Citrus Sinensis ID: 048434

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MEKAASLKLVALLAVLFCFVNIATNSRPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHLTNLIVTFTTMRSIVIMVI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccEEEEEEEEEccccEEEEEEEEccccccccEEEcccccccccccccEEEEEEEEEEEEEcccEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccccccccccccEEEEEcEcccccccEEEEEEEccccEEEEEEEEccccEEccEEEEcccEEEccccccEEHHHHHHEHEHHHHcEEEEEEc
Coil and Loop (DISEMBL)
MEKAASLKLVALLAVLFCFVniatnsrphskaiavldgsegfkgtvsfyqedghhTVITVNLanlkagshgfhvhesgfiRATTVGNILTHLTNLIVTFTTMRSIVIMVI
Flexible Loop (DISEMBL)
MEKAASLKLVALLAVLFCFVNIATNSRPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHLTNlivtfttmRSIVIMVI
Low Complexity Region (SEG)
MEkaaslklvallavlFCFVNIATNSRPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHLTNLIVTFTTMRSIVIMVI
Disordered region (IsUnstruct)
******LKLVALLAVLFCFVNIATNSRPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHLTNLIVTFTTMRSIVIMV*
Disordered Region (DISOPRED)
*********VALLAVLFCFVNIAT**RPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHLTNLIVTFTTMRSIVIMVI
Disordered Region (DISEMBL)
MEKAASLKLVALLAVLFCFVNIATNSRPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHLTNLIVTFTTMRSIVIMVI
Disordered Region (DISPRO)
***AASLKLVALLAVLFCFVNIATNSRPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHLTNLIVTFTTMRSIVIMVI
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKAASLKLVALLAVLFCFVNIATNSRPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHLTNLIVTFTTMRSIVIMVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
O65174	152	Superoxide dismutase [Cu-	N/A	no	0.409	0.296	0.622	5e-07
Q8L5E0	152	Superoxide dismutase [Cu-	N/A	no	0.409	0.296	0.577	2e-06
O49073	152	Superoxide dismutase [Cu-	N/A	no	0.409	0.296	0.533	3e-06
Q9SQL5	152	Superoxide dismutase [Cu-	N/A	no	0.409	0.296	0.555	3e-06
O65199	212	Superoxide dismutase [Cu-	yes	no	0.536	0.278	0.4	3e-06
O04996	153	Superoxide dismutase [Cu-	N/A	no	0.409	0.294	0.565	4e-06
Q07796	152	Superoxide dismutase [Cu-	N/A	no	0.409	0.296	0.555	5e-06
P23345	152	Superoxide dismutase [Cu-	N/A	no	0.409	0.296	0.555	6e-06
P93258	152	Superoxide dismutase [Cu-	N/A	no	0.409	0.296	0.533	6e-06
Q7M1R5	152	Superoxide dismutase [Cu-	no	no	0.409	0.296	0.577	6e-06

>sp|O65174|SODC_ZANAE Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 32/45 (71%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL GSEG +GTV F QE    T IT +L+ LK G HGFHVH
Sbjct: 3  KAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVH 47

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
Zantedeschia aethiopica (taxid: 69721)
EC: 1EC: .EC: 1EC: 5EC: .EC: 1EC: .EC: 1

>sp|Q8L5E0|ALL5B_OLEEU Superoxide dismutase [Cu-Zn] 2 OS=Olea europaea GN=OLE5 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 30/45 (66%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+ VL+ SEG  GTV F QE    T +T NL+ LK G HGFHVH
Sbjct: 3  KAVTVLNSSEGVTGTVYFTQEGDGPTTVTGNLSGLKPGLHGFHVH 47

Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Probably involved in the protection against oxidative stress during pollen development.

Olea europaea (taxid: 4146)

EC: 1

EC: .

EC: 1

EC: 5

EC: .

EC: 1

EC: .

EC: 1

>sp|O49073|SODC_PAUKA Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 29/45 (64%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          K +AVL  SEG  GT+ F QE    T +T N++ LK G HGFHVH
Sbjct: 3  KGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVH 47

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

Paulownia kawakamii (taxid: 70770)

EC: 1

EC: .

EC: 1

EC: 5

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SQL5|SODC_ANACO Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 31/45 (68%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL  SEG KGT+ F QE    T +T +++ LK G HGFHVH
Sbjct: 3  KAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVH 47

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

Ananas comosus (taxid: 4615)

EC: 1

EC: .

EC: 1

EC: 5

EC: .

EC: 1

EC: .

EC: 1

>sp|O65199|SODCP_VITVI Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 20  VNIATNSRPHS------KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFH 73
           + +AT  +P S      KA+AVL G+   +G V+  QED   T ++V +  L  G+HGFH
Sbjct: 45  IPLATAPKPLSVVAVTKKAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFH 104

Query: 74  VHESG 78
           +HE G
Sbjct: 105 LHEFG 109

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

Vitis vinifera (taxid: 29760)

EC: 1

EC: .

EC: 1

EC: 5

EC: .

EC: 1

EC: .

EC: 1

>sp|O04996|SODC_SOLCS Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 31 KAIAVLDGSEGFKGTVSFYQE-DGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL  SEG  GT+ F QE +G  T +T +L+ LK G HGFHVH
Sbjct: 3  KAVAVLSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVH 48

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

Solidago canadensis var. scabra (taxid: 59294)

EC: 1

EC: .

EC: 1

EC: 5

EC: .

EC: 1

EC: .

EC: 1

>sp|Q07796|SODC_IPOBA Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 30/45 (66%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL  SEG  GT+ F QE    T +T N++ LK G HGFHVH
Sbjct: 3  KAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVH 47

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

Ipomoea batatas (taxid: 4120)

EC: 1

EC: .

EC: 1

EC: 5

EC: .

EC: 1

EC: .

EC: 1

>sp|P23345|SODC4_MAIZE Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 31/45 (68%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL  SEG KGT+ F QE    T +T +++ LK G HGFHVH
Sbjct: 3  KAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVH 47

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: 5

EC: .

EC: 1

EC: .

EC: 1

>sp|P93258|SODC1_MESCR Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 29/45 (64%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+ VL  SEG  GTV F QE    T +T N++ L+ G HGFHVH
Sbjct: 3  KAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVH 47

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 1

EC: .

EC: 1

EC: 5

EC: .

EC: 1

EC: .

EC: 1

>sp|Q7M1R5|SODC_SOYBN Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 30/45 (66%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL  SEG  GT+ F QE    T +T +LA LK G HGFHVH
Sbjct: 3  KAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVH 47

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: 5

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
164654158	152	copper/zinc-superoxide dismutase [Litchi	0.409	0.296	0.622	1e-06
33340236	152	copper/zinc superoxide dismutase [Citrus	0.409	0.296	0.6	1e-06
162135925	152	cytosolic copper/zinc-superoxide dismuta	0.409	0.296	0.622	2e-06
19172405	152	copper/zinc superoxide dismutase [Sander	0.409	0.296	0.622	3e-06
381141812	152	Cu/Zn superoxide dismutase [Tetradium ru	0.409	0.296	0.622	7e-06
118489905	121	unknown [Populus trichocarpa x Populus d	0.409	0.371	0.577	9e-06
95100501	152	Cu-Zn superoxide dismutase [Arachis hypo	0.409	0.296	0.6	1e-05
71040665	152	Cu-Zn superoxide dismutase [Arachis hypo	0.409	0.296	0.6	1e-05
146215972	152	copper/zinc superoxide dismutase [Caraga	0.409	0.296	0.6	1e-05
224125448	152	predicted protein [Populus trichocarpa]	0.409	0.296	0.577	2e-05

>gi|164654158|gb|ABY65355.1| copper/zinc-superoxide dismutase [Litchi chinensis] gi|436805717|gb|AGB58021.1| copper/zinc-superoxide dismutase [Litchi chinensis]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 34/45 (75%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL+GSEG KGTV+F QE    T +T +L+ LK G HGFHVH
Sbjct: 3  KAVAVLNGSEGVKGTVNFTQEGDGPTTVTGSLSGLKPGLHGFHVH 47

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33340236|gb|AAQ14591.1| copper/zinc superoxide dismutase [Citrus limon]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL G+EG KGTVSF QE    T ++ +L+ LK G HGFHVH
Sbjct: 3  KAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVH 47

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162135925|gb|ABV79894.2| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|210111952|gb|ACJ07158.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|254031694|gb|ACT54525.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|257132934|gb|ACV42800.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|345018986|gb|ADK70175.2| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|345018988|gb|ADK70176.2| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|345106304|gb|AEN71837.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 33/45 (73%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL+GSEG KGTV+F QE    T +T +L  LK G HGFHVH
Sbjct: 3  KAVAVLNGSEGVKGTVNFTQEGDGPTTVTGSLCGLKPGLHGFHVH 47

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19172405|gb|AAL85888.1|AF479059_1 copper/zinc superoxide dismutase [Sandersonia aurantiaca]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 33/45 (73%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL+GSEG KGTV F QE    T +T +L+ LK G HGFHVH
Sbjct: 3  KAVAVLNGSEGVKGTVFFTQEGDGPTTVTASLSGLKPGLHGFHVH 47

Source: Sandersonia aurantiaca

Species: Sandersonia aurantiaca

Genus: Sandersonia

Family: Liliaceae

Order: Liliales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381141812|gb|AFF57842.1| Cu/Zn superoxide dismutase [Tetradium ruticarpum]

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 32/45 (71%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL  SEG KGTVSF QE    T +T +L+ LK G HGFHVH
Sbjct: 3  KAVAVLGSSEGVKGTVSFTQEGDGPTTVTGSLSGLKPGLHGFHVH 47

Source: Tetradium ruticarpum

Species: Tetradium ruticarpum

Genus: Tetradium

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489905|gb|ABK96750.1| unknown [Populus trichocarpa x Populus deltoides]

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 32/45 (71%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL+ SEG KGT++F QE    T +T +L  LK G HGFHVH
Sbjct: 3  KAVAVLNSSEGVKGTINFTQEGDGPTTVTGSLCGLKPGLHGFHVH 47

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|95100501|gb|ABF51006.1| Cu-Zn superoxide dismutase [Arachis hypogaea]

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 30/45 (66%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL  SEG  GT+ F QE    T +T NLA LK G HGFHVH
Sbjct: 3  KAVAVLSSSEGVSGTIQFSQEGNGPTTVTGNLAGLKPGLHGFHVH 47

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71040665|gb|AAZ20281.1| Cu-Zn superoxide dismutase [Arachis hypogaea]

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 30/45 (66%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL  SEG  GT+ F QE    T +T NLA LK G HGFHVH
Sbjct: 3  KAVAVLSSSEGVSGTIQFSQEGNGPTTVTGNLAGLKPGLHGFHVH 47

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146215972|gb|ABQ10188.1| copper/zinc superoxide dismutase [Caragana jubata]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 31/45 (68%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL  +EG  GT+SF QE    T +T NLA LK G HGFHVH
Sbjct: 3  KAVAVLGSNEGVTGTISFSQEGNGPTTVTGNLAGLKPGLHGFHVH 47

Source: Caragana jubata

Species: Caragana jubata

Genus: Caragana

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125448|ref|XP_002319589.1| predicted protein [Populus trichocarpa] gi|118488274|gb|ABK95956.1| unknown [Populus trichocarpa] gi|222857965|gb|EEE95512.1| predicted protein [Populus trichocarpa]

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 32/45 (71%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVH 75
          KA+AVL+ SEG KGT++F QE    T +T +L  LK G HGFHVH
Sbjct: 3  KAVAVLNSSEGVKGTINFTQEGDGPTTVTGSLCGLKPGLHGFHVH 47

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
UNIPROTKB|P28757	152	SODCC2 "Superoxide dismutase [	0.436	0.315	0.541	2.6e-08
DICTYBASE|DDB_G0290343	152	sodE "putative cytoplasmatic s	0.418	0.302	0.458	6.1e-08
FB|FBgn0033631	250	Sod3 "Superoxide dismutase 3"	0.490	0.216	0.442	1.3e-07
ZFIN|ZDB-GENE-990415-258	154	sod1 "superoxide dismutase 1,	0.445	0.318	0.44	2.5e-07
UNIPROTKB|Q0DRV6	152	SODCC1 "Superoxide dismutase [	0.436	0.315	0.479	2.9e-07
TAIR|locus:2025595	152	CSD1 "copper/zinc superoxide d	0.445	0.322	0.469	2.9e-07
TAIR|locus:2046168	216	CSD2 "copper/zinc superoxide d	0.518	0.263	0.433	6.5e-07
UNIPROTKB|P93407	211	SODCP "Superoxide dismutase [C	0.518	0.270	0.433	2.3e-06
UNIPROTKB|P07509	154	sod-1 "Superoxide dismutase [C	0.436	0.311	0.42	3.3e-06
POMBASE|SPAC821.10c	154	sod1 "superoxide dismutase Sod	0.436	0.311	0.38	3.4e-06

UNIPROTKB|P28757 SODCC2 "Superoxide dismutase [Cu-Zn] 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 26/48 (54%), Positives = 32/48 (66%)

Query:    31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
             KA+AVL  SEG KGT+ F QE    T +T +++ LK G HGFHVH  G
Sbjct:     3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALG 50

GO:0004784 "superoxide dismutase activity" evidence=IBA

GO:0005507 "copper ion binding" evidence=IBA

GO:0008270 "zinc ion binding" evidence=IBA

GO:0019430 "removal of superoxide radicals" evidence=IBA

DICTYBASE|DDB_G0290343 sodE "putative cytoplasmatic superoxide dismutase" [Dictyostelium discoideum (taxid:44689)]

 Score = 99 (39.9 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query:    32 AIAVLDGSEGFKGTVSFYQEDGHHTVITVN-LANLKAGSHGFHVHESG 78
             AI V+ G +G  G ++F Q D    VI    ++ LK G HGFHVHE G
Sbjct:     3 AICVIKG-DGVDGIINFKQNDNKSPVIISGVISGLKEGKHGFHVHEFG 49

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006801 "superoxide metabolic process" evidence=IEA

GO:0004784 "superoxide dismutase activity" evidence=IEA;ISS;IBA

GO:0042554 "superoxide anion generation" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0019430 "removal of superoxide radicals" evidence=IBA

GO:0008270 "zinc ion binding" evidence=IBA

GO:0005507 "copper ion binding" evidence=IBA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

FB|FBgn0033631 Sod3 "Superoxide dismutase 3" [Drosophila melanogaster (taxid:7227)]

 Score = 100 (40.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 27/61 (44%), Positives = 34/61 (55%)

Query:    24 TNSRPHSKAIAVLDG---SEG--FKGTVSFYQED-GHHTVITVNLANLKAGSHGFHVHES 77
             T + P  +AIA L G   S+    KG V+F Q D G +  + V L  LK G HGFH+HE 
Sbjct:    54 TRNMP-IQAIAYLIGPVQSDNTQVKGNVTFTQNDCGQNVHVRVQLEGLKEGKHGFHIHEK 112

Query:    78 G 78
             G
Sbjct:   113 G 113

GO:0004784 "superoxide dismutase activity" evidence=ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009650 "UV protection" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0005615 "extracellular space" evidence=IDA

GO:0019430 "removal of superoxide radicals" evidence=IBA

GO:0005507 "copper ion binding" evidence=IBA

GO:0008270 "zinc ion binding" evidence=IBA

GO:0005739 "mitochondrion" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

ZFIN|ZDB-GENE-990415-258 sod1 "superoxide dismutase 1, soluble" [Danio rerio (taxid:7955)]

 Score = 95 (38.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query:    30 SKAIAVLDGSEGFKGTVSFYQEDGHHTV-ITVNLANLKAGSHGFHVHESG 78
             +KA+ VL G+    GTV F QE     V +T  +  L  G HGFHVH  G
Sbjct:     3 NKAVCVLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFG 52

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004784 "superoxide dismutase activity" evidence=IEA;IDA

GO:0006801 "superoxide metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IBA

GO:0005507 "copper ion binding" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0019430 "removal of superoxide radicals" evidence=IBA

GO:0008270 "zinc ion binding" evidence=IBA

GO:0070050 "neuron homeostasis" evidence=IMP

GO:0051597 "response to methylmercury" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=IDA

GO:0010038 "response to metal ion" evidence=IDA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q0DRV6 SODCC1 "Superoxide dismutase [Cu-Zn] 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 23/48 (47%), Positives = 30/48 (62%)

Query:    31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
             KA+ VL  SE  KGT+ F QE    T +T +++ LK G HGFH+H  G
Sbjct:     3 KAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALG 50

GO:0004784 "superoxide dismutase activity" evidence=IBA

GO:0005507 "copper ion binding" evidence=IBA

GO:0008270 "zinc ion binding" evidence=IBA

GO:0019430 "removal of superoxide radicals" evidence=IBA

TAIR|locus:2025595 CSD1 "copper/zinc superoxide dismutase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 23/49 (46%), Positives = 31/49 (63%)

Query:    30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
             +K +AVL+ SEG  GT+ F QE    T ++  ++ LK G HGFHVH  G
Sbjct:     2 AKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALG 50

GO:0004784 "superoxide dismutase activity" evidence=IEA;IDA;TAS

GO:0005507 "copper ion binding" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

GO:0005737 "cytoplasm" evidence=ISM;NAS

GO:0008270 "zinc ion binding" evidence=IBA

GO:0019430 "removal of superoxide radicals" evidence=IC;IBA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0006979 "response to oxidative stress" evidence=IEP;TAS

GO:0046688 "response to copper ion" evidence=IEP

GO:0010039 "response to iron ion" evidence=IEP

GO:0034599 "cellular response to oxidative stress" evidence=IEP

GO:0035195 "gene silencing by miRNA" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0071329 "cellular response to sucrose stimulus" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0010193 "response to ozone" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0071280 "cellular response to copper ion" evidence=IEP

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0071457 "cellular response to ozone" evidence=IEP

GO:0071484 "cellular response to light intensity" evidence=IEP

GO:0071493 "cellular response to UV-B" evidence=IEP

TAIR|locus:2046168 CSD2 "copper/zinc superoxide dismutase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 6.5e-07, P = 6.5e-07
 Identities = 26/60 (43%), Positives = 34/60 (56%)

Query:    31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILT 90
             KA+AVL G+   +G V+  Q+D   T + V +  L  G HGFH+HE G    TT G I T
Sbjct:    66 KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFG---DTTNGCIST 122

GO:0004784 "superoxide dismutase activity" evidence=IEA;IDA

GO:0005507 "copper ion binding" evidence=IBA

GO:0008270 "zinc ion binding" evidence=IBA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0019430 "removal of superoxide radicals" evidence=IC;IBA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0046688 "response to copper ion" evidence=IEP

GO:0009579 "thylakoid" evidence=IDA

GO:0010039 "response to iron ion" evidence=IEP

GO:0034599 "cellular response to oxidative stress" evidence=IEP

GO:0035195 "gene silencing by miRNA" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0071329 "cellular response to sucrose stimulus" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0071457 "cellular response to ozone" evidence=IEP

GO:0071484 "cellular response to light intensity" evidence=IEP

GO:0071493 "cellular response to UV-B" evidence=IEP

UNIPROTKB|P93407 SODCP "Superoxide dismutase [Cu-Zn], chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 26/60 (43%), Positives = 34/60 (56%)

Query:    31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILT 90
             KA+AVL G+   +G V+  Q+D   T + V +  L  G HGFH+HE G    TT G I T
Sbjct:    61 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFG---DTTNGCIST 117

GO:0004784 "superoxide dismutase activity" evidence=IBA

GO:0005507 "copper ion binding" evidence=IBA

GO:0008270 "zinc ion binding" evidence=IBA

GO:0019430 "removal of superoxide radicals" evidence=IBA

UNIPROTKB|P07509 sod-1 "Superoxide dismutase [Cu-Zn]" [Neurospora crassa OR74A (taxid:367110)]

 Score = 86 (35.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query:    31 KAIAVLDGSEGFKGTVSFYQE-DGHHTVITVNLA-NLKAGSHGFHVHESG 78
             KA+AV+ G    KGTV F QE +   T IT +++ N      GFH+H  G
Sbjct:     3 KAVAVVRGDSNVKGTVIFEQESESAPTTITYDISGNDPNAKRGFHIHTFG 52

GO:0004784 "superoxide dismutase activity" evidence=IBA

GO:0005507 "copper ion binding" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005739 "mitochondrion" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0008270 "zinc ion binding" evidence=IBA

GO:0019430 "removal of superoxide radicals" evidence=IBA

POMBASE|SPAC821.10c sod1 "superoxide dismutase Sod1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 78 (32.5 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query:    31 KAIAVLDGSEGFKGTVSFYQEDGHHTV-ITVNLANLKAGS-HGFHVHESG 78
             +A+AVL G     G V+F Q D +  V + V+L    A +  GFH+H+ G
Sbjct:     3 RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFG 52

GO:0001320 "age-dependent response to reactive oxygen species involved in chronological cell aging" evidence=ISO

GO:0004784 "superoxide dismutase activity" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0006878 "cellular copper ion homeostasis" evidence=ISS

GO:0006882 "cellular zinc ion homeostasis" evidence=IMP

GO:0019430 "removal of superoxide radicals" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0045454 "cell redox homeostasis" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0071451 "cellular response to superoxide" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.15.1.1	LOW CONFIDENCE prediction!
3rd Layer	1.15.1	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	110
PLN02386	152	PLN02386, PLN02386, superoxide dismutase [Cu-Zn]	2e-10
pfam00080	140	pfam00080, Sod_Cu, Copper/zinc superoxide dismutas	3e-10
cd00305	144	cd00305, Cu-Zn_Superoxide_Dismutase, Copper/zinc s	5e-10
COG2032	179	COG2032, SodC, Cu/Zn superoxide dismutase [Inorgan	2e-07
PLN02642	164	PLN02642, PLN02642, copper, zinc superoxide dismut	4e-04

>gnl|CDD|166027 PLN02386, PLN02386, superoxide dismutase [Cu-Zn]

 Score = 53.8 bits (129), Expect = 2e-10
 Identities = 27/48 (56%), Positives = 33/48 (68%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          KA+AVL+ SEG KGT+ F QE    T +T +L+ LK G HGFHVH  G
Sbjct: 3  KAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALG 50

Length = 152

>gnl|CDD|215700 pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 32 AIAVLDGSEG-FKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          A+AVL G+ G   GTV+F Q  G   ++TV+L+ L  G HGFH+HE G
Sbjct: 1  AVAVLKGAGGKVVGTVTFTQVGGGGVLVTVDLSGLPPGKHGFHIHEFG 48

superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold. Length = 140

>gnl|CDD|238186 cd00305, Cu-Zn_Superoxide_Dismutase, Copper/zinc superoxide dismutase (SOD)

 Score = 52.6 bits (127), Expect = 5e-10
 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 31 KAIAVLDGSEGF-KGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
           A+AVL G +G   GTV+F Q+ G    IT  L+ L  G HGFH+HE G
Sbjct: 2  SAVAVLKGPDGKVVGTVTFTQQSGG-VTITGELSGLTPGLHGFHIHEFG 49

superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730]. Length = 144

>gnl|CDD|224943 COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 7  LKLVALLAVLFCFVNIATNSRPHSKAIAVLDGSEGFK-GTVSFYQEDGHHTVITVNLANL 65
          L L AL   +    + A  +    KA AVL    G   GTV+   E G+  + T  L  L
Sbjct: 6  LALAALGVAMAGAASPAQAASQEVKANAVLVDGTGKDVGTVTI-TETGYGLLFTPALGGL 64

Query: 66 KAGSHGFHVHESG 78
            G HGFH+HE G
Sbjct: 65 PPGEHGFHIHEKG 77

Length = 179

>gnl|CDD|178248 PLN02642, PLN02642, copper, zinc superoxide dismutase

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 27 RPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          R + +A+A++ G    +G + F Q+    T +T  ++ L  G HGFH+H  G
Sbjct: 5  RGNLRAVALIAGDNNVRGCLQFVQDIFGTTHVTGKISGLSPGFHGFHIHSFG 56

Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
PLN02642	164	copper, zinc superoxide dismutase	99.76
PRK10290	173	superoxide dismutase; Provisional	99.74
PRK15388	177	Cu/Zn superoxide dismutase; Provisional	99.73
PLN02386	152	superoxide dismutase [Cu-Zn]	99.73
KOG0441	154	consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Ino	99.64
cd00305	144	Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide	99.63
PLN02957	238	copper, zinc superoxide dismutase	99.62
COG2032	179	SodC Cu/Zn superoxide dismutase [Inorganic ion tra	99.55
PF00080	142	Sod_Cu: Copper/zinc superoxide dismutase (SODC); I	99.49
KOG4656	247	consensus Copper chaperone for superoxide dismutas	99.29
PF07452	119	CHRD: CHRD domain; InterPro: IPR010895 CHRD (after	90.89
COG4704	151	Uncharacterized protein conserved in bacteria [Fun	90.42
smart00754	118	CHRD A domain in the BMP inhibitor chordin and in	82.63

>PLN02642 copper, zinc superoxide dismutase

Probab=99.76  E-value=3.1e-18  Score=128.43  Aligned_cols=67  Identities=27%  Similarity=0.461  Sum_probs=57.7

Q ss_pred             CCCCcceEEEEEcCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           25 NSRPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        25 ~~~~~~kAvavl~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      +++..++|+|++++++++.|+|+|+|..++.++|+++++|||||+|||||||+|||+++|.+. ..||
T Consensus         3 ~~~~~~~A~a~~~g~~~v~G~v~f~q~~~g~v~I~~~v~GL~pG~HG~HIHe~Gd~~~g~~Sa-GgHf   69 (164)
T PLN02642          3 APRGNLRAVALIAGDNNVRGCLQFVQDIFGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCIST-GPHF   69 (164)
T ss_pred             ccCCCeeEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEcCCCCCceeEEEcCCCcCCCCcccc-cCcc
Confidence            455679999999998889999999998866699999999999999999999999999875333 4554

>PRK10290 superoxide dismutase; Provisional

Probab=99.74  E-value=1.5e-17  Score=125.59  Aligned_cols=45  Identities=29%  Similarity=0.506  Sum_probs=41.9

Q ss_pred             CCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCC
Q 048434           38 GSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRAT   83 (110)
Q Consensus        38 g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g   83 (110)
                      +++++.|+++|+|.++| |+|+++++|||||+|||||||+|||+++
T Consensus        33 ~~g~~~G~v~f~~~~~g-v~i~~~l~GL~pG~HGfHIHe~Gdc~~~   77 (173)
T PRK10290         33 GVGQSIGSVTITETDKG-LEFSPDLKALPPGEHGFHIHAKGSCQPA   77 (173)
T ss_pred             CCCceEEEEEEEEcCCc-EEEEEEEcCCCCCceEEEEeCCCccCCc
Confidence            46899999999999988 9999999999999999999999999854

>PRK15388 Cu/Zn superoxide dismutase; Provisional

Probab=99.73  E-value=1.8e-17  Score=125.62  Aligned_cols=54  Identities=26%  Similarity=0.330  Sum_probs=46.0

Q ss_pred             cceEEEEE-cCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCC
Q 048434           29 HSKAIAVL-DGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRAT   83 (110)
Q Consensus        29 ~~kAvavl-~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g   83 (110)
                      ..++...+ +++++++|+++|+|.++| ++|+++++|||||+|||||||+|||+++
T Consensus        25 ~~~~~~~~~~~~g~~~G~v~f~~~~~g-v~I~~~l~GL~pG~HGfHIHe~GdC~~~   79 (177)
T PRK15388         25 TVKMNDALSSGTGENIGEITVSETPYG-LLFTPHLNGLTPGIHGFHVHTNPSCMPG   79 (177)
T ss_pred             cEEEEEeecCCCCceEEEEEEEEcCCc-EEEEEEEcCCCCcceEEEEccCCCccCc
Confidence            34444433 467899999999999988 8999999999999999999999999853

>PLN02386 superoxide dismutase [Cu-Zn]

Probab=99.73  E-value=1.4e-17  Score=123.10  Aligned_cols=62  Identities=45%  Similarity=0.624  Sum_probs=54.2

Q ss_pred             ceEEEEEcCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        30 ~kAvavl~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      ++|+|++++++.+.|+|+|+|.+++.+.|+++++|||||+|||||||+|||+++|.+. ..||
T Consensus         2 ~~a~a~~~~~~~v~G~v~f~q~~~g~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~Sa-GgHf   63 (152)
T PLN02386          2 VKAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMST-GPHF   63 (152)
T ss_pred             ceEEEEEcCCCCCEEEEEEEEcCCCCEEEEEEEeCCCCCceeEEEeCCCCCCCCcccc-cCcc
Confidence            5789999998889999999998777799999999999999999999999999876433 4554

>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]

Probab=99.64  E-value=4.6e-16  Score=115.90  Aligned_cols=65  Identities=29%  Similarity=0.393  Sum_probs=57.7

Q ss_pred             ceEEEEEcCCC-CeEEEEEEEEeCCc-eEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhhcce
Q 048434           30 SKAIAVLDGSE-GFKGTVSFYQEDGH-HTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHLTNL   95 (110)
Q Consensus        30 ~kAvavl~g~g-~v~G~V~f~q~~~G-~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~~~~   95 (110)
                      .++++++++++ ++.|++.|+|..++ ++.+++.++|||||+||||||||||.++||.+. .+||-.+
T Consensus         2 ~~~~avl~g~~~~V~G~i~F~Q~~~~~~~~v~~~i~GL~pg~hgfHvHqfGD~t~GC~Sa-GphFNp~   68 (154)
T KOG0441|consen    2 AQAVAVLEGDEIQVIGVITFEQFLPGEPLRVSGEVTGLPPGKHGFHVHQFGDNTNGCKSA-GPHFNPN   68 (154)
T ss_pred             cceEEEEecCCCCceeEEEEEEcCCCCcEEEEEEEecCCCceeeEEEEeccCCCCChhcC-CCCCCCc
Confidence            37899999875 89999999995544 799999999999999999999999999999888 8888655

>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD)

Probab=99.63  E-value=9.8e-16  Score=111.31  Aligned_cols=61  Identities=39%  Similarity=0.565  Sum_probs=51.1

Q ss_pred             ceEEEEEcC-CCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           30 SKAIAVLDG-SEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        30 ~kAvavl~g-~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      ++|+|.+++ ++++.|+|+|+|.+++ ++|++++.|||||+|||||||+|||+++|. ....|+
T Consensus         1 ~~a~~~l~~~~g~v~G~v~f~q~~~~-v~v~~~l~GL~pG~hg~HIHe~Gd~~~~~~-saGgh~   62 (144)
T cd00305           1 VSAVAVLKGPDGKVVGTVTFTQQSGG-VTITGELSGLTPGLHGFHIHEFGDCTNGCT-SAGGHF   62 (144)
T ss_pred             CcEEEEEECCCCceEEEEEEEECCCC-EEEEEEEECCCCCceeEEEEecCCCCCccc-cccCcc
Confidence            367888885 4689999999999886 999999999999999999999999985542 235554

superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].

>PLN02957 copper, zinc superoxide dismutase

Probab=99.62  E-value=1.9e-15  Score=117.48  Aligned_cols=61  Identities=25%  Similarity=0.354  Sum_probs=51.4

Q ss_pred             ceEEEEEcCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        30 ~kAvavl~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      .+|++.++|+ ++.|+++|+|.+++.+.|+++++|||||.|||||||+|||++++.+. ..||
T Consensus        81 ~~av~~~~g~-~v~G~v~~~~~~~~~v~i~~~~~GL~pg~hg~hiHe~Gd~~~~~~sa-G~hf  141 (238)
T PLN02957         81 SAAVAEFKGP-DIFGVVRFAQVSMELARIEAAFSGLSPGTHGWSINEYGDLTRGAAST-GKVY  141 (238)
T ss_pred             ceEEEEecCC-ceEEEEEEEEcCCCCEEEEEEEcCCCCCcEEEEEcCCCCCCCCcccc-CCCC
Confidence            5688888875 58999999999876699999999999999999999999999875332 4454

>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]

Probab=99.55  E-value=2.1e-14  Score=109.23  Aligned_cols=53  Identities=38%  Similarity=0.485  Sum_probs=47.8

Q ss_pred             cceEEEEEc-CCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCC
Q 048434           29 HSKAIAVLD-GSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRA   82 (110)
Q Consensus        29 ~~kAvavl~-g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~   82 (110)
                      .+++.+.+. ++|+..|+|+++|.+.| +.++..+.|||||+|||||||+|+|++
T Consensus        28 ~~~~~~~~~~~~G~~vG~vt~~e~~~g-~~~~~~~~~L~pg~hGfHIHe~G~C~p   81 (179)
T COG2032          28 EVKANAVLVDGTGKDVGTVTITETGYG-LLFTPALGGLPPGEHGFHIHEKGSCTP   81 (179)
T ss_pred             cccceeeccCCCCceeEEEEEeecCCc-eEEeecccCCCCcceeEEecccCCCcC
Confidence            346666665 57889999999999999 999999999999999999999999999

>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []

Probab=99.49  E-value=1.6e-13  Score=98.23  Aligned_cols=61  Identities=38%  Similarity=0.580  Sum_probs=50.6

Q ss_pred             EEEEEcC-CCCeEEEEEEEEeCCc-eEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           32 AIAVLDG-SEGFKGTVSFYQEDGH-HTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        32 Avavl~g-~g~v~G~V~f~q~~~G-~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      |+|.+++ ++++.|.|+|+|..++ .+.|++++.||+||.|++||||+|||+.+++.....|+
T Consensus         1 a~a~l~~~~~~v~G~v~f~q~~~~~~~~v~~~~~GL~~g~~~~hIH~~g~~~~~~c~s~G~h~   63 (142)
T PF00080_consen    1 AVAVLKGAGGKVKGTVTFTQVSDGDGVQVTVSLNGLPPGQHGYHIHENGDCSSNNCSSAGGHY   63 (142)
T ss_dssp             EEEEEBETSSSEEEEEEEEEETTTTEEEEEEEEESSSSEEEEEEEESSSTCSTTTTGGG-SBC
T ss_pred             CEEEEeCCCCCeEEEEEEEEeCCCCCEEEEEEEECCCCCCceEEEEeccccccccccccceec
Confidence            6899984 5789999999999843 39999999999999999999999999554445556665

Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....

>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]

Probab=99.29  E-value=1.8e-12  Score=101.62  Aligned_cols=63  Identities=27%  Similarity=0.477  Sum_probs=52.5

Q ss_pred             EEEEEcCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCC--ccchhhhhcc
Q 048434           32 AIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATT--VGNILTHLTN   94 (110)
Q Consensus        32 Avavl~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~--~g~~~~~~~~   94 (110)
                      +++.+.+++.+.|.|+|.|....+++|.+++.||+||.||+||||+||.+++|  +|+.|--+..
T Consensus        84 t~a~~~~~~~v~GvvRf~qvt~ek~lid~tvdGlspG~h~~~Ihe~GDlsng~~StG~~ynpf~~  148 (247)
T KOG4656|consen   84 TVAKYTGPQAVQGVVRFVQVTEEKTLIDGTVDGLSPGLHGLHIHEYGDLSNGCESTGKHYNPFQE  148 (247)
T ss_pred             HHHHhcCCccceeEEEEEEeccccEEEEEEecCCCCcccceeEeeccccccchhhcccccCCCcC
Confidence            34455566789999999999877799999999999999999999999999986  6665544433

>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins

Probab=90.89  E-value=2.8  Score=28.52  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=31.5

Q ss_pred             CeEEEEEEEEeCCc-eEEEEEEecCCCCceeEEEEcC
Q 048434           41 GFKGTVSFYQEDGH-HTVITVNLANLKAGSHGFHVHE   76 (110)
Q Consensus        41 ~v~G~V~f~q~~~G-~v~I~~~l~GLpPG~HGfHIHe   76 (110)
                      .-.|.+.|.=.+++ .+..++.++||+...-+.|||+
T Consensus        19 ~a~G~a~~~l~~~~~~l~y~i~~~gl~~~~~~~hih~   55 (119)
T PF07452_consen   19 SASGTAWFTLDDDGNTLHYSITLSGLSSPPTAAHIHQ   55 (119)
T ss_pred             CCEEEEEEEEECCCCEEEEEEEEeCCCCCcEEEEEEc
Confidence            46899999999876 6899999999977778999998

This family includes bacterial homologues. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made [].

>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.42  E-value=1.3  Score=33.16  Aligned_cols=79  Identities=20%  Similarity=0.217  Sum_probs=46.1

Q ss_pred             CchhhhHHHHHHHHHHHHHhhhhcCCCCcceEEEEEcCCCCeEEEEEEEEeCC--c-----e-------EE-----EEEE
Q 048434            1 MEKAASLKLVALLAVLFCFVNIATNSRPHSKAIAVLDGSEGFKGTVSFYQEDG--H-----H-------TV-----ITVN   61 (110)
Q Consensus         1 ~~~~~~~~l~~~~~~l~~~~~~a~~~~~~~kAvavl~g~g~v~G~V~f~q~~~--G-----~-------v~-----I~~~   61 (110)
                      |-+.+.+++.++.+++......+.+++..-+-..+++|-.+-.|.|.|.-..+  |     +       +.     +...
T Consensus         1 m~~~~~~~l~Ll~aa~sL~~~~aaaaeatgkLTvti~glknkqGqic~aVf~s~qgfp~~~~~~f~ractsit~dpv~~~   80 (151)
T COG4704           1 MLNISRRRLFLLAAALSLVSLKAAAAEATGKLTVTINGLKNKQGQICFAVFASEQGFPMSDPSRFQRACTSITGDPVSKS   80 (151)
T ss_pred             CccHHHHHHHHHHHHHHHHhHHHHHHhhcCceEEEEcchhhccCcEEEEEEeccccCCCCCchHHhhhcccccCCchhhe
Confidence            66777788877777766666333333345556667776444456655543210  1     1       12     3457


Q ss_pred             ecCCCCceeEEEEc--CCCC
Q 048434           62 LANLKAGSHGFHVH--ESGF   79 (110)
Q Consensus        62 l~GLpPG~HGfHIH--e~GD   79 (110)
                      +.+|+||.+++-+-  ++||
T Consensus        81 f~~Lk~G~YAvaa~qD~nGd  100 (151)
T COG4704          81 FYGLKPGKYAVAAFQDENGD  100 (151)
T ss_pred             eecCCCccEEEEEEEecCCC
Confidence            78999998776653  4454

>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins

Probab=82.63  E-value=6.3  Score=26.99  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=29.4

Q ss_pred             CeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcC
Q 048434           41 GFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHE   76 (110)
Q Consensus        41 ~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe   76 (110)
                      ...|.+.|+-++++.+..++.+.||++-.-+.|||+
T Consensus        19 ~a~G~a~~~l~~~~~l~y~i~~~gl~~~~~~~hih~   54 (118)
T smart00754       19 GAVGGAWFTLDDDGSLHYQVTLSGLSGPETAAHIHE   54 (118)
T ss_pred             CcEEEEEEEECCCCEEEEEEEEcccCCCceeeeEec
Confidence            568999999886566888999999986434899997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	110
2q2l_A	152	Crystal Structure Of Superoxide Dismutase From P. A		6e-07
1srd_A	154	Three-Dimensional Structure Of Cu,Zn-Superoxide Dis		2e-06
3km1_A	154	Zinc-Reconstituted Tomato Chloroplast Superoxide Di		1e-05
1to4_A	156	Structure Of The Cytosolic Cu,Zn Sod From S. Manson		3e-05
3mnd_A	152	Crystallographic Analysis Of The Cystosolic CuZN SU		1e-04

>pdb|2Q2L|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Atrosanguina Length = 152

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          +K +AVL  SEG  GT+ F QE    T +T N++ LK G HGFHVH  G
Sbjct: 2  AKGVAVLSSSEGVAGTILFTQEGDGPTTVTGNISGLKPGLHGFHVHALG 50

>pdb|1SRD|A Chain A, Three-Dimensional Structure Of Cu,Zn-Superoxide Dismutase From Spinach At 2.0 Angstroms Resolution Length = 154

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
           KA+AVL G+   +G V+  QED   T + V ++ L  G HGFH+HE G
Sbjct: 3  KKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFG 51

>pdb|3KM1|A Chain A, Zinc-Reconstituted Tomato Chloroplast Superoxide Dismutase Length = 154

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
           KA+AVL G+   +G V+  Q+D   T + V +  L  G HGFH+HE G
Sbjct: 3  KKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYG 51

>pdb|1TO4|A Chain A, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni Length = 156

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTV-ITVNLANLKAGSHGFHVHESG 78
          KA+ V+ G+ G KG V F QE  +  V +    + LKAG HGFHVHE G
Sbjct: 5  KAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFG 53

>pdb|3MND|A Chain A, Crystallographic Analysis Of The Cystosolic CuZN SUPEROXIDE DISMUTASE From Taenia Solium Length = 152

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          KA+ V+ G EG KG V F Q  G    +      LK G HGFHVHE G
Sbjct: 2  KAVCVMRGEEGVKGVVHFTQA-GDAVKVHAEFEGLKPGKHGFHVHEFG 48

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
1do5_A	154	Human copper chaperone for superoxide dismutase do	4e-15
2q2l_A	152	Superoxide dismutase; SOD, SAD, antioxidant, oxido	5e-15
1xso_A	150	Copper,zinc superoxide dismutase; oxidoreductase (	1e-14
1to4_A	156	Superoxide dismutase; beta-barrel, oxidoreductase;	3e-14
3pu7_A	154	Superoxide dismutase [CU-ZN], chloroplastic; oxido	4e-14
2wyt_A	153	Superoxide dismutase [CU-ZN]; oxidoreductase, dise	1e-13
3f7l_A	152	Copper,zinc superoxide dismutase; oxidoreductase (	3e-13
3kbe_A	157	Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dis	5e-13
2e47_A	156	EA4, TIME interVal measuring enzyme TIME; motallop	9e-13
1f1g_A	154	Cuznsod, copper-zinc superoxide dismutase; nitric	2e-12
1xtm_B	175	Hypothetical superoxide dismutase-like protein YO;	2e-12
3ce1_A	168	Superoxide dismutase [CU-ZN]; greek-KEY beta barre	3e-12
3l9y_A	154	Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY	4e-12
1eso_A	154	SOD, Cu, Zn superoxide dismutase; oxidoreductase,	5e-10
2aqm_A	154	Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10	1e-09
1eqw_A	156	Cu,Zn superoxide dismutase; greek KEY B-barrel, ox	1e-09
1oal_A	151	Superoxide dismutase; oxidoreductase, prokaryotic	1e-09
1pzs_A	208	Superoxide dismutase [CU-ZN]; Cu-protein, beta cor	1e-09
1z9n_A	177	Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxid	2e-09
2aqp_A	164	Superoxide dismutase [CU-ZN]; electrostatic guidan	7e-09
2jlp_A	222	Extracellular superoxide dismutase (Cu-Zn); glycol	3e-08
1ej8_A	140	Lys7; beta barrel, copper chaperone for SOD, domai	7e-08
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	6e-04
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	8e-04

>1do5_A Human copper chaperone for superoxide dismutase domain II; beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1 Length = 154

 Score = 65.4 bits (160), Expect = 4e-15
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
            A+A+L G    +G V F Q      +I   +  L+ G HG HVH+ G
Sbjct: 4  GAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYG 52

>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase, metal-binding; 2.37A {Potentilla atrosanguinea} Length = 152

 Score = 65.4 bits (160), Expect = 5e-15
 Identities = 25/49 (51%), Positives = 31/49 (63%)

Query: 30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          +K +AVL  SEG  GT+ F QE    T +T N++ LK G HGFHVH  G
Sbjct: 2  AKGVAVLSSSEGVAGTILFTQEGDGPTTVTGNISGLKPGLHGFHVHALG 50

>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1 Length = 150

 Score = 64.3 bits (157), Expect = 1e-14
 Identities = 20/48 (41%), Positives = 25/48 (52%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          KA+ VL GS   KG V F Q+D     +   +  L  G HGFH+H  G
Sbjct: 2  KAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFG 49

>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A Length = 156

 Score = 63.5 bits (155), Expect = 3e-14
 Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 31 KAIAVLDGSEGFKGTVSFYQE-DGHHTVITVNLANLKAGSHGFHVHESG 78
          KA+ V+ G+ G KG V F QE D     +    + LKAG HGFHVHE G
Sbjct: 5  KAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFG 53

>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase, antioxidant, metal-binding, DIS bond, transit peptide; 1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A 3hog_A 1srd_A Length = 154

 Score = 63.1 bits (154), Expect = 4e-14
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
           KA+AVL G+   +G V+  Q+D   T + V +  L  G HGFH+HE G
Sbjct: 3  KKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYG 51

>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation, amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A {Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A 1uxl_A ... Length = 153

 Score = 61.6 bits (150), Expect = 1e-13
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 30 SKAIAVLDGSEGFKGTVSFYQ-EDGHHTVITVNLANLKAGSHGFHVHESG 78
          +KA+ VL G    +G ++F Q E      +  ++  +  G HGFHVHE G
Sbjct: 2  TKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGVTEGLHGFHVHEFG 51

>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor), greek KEY beta-barrel, amyloid filaments, ALS, FALS; 0.99A {Alvinella pompejana} PDB: 3f7k_A Length = 152

 Score = 60.8 bits (148), Expect = 3e-13
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
           A+ VL G     GT+   +E      +T  +  L  G HGFHVHE G
Sbjct: 3  HAVCVLKGDSPVTGTIHLKEEGDM-VTVTGEITGLTPGKHGFHVHEFG 49

>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} PDB: 3kbf_A Length = 157

 Score = 60.4 bits (147), Expect = 5e-13
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 30 SKAIAVLDGSEGFKGTVSFYQE-DGHHTVITVNLANLKAGSHGFHVHESG 78
          ++A+AVL G     GT+   Q+ +    VI   +  L  G HGFHVH+ G
Sbjct: 2  NRAVAVLRGETV-TGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYG 50

>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein, glycoprotein, metal binding protein; HET: NAG MAN; 2.11A {Bombyx mori} PDB: 2e46_A Length = 156

 Score = 59.7 bits (145), Expect = 9e-13
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          S+AIAVL      +G ++F Q       +   +  L  G +GFHVHE G
Sbjct: 8  SRAIAVLSTE-TIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKG 55

>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A Length = 154

 Score = 58.5 bits (142), Expect = 2e-12
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 31 KAIAVLDGSEGFKGTVSFYQE-DGHHTVITVNLANLKA-GSHGFHVHESG 78
          +A+AVL G  G  G V F Q  +   T ++  +A        GFH+HE G
Sbjct: 3  QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFG 52

>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, STRU genomics, unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A Length = 175

 Score = 58.9 bits (143), Expect = 2e-12
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 23 ATNSRPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSH-GFHVHESG 78
             +      + +++      G +   + D     I ++  +L+ G+  GFH+HE G
Sbjct: 14 VVETSAFGHHVQLVNREGKAVGFIEIKESDDEGLDIHISANSLRPGASLGFHIHEKG 70

>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant, copper, metal-binding, oxidoreductase, zinc; 1.20A {Cryptococcus liquefaciens} Length = 168

 Score = 58.2 bits (141), Expect = 3e-12
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 31 KAIAVLDGSEGFKGTVSFYQE-DGHHTVITVNLANLKA-GSHGFHVHESG 78
          KAIAVL G    +G ++F QE  G    ++  + N+ A    GFHVH+ G
Sbjct: 6  KAIAVLKGDSPVQGVITFTQESSGGPVTVSGEIKNMDANAQRGFHVHQFG 55

>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel, antioxidant, copper, cytoplasm, metal- binding, oxidoreductase; 1.80A {Bombyx mori} PDB: 3l9e_A Length = 154

 Score = 57.8 bits (140), Expect = 4e-12
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 31 KAIAVLDGSEGFKGTVSFYQE-DGHHTVITVNLANLKAGSHGFHVHESG 78
          KA+ VL G     GTV F Q+ +    V++  +  L  G HGFHVHE G
Sbjct: 4  KAVCVLRGDV--SGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFG 50

>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A Length = 154

 Score = 52.3 bits (126), Expect = 5e-10
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
             +    G     G+V+  + D      + +L  L  G HGFH+H  G
Sbjct: 6  EMNLVTSQGVGQSIGSVTITETDKG-LEFSPDLKALPPGEHGFHIHAKG 53

>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus} Length = 154

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 34 AVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          A+  G     GTV   +  G      VN+  L  G HGFHVHE+ 
Sbjct: 10 ALPTGPGKEVGTVVISEAPGG-LHFKVNMEKLTPGYHGFHVHENP 53

>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A* Length = 156

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 34 AVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          A+  G+    G ++  +      + T +L  L  G HGFHVH + 
Sbjct: 10 ALSSGTGENIGEITVSETPYG-LLFTPHLNGLTPGIHGFHVHTNP 53

>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu, protein-subunit interaction recognition, protein electrostatic; 1.5A {Photobacterium leiognathi} SCOP: b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A 1ibb_A 1ibf_A Length = 151

 Score = 51.1 bits (123), Expect = 1e-09
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          K   +  G     GT+   Q      V    LA+L  G HGFH+H++G
Sbjct: 6  KMTDLQTGKP--VGTIELSQNKYG-VVFIPELADLTPGEHGFHIHQNG 50

>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant, metal binding, greek KEY barrel, oxidoreductase; 1.63A {Mycobacterium tuberculosis} SCOP: b.1.8.1 Length = 208

 Score = 52.2 bits (125), Expect = 1e-09
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 31 KAIAVLDGSEG-FKGTVSFYQEDG--HHTVITVNLANLKAGSHGFHVHESG 78
             + L   +G    T  F   +G    T+ T  +  L  G HG H+H+ G
Sbjct: 39 SLTSTLTAPDGTKVATAKFEFANGYATVTIATTGVGKLTPGFHGLHIHQVG 89

>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET: HEM; 1.50A {Haemophilus ducreyi} Length = 177

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 23 ATNSRPHSKAIAVL--DGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
            +       +  L         GTV   +      V T  L +L  G HGFH+HE  
Sbjct: 19 MMSMEKIVVPVQQLDPQNGNKDVGTVEITESAYG-LVFTPKLHDLAHGLHGFHIHEKP 75

>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB: 2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A Length = 164

 Score = 49.7 bits (119), Expect = 7e-09
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 23 ATNSRPHSKAIAVLD--GSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
                    +  LD        GTV+  + +    V T +L  L AG HGFH+HE+ 
Sbjct: 6  IPKGASIEVKVQQLDPVNGNKDVGTVTITESNYG-LVFTPDLQGLSAGLHGFHIHENP 62

>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-BIND oxidative stress, antioxidant; 1.70A {Homo sapiens} Length = 222

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 6/54 (11%)

Query: 31  KAIAVLDGSEG-FKGTVSFYQE-DGHHTVITVNL----ANLKAGSHGFHVHESG 78
           +  A LD ++    G V F Q            L        + S   HVH+ G
Sbjct: 48  QPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFG 101

>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A {Saccharomyces cerevisiae} SCOP: b.1.8.1 Length = 140

 Score = 46.4 bits (110), Expect = 7e-08
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 29 HSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANL-KAGSHGFHVHESG 78
            K           +G     Q   + T+  + +  + +AG++   +HE G
Sbjct: 10 FQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASIHEKG 60

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 28/51 (54%)

Query: 2  EK------AASLKLVALLAVLFCFVNIATNSRPHSKAIAVLDGSEGFKGTV 46
          EK       ASLKL             A +S P   A+A+       K T+
Sbjct: 18 EKQALKKLQASLKLY------------ADDSAP---ALAI-------KATM 46

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 27  RPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKA-GSHGFHVHESG 78
               K           +G     Q   + T+  + +  +   G++   +HE G
Sbjct: 84  ETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASIHEKG 136

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249

 Score = 36.3 bits (83), Expect = 8e-04
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 24  TNSRPHSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNL-ANLKAGSHGFHVHESG 78
                  K           +G     Q   + T+  + +    +AG++   +HE G
Sbjct: 82  AILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASIHEKG 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
3pu7_A	154	Superoxide dismutase [CU-ZN], chloroplastic; oxido	99.79
3f7l_A	152	Copper,zinc superoxide dismutase; oxidoreductase (	99.78
4a7u_A	153	Superoxide dismutase [CU-ZN]; oxidoreductase, amyo	99.78
2q2l_A	152	Superoxide dismutase; SOD, SAD, antioxidant, oxido	99.78
1xso_A	150	Copper,zinc superoxide dismutase; oxidoreductase (	99.77
1ej8_A	140	Lys7; beta barrel, copper chaperone for SOD, domai	99.75
1to4_A	156	Superoxide dismutase; beta-barrel, oxidoreductase;	99.75
3l9y_A	154	Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY	99.75
2wyt_A	153	Superoxide dismutase [CU-ZN]; oxidoreductase, dise	99.75
3kbe_A	157	Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dis	99.75
1f1g_A	154	Cuznsod, copper-zinc superoxide dismutase; nitric	99.75
1do5_A	154	Human copper chaperone for superoxide dismutase do	99.75
3ce1_A	168	Superoxide dismutase [CU-ZN]; greek-KEY beta barre	99.73
2e47_A	156	EA4, TIME interVal measuring enzyme TIME; motallop	99.71
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	99.7
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	99.67
1z9n_A	177	Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxid	99.66
1oal_A	151	Superoxide dismutase; oxidoreductase, prokaryotic	99.63
2aqp_A	164	Superoxide dismutase [CU-ZN]; electrostatic guidan	99.63
2aqm_A	154	Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10	99.62
1eqw_A	156	Cu,Zn superoxide dismutase; greek KEY B-barrel, ox	99.62
1eso_A	154	SOD, Cu, Zn superoxide dismutase; oxidoreductase,	99.62
1pzs_A	208	Superoxide dismutase [CU-ZN]; Cu-protein, beta cor	99.62
1xtm_B	175	Hypothetical superoxide dismutase-like protein YO;	99.62
2jlp_A	222	Extracellular superoxide dismutase (Cu-Zn); glycol	99.59

>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase, antioxidant, metal-binding, DIS bond, transit peptide; 1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A 3hog_A 3s0p_A 1srd_A

Probab=99.79  E-value=1.7e-19  Score=132.36  Aligned_cols=63  Identities=35%  Similarity=0.586  Sum_probs=56.2

Q ss_pred             cceEEEEEcCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           29 HSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        29 ~~kAvavl~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      +.+|+|++++++++.|+|+|+|.+++.++|+++++|||||+|||||||+|||+++|.+. ..||
T Consensus         2 ~~~Avavl~g~~~V~G~v~f~q~~~g~v~v~~~i~GL~pG~hgfHIHe~Gd~s~gc~Sa-GgHf   64 (154)
T 3pu7_A            2 TKKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMST-GAHF   64 (154)
T ss_dssp             EEEEEEEEBCSSSCEEEEEEEEETTSCEEEEEEEESCCSEEEEEEEESCCCCTTGGGGG-CSBC
T ss_pred             CceEEEEECCCCCCEEEEEEEEeCCCcEEEEEEEECCCCCcccEEEeecCCCCCCcccc-cccc
Confidence            47899999998899999999999877799999999999999999999999999986443 5555

>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor), greek KEY beta-barrel, amyloid filaments, ALS, FALS; 0.99A {Alvinella pompejana} SCOP: b.1.8.1 PDB: 3f7k_A

Probab=99.78  E-value=4.2e-19  Score=129.90  Aligned_cols=61  Identities=31%  Similarity=0.484  Sum_probs=54.2

Q ss_pred             ceEEEEEcCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        30 ~kAvavl~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      .+|+|++++++++.|+|+|+|.++ .++|+++++|||||+|||||||+|||+++|.+. ..||
T Consensus         2 ~~Avavl~g~~~v~G~v~f~q~~~-~v~v~~~l~GL~pG~hgfHIHe~Gd~s~gc~Sa-GgHf   62 (152)
T 3f7l_A            2 IHAVCVLKGDSPVTGTIHLKEEGD-MVTVTGEITGLTPGKHGFHVHEFGDNTNGCTSA-GGHF   62 (152)
T ss_dssp             CEEEEEEBCSSSCEEEEEEEEETT-EEEEEEEEESCCSEEEEEEEESCCCCTTTTGGG-CSBC
T ss_pred             eEEEEEEcCCCCcEEEEEEEEcCC-cEEEEEEEECCCCCcccEEEeecCcCCCCcccc-cccc
Confidence            689999999889999999999955 499999999999999999999999999986443 5555

>4a7u_A Superoxide dismutase [CU-ZN]; oxidoreductase, amyotrophic lateral sclerosis, antioxidant, mutation, metal-binding, Zn superoxide dismutase; HET: ALE; 0.98A {Homo sapiens} PDB: 3ecv_A 1uxl_A* 4a7g_F* 4a7q_A* 4a7t_A* 4a7s_A* 4a7v_A* 4b3e_A 4a7g_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A ...

Probab=99.78  E-value=4.3e-19  Score=129.90  Aligned_cols=62  Identities=32%  Similarity=0.485  Sum_probs=55.0

Q ss_pred             ceEEEEEcCCCCeEEEEEEEEeCC-ceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           30 SKAIAVLDGSEGFKGTVSFYQEDG-HHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        30 ~kAvavl~g~g~v~G~V~f~q~~~-G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      .+|+|++++++++.|+|+|+|.++ +.++|+++++|||||+|||||||+|||+++|.+. ..||
T Consensus         2 ~~Avavl~g~~~v~G~v~f~q~~~~~~v~v~~~i~GL~pG~hg~HIHe~Gd~s~gc~Sa-GgHf   64 (153)
T 4a7u_A            2 TKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA-GPHF   64 (153)
T ss_dssp             EEEEEEEBCSSSCEEEEEEEESSTTCCEEEEEEEESCCSEEEEEEEESCCCCTTSGGGG-CSBC
T ss_pred             cEEEEEEcCCCccEEEEEEEEeCCCCcEEEEEEEECCCCCcccEEEeecCccccccccc-cCee
Confidence            589999999889999999999985 4699999999999999999999999999986443 5555

>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase, metal-binding; 2.37A {Potentilla atrosanguinea}

Probab=99.78  E-value=3.9e-19  Score=130.07  Aligned_cols=63  Identities=41%  Similarity=0.593  Sum_probs=55.7

Q ss_pred             cceEEEEEcCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           29 HSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        29 ~~kAvavl~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      +.+|+|+++++++++|+|+|+|.+++.++|+++++|||||.|||||||+|||+++|.+. ..||
T Consensus         1 ~~~Ava~l~g~~~v~G~v~f~q~~~g~v~v~~~i~GL~pG~hg~HIHe~Gd~~~gc~Sa-G~Hf   63 (152)
T 2q2l_A            1 MAKGVAVLSSSEGVAGTILFTQEGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMST-GPHF   63 (152)
T ss_dssp             CEEEEEECBCSSSCEEEEEEEESTTSCEEEEEEEESCCSEEEEEEEESCCCCTTGGGGG-CSBC
T ss_pred             CceEEEEEeCCCccEEEEEEEEcCCCcEEEEEEECCCCCcceeEEEeecCccCCCcccc-cCcc
Confidence            36899999998899999999998777799999999999999999999999999976443 5555

>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1

Probab=99.77  E-value=1e-18  Score=127.49  Aligned_cols=62  Identities=34%  Similarity=0.495  Sum_probs=54.4

Q ss_pred             ceEEEEEcCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        30 ~kAvavl~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      .+|+|+++++++++|+|+|+|.+++.+.|+++++|||||+|||||||+|||+++|.+. ..||
T Consensus         1 ~~Ava~l~~~~~v~G~v~f~q~~~~~v~v~~~i~GL~pG~hg~HIHe~Gd~s~gc~sa-G~Hf   62 (150)
T 1xso_A            1 VKAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSA-GSHF   62 (150)
T ss_dssp             CEEEEEEBCSSSCEEEEEEEESTTSCEEEEEEEESCCSEEEEEEEESCCCCTTGGGGG-CSBC
T ss_pred             CEEEEEEcCCCccEEEEEEEEcCCCcEEEEEEECCCCCCceeEEEecCCCCCCCcccc-cCcc
Confidence            4799999998899999999998766699999999999999999999999999976443 5555

>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A {Saccharomyces cerevisiae} SCOP: b.1.8.1

Probab=99.75  E-value=1.3e-18  Score=126.20  Aligned_cols=61  Identities=18%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             eEEEEEcCC----------CCeEEEEEEEEeCCceEEEEEEecCCC-CceeEEEEcCCCCCCCCCccchhhhh
Q 048434           31 KAIAVLDGS----------EGFKGTVSFYQEDGHHTVITVNLANLK-AGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        31 kAvavl~g~----------g~v~G~V~f~q~~~G~v~I~~~l~GLp-PG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      +|+|++++.          +++.|+|+|+|..++.+.|+++++||| ||+|||||||+|||+++|.+. ..||
T Consensus         2 aAV~vl~~~~~~~~~~~~~~~v~G~v~f~q~~~~~v~i~~~l~GL~~pG~HGfHIHe~Gd~s~g~~Sa-G~Hf   73 (140)
T 1ej8_A            2 SAVAILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASIHEKGDVSKGVEST-GKVW   73 (140)
T ss_dssp             EEEEEEECCSCCTTCCCCSCCEEEEEEEEEEETTEEEEEEEEEEESSCEEEEEEEESCCCCTTGGGGS-CSEE
T ss_pred             cEEEEEccCCcccccccCCCCcEEEEEEEEeCCCCEEEEEEEECCCCCCeeEEEEcCCCCCCCCcccc-cCcc
Confidence            589999875          579999999997434499999999999 999999999999999987544 5665

>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A

Probab=99.75  E-value=3e-18  Score=125.87  Aligned_cols=63  Identities=38%  Similarity=0.602  Sum_probs=55.2

Q ss_pred             cceEEEEEcCCCCeEEEEEEEEeC-CceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           29 HSKAIAVLDGSEGFKGTVSFYQED-GHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        29 ~~kAvavl~g~g~v~G~V~f~q~~-~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      +.+|+|+++++++++|+|+|+|.. ++.+.|+++++|||||+|||||||+|||+++|.+. ..||
T Consensus         3 ~~~Ava~l~~~~~v~G~v~f~q~~~~~~v~v~~~l~GL~pG~hg~HIHe~Gd~s~gc~Sa-G~Hf   66 (156)
T 1to4_A            3 NMKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSA-GAHF   66 (156)
T ss_dssp             CCEEEEEEBCSSSCEEEEEEEESSTTSCEEEEEEEESCCSEEEEEEEESCCCCTTTTGGG-CSBC
T ss_pred             ceEEEEEEeCCCccEEEEEEEEeCCCCCEEEEEEECCCCCCcEeEEEecCCCCCCChhhc-cCcC
Confidence            578999999988999999999975 45699999999999999999999999999986443 5555

>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel, antioxidant, copper, cytoplasm, metal- binding, oxidoreductase; 1.80A {Bombyx mori} SCOP: b.1.8.1 PDB: 3l9e_A

Probab=99.75  E-value=1.7e-18  Score=126.82  Aligned_cols=61  Identities=38%  Similarity=0.546  Sum_probs=53.3

Q ss_pred             cceEEEEEcCCCCeEEEEEEEEeCC-ceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           29 HSKAIAVLDGSEGFKGTVSFYQEDG-HHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        29 ~~kAvavl~g~g~v~G~V~f~q~~~-G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      +.+|+|+++|+  +.|+|+|+|.++ +.++|+++++|||||+|||||||+|||+++|.+. ..||
T Consensus         2 ~~~Ava~l~G~--v~G~v~f~q~~~~~~v~v~~~l~GL~pG~hg~HIHe~Gd~s~gc~Sa-GgHf   63 (154)
T 3l9y_A            2 PAKAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA-GAHF   63 (154)
T ss_dssp             CEEEEEEEEES--SEEEEEEEESSTTSCEEEEEEEESCCSEEEEEEEESCCCCTTGGGGG-CSBC
T ss_pred             CeEEEEEEcCC--CEEEEEEEEeCCCCcEEEEEEEECCCCCCccEEEEecCcCCCCcccc-cccc
Confidence            57999999975  999999999973 4599999999999999999999999999986443 5565

>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation, amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A {Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A 1uxl_A ...

Probab=99.75  E-value=2.6e-18  Score=125.85  Aligned_cols=62  Identities=31%  Similarity=0.474  Sum_probs=54.4

Q ss_pred             ceEEEEEcCCCCeEEEEEEEEeCC-ceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           30 SKAIAVLDGSEGFKGTVSFYQEDG-HHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        30 ~kAvavl~g~g~v~G~V~f~q~~~-G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      .+|+|+++++++++|+|+|+|.++ +.+.|+++++|||||+|||||||+|||+++|.+. ..||
T Consensus         2 ~~Ava~l~~~~~v~G~v~f~q~~~g~~v~v~~~i~GL~pG~hg~HIHe~gd~~~~c~Sa-G~Hf   64 (153)
T 2wyt_A            2 TKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGVTEGLHGFHVHEFGDNTAGCTSA-GPHF   64 (153)
T ss_dssp             EEEEEEEBCSSSCEEEEEEEECSTTCCEEEEEEEESCCSEEEEEEEESCCCCTTGGGGG-CSBC
T ss_pred             eEEEEEEcCCCceEEEEEEEEcCCCCcEEEEEEECCCCCcceeEEEecCCcCCCCcccc-cCcc
Confidence            679999998889999999999975 4699999999999999999999999999976443 5555

>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} SCOP: b.1.8.1 PDB: 3kbf_A

Probab=99.75  E-value=2e-18  Score=126.99  Aligned_cols=62  Identities=32%  Similarity=0.509  Sum_probs=54.1

Q ss_pred             cceEEEEEcCCCCeEEEEEEEEeCC-ceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           29 HSKAIAVLDGSEGFKGTVSFYQEDG-HHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        29 ~~kAvavl~g~g~v~G~V~f~q~~~-G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      +.+|+|+++|+ +++|+|+|+|.++ +.++|+++++|||||+|||||||+|||+++|.+. ..||
T Consensus         1 p~~Avavl~g~-~V~G~v~f~q~~~g~~v~v~~~l~GL~pG~hgfHIHe~Gd~s~gc~Sa-GgHf   63 (157)
T 3kbe_A            1 SNRAVAVLRGE-TVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA-GPHF   63 (157)
T ss_dssp             CCEEEEEEBCS-SCEEEEEEECSSTTSCCEEEEEEESCCSSCEEEEEESCCCCTTTTGGG-CSBC
T ss_pred             CeEEEEEEeCC-CEEEEEEEEEeCCCCeEEEEEEEECCCCCcccEEEeecCccCcccccc-cccc
Confidence            47999999986 5999999999974 4599999999999999999999999999987543 5565

>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A

Probab=99.75  E-value=3e-18  Score=125.51  Aligned_cols=63  Identities=32%  Similarity=0.495  Sum_probs=54.3

Q ss_pred             cceEEEEEcCCCCeEEEEEEEEeC-CceEEEEEEecCCCC-ceeEEEEcCCCCCCCCCccchhhhh
Q 048434           29 HSKAIAVLDGSEGFKGTVSFYQED-GHHTVITVNLANLKA-GSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        29 ~~kAvavl~g~g~v~G~V~f~q~~-~G~v~I~~~l~GLpP-G~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      +.+|+|+++++++++|+|+|+|.+ ++.+.|+++++|||| |.|||||||+|||+++|.+. ..||
T Consensus         1 ~~~Ava~l~g~~~v~G~v~f~q~~~~~~v~v~~~i~GL~p~G~hg~HIHe~Gd~s~gc~Sa-G~Hf   65 (154)
T 1f1g_A            1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA-GPHF   65 (154)
T ss_dssp             -CEEEEEEBCSSSCEEEEEEECSSTTSCEEEEEEEESCCSSCEEEEEEESCCCCTTTTGGG-CSBC
T ss_pred             CeEEEEEEcCCCccEEEEEEEEeCCCCCEEEEEEEeeCCCCCeEeEEEecCCCCCCChhhc-cCcc
Confidence            368999999988999999999974 456999999999999 99999999999999986443 5555

>1do5_A Human copper chaperone for superoxide dismutase domain II; beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1

Probab=99.75  E-value=2.8e-18  Score=125.87  Aligned_cols=63  Identities=29%  Similarity=0.456  Sum_probs=54.0

Q ss_pred             cceEEEEEcCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           29 HSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        29 ~~kAvavl~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      ..+|+|++++++++.|+|+|+|..++.+.|+++++|||||.|||||||+|||+++|.+. ..||
T Consensus         3 ~~~ava~l~~~~~v~G~v~f~q~~~~~v~v~~~i~GL~pG~hg~HIHe~Gd~s~~c~Sa-G~Hf   65 (154)
T 1do5_A            3 LGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSC-GNHF   65 (154)
T ss_dssp             CEEEEEEEBCSSSCEEEEEEEEEETTEEEEEEEEESCCSEEEEEEEESCCCCTTGGGTT-CSBC
T ss_pred             cceEEEEEcCCCCcEEEEEEEEecCCCEEEEEEEECCCCCceeEEEeecCCCCCCcccC-cCcc
Confidence            47899999998889999999995434599999999999999999999999999976433 4554

>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant, copper, metal-binding, oxidoreductase, zinc; 1.20A {Cryptococcus liquefaciens}

Probab=99.73  E-value=9.9e-18  Score=124.61  Aligned_cols=64  Identities=33%  Similarity=0.506  Sum_probs=53.3

Q ss_pred             CcceEEEEEcCCCCeEEEEEEEEeC-CceEEEEEEecCCCC-ceeEEEEcCCCCCCCCCccchhhhh
Q 048434           28 PHSKAIAVLDGSEGFKGTVSFYQED-GHHTVITVNLANLKA-GSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        28 ~~~kAvavl~g~g~v~G~V~f~q~~-~G~v~I~~~l~GLpP-G~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      .+.+|+|+++++++++|+|+|+|.+ ++.+.|+++++|||| |.|||||||+|||+++|.+. ..||
T Consensus         3 ~~~~Ava~l~g~~~v~G~v~f~q~~~~~~v~v~~~i~GL~p~G~hg~HIHe~Gd~s~gc~Sa-GgHf   68 (168)
T 3ce1_A            3 STIKAIAVLKGDSPVQGVITFTQESSGGPVTVSGEIKNMDANAQRGFHVHQFGDNSNGCTSA-GPHF   68 (168)
T ss_dssp             --CEEEEEEBCSSSCEEEEEEEEC---CCEEEEEEEESCCTTCEEEEEEESCCCCTTGGGGG-CSBC
T ss_pred             CccEEEEEEcCCCccEEEEEEEEeCCCCCEEEEEEEeeCCCCCeeeEEEecCCcCCCChhhc-cCcc
Confidence            3578999999988999999999974 456999999999999 99999999999999976433 4554

>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein, glycoprotein, metal binding protein; HET: NAG MAN; 2.11A {Bombyx mori} PDB: 2e46_A

Probab=99.71  E-value=1.7e-17  Score=121.96  Aligned_cols=62  Identities=29%  Similarity=0.498  Sum_probs=53.6

Q ss_pred             CcceEEEEEcCCCCeEEEEEEEEeCC-ceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           28 PHSKAIAVLDGSEGFKGTVSFYQEDG-HHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        28 ~~~kAvavl~g~g~v~G~V~f~q~~~-G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      ++.+|+|+++++ +++|+|+| |.++ +.+.|+++++|||||+|||||||+|||+++|.+. ..||
T Consensus         6 ~~~~Ava~l~~~-~v~G~v~f-q~~~g~~v~v~~~i~GL~pG~hg~HIHe~Gd~s~~c~Sa-GgHf   68 (156)
T 2e47_A            6 TPSRAIAVLSTE-TIRGNITF-TQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLST-GSHF   68 (156)
T ss_dssp             CCCEEEEEEECS-SCEEEEEE-EECGGGCEEEEEEEESSCSEEEEEEEESCCCCTTGGGGG-CSBC
T ss_pred             cccEEEEEEeCC-CeEEEEEE-EeCCCCcEEEEEEEEeCCCCcEEEEEeCCCcCCCChhhc-cCcc
Confidence            568999999987 89999999 8875 4699999999999999999999999999976443 5555

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=99.70  E-value=2.4e-17  Score=125.74  Aligned_cols=63  Identities=19%  Similarity=0.275  Sum_probs=53.5

Q ss_pred             cceEEEEEcCC----------CCeEEEEEEEEeCCceEEEEEEecCCC-CceeEEEEcCCCCCCCCCccchhhhh
Q 048434           29 HSKAIAVLDGS----------EGFKGTVSFYQEDGHHTVITVNLANLK-AGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        29 ~~kAvavl~g~----------g~v~G~V~f~q~~~G~v~I~~~l~GLp-PG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      ..+|+|++++.          +++.|+|+|+|..++.+.|+++++||| ||.|||||||+|||+++|.+. .+||
T Consensus        76 ~~~av~~l~~~~~~~~~~~~~~~v~G~v~~~q~~~~~~~v~~~i~GL~~~g~hg~hiHe~Gd~~~g~~sa-G~h~  149 (222)
T 1qup_A           76 NSSAVAILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASIHEKGDVSKGVEST-GKVW  149 (222)
T ss_dssp             TCEEEEEEECCSCCSSCCCCSCCEEEEEEEEECSSSCEEEEEEEEEESSCEEEEEEEESCCCCTTGGGGG-CSEE
T ss_pred             cceeeEEeccccccccccccCCCceEEEEEEEecCCCEEEEEEEeCCCCCCcEeEEEcCCCCCCCCcccc-cCCc
Confidence            35899999874          579999999997433499999999999 999999999999999986544 5665

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=99.67  E-value=8e-17  Score=125.08  Aligned_cols=62  Identities=19%  Similarity=0.273  Sum_probs=52.8

Q ss_pred             ceEEEEEcCC----------CCeEEEEEEEEeCCceEEEEEEecCCC-CceeEEEEcCCCCCCCCCccchhhhh
Q 048434           30 SKAIAVLDGS----------EGFKGTVSFYQEDGHHTVITVNLANLK-AGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        30 ~kAvavl~g~----------g~v~G~V~f~q~~~G~v~I~~~l~GLp-PG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      .+|+|++++.          +++.|+|+|+|..++.+.|+++++||| ||.|||||||+|||++++.+. .+||
T Consensus        78 ~~Av~~l~~~~~~~~~~~~~~~v~G~v~f~q~~~~~~~v~~~~~GL~~~g~hg~hiHe~Gd~~~g~~sa-G~h~  150 (249)
T 1jk9_B           78 SSAVAILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASIHEKGDVSKGVEST-GKVW  150 (249)
T ss_dssp             SEEEEEEEESSCCTTSCTTCCSEEEEEEEEEEETTEEEEEEEEEEESSCEEEEEEEESCCCCTTGGGGG-CSEE
T ss_pred             ceeEEEeccccccccccccCCCcEEEEEEEEcCCCCEEEEEEEeCCCCCCcEeEEEEeCCCCCCCcccc-cCCc
Confidence            5899999864          579999999997434499999999999 999999999999999986544 5665

>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET: HEM; 1.50A {Haemophilus ducreyi}

Probab=99.66  E-value=1.6e-16  Score=118.95  Aligned_cols=54  Identities=26%  Similarity=0.255  Sum_probs=47.3

Q ss_pred             cceEEEEEc---CCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCC
Q 048434           29 HSKAIAVLD---GSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRAT   83 (110)
Q Consensus        29 ~~kAvavl~---g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g   83 (110)
                      ..++.+.+.   ++++++|+|+|+|.++| ++|+++++|||||+|||||||+|||+++
T Consensus        24 ~~~~~~~l~~~~g~~~v~G~v~f~q~~~g-v~v~~~l~GL~pG~HGfHIHe~Gdcs~g   80 (177)
T 1z9n_A           24 KIVVPVQQLDPQNGNKDVGTVEITESAYG-LVFTPKLHDLAHGLHGFHIHEKPSCEPK   80 (177)
T ss_dssp             CEEEEEEECCTTTCCEEEEEEEEEEETTE-EEEEEEECSCCSEEECEEEESSSCCCCE
T ss_pred             cceEEEEEecCCCCCccEEEEEEEEcCCc-EEEEEEEeCCCCCceeEEEecCCccccc
Confidence            455666665   34789999999999887 9999999999999999999999999975

>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu, protein-subunit interaction recognition, protein electrostatic; 1.5A {Photobacterium leiognathi} SCOP: b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A 1ibb_A 1ibf_A

Probab=99.63  E-value=5.3e-16  Score=113.41  Aligned_cols=45  Identities=31%  Similarity=0.519  Sum_probs=42.0

Q ss_pred             CCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCC
Q 048434           39 SEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATT   84 (110)
Q Consensus        39 ~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~   84 (110)
                      +++++|+|+|+|.+++ ++|+++++|||||+|||||||+|||+++|
T Consensus        12 ~~~v~G~v~f~q~~~g-v~v~~~l~GL~pG~hGfHIHe~Gd~~~g~   56 (151)
T 1oal_A           12 TGKPVGTIELSQNKYG-VVFIPELADLTPGEHGFHIHQNGSCASSE   56 (151)
T ss_dssp             TCCEEEEEEEEEETTE-EEEEEEECSCCSEEECEEEESSSCCCCEE
T ss_pred             CCCeEEEEEEEEcCCc-EEEEEEEECCCCCcceEEEccCCcCCCcc
Confidence            5789999999999887 99999999999999999999999999853

>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB: 2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A

Probab=99.63  E-value=2.8e-16  Score=116.21  Aligned_cols=53  Identities=28%  Similarity=0.330  Sum_probs=45.4

Q ss_pred             ceEEEEEc---CCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCC
Q 048434           30 SKAIAVLD---GSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRAT   83 (110)
Q Consensus        30 ~kAvavl~---g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g   83 (110)
                      .++.+.+.   ++++++|+|+|+|.+++ ++|+++++|||||+|||||||+|||+++
T Consensus        12 ~~~~~~~~~~~g~~~v~G~v~f~q~~~g-v~v~~~l~GL~pG~HGfHIHe~Gdc~~g   67 (164)
T 2aqp_A           12 IEVKVQQLDPVNGNKDVGTVTITESNYG-LVFTPDLQGLSAGLHGFHIHENPSCEPK   67 (164)
T ss_dssp             EEEEEEECCTTTCCEEEEEEEEEEETTE-EEEEEEECSCCSEEECEEEESSSCCCCE
T ss_pred             ceEEEEEecCCCCCceEEEEEEEEcCCc-EEEEEEEeCCCCCceeEEEecCCcccCc
Confidence            34445443   44689999999999887 9999999999999999999999999975

>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus}

Probab=99.62  E-value=3e-16  Score=115.03  Aligned_cols=47  Identities=34%  Similarity=0.461  Sum_probs=43.2

Q ss_pred             CCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCCc
Q 048434           38 GSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTV   85 (110)
Q Consensus        38 g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~   85 (110)
                      ++++++|+|+|+|.+++ ++|+++++|||||+|||||||+|||+++|.
T Consensus        14 ~~~~v~G~v~f~q~~~g-v~v~~~l~GL~pG~hGfHIHe~Gdc~~gc~   60 (154)
T 2aqm_A           14 GPGKEVGTVVISEAPGG-LHFKVNMEKLTPGYHGFHVHENPSCAPGEK   60 (154)
T ss_dssp             EEEEEEEEEEEECCTTS-EEEEEEECSCCSEEECEEEESSSCCCCEEE
T ss_pred             CCCceEEEEEEEEcCCC-EEEEEEEECCCCCcceEEEccCCccCCccc
Confidence            45789999999999888 999999999999999999999999998654

>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A*

Probab=99.62  E-value=4.7e-16  Score=114.13  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=41.2

Q ss_pred             CCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCC
Q 048434           39 SEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRAT   83 (110)
Q Consensus        39 ~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g   83 (110)
                      +++++|+|+|+|.+++ +.|+++++|||||+|||||||+|||+++
T Consensus        15 ~~~v~G~v~f~q~~~g-v~v~~~l~GL~pG~hGfHIHe~Gd~~~g   58 (156)
T 1eqw_A           15 TGENIGEITVSETPYG-LLFTPHLNGLTPGIHGFHVHTNPSCMPG   58 (156)
T ss_dssp             EEEEEEEEEEEEETTE-EEEEEEECSCCSEEECEEEESSSCCCCE
T ss_pred             CCceEEEEEEEEcCCc-EEEEEEEeCCCCCceeEEECCCCcCCCc
Confidence            3689999999999887 9999999999999999999999999975

>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A

Probab=99.62  E-value=5.8e-16  Score=113.43  Aligned_cols=46  Identities=30%  Similarity=0.513  Sum_probs=42.2

Q ss_pred             CCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCC
Q 048434           38 GSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATT   84 (110)
Q Consensus        38 g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~   84 (110)
                      ++++++|+|+|+|.+++ ++|+++++|||||+|||||||+|||+++|
T Consensus        14 g~~~v~G~v~f~q~~~g-v~v~~~l~GL~pG~hGfHIHe~Gd~~~g~   59 (154)
T 1eso_A           14 GVGQSIGSVTITETDKG-LEFSPDLKALPPGEHGFHIHAKGSCQPAT   59 (154)
T ss_dssp             EEEEEEEEEEEEEETTE-EEEEEEECSCCSEEECEEEESSSCCCCBC
T ss_pred             CCCccEEEEEEEEcCCC-EEEEEEEECCCCCcccEEEcCCCccCCcc
Confidence            34689999999999887 99999999999999999999999999864

>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant, metal binding, greek KEY barrel, oxidoreductase; 1.63A {Mycobacterium tuberculosis} SCOP: b.1.8.1

Probab=99.62  E-value=1.2e-15  Score=116.81  Aligned_cols=55  Identities=22%  Similarity=0.350  Sum_probs=48.6

Q ss_pred             CcceEEEEEcC-CCCeEEEEEEEEeCCceEEEEEEecC---CCCceeEEEEcCCCCCCCC
Q 048434           28 PHSKAIAVLDG-SEGFKGTVSFYQEDGHHTVITVNLAN---LKAGSHGFHVHESGFIRAT   83 (110)
Q Consensus        28 ~~~kAvavl~g-~g~v~G~V~f~q~~~G~v~I~~~l~G---LpPG~HGfHIHe~GDcs~g   83 (110)
                      ...+|+|+|++ +++++|+|+|+|.+++ ++|+++++|   |+||+|||||||+|||+++
T Consensus        36 ~~~~ava~L~~~~g~v~G~V~f~q~~~g-v~v~~~l~G~~~L~pG~HGfHIHe~Gdcs~~   94 (208)
T 1pzs_A           36 GAQSLTSTLTAPDGTKVATAKFEFANGY-ATVTIATTGVGKLTPGFHGLHIHQVGKCEPN   94 (208)
T ss_dssp             --CEEEEEEECTTSCEEEEEEEEEETTE-EEEEEEESSSSSSCSEEECEEEESSCCCCSS
T ss_pred             CCceEEEEEeCCCCceEEEEEEEEcCCc-EEEEEEEeCCccCCCCceeEEEecCCcccCc
Confidence            46889999984 5789999999999776 999999999   9999999999999999873

>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, STRU genomics, unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A

Probab=99.62  E-value=8.9e-16  Score=114.63  Aligned_cols=62  Identities=18%  Similarity=0.210  Sum_probs=50.4

Q ss_pred             CcceEEEEEc-CCCCeEEEEEEEEeCCceEEEEEEec--CC-CCceeEEEEcCCCCCCC-CCccchhhhh
Q 048434           28 PHSKAIAVLD-GSEGFKGTVSFYQEDGHHTVITVNLA--NL-KAGSHGFHVHESGFIRA-TTVGNILTHL   92 (110)
Q Consensus        28 ~~~kAvavl~-g~g~v~G~V~f~q~~~G~v~I~~~l~--GL-pPG~HGfHIHe~GDcs~-g~~g~~~~~~   92 (110)
                      ++.+|+|.++ ++++..|+|+|+| +++ +.|+++++  || |||.|||||||+|||++ +|.+ ...||
T Consensus        18 ~~~~a~a~l~~~~g~~vG~v~f~q-~~~-v~v~~~i~~~GL~~pG~hg~HIHe~Gd~s~~~c~S-aGgHf   84 (175)
T 1xtm_B           18 SAFGHHVQLVNREGKAVGFIEIKE-SDD-EGLDIHISANSLRPGASLGFHIHEKGSCVRPDFES-AGGHF   84 (175)
T ss_dssp             CCCEEEEEEEETTCCEEEEEEEEE-CSS-SSEEEEEEECSCCTTCEECEEEESSCCCCTTTCGG-GCSBC
T ss_pred             CCceEEEEEeCCCCCcEEEEEEEe-CCC-EEEEEEEEcCCCCCCCcceEEEecCCccCCCChhh-ccCcc
Confidence            4578999996 4566779999999 766 89999999  99 99999999999999995 4432 24454

>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-BIND oxidative stress, antioxidant; 1.70A {Homo sapiens}

Probab=99.59  E-value=3e-15  Score=115.75  Aligned_cols=64  Identities=19%  Similarity=0.150  Sum_probs=53.9

Q ss_pred             CcceEEEEEcC-------CCCeEEEEEEEEeCC-ceEEEEEEecCCCCc----eeEEEEcCCCCCCCCCccchhhhh
Q 048434           28 PHSKAIAVLDG-------SEGFKGTVSFYQEDG-HHTVITVNLANLKAG----SHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        28 ~~~kAvavl~g-------~g~v~G~V~f~q~~~-G~v~I~~~l~GLpPG----~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      ...+|+|++++       .+++.|+|+|+|.++ +.+.|+++++|||||    .|||||||+|||+++|.+. ..||
T Consensus        39 ~~~~Avc~l~~~a~~~~~~~~v~G~V~f~q~~~~~~v~v~~~l~GL~pG~~~g~HGfHIHe~Gd~s~gc~SA-GgHf  114 (222)
T 2jlp_A           39 GTLHAACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCEST-GPHY  114 (222)
T ss_dssp             CCEEEEEEEEECTTCCTTSCCCEEEEEEEESSTTSCEEEEEEEECSCSSSSEEEEEEEEESCCCCTTGGGGG-CSBC
T ss_pred             cceEEEEEeeccccccCCCCCcEEEEEEEEeCCCCeEEEEEEEeCCCCCCCCCceeEEEECCCCCCCCcccc-cCCC
Confidence            57899999973       267999999999874 468999999999998    8999999999999976433 5555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	110
d1xsoa_	150	b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Afri	1e-11
d1srda_	154	b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spin	2e-11
d1to4a_	156	b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Bloo	4e-11
d1do5a_	154	b.1.8.1 (A:) Copper chaperone for superoxide dismu	4e-11
d2c9va1	153	b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD	1e-10
d1f1ga_	153	b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Bake	2e-09
d1esoa_	154	b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Esch	4e-09
d2apsa_	155	b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Acti	8e-09
d1eqwa_	155	b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salm	1e-08
d1oala_	151	b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Phot	2e-07
d1ej8a_	140	b.1.8.1 (A:) Copper chaperone for superoxide dismu	8e-07
d1pzsa_	171	b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Myco	4e-06

>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 150

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 55.5 bits (133), Expect = 1e-11
 Identities = 20/48 (41%), Positives = 25/48 (52%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          KA+ VL GS   KG V F Q+D     +   +  L  G HGFH+H  G
Sbjct: 2  KAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFG 49

>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 154

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 54.7 bits (131), Expect = 2e-11
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 31 KAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          KA+AVL G+   +G V+  QED   T + V ++ L  G HGFH+HE G
Sbjct: 4  KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFG 51

>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} Length = 156

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

 Score = 54.3 bits (130), Expect = 4e-11
 Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 31 KAIAVLDGSEGFKGTVSFYQE-DGHHTVITVNLANLKAGSHGFHVHESG 78
          KA+ V+ G+ G KG V F QE D     +    + LKAG HGFHVHE G
Sbjct: 5  KAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFG 53

>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Copper chaperone for superoxide dismutase, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 4e-11
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
            A+A+L G    +G V F Q      +I   +  L+ G HG HVH+ G
Sbjct: 4  GAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYG 52

>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 1e-10
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 30 SKAIAVLDGSEGFKGTVSFYQED-GHHTVITVNLANLKAGSHGFHVHESG 78
          +KA+ VL G    +G ++F Q++      +  ++  L  G HGFHVHE G
Sbjct: 2  TKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFG 51

>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 153

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.7 bits (118), Expect = 2e-09
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 31 KAIAVLDGSEGFKGTVSFYQE-DGHHTVITVNLANLKA-GSHGFHVHESG 78
          +A+AVL G  G  G V F Q  +   T ++  +A        GFH+HE G
Sbjct: 2  QAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFG 51

>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]} Length = 154

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Escherichia coli [TaxId: 562]

 Score = 48.9 bits (116), Expect = 4e-09
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 30  SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNIL 89
              +    G     G+V+  + D      + +L  L  G HGFH+H  G  +  T     
Sbjct: 6   EMNLVTSQGVGQSIGSVTITETDKG-LEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKA 64

Query: 90  THLTNLIVTFTTMRS 104
           +   +         +
Sbjct: 65  SAAESAGGHLDPQNT 79

>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Actinobacillus pleuropneumoniae [TaxId: 715]} Length = 155

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Actinobacillus pleuropneumoniae [TaxId: 715]

 Score = 48.1 bits (114), Expect = 8e-09
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 31 KAIAVLDGSEGFK--GTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNI 88
            +  LD  +G K  GTV   +      V T +L  L  G HGFH+H++           
Sbjct: 5  VQVQQLDPVKGNKDVGTVEITESAYG-LVFTPHLHGLAQGLHGFHIHQNPSCEPKEKDGK 63

Query: 89 LTH 91
          L  
Sbjct: 64 LVA 66

>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]} Length = 155

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Salmonella typhimurium [TaxId: 90371]

 Score = 47.3 bits (112), Expect = 1e-08
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 34 AVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESG 78
          A+  G+    G ++  +      + T +L  L  G HGFHVH + 
Sbjct: 10 ALSSGTGENIGEITVSETPYG-LLFTPHLNGLTPGIHGFHVHTNP 53

>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Photobacterium leiognathi [TaxId: 553611]} Length = 151

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Photobacterium leiognathi [TaxId: 553611]

 Score = 44.6 bits (105), Expect = 2e-07
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 43 KGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGF 79
           GT+   Q      V    LA+L  G HGFH+H++G 
Sbjct: 16 VGTIELSQNKYG-VVFIPELADLTPGEHGFHIHQNGS 51

>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Copper chaperone for superoxide dismutase, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (100), Expect = 8e-07
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 29 HSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANL-KAGSHGFHVHESG 78
            K           +G     Q   + T+  + +  + +AG++   +HE G
Sbjct: 10 FQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASIHEKG 60

>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.8 bits (95), Expect = 4e-06
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 31 KAIAVLDGSEGFK-GTVSFYQEDGHH--TVITVNLANLKAGSHGFHVHESG 78
             + L   +G K  T  F   +G+   T+ T  +  L  G HG H+H+ G
Sbjct: 2  SLTSTLTAPDGTKVATAKFEFANGYATVTIATTGVGKLTPGFHGLHIHQVG 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1xsoa_	150	Cu,Zn superoxide dismutase, SOD {African clawed fr	99.8
d1srda_	154	Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia	99.78
d1to4a_	156	Cu,Zn superoxide dismutase, SOD {Blood fluke (Schi	99.76
d2c9va1	153	Cu,Zn superoxide dismutase, SOD {Human (Homo sapie	99.75
d1do5a_	154	Copper chaperone for superoxide dismutase, C-termi	99.74
d1f1ga_	153	Cu,Zn superoxide dismutase, SOD {Baker's yeast (Sa	99.72
d1ej8a_	140	Copper chaperone for superoxide dismutase, C-termi	99.68
d1oala_	151	Cu,Zn superoxide dismutase, SOD {Photobacterium le	99.66
d1eqwa_	155	Cu,Zn superoxide dismutase, SOD {Salmonella typhim	99.64
d2apsa_	155	Cu,Zn superoxide dismutase, SOD {Actinobacillus pl	99.63
d1esoa_	154	Cu,Zn superoxide dismutase, SOD {Escherichia coli	99.62
d1pzsa_	171	Cu,Zn superoxide dismutase, SOD {Mycobacterium tub	99.58

>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.80  E-value=5.1e-20  Score=132.44  Aligned_cols=55  Identities=36%  Similarity=0.517  Sum_probs=51.9

Q ss_pred             ceEEEEEcCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCC
Q 048434           30 SKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATT   84 (110)
Q Consensus        30 ~kAvavl~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~   84 (110)
                      .+|+|++++++++.|+|+|+|.++|.|+|+++++|||||+|||||||+|||+++|
T Consensus         1 ~~Ava~~~g~g~v~G~v~f~q~~~g~v~V~~~l~GL~pG~Hg~HIHe~Gd~~~~~   55 (150)
T d1xsoa_           1 VKAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGC   55 (150)
T ss_dssp             CEEEEEEBCSSSCEEEEEEEESTTSCEEEEEEEESCCSEEEEEEEESCCCCTTGG
T ss_pred             CEEEEEEeCCCceEEEEEEEECCCCcEEEEEEEccCCCcceeEEEecCCCccccc
Confidence            4899999999999999999999988799999999999999999999999999875

>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.78  E-value=7.2e-20  Score=132.02  Aligned_cols=56  Identities=39%  Similarity=0.639  Sum_probs=52.9

Q ss_pred             cceEEEEEcCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCC
Q 048434           29 HSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATT   84 (110)
Q Consensus        29 ~~kAvavl~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~   84 (110)
                      .++|+|++++++++.|+|+|+|.++|.|+|+++++|||||+|||||||+|||+++|
T Consensus         2 ~~~Ava~~~g~~~v~G~v~f~q~~~g~v~v~v~l~GL~pG~hg~HIHe~Gd~~~~~   57 (154)
T d1srda_           2 TKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGC   57 (154)
T ss_dssp             EEEEEEECBCSSSCCCEEEEEEETTSCEEEEEEEESCCSEECCEEEESCCCCTTGG
T ss_pred             CcEEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEecCCCCceeEEEecCCccCCCc
Confidence            58999999998899999999999888899999999999999999999999999875

>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

Probab=99.76  E-value=8.1e-19  Score=126.91  Aligned_cols=63  Identities=38%  Similarity=0.602  Sum_probs=54.7

Q ss_pred             cceEEEEEcCCCCeEEEEEEEEeC-CceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           29 HSKAIAVLDGSEGFKGTVSFYQED-GHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        29 ~~kAvavl~g~g~v~G~V~f~q~~-~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      ..+|+|++++++++.|+|+|+|.. ++.++|+++++|||||.|||||||+|||+++|.+. ..|+
T Consensus         3 ~~~Ava~~~g~~~v~G~v~F~Q~~~~~~v~V~~~l~GL~pG~hg~HIHe~Gd~s~~~~sa-GgH~   66 (156)
T d1to4a_           3 NMKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSA-GAHF   66 (156)
T ss_dssp             CCEEEEEEBCSSSCEEEEEEEESSTTSCEEEEEEEESCCSEEEEEEEESCCCCTTTTGGG-CSBC
T ss_pred             ceEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEccCCCcceeeEEcCCCccCCccccc-cccc
Confidence            579999999988999999999986 45799999999999999999999999999886332 4454

>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.6e-18  Score=124.75  Aligned_cols=55  Identities=35%  Similarity=0.524  Sum_probs=50.4

Q ss_pred             ceEEEEEcCCCCeEEEEEEEEeC-CceEEEEEEecCCCCceeEEEEcCCCCCCCCC
Q 048434           30 SKAIAVLDGSEGFKGTVSFYQED-GHHTVITVNLANLKAGSHGFHVHESGFIRATT   84 (110)
Q Consensus        30 ~kAvavl~g~g~v~G~V~f~q~~-~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~   84 (110)
                      .+|+|++++++++.|+|+|+|.+ ++.|+|+++++|||||.|||||||+|||+++|
T Consensus         2 ~~Ava~~~g~~~v~G~v~F~q~~~~~~v~v~~~l~GL~~g~hg~HIHe~Gd~~~~~   57 (153)
T d2c9va1           2 TKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGC   57 (153)
T ss_dssp             EEEEEEEBCSSSCEEEEEEEECSTTCCEEEEEEEESCCSEEEEEEEESCCCCTTGG
T ss_pred             ceEEEEEcCCCccEEEEEEEEeCCCCcEEEEEEEeeCCCCceeEEEecCCCCCcCc
Confidence            58999999988999999999986 45689999999999999999999999998865

>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Copper chaperone for superoxide dismutase, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.8e-18  Score=124.28  Aligned_cols=63  Identities=29%  Similarity=0.456  Sum_probs=54.6

Q ss_pred             cceEEEEEcCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCCccchhhhh
Q 048434           29 HSKAIAVLDGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        29 ~~kAvavl~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      ...|+|++++++++.|+|+|+|..++.++|+++++|||||.|||||||+|||+++|.+. .+|+
T Consensus         3 ~~~Ava~~~~~~~v~G~v~f~q~~~~~v~v~~~l~GL~pg~hg~HIHe~Gd~s~~~~s~-Ggh~   65 (154)
T d1do5a_           3 LGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSC-GNHF   65 (154)
T ss_dssp             CEEEEEEEBCSSSCEEEEEEEEEETTEEEEEEEEESCCSEEEEEEEESCCCCTTGGGTT-CSBC
T ss_pred             cceEEEEECCCCccEEEEEEEEeCCCCEEEEEEEccCCCCceEEEEecCCcCCCCcccc-ccce
Confidence            46789999998899999999997656699999999999999999999999999876433 5555

>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=7.1e-18  Score=121.20  Aligned_cols=62  Identities=32%  Similarity=0.503  Sum_probs=53.3

Q ss_pred             ceEEEEEcCCCCeEEEEEEEEeCC-ceEEEEEEecCCCC-ceeEEEEcCCCCCCCCCccchhhhh
Q 048434           30 SKAIAVLDGSEGFKGTVSFYQEDG-HHTVITVNLANLKA-GSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        30 ~kAvavl~g~g~v~G~V~f~q~~~-G~v~I~~~l~GLpP-G~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      .+|+|++++++++.|+|+|+|.++ +.++|+++++||+| |.|||||||+|||+++|.+. ..||
T Consensus         1 v~AvA~~~g~~~v~G~v~F~q~~~~~~v~V~~~l~GL~p~g~hg~HIHe~Gd~~~~~~sa-GgH~   64 (153)
T d1f1ga_           1 VQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSA-GPHF   64 (153)
T ss_dssp             CEEEEEEBCSSSCEEEEEEECSSTTSCEEEEEEEESCCSSCEEEEEEESCCCCTTTTGGG-CSBC
T ss_pred             CEEEEEEcCCCCcEEEEEEEEeCCCCeEEEEEEEecCCCCCeeeEEEeCCCCcCCCcccc-cccc
Confidence            489999999889999999999975 46999999999988 79999999999999986332 4554

>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Copper chaperone for superoxide dismutase, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=2.2e-17  Score=117.89  Aligned_cols=61  Identities=18%  Similarity=0.283  Sum_probs=50.4

Q ss_pred             eEEEEEcC----------CCCeEEEEEEEEeCCceEEEEEEecCCC-CceeEEEEcCCCCCCCCCccchhhhh
Q 048434           31 KAIAVLDG----------SEGFKGTVSFYQEDGHHTVITVNLANLK-AGSHGFHVHESGFIRATTVGNILTHL   92 (110)
Q Consensus        31 kAvavl~g----------~g~v~G~V~f~q~~~G~v~I~~~l~GLp-PG~HGfHIHe~GDcs~g~~g~~~~~~   92 (110)
                      .|+|++..          ++.+.|.|+|+|.+++.+.|+++++||| ||.|||||||+|||+++|.+. ..|+
T Consensus         2 ~av~ile~~~~~~~~~k~~~~V~G~vrf~q~~~~~~~v~~~i~GL~~pg~hg~hIHe~GDls~Gc~Sa-G~hf   73 (140)
T d1ej8a_           2 SAVAILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASIHEKGDVSKGVEST-GKVW   73 (140)
T ss_dssp             EEEEEEECCSCCTTCCCCSCCEEEEEEEEEEETTEEEEEEEEEEESSCEEEEEEEESCCCCTTGGGGS-CSEE
T ss_pred             ceEEEeeecccceeeccCCCcceEEEEEEEECCCCEEEEEEEECCCCCCcccEEEecCCCCCCChhhc-cccc
Confidence            46777753          3579999999998767789999999996 799999999999999987543 5555

>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Photobacterium leiognathi [TaxId: 553611]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Photobacterium leiognathi [TaxId: 553611]

Probab=99.66  E-value=1.1e-16  Score=115.49  Aligned_cols=46  Identities=30%  Similarity=0.500  Sum_probs=43.0

Q ss_pred             CCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCCC
Q 048434           38 GSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRATT   84 (110)
Q Consensus        38 g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g~   84 (110)
                      ..|++.|+|+|+|.++| |.|+++++|||||+|||||||+|||+++|
T Consensus        11 ~~g~~~G~v~f~q~~~g-v~i~~~l~GL~pG~Hg~HIHe~Gdcs~~~   56 (151)
T d1oala_          11 QTGKPVGTIELSQNKYG-VVFIPELADLTPGEHGFHIHQNGSCASSE   56 (151)
T ss_dssp             TTCCEEEEEEEEEETTE-EEEEEEECSCCSEEECEEEESSSCCCCEE
T ss_pred             CCCCeEEEEEEEEcCCc-EEEEEEecCCCCCceeEEEecCCCcCccc
Confidence            35789999999999988 99999999999999999999999999875

>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.64  E-value=9.6e-17  Score=115.86  Aligned_cols=53  Identities=26%  Similarity=0.339  Sum_probs=46.3

Q ss_pred             ceEEEEE-cCCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCC
Q 048434           30 SKAIAVL-DGSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRAT   83 (110)
Q Consensus        30 ~kAvavl-~g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g   83 (110)
                      .++.+.+ +++|++.|+|+|+|.++| |+|+++++|||||+|||||||+|||+++
T Consensus         5 ~~~~~~l~~~~g~~~G~v~f~q~~~g-v~I~~~l~GL~pg~Hg~HIHe~Gdc~~~   58 (155)
T d1eqwa_           5 VKMNDALSSGTGENIGEITVSETPYG-LLFTPHLNGLTPGIHGFHVHTNPSCMPG   58 (155)
T ss_dssp             EEEEEECSSSEEEEEEEEEEEEETTE-EEEEEEECSCCSEEECEEEESSSCCCCE
T ss_pred             EEEeeeecCCCCCcEEEEEEEEcCCC-EEEEEEEeCCCCCceeEEEccCCCcCCC
Confidence            4445445 477889999999999988 9999999999999999999999999874

>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Actinobacillus pleuropneumoniae [TaxId: 715]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Actinobacillus pleuropneumoniae [TaxId: 715]

Probab=99.63  E-value=2.6e-16  Score=113.83  Aligned_cols=54  Identities=28%  Similarity=0.340  Sum_probs=48.2

Q ss_pred             cceEEEEEcC--CCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCCC
Q 048434           29 HSKAIAVLDG--SEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRAT   83 (110)
Q Consensus        29 ~~kAvavl~g--~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~g   83 (110)
                      ...+++.++.  .+++.|+|+|+|.++| ++|+++++|||||+|||||||+|||+++
T Consensus         3 ~~~~v~~l~~~~g~~~~G~v~f~q~~~g-v~v~~~v~GL~pG~hg~HIHe~gdc~~~   58 (155)
T d2apsa_           3 LVVQVQQLDPVKGNKDVGTVEITESAYG-LVFTPHLHGLAQGLHGFHIHQNPSCEPK   58 (155)
T ss_dssp             CEEEEEECCSSSCCEEEEEEEEEEETTE-EEEEEEECSCCSEEECEEEESSSCCCCE
T ss_pred             EEEEEEEEEcCCCCeeEEEEEEEEcCCc-EEEEEEEeCCCCCceeEEEcccCCCCCc
Confidence            4667888874  3579999999999988 8999999999999999999999999875

>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=2.3e-16  Score=113.85  Aligned_cols=44  Identities=30%  Similarity=0.513  Sum_probs=40.8

Q ss_pred             CCCCeEEEEEEEEeCCceEEEEEEecCCCCceeEEEEcCCCCCCC
Q 048434           38 GSEGFKGTVSFYQEDGHHTVITVNLANLKAGSHGFHVHESGFIRA   82 (110)
Q Consensus        38 g~g~v~G~V~f~q~~~G~v~I~~~l~GLpPG~HGfHIHe~GDcs~   82 (110)
                      |.++++|+|+|+|.+++ |+|+++++|||||+|||||||+|||++
T Consensus        14 G~g~~~G~v~f~q~~~g-v~v~~~l~GL~pG~hg~HIHe~Gdc~~   57 (154)
T d1esoa_          14 GVGQSIGSVTITETDKG-LEFSPDLKALPPGEHGFHIHAKGSCQP   57 (154)
T ss_dssp             EEEEEEEEEEEEEETTE-EEEEEEECSCCSEEECEEEESSSCCCC
T ss_pred             CCCccEEEEEEEEcCCC-EEEEEEEeCCCCCcceEEEcCCCcCCc
Confidence            45679999999999988 999999999999999999999999974

>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=1.8e-15  Score=111.09  Aligned_cols=54  Identities=24%  Similarity=0.387  Sum_probs=46.4

Q ss_pred             eEEEEEc-CCCCeEEEEEEEEeCCceEEEEEEecC---CCCceeEEEEcCCCCCCCCCc
Q 048434           31 KAIAVLD-GSEGFKGTVSFYQEDGHHTVITVNLAN---LKAGSHGFHVHESGFIRATTV   85 (110)
Q Consensus        31 kAvavl~-g~g~v~G~V~f~q~~~G~v~I~~~l~G---LpPG~HGfHIHe~GDcs~g~~   85 (110)
                      .+.|.++ .+|+..|+++|+|.+++ +.|++++.|   ||||+|||||||+|||+++|+
T Consensus         2 ~~~a~l~~~~G~~vg~~~~~~~~~~-~~v~i~~~g~~gL~pG~HGfHIHe~Gdc~~~~~   59 (171)
T d1pzsa_           2 SLTSTLTAPDGTKVATAKFEFANGY-ATVTIATTGVGKLTPGFHGLHIHQVGKCEPNSV   59 (171)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTE-EEEEEEESSSSSSCSEEECEEEESSCCCCSSBC
T ss_pred             ceEEEEECCCCCeEEEEEEEEcCCC-EEEEEEeCCcCCCCCcceeEEEecCCcCCCCcc
Confidence            4566776 56889999999999877 889988877   999999999999999998754