCsaIq~GGs-----CY~PnTl~~hASYAFNsYYQ~~~-~~~ACDFsGs-  185 (250)
                      +++|||++++ +++++||++||||||+  +||++|++||.     ||++|++++|||||||+|||+++ ..++|||+|+ 
T Consensus       395 ~~~~Cv~~~~~~~~~~l~~~~~yaC~~--~dC~~I~~~g~~g~yG~~~~~~~~~~~Sya~n~yyq~~~~~~~~C~F~g~~  472 (555)
T 2w61_A          395 EILPCEIVPFGAESGKYEEYFSYLCSK--VDCSDILANGKTGEYGEFSDCSVEQKLSLQLSKLYCKIGANDRHCPLNDKN  472 (555)
T ss_dssp             HHCSEEECCTTCCGGGHHHHHHHHTTT--SCGGGGCEETTTTEECTTTTSCHHHHHHHHHHHHHHHHCCCSSCCSCCCTT
T ss_pred             cCCeeecCCCCCCHHHHHHHHHHHhCc--CCCccccCCCcCCCccccCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCc
Confidence            4689999999 9999999999999997  79999999999     69999999999999999999985 7899999999 


Q ss_pred             -----eEEEecCCCCccCCCCCCeEEeccc
Q 048380          186 -----AQLTYTDPSKLCSSERNNQLYEFSS  210 (250)
Q Consensus       186 -----AtITt~DPS~sC~~~~g~C~f~~s~  210 (250)
                           |+++ .+||.      |+|+|..+.
T Consensus       473 ~~~~~a~~~-~~~s~------~~C~~~~~~  495 (555)
T 2w61_A          473 VYFNLESLQ-PLTSE------SICKNVFDS  495 (555)
T ss_dssp             EEECGGGGS-CCCTT------CTTHHHHHH
T ss_pred             ccccceEEE-eCCCC------CchHhHHHh
Confidence                 9999 88999      999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00