Citrus Sinensis ID: 048448
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 308 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WQ63 | 470 | Sugar transporter ERD6-li | yes | no | 0.603 | 0.395 | 0.488 | 1e-54 | |
| P93051 | 463 | Sugar transporter ERD6-li | no | no | 0.662 | 0.440 | 0.424 | 8e-48 | |
| Q8LBI9 | 482 | Sugar transporter ERD6-li | no | no | 0.698 | 0.446 | 0.397 | 2e-46 | |
| Q3ECP7 | 470 | Sugar transporter ERD6-li | no | no | 0.574 | 0.376 | 0.463 | 4e-42 | |
| Q9FRL3 | 487 | Sugar transporter ERD6-li | no | no | 0.587 | 0.371 | 0.409 | 2e-39 | |
| Q93YP9 | 488 | Sugar transporter ERD6-li | no | no | 0.587 | 0.370 | 0.409 | 5e-39 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.600 | 0.393 | 0.410 | 2e-36 | |
| O04036 | 496 | Sugar transporter ERD6 OS | no | no | 0.574 | 0.356 | 0.398 | 4e-36 | |
| Q9LTP6 | 488 | Putative sugar transporte | no | no | 0.613 | 0.387 | 0.403 | 5e-36 | |
| Q7XA64 | 327 | Sugar transporter ERD6-li | no | no | 0.509 | 0.480 | 0.449 | 2e-34 |
| >sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 151/225 (67%), Gaps = 39/225 (17%)
Query: 45 PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAAPL---------- 94
PTQFGIM +L SY+++S+FGSIL +GA++GAITSG+I+D++ RKGA L
Sbjct: 58 PTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGAMRLSSVISAIGWL 117
Query: 95 ----------LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFA 144
LDFGRFL G G G +S+VVPV+IAEI+P+ LR ALAT+NQLFIV G
Sbjct: 118 IIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALATLNQLFIVIGLASM 177
Query: 145 YVIGALMSWRILALTGL----------FFIPESPRWLAMIGKNQEFEVALSMVRGPNVDV 194
++IGA+++WR LALTG+ +FIPESPRWL M+G++ +FE+AL +RGP ++
Sbjct: 178 FLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFEIALQKLRGPQANI 237
Query: 195 SRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNV 239
+RE EI QE LA + LP+ ++DL +++NIRFV V
Sbjct: 238 TREAGEI---------QEYLASLAHLPKATLMDLIDKKNIRFVIV 273
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 191 bits (484), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 116/273 (42%), Positives = 147/273 (53%), Gaps = 69/273 (25%)
Query: 28 VREPLIDRKNQAKEQ---------------------------QNPTQFGIMADLKESYAE 60
VREPL+D KN A + +P Q I DL + AE
Sbjct: 8 VREPLVD-KNMAGSKPDQPWMVYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAE 66
Query: 61 YSLFGSILTIGAIIGAITSGRIADWVARKGAAPL--------------------LDFGRF 100
+SLFGS+LT GA+IGAITSG IAD V RKGA + LD GR
Sbjct: 67 FSLFGSLLTFGAMIGAITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRL 126
Query: 101 LAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALMSWRILALT- 159
G G+G SYVVP++IAEI PK R AL T+NQ+ I TG +++IG L++WR+LAL
Sbjct: 127 ATGYGMGAFSYVVPIFIAEIAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIG 186
Query: 160 ---------GLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEILSKRITLIL 210
GLFFIPESPRWLA +G++ EFE AL +RG D+S E EI
Sbjct: 187 IIPCAASFLGLFFIPESPRWLAKVGRDTEFEAALRKLRGKKADISEEAAEI--------- 237
Query: 211 QESLALINQLPRVNILDLFNRRNIRFVNVYIAF 243
Q+ + + +LP+ +LDLF RR IR +V IAF
Sbjct: 238 QDYIETLERLPKAKMLDLFQRRYIR--SVLIAF 268
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 154/292 (52%), Gaps = 77/292 (26%)
Query: 5 KDVESGNSNSSEPNVDRKNEYGNVREPLIDRKNQAKEQQN-------------------- 44
KDVE G + N+ ++ +P + ++ KE +N
Sbjct: 7 KDVERG---------EIVNKVEDLGKPFLTHEDDEKESENNESYLMVLFSTFVAVCGSFE 57
Query: 45 ---------PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGA---- 91
PTQ I DL S AE+S+FGSILTIGA++GA+ SG+I+D+ RKGA
Sbjct: 58 FGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGAMRTS 117
Query: 92 ----------------APLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQL 135
A LLD GRF G GIGV SYVVPVYIAEI+PKNLR L T+NQL
Sbjct: 118 ACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTTLNQL 177
Query: 136 FIVTGALFAYVIGALMSWRILALT----------GLFFIPESPRWLAMIGKNQEFEVALS 185
IV G+ +++IG+L+SW+ LALT GL FIPESPRWLA G +EF VAL
Sbjct: 178 MIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFRVALQ 237
Query: 186 MVRGPNVDVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFV 237
+RG + D++ E + I Q S+ + LP+ I DL +++ R V
Sbjct: 238 KLRGKDADITNEADGI---------QVSIQALEILPKARIQDLVSKKYGRSV 280
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 126/220 (57%), Gaps = 43/220 (19%)
Query: 43 QNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGA----------- 91
+P Q + +L S AEYSLFGSILTIGA+IGA SGRIAD + R+
Sbjct: 53 SSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRATMGFSEMFCILG 112
Query: 92 ---------APLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGAL 142
A LD GRFL G G+GV S+VVPVYIAEITPK LR TV+QL I G
Sbjct: 113 WLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTTVHQLLICLGVS 172
Query: 143 FAYVIGALMSWRILAL----------TGLFFIPESPRWLAMIGKNQEFEVALSMVRGPNV 192
Y++G+ + WRILAL GLF IPESPRWLA +GK +EFE+AL +RG +
Sbjct: 173 VTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFEIALQRLRGESA 232
Query: 193 DVSRELNEI--LSKRITLILQESLALINQLPRVNILDLFN 230
D+S E NEI ++R+T L +I+DLF
Sbjct: 233 DISYESNEIKDYTRRLT-----------DLSEGSIVDLFQ 261
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 126/220 (57%), Gaps = 39/220 (17%)
Query: 43 QNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGA----------- 91
+PTQ I DL + +EYS+FGS+ +GA++GAI SG+IA+++ RKG+
Sbjct: 69 SSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIPNIIG 128
Query: 92 ---------APLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGAL 142
L GR L G G+G++SY VPVYIAEI P+N+R L +VNQL + G +
Sbjct: 129 WLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVNQLSVTIGIM 188
Query: 143 FAYVIGALMSWRILA----------LTGLFFIPESPRWLAMIGKNQEFEVALSMVRGPNV 192
AY++G + WRILA + GLFFIPESPRWLA +G EFE +L ++RG
Sbjct: 189 LAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETSLQVLRGFET 248
Query: 193 DVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRR 232
D++ E+NEI + S+A + V +DL RR
Sbjct: 249 DITVEVNEI---------KRSVASSTKRNTVRFVDLKRRR 279
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 127/220 (57%), Gaps = 39/220 (17%)
Query: 43 QNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGA----------- 91
+PTQ I DL + +EYS+FGS+ +GA++GAI SG+IA++V RKG+
Sbjct: 70 SSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSLMIAAIPNIIG 129
Query: 92 ---------APLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGAL 142
L GR L G G+G++SY VPVYIAEI P+ +R AL +VNQL + G +
Sbjct: 130 WLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSVNQLSVTIGIM 189
Query: 143 FAYVIGALMSWRILA----------LTGLFFIPESPRWLAMIGKNQEFEVALSMVRGPNV 192
AY++G + WRILA + GLFFIPESPRWLA +G +FE +L ++RG
Sbjct: 190 LAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFETSLQVLRGFET 249
Query: 193 DVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRR 232
D++ E+NEI + S+A ++ V +DL RR
Sbjct: 250 DITVEVNEI---------KRSVASSSKRSAVRFVDLKRRR 280
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 121/224 (54%), Gaps = 39/224 (17%)
Query: 39 AKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKG-------- 90
A + Q GI+ DL S A+YS+FGSI+T G +IGAI SG++AD + RKG
Sbjct: 49 AAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIFSGKVADLMGRKGTMWFAQIF 108
Query: 91 ------AAPL------LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIV 138
A L LD GR G +G++SYV+PVYIAEITPK++R A NQL
Sbjct: 109 CIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIAEITPKHVRGAFVFANQLMQS 168
Query: 139 TGALFAYVIGALMSWRILALTG----------LFFIPESPRWLAMIGKNQEFEVALSMVR 188
G YVIG + WR LAL G LFFIPESPR L G +E +L +R
Sbjct: 169 CGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLFFIPESPRLLGKWGHEKECRASLQSLR 228
Query: 189 GPNVDVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRR 232
G + D+S E N I +E++ L ++ P+ ++DLF RR
Sbjct: 229 GDDADISEEANTI---------KETMILFDEGPKSRVMDLFQRR 263
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 119/216 (55%), Gaps = 39/216 (18%)
Query: 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGA--------------- 91
Q GI DL S AEYS+FGSILT+G +IGA+ SG++AD + RK
Sbjct: 83 QAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCEFFCITGWLCV 142
Query: 92 -----APLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYV 146
A LD GR L G G+G+ SYV+PVYIAEI PK++R + NQL G ++
Sbjct: 143 ALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLMQNCGISLFFI 202
Query: 147 IGALMSWRILALTG----------LFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSR 196
IG + WR+L + G LFFIPESPRWLA +G+++E +L +RG +VD+SR
Sbjct: 203 IGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGRDKECRSSLQRLRGSDVDISR 262
Query: 197 ELNEILSKRITLILQESLALINQLPRVNILDLFNRR 232
E N I ++++ + + +LF RR
Sbjct: 263 EANTI---------RDTIDMTENGGETKMSELFQRR 289
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTP6|EDL13_ARATH Putative sugar transporter ERD6-like 13 OS=Arabidopsis thaliana GN=At3g20460 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 121/228 (53%), Gaps = 39/228 (17%)
Query: 44 NPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAAPL--------- 94
+P Q GIMA L S AE+S FG++LTIG ++GA SG++AD R+GA +
Sbjct: 75 SPAQTGIMAGLNLSLAEFSFFGAVLTIGGLVGAAMSGKLADVFGRRGALGVSNSFCMAGW 134
Query: 95 -----------LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALF 143
LD GR G GV SYVVPVYI EI PK +R + +N L +
Sbjct: 135 LMIAFSQATWSLDIGRLFLGVAAGVASYVVPVYIVEIAPKKVRGTFSAINSLVMCASVAV 194
Query: 144 AYVIGALMSWRILAL----------TGLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVD 193
Y++G+++SW+ LAL GLFFIPESPRWL+ G+ +E EV+L +RG N D
Sbjct: 195 TYLLGSVISWQKLALISTVPCVFEFVGLFFIPESPRWLSRNGRVKESEVSLQRLRGNNTD 254
Query: 194 VSRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNVYI 241
+++E EI K+ LQE DLFN R R V V I
Sbjct: 255 ITKEAAEI--KKYMDNLQE-------FKEDGFFDLFNPRYSRVVTVGI 293
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA64|ERDL9_ARATH Sugar transporter ERD6-like 9 OS=Arabidopsis thaliana GN=At3g05155 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 105/187 (56%), Gaps = 30/187 (16%)
Query: 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIAD------------------WVA 87
T IM DL S ++S+FGS+LT G +IGA+ S IAD W+A
Sbjct: 51 TMASIMEDLDLSITQFSVFGSLLTFGGMIGALFSATIADSFGCKMTLWITEVFCISGWLA 110
Query: 88 RKGAAPL--LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAY 145
A + LD GRF G G+G++SYVVPVYIAEITPK +R NQL G AY
Sbjct: 111 IALAKNIIWLDLGRFFVGIGVGLLSYVVPVYIAEITPKTVRGTFTFSNQLLQNCGVATAY 170
Query: 146 VIGALMSWRILA----------LTGLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVS 195
+G MSWRI+A L GLFF+PESPRWLA G+++E EV L +RG D+
Sbjct: 171 YLGNFMSWRIIALIGILPCLIQLVGLFFVPESPRWLAKEGRDEECEVVLQKLRGDEADIV 230
Query: 196 RELNEIL 202
+E EIL
Sbjct: 231 KETQEIL 237
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 308 | ||||||
| 147865507 | 771 | hypothetical protein VITISV_037729 [Viti | 0.964 | 0.385 | 0.421 | 2e-69 | |
| 255542514 | 455 | sugar transporter, putative [Ricinus com | 0.737 | 0.498 | 0.531 | 4e-66 | |
| 356557849 | 312 | PREDICTED: LOW QUALITY PROTEIN: sugar tr | 0.740 | 0.730 | 0.442 | 7e-61 | |
| 310877874 | 473 | putative ERD6-like transporter [Vitis vi | 0.746 | 0.486 | 0.475 | 2e-58 | |
| 3776581 | 483 | Similar to Beta integral membrane protei | 0.857 | 0.546 | 0.408 | 1e-57 | |
| 298205019 | 874 | unnamed protein product [Vitis vinifera] | 0.746 | 0.263 | 0.475 | 1e-57 | |
| 359487967 | 1179 | PREDICTED: uncharacterized protein LOC10 | 0.746 | 0.195 | 0.475 | 2e-57 | |
| 30679397 | 470 | sugar transporter ERD6-like 8 [Arabidops | 0.603 | 0.395 | 0.488 | 7e-53 | |
| 6729025 | 463 | putative sugar transporter [Arabidopsis | 0.603 | 0.401 | 0.488 | 8e-53 | |
| 297829028 | 470 | sugar transporter family protein [Arabid | 0.603 | 0.395 | 0.488 | 1e-52 |
| >gi|147865507|emb|CAN83661.1| hypothetical protein VITISV_037729 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 170/403 (42%), Positives = 216/403 (53%), Gaps = 106/403 (26%)
Query: 1 MARKKDVESGNSNSSEPNVDR--------KNEYGNVREPLID------------------ 34
MA K++VE GN N +EP + + K+ G +R L+
Sbjct: 1 MAAKQEVEKGNGNITEPLIVQEKQGEAQIKSNNGGLRMVLLSIFVAVCGSFEFGSCVGLC 60
Query: 35 ----RKNQAKEQ--QNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVAR 88
K A + P Q+GIM +L SY++YS+FGSIL+IGA+IGAI+SG IAD + R
Sbjct: 61 YFSAYKLLAMQAGFSAPAQYGIMNELGLSYSQYSVFGSILSIGAMIGAISSGWIADSIGR 120
Query: 89 KGAAPLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIG 148
KG + LD GRFL G GIG++SYV+PV+IAEITPKN R LAT NQLFIVTG A+V+G
Sbjct: 121 KGGSVSLDSGRFLLGYGIGILSYVIPVFIAEITPKNHRGTLATANQLFIVTGLFIAFVVG 180
Query: 149 ALMSWRILALTG----------LFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSREL 198
A ++WR LALTG LFFIPESPRWLA G +EF+ L +RG DVS E
Sbjct: 181 AFVTWRTLALTGILPCMVLLVGLFFIPESPRWLARAGYEREFKAELQKLRGVEADVSEEE 240
Query: 199 NEILSKRITL-----------------------------ILQESL---------ALINQL 220
EI +T IL SL +LI++L
Sbjct: 241 AEIQEYMVTHQLLPKVGIMVLLDKQNVSSVIESLLNLGGILYSSLQVIVTAFGASLIDRL 300
Query: 221 PR----------------------VNILDLFNRRNIR----FVNVYIAFYSIGMGPIPWV 254
R ++I L NR N + V+I FYS+G+GPIPW+
Sbjct: 301 GRRPLLMAHQLAPNLVPILAVTGIMHIDKLVNRENGTDVSVLIQVHIGFYSVGLGPIPWL 360
Query: 255 IMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTWSSCG 297
IM EIFPL++K GSLVTLVNW G+WA+SY+F LM WSS G
Sbjct: 361 IMSEIFPLHVKAIAGSLVTLVNWFGAWAVSYTFNFLMNWSSHG 403
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542514|ref|XP_002512320.1| sugar transporter, putative [Ricinus communis] gi|223548281|gb|EEF49772.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 144/271 (53%), Positives = 172/271 (63%), Gaps = 44/271 (16%)
Query: 1 MARKKDVESGNSNSSEPNVDRKNEYGNVREPLIDRKNQAK-------------------- 40
MA +D+E+ + + EP V +K E G +E KN
Sbjct: 1 MAISEDIENCDGSLVEPFVGQKKEIGRKQE---SEKNGGDLGMVLFSTAIAICGSFVFGC 57
Query: 41 --EQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAAPLLDFG 98
PTQFGIM DL SY+EYS+FGSIL IGA+IGAITSGRIAD V RKG LDFG
Sbjct: 58 CVGYSAPTQFGIMNDLSLSYSEYSVFGSILNIGAMIGAITSGRIADSVGRKGGPLFLDFG 117
Query: 99 RFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALMSWRILAL 158
RFL G GIGV+SYVVPV+IAEITPK LR LAT NQ FIV G + Y IGAL++WRILA+
Sbjct: 118 RFLTGYGIGVISYVVPVFIAEITPKELRGTLATANQFFIVVGIMVIYSIGALVNWRILAI 177
Query: 159 T----------GLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEILSKRITL 208
T GLFFIPESPRWLAM+G+ E E +L +RG N D+S+E ++I
Sbjct: 178 TGTIPCLIVIIGLFFIPESPRWLAMVGRQHESESSLQRLRGANADISQEESDI------- 230
Query: 209 ILQESLALINQLPRVNILDLFNRRNIRFVNV 239
QESLALI +LP+V +LDLF+RRNIRFV V
Sbjct: 231 --QESLALIRRLPKVTVLDLFHRRNIRFVIV 259
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557849|ref|XP_003547223.1| PREDICTED: LOW QUALITY PROTEIN: sugar transporter ERD6-like 16-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 143/323 (44%), Positives = 182/323 (56%), Gaps = 95/323 (29%)
Query: 45 PTQFGIMADLKESYAE----YSLFGSILTIGAIIGAITSGRIADWVARKGAAPL------ 94
PTQ I ADL S AE +S+FGS++TIGA++GAI+SGRI D++ RKGA +
Sbjct: 25 PTQAAIRADLNLSLAEDSILFSMFGSLVTIGAMLGAISSGRITDFIGRKGAMRISAGFCI 84
Query: 95 --------------LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTG 140
LD GRF G GIGV+SYVVPVYI EI PKNLR LAT NQL IVT
Sbjct: 85 TGWLVVFFSKGSYSLDLGRFFTGYGIGVISYVVPVYIVEIAPKNLREELATTNQLLIVTE 144
Query: 141 ALFAYVIGALMSWRILALTGLF----------FIPESPRWLAMIGKNQEFEVALSMVRGP 190
A ++++G++++WR LAL GL FIPESPRWLA +G+ + F++AL +RG
Sbjct: 145 ASVSFLLGSVINWRKLALAGLVSCIAXLVGLCFIPESPRWLAKVGREKXFQLALRRLRGK 204
Query: 191 NVDVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNVYIAFYSIGMGP 250
+VD+S E EIL +YIA YSIG GP
Sbjct: 205 DVDISDEAAEIL------------------------------------IYIAAYSIGEGP 228
Query: 251 IPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTWSS--------------- 295
+PWVIM EIFP+++KG GSLV LVNW+G+W +SY+F LM+WSS
Sbjct: 229 VPWVIMSEIFPIHVKGIAGSLVVLVNWLGAWIVSYTFNFLMSWSSPGTXFLYAGSSLLTI 288
Query: 296 ----------CGRTLEEVQASVS 308
G+TLEEVQA +S
Sbjct: 289 LFVAKLVPETKGKTLEEVQACIS 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|310877874|gb|ADP37168.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 170/284 (59%), Gaps = 54/284 (19%)
Query: 1 MARKKDVESGNSNSSEPNVDRKNEY------GNVREPLID---------RKNQAKEQQNP 45
MA ++DVE GN ++P + +K E G + L+ P
Sbjct: 1 MATRQDVEKGNDTITKPLIGQKKEVQIQSNNGGLWVVLLSTLVAVCGSFEFGSCVGYSAP 60
Query: 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAAPL----------- 94
++GIM DL SY+EYS FGSILTIGA+IGAITSG+IAD++ RKGA +
Sbjct: 61 AEYGIMDDLGISYSEYSFFGSILTIGAMIGAITSGQIADFIGRKGAMGMSSMICIAGWFT 120
Query: 95 --LDFG-------RFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAY 145
L FG RFL G GIGV+SYVVPV+IAEITPKNLR ALAT NQLFIVTG AY
Sbjct: 121 VYLSFGSFSLYSGRFLLGYGIGVLSYVVPVFIAEITPKNLRGALATANQLFIVTGLFIAY 180
Query: 146 VIGALMSWRILALT----------GLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVS 195
VIGA+++WRILALT GLFFIPESPRWLA +G +EF+++L +RG + D+S
Sbjct: 181 VIGAIVTWRILALTGIVPCMVLLVGLFFIPESPRWLAKVGNEKEFKLSLQKLRGADADIS 240
Query: 196 RELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNV 239
E+ EI QE + LP+V I+DL ++NIR V V
Sbjct: 241 EEVAEI---------QEYIVTHELLPKVTIMDLLGKQNIRSVVV 275
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3776581|gb|AAC64898.1| Similar to Beta integral membrane protein homolog gb|U43629 from A. thaliana [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 189/362 (52%), Gaps = 98/362 (27%)
Query: 44 NPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGA------------ 91
+P Q + +L S AEYSLFGSILTIGA+IGA SGRIAD + R+
Sbjct: 117 SPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRATMGFSEMFCILGW 176
Query: 92 --------APLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALF 143
A LD GRFL G G+GV S+VVPVYIAEITPK LR TV+QL I G
Sbjct: 177 LAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTTVHQLLICLGVSV 236
Query: 144 AYVIGALMSWRILAL----------TGLFFIPESPRWL---------AMIGKNQEFEVAL 184
Y++G+ + WRILAL GLF IPESPRWL A +GK +EFE+AL
Sbjct: 237 TYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLKIIVRKNSQAKVGKWEEFEIAL 296
Query: 185 SMVRGPNVDVSRELNEI--LSKRIT------------------LILQESLALINQLPRVN 224
+RG + D+S E NEI ++R+T L++ L ++ Q VN
Sbjct: 297 QRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFGGVN 356
Query: 225 IL-----DLFNRRNIR---------FVNVYIAFYSIGMGPIPWVIMFEIFPLNIKGPGGS 270
+ +F + V VY +S+GMG IPWVIM EIFP++IKG GS
Sbjct: 357 GIAFYASSIFESAGVSSKIGMIAMVVVQVYTGSFSLGMGGIPWVIMSEIFPIDIKGSAGS 416
Query: 271 LVTLVNWIGSWAISYSFILLMTW----------SSC---------------GRTLEEVQA 305
LVT+V+W+GSW IS++F LM W + C GRTLEE+Q
Sbjct: 417 LVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGATVIFVAKLVPETKGRTLEEIQY 476
Query: 306 SV 307
S+
Sbjct: 477 SI 478
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205019|emb|CBI34326.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 170/284 (59%), Gaps = 54/284 (19%)
Query: 1 MARKKDVESGNSNSSEPNVDRKNEY------GNVREPLID---------RKNQAKEQQNP 45
MA ++DVE GN ++P + +K E G + L+ P
Sbjct: 404 MATRQDVEKGNDTITKPLIGQKKEVQIQSNNGGLWVVLLSTLVAVCGSFEFGSCVGYSAP 463
Query: 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAAPL----------- 94
++GIM DL SY+EYS FGSILTIGA+IGAITSG+IAD++ RKGA +
Sbjct: 464 AEYGIMDDLGISYSEYSFFGSILTIGAMIGAITSGQIADFIGRKGAMGMSSMICIAGWFT 523
Query: 95 --LDFG-------RFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAY 145
L FG RFL G GIGV+SYVVPV+IAEITPKNLR ALAT NQLFIVTG AY
Sbjct: 524 VYLSFGSFSLYSGRFLLGYGIGVLSYVVPVFIAEITPKNLRGALATANQLFIVTGLFIAY 583
Query: 146 VIGALMSWRILALT----------GLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVS 195
VIGA+++WRILALT GLFFIPESPRWLA +G +EF+++L +RG + D+S
Sbjct: 584 VIGAIVTWRILALTGIVPCMVLLVGLFFIPESPRWLAKVGNEKEFKLSLQKLRGADADIS 643
Query: 196 RELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNV 239
E+ EI QE + LP+V I+DL ++NIR V V
Sbjct: 644 EEVAEI---------QEYIVTHELLPKVTIMDLLGKQNIRSVVV 678
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487967|ref|XP_002263811.2| PREDICTED: uncharacterized protein LOC100264207 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 170/284 (59%), Gaps = 54/284 (19%)
Query: 1 MARKKDVESGNSNSSEPNVDRKNEY------GNVREPLID---------RKNQAKEQQNP 45
MA ++DVE GN ++P + +K E G + L+ P
Sbjct: 1 MATRQDVEKGNDTITKPLIGQKKEVQIQSNNGGLWVVLLSTLVAVCGSFEFGSCVGYSAP 60
Query: 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAAPL----------- 94
++GIM DL SY+EYS FGSILTIGA+IGAITSG+IAD++ RKGA +
Sbjct: 61 AEYGIMDDLGISYSEYSFFGSILTIGAMIGAITSGQIADFIGRKGAMGMSSMICIAGWFT 120
Query: 95 --LDFG-------RFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAY 145
L FG RFL G GIGV+SYVVPV+IAEITPKNLR ALAT NQLFIVTG AY
Sbjct: 121 VYLSFGSFSLYSGRFLLGYGIGVLSYVVPVFIAEITPKNLRGALATANQLFIVTGLFIAY 180
Query: 146 VIGALMSWRILALT----------GLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVS 195
VIGA+++WRILALT GLFFIPESPRWLA +G +EF+++L +RG + D+S
Sbjct: 181 VIGAIVTWRILALTGIVPCMVLLVGLFFIPESPRWLAKVGNEKEFKLSLQKLRGADADIS 240
Query: 196 RELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNV 239
E+ EI QE + LP+V I+DL ++NIR V V
Sbjct: 241 EEVAEI---------QEYIVTHELLPKVTIMDLLGKQNIRSVVV 275
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30679397|ref|NP_187166.2| sugar transporter ERD6-like 8 [Arabidopsis thaliana] gi|117940178|sp|Q0WQ63.1|ERDL8_ARATH RecName: Full=Sugar transporter ERD6-like 8 gi|110737589|dbj|BAF00736.1| putative sugar transporter [Arabidopsis thaliana] gi|332640670|gb|AEE74191.1| sugar transporter ERD6-like 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 151/225 (67%), Gaps = 39/225 (17%)
Query: 45 PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAAPL---------- 94
PTQFGIM +L SY+++S+FGSIL +GA++GAITSG+I+D++ RKGA L
Sbjct: 58 PTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGAMRLSSVISAIGWL 117
Query: 95 ----------LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFA 144
LDFGRFL G G G +S+VVPV+IAEI+P+ LR ALAT+NQLFIV G
Sbjct: 118 IIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALATLNQLFIVIGLASM 177
Query: 145 YVIGALMSWRILALTGL----------FFIPESPRWLAMIGKNQEFEVALSMVRGPNVDV 194
++IGA+++WR LALTG+ +FIPESPRWL M+G++ +FE+AL +RGP ++
Sbjct: 178 FLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFEIALQKLRGPQANI 237
Query: 195 SRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNV 239
+RE EI QE LA + LP+ ++DL +++NIRFV V
Sbjct: 238 TREAGEI---------QEYLASLAHLPKATLMDLIDKKNIRFVIV 273
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6729025|gb|AAF27021.1|AC009177_11 putative sugar transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 151/225 (67%), Gaps = 39/225 (17%)
Query: 45 PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAAPL---------- 94
PTQFGIM +L SY+++S+FGSIL +GA++GAITSG+I+D++ RKGA L
Sbjct: 51 PTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGAMRLSSVISAIGWL 110
Query: 95 ----------LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFA 144
LDFGRFL G G G +S+VVPV+IAEI+P+ LR ALAT+NQLFIV G
Sbjct: 111 IIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALATLNQLFIVIGLASM 170
Query: 145 YVIGALMSWRILALTGL----------FFIPESPRWLAMIGKNQEFEVALSMVRGPNVDV 194
++IGA+++WR LALTG+ +FIPESPRWL M+G++ +FE+AL +RGP ++
Sbjct: 171 FLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFEIALQKLRGPQANI 230
Query: 195 SRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNV 239
+RE EI QE LA + LP+ ++DL +++NIRFV V
Sbjct: 231 TREAGEI---------QEYLASLAHLPKATLMDLIDKKNIRFVIV 266
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829028|ref|XP_002882396.1| sugar transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297328236|gb|EFH58655.1| sugar transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 150/225 (66%), Gaps = 39/225 (17%)
Query: 45 PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAAPL---------- 94
PTQFGIM +L SY+++S+FGSIL +GA++GAITSG+I+D++ RKGA L
Sbjct: 58 PTQFGIMEELNLSYSQFSVFGSILNVGAVLGAITSGKISDFIGRKGAMRLSSVISAIGWL 117
Query: 95 ----------LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFA 144
LDFGRFL G G G +S+VVPV+IAEI+P+ LR ALAT+NQLFIV G
Sbjct: 118 IIYFAKGDVPLDFGRFLTGFGCGTLSFVVPVFIAEISPRKLRGALATLNQLFIVIGLASM 177
Query: 145 YVIGALMSWRILALTGL----------FFIPESPRWLAMIGKNQEFEVALSMVRGPNVDV 194
++IGA+++WR LALTG+ +FIPESPRWL M+G++ +FE+AL +RGP+ ++
Sbjct: 178 FLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHHDFEIALQKLRGPHTNI 237
Query: 195 SRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNV 239
RE EI QE LA + LP+ + DL +++NIRFV V
Sbjct: 238 RREAEEI---------QEYLASLAHLPKATLWDLIDKKNIRFVIV 273
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 308 | ||||||
| TAIR|locus:2144975 | 482 | AT5G18840 "AT5G18840" [Arabido | 0.480 | 0.307 | 0.479 | 2e-59 | |
| TAIR|locus:2066400 | 463 | AT2G48020 [Arabidopsis thalian | 0.477 | 0.317 | 0.465 | 1.7e-56 | |
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.389 | 0.255 | 0.522 | 2.9e-53 | |
| TAIR|locus:2096219 | 470 | AT3G05150 [Arabidopsis thalian | 0.522 | 0.342 | 0.489 | 9e-49 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.363 | 0.234 | 0.467 | 4.7e-44 | |
| TAIR|locus:2036084 | 496 | ERD6 "EARLY RESPONSE TO DEHYDR | 0.376 | 0.233 | 0.460 | 1.1e-42 | |
| TAIR|locus:2146350 | 474 | SFP1 [Arabidopsis thaliana (ta | 0.350 | 0.227 | 0.491 | 1.4e-42 | |
| TAIR|locus:2036009 | 462 | AT1G08900 [Arabidopsis thalian | 0.409 | 0.272 | 0.445 | 3.3e-42 | |
| TAIR|locus:2138927 | 482 | AT4G04750 [Arabidopsis thalian | 0.353 | 0.226 | 0.453 | 4.3e-42 | |
| TAIR|locus:2092379 | 488 | AT3G20460 [Arabidopsis thalian | 0.448 | 0.282 | 0.420 | 6e-42 |
| TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 82/171 (47%), Positives = 107/171 (62%)
Query: 85 WVA---RKGAAPLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGA 141
W+A KGA LLD GRF G GIGV SYVVPVYIAEI+PKNLR L T+NQL IV G+
Sbjct: 125 WLAVFFTKGAL-LLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTTLNQLMIVIGS 183
Query: 142 LFAYVIGALMSWRILALTGL-------F---FIPESPRWLAMIGKNQEFEVALSMVRGPN 191
+++IG+L+SW+ LALTGL F FIPESPRWLA G +EF VAL +RG +
Sbjct: 184 SVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFRVALQKLRGKD 243
Query: 192 VDVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNVYIA 242
D++ E + I Q S+ + LP+ I DL +++ R V + ++
Sbjct: 244 ADITNEADGI---------QVSIQALEILPKARIQDLVSKKYGRSVIIGVS 285
|
|
| TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 1.7e-56, Sum P(3) = 1.7e-56
Identities = 80/172 (46%), Positives = 104/172 (60%)
Query: 85 WVA---RKGAAPLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGA 141
W+A KG L D GR G G+G SYVVP++IAEI PK R AL T+NQ+ I TG
Sbjct: 109 WLAIIFAKGVVAL-DLGRLATGYGMGAFSYVVPIFIAEIAPKTFRGALTTLNQILICTGV 167
Query: 142 LFAYVIGALMSWRILALTG----------LFFIPESPRWLAMIGKNQEFEVALSMVRGPN 191
+++IG L++WR+LAL G LFFIPESPRWLA +G++ EFE AL +RG
Sbjct: 168 SVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWLAKVGRDTEFEAALRKLRGKK 227
Query: 192 VDVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNVYIAF 243
D+S E EI Q+ + + +LP+ +LDLF RR IR +V IAF
Sbjct: 228 ADISEEAAEI---------QDYIETLERLPKAKMLDLFQRRYIR--SVLIAF 268
|
|
| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 322 (118.4 bits), Expect = 2.9e-53, Sum P(3) = 2.9e-53
Identities = 69/132 (52%), Positives = 88/132 (66%)
Query: 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALMSWR 154
LD GRFL G G+GV S+VVPVYIAEITPK LR TV+QL I G Y++G+ + WR
Sbjct: 125 LDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWR 184
Query: 155 ILALTG----------LFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEI--L 202
ILAL G LF IPESPRWLA +GK +EFE+AL +RG + D+S E NEI
Sbjct: 185 ILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFEIALQRLRGESADISYESNEIKDY 244
Query: 203 SKRITLILQESL 214
++R+T + + S+
Sbjct: 245 TRRLTDLSEGSI 256
|
|
| TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 9.0e-49, Sum P(3) = 9.0e-49
Identities = 91/186 (48%), Positives = 123/186 (66%)
Query: 89 KGAAPLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIG 148
KG PL DFGRFL G G G +S+VVPV+IAEI+P+ LR ALAT+NQLFIV G ++IG
Sbjct: 123 KGDVPL-DFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALATLNQLFIVIGLASMFLIG 181
Query: 149 ALMSWRILALTG------LFF----IPESPRWLAMIGKNQEFEVALSMVRGPNVDVSREL 198
A+++WR LALTG LFF IPESPRWL M+G++ +FE+AL +RGP +++RE
Sbjct: 182 AVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFEIALQKLRGPQANITREA 241
Query: 199 NEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFV--NVYIAFYSIGMGPIPWVIM 256
EI QE LA + LP+ ++DL +++NIRFV V + F+ +G I VI
Sbjct: 242 GEI---------QEYLASLAHLPKATLMDLIDKKNIRFVIVGVGLMFFQQFVG-INGVIF 291
Query: 257 F--EIF 260
+ +IF
Sbjct: 292 YAQQIF 297
|
|
| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 280 (103.6 bits), Expect = 4.7e-44, Sum P(3) = 4.7e-44
Identities = 58/124 (46%), Positives = 81/124 (65%)
Query: 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALMSWR 154
L+FGR +G G+G++SYVVPVYIAEI+PK++R NQL +G Y G ++WR
Sbjct: 128 LNFGRISSGIGLGLISYVVPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWR 187
Query: 155 ILALTG----------LFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELN--EIL 202
ILAL G LFF+PESPRWLA +G ++E E +L +RG N D+SRE + E++
Sbjct: 188 ILALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELENSLLRLRGGNADISREASDIEVM 247
Query: 203 SKRI 206
+K +
Sbjct: 248 TKMV 251
|
|
| TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 1.1e-42, Sum P(3) = 1.1e-42
Identities = 58/126 (46%), Positives = 77/126 (61%)
Query: 86 VARKGAAPLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAY 145
VA A LD GR L G G+G+ SYV+PVYIAEI PK++R + NQL G +
Sbjct: 142 VALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLMQNCGISLFF 201
Query: 146 VIGALMSWRILALTGL----------FFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVS 195
+IG + WR+L + GL FFIPESPRWLA +G+++E +L +RG +VD+S
Sbjct: 202 IIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGRDKECRSSLQRLRGSDVDIS 261
Query: 196 RELNEI 201
RE N I
Sbjct: 262 REANTI 267
|
|
| TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 276 (102.2 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 58/118 (49%), Positives = 75/118 (63%)
Query: 94 LLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALMSW 153
LL+FGR ++G G G+ SYVVPVYIAEITPK++R NQL G Y G ++W
Sbjct: 123 LLNFGRIISGIGFGLTSYVVPVYIAEITPKHVRGTFTFSNQLLQNAGLAMIYFCGNFITW 182
Query: 154 RILALTG----------LFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEI 201
R LAL G LFF+PESPRWLA +G ++E E +L +RG + D+SRE +EI
Sbjct: 183 RTLALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELENSLFRLRGRDADISREASEI 240
|
|
| TAIR|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 61/137 (44%), Positives = 79/137 (57%)
Query: 94 LLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALMSW 153
+L+ GR G G+G++SYVVPVYIAEITPK R + NQL G + G W
Sbjct: 117 MLNTGRLFLGFGVGLISYVVPVYIAEITPKTFRGGFSYSNQLLQCLGISLMFFTGNFFHW 176
Query: 154 RILALTG----------LFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEILS 203
R LAL LFFIPESPRWLAM G++QE EV+L +RG N D+ +E EI
Sbjct: 177 RTLALLSAIPSAFQVICLFFIPESPRWLAMYGQDQELEVSLKKLRGENSDILKEAAEI-R 235
Query: 204 KRITLILQESLALINQL 220
+ + + +ES + I L
Sbjct: 236 ETVEISRKESQSGIRDL 252
|
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| TAIR|locus:2138927 AT4G04750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 4.3e-42, Sum P(3) = 4.3e-42
Identities = 54/119 (45%), Positives = 73/119 (61%)
Query: 94 LLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALMSW 153
LLD GR L G +G+ SY+ P+YI+E+ P+NLR A +++ QLF+ G Y +G ++W
Sbjct: 128 LLDLGRLLQGISVGISSYLGPIYISELAPRNLRGAASSLMQLFVGVGLSAFYALGTAVAW 187
Query: 154 RILALTG----------LFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEIL 202
R LA+ G LFFIPESPRWLA +G+ +E E L +RG DVS E IL
Sbjct: 188 RSLAILGSIPSLVVLPLLFFIPESPRWLAKVGREKEVEGVLLSLRGAKSDVSDEAATIL 246
|
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| TAIR|locus:2092379 AT3G20460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 6.0e-42, Sum P(3) = 6.0e-42
Identities = 66/157 (42%), Positives = 85/157 (54%)
Query: 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALMSWR 154
LD GR G GV SYVVPVYI EI PK +R + +N L + Y++G+++SW+
Sbjct: 146 LDIGRLFLGVAAGVASYVVPVYIVEIAPKKVRGTFSAINSLVMCASVAVTYLLGSVISWQ 205
Query: 155 ILAL----------TGLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEILSK 204
LAL GLFFIPESPRWL+ G+ +E EV+L +RG N D+++E EI K
Sbjct: 206 KLALISTVPCVFEFVGLFFIPESPRWLSRNGRVKESEVSLQRLRGNNTDITKEAAEI--K 263
Query: 205 RITLILQESLALINQLPRVNILDLFNRRNIRFVNVYI 241
+ LQE DLFN R R V V I
Sbjct: 264 KYMDNLQE-------FKEDGFFDLFNPRYSRVVTVGI 293
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00006100001 | SubName- Full=Chromosome chr14 scaffold_164, whole genome shotgun sequence; (473 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 308 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-27 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-26 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 3e-16 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 4e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-09 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-08 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-08 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 4e-07 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-05 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 5e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-04 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 63/191 (32%), Positives = 91/191 (47%), Gaps = 40/191 (20%)
Query: 53 DLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARK-----------------GAAP-- 93
S L SI ++G +IG++ +G++ D RK G A
Sbjct: 40 ACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGK 99
Query: 94 ---LLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL 150
+L GR + G G+G +S +VP+YI+EI PK LR AL ++ QL I G L A +IG
Sbjct: 100 SFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLG 159
Query: 151 MS-----------------WRILALTGLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVD 193
++ IL L GL F+PESPRWL + GK +E L+ +RG + D
Sbjct: 160 LNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-D 218
Query: 194 VSRELNEILSK 204
V +E+ E
Sbjct: 219 VDQEIQEEKDS 229
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 62/233 (26%), Positives = 96/233 (41%), Gaps = 43/233 (18%)
Query: 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGA--------------- 91
+F S + + L SI +G IGA+ +G ++D RK +
Sbjct: 59 KFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILM 118
Query: 92 --------APLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALF 143
+L GR L G G+G+ S +VP+Y++EI PK LR AL ++ QL I G L
Sbjct: 119 GLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV 178
Query: 144 AYVI-----------------GALMSWRILALTGLFFIPESPRWLAMIGKNQEFEVALSM 186
AY G + L GLFF+PESPRWL G+ +E +L+
Sbjct: 179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLAR 238
Query: 187 VRGPNVDVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNV 239
+RG + + L+E+ I +++ + + R R
Sbjct: 239 LRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGS---LFSSTRRIRRRLFLG 288
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 3e-16
Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 55/186 (29%)
Query: 70 IGAIIGAITSGRIADWVARK----------------GAAPLLDFG--------------- 98
IG IIG G ++ R+ A P F
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI 125
Query: 99 -RFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALMS----- 152
R + G G+G+ S + P+YIAEI P ++R L + NQ I+ G L Y + ++
Sbjct: 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDA 185
Query: 153 -------WR----------ILALTGLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVS 195
WR +L L L+F+PE+PR+L GK ++ E L + G +
Sbjct: 186 SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN-TLAT 244
Query: 196 RELNEI 201
+ L EI
Sbjct: 245 QALQEI 250
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-12
Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 45/207 (21%)
Query: 63 LFGSILTIGAIIGAITSGRIADWVARK-----------------GAAP---LLDFGRFLA 102
L S +G ++G+ G ++D RK +P + R L
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190
Query: 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTG----ALFAYVIGALMSWRILAL 158
G GIG + V E PK RA + T+ Q+F G L AY + WR L L
Sbjct: 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY---FIPDWRWLQL 247
Query: 159 TG----------LFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEILSKRITL 208
+F+PESPRWL G+ +E L + N + ++ ++L
Sbjct: 248 AVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKK------LPAEVLSL 301
Query: 209 ILQESLALINQLPRVNILDLFNRRNIR 235
L++ L+ + + LDLF N+R
Sbjct: 302 SLEKDLSSSKKQY--SFLDLFRTPNLR 326
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-09
Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 24/144 (16%)
Query: 44 NPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARK-------------- 89
+P + DL S ++ L S ++G +G++ +G ++D R+
Sbjct: 19 SPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGS 78
Query: 90 ------GAAPLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALF 143
+ LL GRFL G G G + IAE P R + GAL
Sbjct: 79 LLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALL 138
Query: 144 AYVIGALM----SWRILALTGLFF 163
++G L+ WR L L
Sbjct: 139 GPLLGGLLAESLGWRWLFLILAIL 162
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 22/54 (40%), Positives = 39/54 (72%)
Query: 234 IRFVNVYIAFYSIGMGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSF 287
I F+ ++IAF+++G GP+PWVI+ EIFPL+++ G S+ NW+ ++ + + F
Sbjct: 386 IVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLF 439
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 21/54 (38%), Positives = 38/54 (70%)
Query: 234 IRFVNVYIAFYSIGMGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSF 287
I F+ ++IAF+++G GP+PWVI+ E+FPL ++ ++ T NW+ ++ I + F
Sbjct: 351 IVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLF 404
|
Length = 449 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 35/158 (22%)
Query: 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------- 92
I A+ + S IG GA+ G +AD + R+
Sbjct: 42 AISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCAL 101
Query: 93 ----PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVN----QLFIVTGALFA 144
L RFLAG G+G + + ++E PK R + + G A
Sbjct: 102 ATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA 161
Query: 145 YVIGALMSWRILALTG-----------LFFIPESPRWL 171
+ + WR L G + F+PES +L
Sbjct: 162 GWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFL 199
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 239 VYIAFYSIGMGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTWSS 295
Y+A +++ GP+ WV++ EIFP I+G ++ WI ++ +S++F ++ S
Sbjct: 372 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSW 428
|
Length = 479 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 5e-05
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 49/188 (26%)
Query: 53 DLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARK---------------------GA 91
DL + + G I+ +G ++GA G +AD + RK G
Sbjct: 196 DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGY 255
Query: 92 APLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFA------- 144
L F R L+G GIG +V Y AE + R + +F + G ++A
Sbjct: 256 GFFL-FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314
Query: 145 -------YVIGA---LMSWRIL----------ALTGLFFIPESPRWLAMIGKNQEFEVAL 184
+ +G+ SWR+ A+ L F+PESPR+ GK+ E + L
Sbjct: 315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMIL 374
Query: 185 SMVRGPNV 192
++ N+
Sbjct: 375 KLIHDTNM 382
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 25/186 (13%)
Query: 50 IMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARK-------------------- 89
+ DL S E L + ++G + +GR++D R+
Sbjct: 23 LAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA 82
Query: 90 GAAPLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLR----AALATVNQLFIVTGALFAY 145
+ LL R L G G G + IA+ P R L+ L G L
Sbjct: 83 SSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG 142
Query: 146 VIGALMSWR-ILALTGLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEILSK 204
++ +L WR + + + + ++ + + +L
Sbjct: 143 LLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRD 202
Query: 205 RITLIL 210
+ +L
Sbjct: 203 PVLWLL 208
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 308 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.96 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.94 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.93 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.93 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.92 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.89 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.88 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.88 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.87 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.85 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.85 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.83 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.82 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.79 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.79 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.78 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.78 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.75 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.75 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.75 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.73 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.72 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.72 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.71 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.7 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.7 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.69 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.69 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.69 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.68 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.67 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.66 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.66 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.65 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.64 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.64 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.64 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.63 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.62 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.61 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.61 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.6 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.59 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.59 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.59 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.59 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.58 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.56 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.56 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.56 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.55 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.54 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.54 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.53 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.53 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.52 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.52 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.51 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.51 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.51 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.49 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.49 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.48 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.48 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.48 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.47 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.47 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.47 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.47 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.46 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.44 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.42 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.4 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.38 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.38 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.34 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.33 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.31 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.31 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.31 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.31 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.28 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.21 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.21 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.19 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.18 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.17 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.12 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.12 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.11 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.08 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.05 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.01 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.01 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.95 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.95 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.9 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.9 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.9 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.88 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.88 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.87 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.8 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.75 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.72 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.72 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.69 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.69 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.65 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.64 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.64 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.63 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.61 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.6 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.58 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.57 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.57 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.56 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.55 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.53 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.53 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.52 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.5 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.49 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.46 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.44 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.44 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.42 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.4 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.39 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.39 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.38 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.36 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.35 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.34 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.32 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.31 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.31 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.3 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.26 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.26 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.24 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.24 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.23 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.23 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.21 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.2 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.2 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.19 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.19 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.18 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.17 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.16 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.13 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.12 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.12 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.11 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.08 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.07 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.06 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.05 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.05 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.05 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.05 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.04 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.03 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.0 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.0 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.99 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 97.99 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 97.97 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 97.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.92 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 97.92 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.91 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.9 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 97.9 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 97.89 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 97.88 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 97.88 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 97.85 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.84 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.83 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.83 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.79 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 97.72 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 97.72 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.72 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.71 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.71 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.7 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 97.7 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.68 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.66 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.64 | |
| PRK11043 | 401 | putative transporter; Provisional | 97.63 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 97.6 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 97.57 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.57 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 97.55 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.54 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 97.53 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 97.52 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.44 | |
| PRK10054 | 395 | putative transporter; Provisional | 97.42 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.42 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 97.41 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 97.41 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.38 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.33 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 97.27 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 97.26 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 97.26 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.19 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 96.98 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 96.94 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 96.89 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.81 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 96.77 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 96.76 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 96.75 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 96.74 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.65 | |
| PRK11462 | 460 | putative transporter; Provisional | 96.65 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.61 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.52 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 96.38 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 96.36 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 96.32 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 96.29 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 96.17 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 95.79 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 95.67 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 95.24 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 95.05 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.89 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 94.84 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 94.65 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 94.49 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 93.94 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 93.38 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 93.35 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 91.89 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 91.78 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 91.67 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 91.51 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.46 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 91.02 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 90.72 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 90.46 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 90.03 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 90.03 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 90.0 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 89.61 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 89.59 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 87.23 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 87.0 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 86.94 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 86.69 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 85.63 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 84.75 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 84.56 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=242.93 Aligned_cols=238 Identities=33% Similarity=0.566 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHHHHhhhhccccchhhhh
Q 048448 61 YSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFLAGCGIGVMSYVVPVYI 117 (308)
Q Consensus 61 ~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l~G~~~g~~~~~~~~~~ 117 (308)
.+.+.+++.+|.++|++..++++|++|||..+ .+++++|++.|+..|......+.|+
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 57788999999999999999999999999776 8899999999999999999999999
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHh----------hhcccccCchhHhh-cCChHHH
Q 048448 118 AEITPKNLRAALATVNQLFIVTGALFAYVIGALM------SWRILALT----------GLFFIPESPRWLAM-IGKNQEF 180 (308)
Q Consensus 118 ~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~------~w~~~~~~----------~~~~~~esp~~~~~-~~~~~~~ 180 (308)
.|..|.+.||....+.+.+.++|.+++..++.-- .|++.+.+ ...++||||+|++. ++++++|
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A 221 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEA 221 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHH
Confidence 9999999999999999999999999986665432 69887766 56899999999988 8999999
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH--hcCCccchhhccccchhhHH---------------------
Q 048448 181 EVALSMVRGPNVDVSRELNEILSKRITLILQESLALI--NQLPRVNILDLFNRRNIRFV--------------------- 237 (308)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~--------------------- 237 (308)
+++++++++.+.+.++..++. ...+++ ++.++.++.++++++..|+-
T Consensus 222 ~~sl~~y~G~~~~~~~~e~~~----------~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~ 291 (485)
T KOG0569|consen 222 RKALKFYRGKEDVEAEIEEML----------REIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFF 291 (485)
T ss_pred HHHHHHHhCCCcchhHHHHHH----------HHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHH
Confidence 999999998864333322222 222222 22367788999998777753
Q ss_pred --------------------------------------------------------------------------------
Q 048448 238 -------------------------------------------------------------------------------- 237 (308)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (308)
T Consensus 292 Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i 371 (485)
T KOG0569|consen 292 YSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCI 371 (485)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence
Q ss_pred ---HHHHHhhhccccccccceecccCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-------------------
Q 048448 238 ---NVYIAFYSIGMGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTWSS------------------- 295 (308)
Q Consensus 238 ---~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~------------------- 295 (308)
+++..+|++|.+|++|.+.+|+||++.|+.+.+++.+++|+.+++..+.||++.+..+
T Consensus 372 ~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~ 451 (485)
T KOG0569|consen 372 AAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLY 451 (485)
T ss_pred HHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 6777889999999999999999999999999999999999999999999999998777
Q ss_pred ------CCCCHHHHHhhcC
Q 048448 296 ------CGRTLEEVQASVS 308 (308)
Q Consensus 296 ------~g~~~~~~~~~~~ 308 (308)
|||+.+||.+.++
T Consensus 452 ~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 452 RYLPETKGRTPYEIIEELE 470 (485)
T ss_pred HhCcccCCCCHHHHHHHHH
Confidence 9999999988763
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=219.72 Aligned_cols=261 Identities=34% Similarity=0.564 Sum_probs=208.4
Q ss_pred cccccccccccccccC-----CCh--hHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------
Q 048448 40 KEQQNPTQFGIMADLK-----ESY--AEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------- 92 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~-----l~~--~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------- 92 (308)
.|+.+++...+.++.. .+. .+.+++.+...+|..+|++++|+++|++|||+++
T Consensus 63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~ 142 (513)
T KOG0254|consen 63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW 142 (513)
T ss_pred cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 6677777666666432 222 3458999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh--------
Q 048448 93 PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT-------- 159 (308)
Q Consensus 93 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~-------- 159 (308)
.+++++|++.|+|.|+...+.+.|++|..|++.||...++.+....+|.+++..++... +||..+.+
T Consensus 143 ~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~ 222 (513)
T KOG0254|consen 143 YQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVIL 222 (513)
T ss_pred HHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999998888777 59977666
Q ss_pred --hhcccccCchhHhhcCChHHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhccccchhhH
Q 048448 160 --GLFFIPESPRWLAMIGKNQEFEVALSMVRG-PNVDVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRF 236 (308)
Q Consensus 160 --~~~~~~esp~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (308)
..+++||||+|+.++++.+++++.+.++++ .+.+...+..++. .....+.........+.+++.+...++
T Consensus 223 ~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (513)
T KOG0254|consen 223 ALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLK-------IKLLVEAEVAEGKASWGELFSPKVRKR 295 (513)
T ss_pred HHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHH-------HHHHHhhhcccccccHHHhcCcchHHH
Confidence 557889999999999999999999999998 3344455544441 000001111111112333333222222
Q ss_pred H-------------------------------------------------------------------------------
Q 048448 237 V------------------------------------------------------------------------------- 237 (308)
Q Consensus 237 ~------------------------------------------------------------------------------- 237 (308)
.
T Consensus 296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~ 375 (513)
T KOG0254|consen 296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVI 375 (513)
T ss_pred HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Confidence 2
Q ss_pred --------------------------HHHHHhhhccccccccceecccCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 048448 238 --------------------------NVYIAFYSIGMGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLM 291 (308)
Q Consensus 238 --------------------------~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~~~~~~~ 291 (308)
++++.+|..+++|++|++.+|++|.+.|+++.+++..++|+.+++....++.+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~ 455 (513)
T KOG0254|consen 376 LAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFIT 455 (513)
T ss_pred HHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788999999999999999999999999999999999999999999999998
Q ss_pred Hhh--c-------------------------CCCCHHHHHhhc
Q 048448 292 TWS--S-------------------------CGRTLEEVQASV 307 (308)
Q Consensus 292 ~~~--~-------------------------~g~~~~~~~~~~ 307 (308)
... + ||+++||+++.|
T Consensus 456 ~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~ 498 (513)
T KOG0254|consen 456 EALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELF 498 (513)
T ss_pred HhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence 764 2 999999999976
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-30 Score=238.21 Aligned_cols=239 Identities=38% Similarity=0.653 Sum_probs=188.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHHHHhhhhccccchh
Q 048448 58 YAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFLAGCGIGVMSYVVP 114 (308)
Q Consensus 58 ~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l~G~~~g~~~~~~~ 114 (308)
..+.++..+...+|..+|++++|+++||+|||+.+ +.++++|++.|++.|+..++.+
T Consensus 45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34678999999999999999999999999999988 6788899999999999999999
Q ss_pred hhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----h---hHHHHHh----------hhcccccCchhHhhcCCh
Q 048448 115 VYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----S---WRILALT----------GLFFIPESPRWLAMIGKN 177 (308)
Q Consensus 115 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~---w~~~~~~----------~~~~~~esp~~~~~~~~~ 177 (308)
.++.|..|+++|+...++.+.+..+|.+++..++... + ||+.+.+ ...++||||+|+..+++.
T Consensus 125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~ 204 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRD 204 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccc
Confidence 9999999999999999999999999988887766543 4 9987766 457899999999999999
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhccccch-hhHH-------------------
Q 048448 178 QEFEVALSMVRGPNVDVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRRN-IRFV------------------- 237 (308)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~------------------- 237 (308)
+++++.++++++.+.. +++..+. ....++.++ .+..+.++++++. ++++
T Consensus 205 ~~A~~~l~~~~~~~~~-~~~~~~~---------~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 273 (451)
T PF00083_consen 205 EEAEKVLRKLRGKEIE-DEEIEEI---------KAEKKESQE-SKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIF 273 (451)
T ss_pred cccccccccccccccc-ccccccc---------ccccccccc-cceeeeecccccccccccccccccccccccccccccc
Confidence 9999999997654321 1111221 111111111 1133444444432 1111
Q ss_pred --------------------------------------------------------------------------------
Q 048448 238 -------------------------------------------------------------------------------- 237 (308)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (308)
T Consensus 274 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 353 (451)
T PF00083_consen 274 YYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIV 353 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence
Q ss_pred --HHHHHhhhccccccccceecccCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------
Q 048448 238 --NVYIAFYSIGMGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTWSS-------------------- 295 (308)
Q Consensus 238 --~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~-------------------- 295 (308)
.++..+++.+++++.+.+.+|+||++.|+++.|++..++++++++.++++|.+.+..+
T Consensus 354 ~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~ 433 (451)
T PF00083_consen 354 FLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVY 433 (451)
T ss_pred eeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhee
Confidence 2233455667788999999999999999999999999999999999999999887654
Q ss_pred ------CCCCHHHHHhhc
Q 048448 296 ------CGRTLEEVQASV 307 (308)
Q Consensus 296 ------~g~~~~~~~~~~ 307 (308)
||++++|+|+.|
T Consensus 434 ~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 434 FFLPETKGKTLEEIQEMF 451 (451)
T ss_pred EEEeeCCCCCHHHHHhhC
Confidence 999999999987
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=210.34 Aligned_cols=153 Identities=23% Similarity=0.227 Sum_probs=123.5
Q ss_pred ccCCccccccccccccccc-----cCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------
Q 048448 35 RKNQAKEQQNPTQFGIMAD-----LKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~-----~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------- 92 (308)
.++++.+..+...+.+..+ .+.++.+.+++.+.+.++.+++++++|+++||+|||+++
T Consensus 27 ~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~ 106 (502)
T TIGR00887 27 TDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS 106 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 5666666666555555443 345667789999999999999999999999999999887
Q ss_pred ---------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh-------------
Q 048448 93 ---------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL------------- 150 (308)
Q Consensus 93 ---------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~------------- 150 (308)
..++++|++.|++.|...+..+.+++|++|+++|++..++.+.+..+|.++++.++..
T Consensus 107 ~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 186 (502)
T TIGR00887 107 PGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAA 186 (502)
T ss_pred cCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 1467889999999999999999999999999999999999999999888887766432
Q ss_pred --------------hhhHHHHHh----------hhcccccCchhHhhcCChH-HHHHHHHHh
Q 048448 151 --------------MSWRILALT----------GLFFIPESPRWLAMIGKNQ-EFEVALSMV 187 (308)
Q Consensus 151 --------------~~w~~~~~~----------~~~~~~esp~~~~~~~~~~-~~~~~l~~~ 187 (308)
.+||+++.+ ..+++||||+|+..+++.+ ++++.+++.
T Consensus 187 ~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~ 248 (502)
T TIGR00887 187 DEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAV 248 (502)
T ss_pred ccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence 159998876 3457899999999887764 466555554
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=197.80 Aligned_cols=156 Identities=28% Similarity=0.471 Sum_probs=131.2
Q ss_pred ccCCcccccccccccccccc--------CCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------
Q 048448 35 RKNQAKEQQNPTQFGIMADL--------KESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~--------~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------- 92 (308)
.++++.+..++..+.+++++ +.++.+.+++.+++.++.+++++++|+++||+|||+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~ 102 (479)
T PRK10077 23 LFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGS 102 (479)
T ss_pred hcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 56777777777666666655 88889999999999999999999999999999999987
Q ss_pred ------------------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh----
Q 048448 93 ------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL---- 150 (308)
Q Consensus 93 ------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~---- 150 (308)
..++++|++.|++.|+..+...++++|++|+++|++++++.+.+..+|.++++.++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~ 182 (479)
T PRK10077 103 AWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARS 182 (479)
T ss_pred HhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0246889999999999999999999999999999999999999999999888766432
Q ss_pred --------hhhHHHHHh----------hhcccccCchhHhhcCChHHHHHHHHHhcCC
Q 048448 151 --------MSWRILALT----------GLFFIPESPRWLAMIGKNQEFEVALSMVRGP 190 (308)
Q Consensus 151 --------~~w~~~~~~----------~~~~~~esp~~~~~~~~~~~~~~~l~~~~~~ 190 (308)
.+||+.|++ ..+++||+|+|+..+++.+++++.+++..+.
T Consensus 183 ~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~ 240 (479)
T PRK10077 183 GDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN 240 (479)
T ss_pred CcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCC
Confidence 379998876 3567899999988888877777766666543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=201.23 Aligned_cols=144 Identities=28% Similarity=0.426 Sum_probs=130.3
Q ss_pred cccccccccCCC---hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHH
Q 048448 46 TQFGIMADLKES---YAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLA 102 (308)
Q Consensus 46 ~~~~l~~~~~l~---~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~ 102 (308)
..+.+.+|+|++ +.+.+++.+++.+|.++|+++.|+++||+|||+++ +.+++.|++.
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~ 190 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 456799999998 89999999999999999999999999999999988 6788899999
Q ss_pred HhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHh----------hhcccccCchhH
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-SWRILALT----------GLFFIPESPRWL 171 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-~w~~~~~~----------~~~~~~esp~~~ 171 (308)
|++.+...+....++.|++|+++|+...++.+.+..+|.++++.++..+ +||+.+++ ..+++||+|+|+
T Consensus 191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l 270 (505)
T TIGR00898 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWL 270 (505)
T ss_pred HhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 9999999999999999999999999999999999999999999888766 79988776 346789999999
Q ss_pred hhcCChHHHHHHHHHhcC
Q 048448 172 AMIGKNQEFEVALSMVRG 189 (308)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~ 189 (308)
..+++.+++.+.+++..+
T Consensus 271 ~~~~~~~~a~~~l~~~~~ 288 (505)
T TIGR00898 271 ISQGRIEEALKILQRIAK 288 (505)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999988888777654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-23 Score=195.15 Aligned_cols=156 Identities=27% Similarity=0.404 Sum_probs=136.2
Q ss_pred cCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHH
Q 048448 36 KNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLL 95 (308)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~ 95 (308)
++......+...|.+.++++++..+.+++.+++++|.++|++++|+++||+|||+++ +.+
T Consensus 179 ~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~l 258 (742)
T TIGR01299 179 DGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFF 258 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444455566677889999999999999999999999999999999999999999988 678
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----------------hhHHHHH
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----------------SWRILAL 158 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----------------~w~~~~~ 158 (308)
+++|++.|++.|+..++..++++|++|++.|+...++++.+..+|.++++.++..+ +||++++
T Consensus 259 lv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~ 338 (742)
T TIGR01299 259 LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVI 338 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHH
Confidence 88999999999999999999999999999999999999999999988887654322 5888776
Q ss_pred h----------hhcccccCchhHhhcCChHHHHHHHHHhcCCC
Q 048448 159 T----------GLFFIPESPRWLAMIGKNQEFEVALSMVRGPN 191 (308)
Q Consensus 159 ~----------~~~~~~esp~~~~~~~~~~~~~~~l~~~~~~~ 191 (308)
+ ..+++||||+|+..+++.+++.+.++++++.|
T Consensus 339 i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 339 VCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 6 44678999999999999999999998887554
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-22 Score=168.49 Aligned_cols=143 Identities=24% Similarity=0.293 Sum_probs=126.1
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhh
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGI 106 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~ 106 (308)
.+.+...++.+..+..+++...+.|+.+++..+|.++|++|||+.+ ..+++.|.+.|+|.
T Consensus 101 ~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~ 180 (528)
T KOG0253|consen 101 LPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGV 180 (528)
T ss_pred HHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccC
Confidence 3456677888889999999999999999999999999999999988 78899999999999
Q ss_pred hccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh----------hhcccccCchhHh
Q 048448 107 GVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT----------GLFFIPESPRWLA 172 (308)
Q Consensus 107 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~----------~~~~~~esp~~~~ 172 (308)
|+ .|...++-.|..|..+|...+... ..+.+|......++... +|||..+. ..+++|||||+++
T Consensus 181 gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~ 258 (528)
T KOG0253|consen 181 GG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYL 258 (528)
T ss_pred CC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhh
Confidence 98 888889999999999999888877 88899988887777664 89987665 5688999999999
Q ss_pred hcCChHHHHHHHHHhcCCC
Q 048448 173 MIGKNQEFEVALSMVRGPN 191 (308)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~ 191 (308)
.+++.+++.+.++++...|
T Consensus 259 ~~G~~~kAletL~kiArmN 277 (528)
T KOG0253|consen 259 AKGDDYKALETLHKIARMN 277 (528)
T ss_pred hcCChHHHHHHHHHHHHhc
Confidence 9999999999998886554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=176.83 Aligned_cols=154 Identities=37% Similarity=0.583 Sum_probs=128.6
Q ss_pred ccCCccccccccccccccccCCC--------hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLKES--------YAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~--------~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------- 92 (308)
..+.+.+...+..+.+..+++++ ..+.+++.+++.++..+++++.|+++||+|||+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 118 (481)
T TIGR00879 39 MFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILM 118 (481)
T ss_pred hcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34555555666666777777666 88999999999999999999999999999999987
Q ss_pred ---------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHh---hh----hhhHHH
Q 048448 93 ---------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIG---AL----MSWRIL 156 (308)
Q Consensus 93 ---------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~---~~----~~w~~~ 156 (308)
+.++++|++.|++.+...+....++.|++|+++|+++.++.+.+..+|.++++.++ .. .+||+.
T Consensus 119 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~ 198 (481)
T TIGR00879 119 GLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP 198 (481)
T ss_pred HHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHH
Confidence 26888999999999999999999999999999999999999999999999999988 33 389988
Q ss_pred HHh----------hhcccccCchhHhhcCChHHHHHHHHHhc
Q 048448 157 ALT----------GLFFIPESPRWLAMIGKNQEFEVALSMVR 188 (308)
Q Consensus 157 ~~~----------~~~~~~esp~~~~~~~~~~~~~~~l~~~~ 188 (308)
+++ ..+++||+|+++..+++.++.++..++..
T Consensus 199 f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (481)
T TIGR00879 199 LGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLR 240 (481)
T ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHh
Confidence 766 45678999998877766666555555443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-21 Score=178.95 Aligned_cols=230 Identities=24% Similarity=0.306 Sum_probs=168.6
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhcccc
Q 048448 52 ADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSY 111 (308)
Q Consensus 52 ~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~ 111 (308)
+..+.+.....+..+++++|.++|++++|+++|++|||+++ +.+++.|++.|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 44566788889999999999999999999999999999999 8899999999999999999
Q ss_pred chhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHH-hhhh-hhHHHHHh----------hhcccccCchhHhhcCChHH
Q 048448 112 VVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVI-GALM-SWRILALT----------GLFFIPESPRWLAMIGKNQE 179 (308)
Q Consensus 112 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l-~~~~-~w~~~~~~----------~~~~~~esp~~~~~~~~~~~ 179 (308)
+..++++|+.++++|+....+ ......++.+++.+ +... +||+.+++ ..+..||||||+..+++.++
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~ 269 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDE 269 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHH
Confidence 999999999999999999999 44444444444444 4444 89998887 22445599999999999999
Q ss_pred HHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhccccchhhHH-------------------
Q 048448 180 FEVALSMVRGPN---VDVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFV------------------- 237 (308)
Q Consensus 180 ~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------- 237 (308)
+.+.++++.+.| ........+.. ...........+...+.++++.++++..
T Consensus 270 a~~~l~~~a~~n~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~ 342 (521)
T KOG0255|consen 270 AIKILKKIAKLNGRKLSVKELLRLEL-------LLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLS 342 (521)
T ss_pred HHHHHHHHHhhcCCCCCcHHHHHHHH-------HhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 999999986543 22222211110 0111111122233557777777644433
Q ss_pred ---------------------------------------------------------------------HHHH--Hhhhc
Q 048448 238 ---------------------------------------------------------------------NVYI--AFYSI 246 (308)
Q Consensus 238 ---------------------------------------------------------------------~~~~--~~~~~ 246 (308)
...+ ++.+.
T Consensus 343 ~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (521)
T KOG0255|consen 343 LNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGS 422 (521)
T ss_pred hhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 0001 11111
Q ss_pred cccccccceecccCCCCchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 048448 247 GMGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILL 290 (308)
Q Consensus 247 g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~~~~~~ 290 (308)
++ .+.+.+.+|++|+..|..+.+.+...+.++++++|++....
T Consensus 423 ~~-~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~ 465 (521)
T KOG0255|consen 423 AF-NLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLL 465 (521)
T ss_pred HH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23477899999999999999999999999999999887544
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-22 Score=173.46 Aligned_cols=137 Identities=21% Similarity=0.195 Sum_probs=108.1
Q ss_pred ccCCccccccccccccccc--------cCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------
Q 048448 35 RKNQAKEQQNPTQFGIMAD--------LKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~--------~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------- 92 (308)
.|++++...+...+-+... -++++...+.+..+.++|.++|++++||+.|++|||+++
T Consensus 52 tDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~ 131 (538)
T KOG0252|consen 52 TDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALS 131 (538)
T ss_pred ccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHh
Confidence 5555555554433333322 125677789999999999999999999999999999998
Q ss_pred -------------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh--------
Q 048448 93 -------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-------- 151 (308)
Q Consensus 93 -------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-------- 151 (308)
.++.+.|+++|+|.|+-+|...+.++|...++.||...++.-.....|.+.+.+++..+
T Consensus 132 ~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~ 211 (538)
T KOG0252|consen 132 GLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIF 211 (538)
T ss_pred ccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccC
Confidence 77888999999999999999999999999999999998887666666666655554432
Q ss_pred -----------hhHHHHHh----------hhcccccCchhH
Q 048448 152 -----------SWRILALT----------GLFFIPESPRWL 171 (308)
Q Consensus 152 -----------~w~~~~~~----------~~~~~~esp~~~ 171 (308)
-||..+.+ ..+.+|||+++-
T Consensus 212 ~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 212 NGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT 252 (538)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence 49988866 346789999885
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=166.46 Aligned_cols=129 Identities=18% Similarity=0.150 Sum_probs=112.5
Q ss_pred cccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHH
Q 048448 42 QQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFL 101 (308)
Q Consensus 42 ~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l 101 (308)
..++..|.+.+|+|+++.+.+++.+++.+++.+++++.|+++||+|||+++ ..++++|++
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 88 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLL 88 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999877 477888999
Q ss_pred HHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh-----------hhccccc
Q 048448 102 AGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT-----------GLFFIPE 166 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~-----------~~~~~~e 166 (308)
.|++.+. .......++|++|+++|++++++.+.+..+|.++++.++..+ +||+.|++ ..+++||
T Consensus 89 ~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 89 AALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred HHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999985 455666679999999999999999999999999988887776 99998866 3457899
Q ss_pred CchhH
Q 048448 167 SPRWL 171 (308)
Q Consensus 167 sp~~~ 171 (308)
+|++.
T Consensus 168 ~p~~~ 172 (368)
T TIGR00903 168 LPFQA 172 (368)
T ss_pred CCCCC
Confidence 98763
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-20 Score=166.40 Aligned_cols=138 Identities=20% Similarity=0.186 Sum_probs=119.7
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HH
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PL 94 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~ 94 (308)
.+.......++..+.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++ +.
T Consensus 23 ~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (405)
T TIGR00891 23 LDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYIT 102 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 5566666667777899999999999999999999999999999999999999999988 67
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----h--hHHHHHh---------
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----S--WRILALT--------- 159 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~--w~~~~~~--------- 159 (308)
+++.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|..+++.+...+ + ||+.+++
T Consensus 103 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 103 MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999998888876654 4 9988876
Q ss_pred -hhcccccCchhHh
Q 048448 160 -GLFFIPESPRWLA 172 (308)
Q Consensus 160 -~~~~~~esp~~~~ 172 (308)
....+||++.+..
T Consensus 183 ~~~~~~~~~~~~~~ 196 (405)
T TIGR00891 183 WLRKNIPEAEDWKE 196 (405)
T ss_pred HHHHhCCCChhHHH
Confidence 2345688876543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-20 Score=170.69 Aligned_cols=130 Identities=16% Similarity=0.211 Sum_probs=113.5
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHH
Q 048448 40 KEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGR 99 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r 99 (308)
....+...+.+.+++|+++.+.+++.+++.+++.+++++.|+++||+|||+++ +.+++.|
T Consensus 24 ~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 103 (412)
T TIGR02332 24 RINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLR 103 (412)
T ss_pred hhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33334445589999999999999999999999999999999999999999988 6788999
Q ss_pred HHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh----------hhhHHHHHh----------
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL----------MSWRILALT---------- 159 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~----------~~w~~~~~~---------- 159 (308)
++.|++.+...+....++.|++|+++|++.+++++.+..+|..+++.++.. .+||+.|++
T Consensus 104 ~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~ 183 (412)
T TIGR02332 104 ILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGV 183 (412)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999998999999999999999999999999998888877654 289999877
Q ss_pred -hhcccccCch
Q 048448 160 -GLFFIPESPR 169 (308)
Q Consensus 160 -~~~~~~esp~ 169 (308)
..+++||+|+
T Consensus 184 ~~~~~~~~~p~ 194 (412)
T TIGR02332 184 MTWFWLDDSPD 194 (412)
T ss_pred HHhhccCCCcc
Confidence 3356789884
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-19 Score=160.06 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=105.7
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHH
Q 048448 44 NPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAG 103 (308)
Q Consensus 44 ~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G 103 (308)
+...|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++ +.++++|++.|
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 93 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLG 93 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 4445678999999999999999999999999999999999999999987 67788999999
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++.+...+....++.|++|+++|++..++.+....+|.++++.++..+ +||+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 153 (399)
T TIGR00893 94 AAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII 153 (399)
T ss_pred HHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 999999999999999999999999999999999999999998887764 89988765
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=162.75 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=108.6
Q ss_pred ccCCccccccccccccccccCCChhH----HHH--HHHHHHHHHHHHHHHHhhhhhcccccchH----------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAE----YSL--FGSILTIGAIIGAITSGRIADWVARKGAA---------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~----~~~--~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------- 92 (308)
.|.++.+..+...+.+.++++.+.+. .+. +.++.++++.+|++++|+++||+|||+++
T Consensus 27 ~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~ 106 (490)
T PRK10642 27 MEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGL 106 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666788887543321 222 25788899999999999999999999998
Q ss_pred ----H--------HHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhh-----------
Q 048448 93 ----P--------LLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGA----------- 149 (308)
Q Consensus 93 ----~--------~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~----------- 149 (308)
. .++++|+++|++.|+.++....+++|++|+++||+..++.+.+..+|..+++.+..
T Consensus 107 ~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~ 186 (490)
T PRK10642 107 IPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANF 186 (490)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHh
Confidence 1 37889999999999999999999999999999999999998888777777654432
Q ss_pred -hhhhHHHHHh----------hhcccccCchhHhh
Q 048448 150 -LMSWRILALT----------GLFFIPESPRWLAM 173 (308)
Q Consensus 150 -~~~w~~~~~~----------~~~~~~esp~~~~~ 173 (308)
..+||+.|++ ....+||+|+|...
T Consensus 187 ~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~ 221 (490)
T PRK10642 187 LDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQH 221 (490)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHH
Confidence 2389999887 22468999998643
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-19 Score=160.32 Aligned_cols=138 Identities=23% Similarity=0.298 Sum_probs=118.9
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HH
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PL 94 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~ 94 (308)
.++.+....+...|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++ +.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (406)
T PRK11551 26 LEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPS 105 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHH
Confidence 4555555556667789999999999999999999999999999999999999999988 67
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh-----------
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT----------- 159 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~----------- 159 (308)
+++.|++.|++.+...+....++.|++|+++|++.+++.+.+..+|..+++.++..+ +||+.+++
T Consensus 106 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 106 LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999988877554 79987765
Q ss_pred hhcccccCchhHh
Q 048448 160 GLFFIPESPRWLA 172 (308)
Q Consensus 160 ~~~~~~esp~~~~ 172 (308)
...++||+|++..
T Consensus 186 ~~~~l~~~~~~~~ 198 (406)
T PRK11551 186 LMRWLPESRAFAQ 198 (406)
T ss_pred HHHhCCCChhHHh
Confidence 2345789887643
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=159.43 Aligned_cols=125 Identities=22% Similarity=0.208 Sum_probs=112.3
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HH
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PL 94 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~ 94 (308)
.+++......+..+.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++ +.
T Consensus 29 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 108 (426)
T PRK12307 29 FDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIM 108 (426)
T ss_pred HHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4566666667778889999999999999999999999999999999999999999988 67
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++++|++.|++.|..++....++.|++|+++|+++.++.+.+..+|.++++.+...+ +||+.+++
T Consensus 109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 109 LTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 888999999999999999999999999999999999999999999998888776543 89998876
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=153.65 Aligned_cols=135 Identities=18% Similarity=0.128 Sum_probs=101.4
Q ss_pred cCCccccccccccccccccC---CChhHHHH---HHHHHHHHHHHHHHHHhhhhhcccccchH-----------------
Q 048448 36 KNQAKEQQNPTQFGIMADLK---ESYAEYSL---FGSILTIGAIIGAITSGRIADWVARKGAA----------------- 92 (308)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~---l~~~~~~~---~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------- 92 (308)
|.++....+...+.+.++++ .+..+.+. +.++.+++..+|++++|+++||+|||+++
T Consensus 34 ~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~ 113 (432)
T PRK10406 34 EWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL 113 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444455567888874 45554444 44455566669999999999999999988
Q ss_pred --H---------HHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhh------------
Q 048448 93 --P---------LLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGA------------ 149 (308)
Q Consensus 93 --~---------~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~------------ 149 (308)
. .++++|+++|++.|+.++...++++|++|+++|++..++.+.+...|.++++.+..
T Consensus 114 ~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 193 (432)
T PRK10406 114 PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELR 193 (432)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh
Confidence 1 47889999999999999999999999999999999999988887777777655422
Q ss_pred hhhhHHHHHh----------hhcccccCchh
Q 048448 150 LMSWRILALT----------GLFFIPESPRW 170 (308)
Q Consensus 150 ~~~w~~~~~~----------~~~~~~esp~~ 170 (308)
..+||+.|++ ....+||+|++
T Consensus 194 ~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~ 224 (432)
T PRK10406 194 EWGWRIPFALGAVLAVVALWLRRQLDETSQQ 224 (432)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 2489999877 22346777765
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-18 Score=154.28 Aligned_cols=139 Identities=24% Similarity=0.279 Sum_probs=117.6
Q ss_pred cCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHH
Q 048448 36 KNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLL 95 (308)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~ 95 (308)
++..........|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++ +.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (398)
T TIGR00895 29 DGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQL 108 (398)
T ss_pred HHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 344444555667888999999999999999999999999999999999999999988 667
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh-----------h
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT-----------G 160 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~-----------~ 160 (308)
++.|++.|++.+...+....++.|++|+++|++..++.+.+..+|..+++.+...+ +|+..+++ .
T Consensus 109 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 188 (398)
T TIGR00895 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLL 188 (398)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999998888877654 77765544 3
Q ss_pred hcccccCchhHhhc
Q 048448 161 LFFIPESPRWLAMI 174 (308)
Q Consensus 161 ~~~~~esp~~~~~~ 174 (308)
..++||++++...+
T Consensus 189 ~~~~~~~~~~~~~~ 202 (398)
T TIGR00895 189 MRFLPESIDFLVSK 202 (398)
T ss_pred HHhCCCCChHHHhc
Confidence 45678888765544
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-18 Score=153.77 Aligned_cols=116 Identities=12% Similarity=0.014 Sum_probs=102.7
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHH
Q 048448 44 NPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAG 103 (308)
Q Consensus 44 ~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G 103 (308)
+...|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++ +.+++.|++.|
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 94 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNG 94 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445688899999999999999999999999999999999999999988 67888999999
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHH-HHhhh----hhhHHHHHh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAY-VIGAL----MSWRILALT 159 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~-~l~~~----~~w~~~~~~ 159 (308)
++.+...+....++.|++|+++|++..++.+.+..+|..+++ .++.. .+||+.+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 95 IFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 999999999999999999999999999999999889888887 34433 288887765
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=151.06 Aligned_cols=118 Identities=22% Similarity=0.167 Sum_probs=94.2
Q ss_pred CCChhHHHHHH-----HHHHHHHHHHHHHHhhhhhcccccchH--------------------H--------HHHHHHHH
Q 048448 55 KESYAEYSLFG-----SILTIGAIIGAITSGRIADWVARKGAA--------------------P--------LLDFGRFL 101 (308)
Q Consensus 55 ~l~~~~~~~~~-----s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~--------~~~~~r~l 101 (308)
++++. .+++. ++.+++..+|+++.|+++||+|||+++ . .++++|++
T Consensus 56 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 134 (438)
T PRK09952 56 QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAI 134 (438)
T ss_pred CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 55555 34443 345677889999999999999999988 1 47889999
Q ss_pred HHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhh------------hhhhHHHHHh----------
Q 048448 102 AGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGA------------LMSWRILALT---------- 159 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~------------~~~w~~~~~~---------- 159 (308)
+|++.|+.++....++.|++|+++|++..+..+.+..+|.+++..+.. ..+||+.|++
T Consensus 135 ~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~ 214 (438)
T PRK09952 135 QGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALW 214 (438)
T ss_pred HHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888765432 2489998877
Q ss_pred hhcccccCchhHhh
Q 048448 160 GLFFIPESPRWLAM 173 (308)
Q Consensus 160 ~~~~~~esp~~~~~ 173 (308)
.....||+|+|...
T Consensus 215 l~~~~~es~~~~~~ 228 (438)
T PRK09952 215 VRNGMEESAEFEQQ 228 (438)
T ss_pred HHHhCCCChhHHHH
Confidence 12346888887543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-17 Score=149.95 Aligned_cols=127 Identities=14% Similarity=0.109 Sum_probs=110.6
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHH
Q 048448 44 NPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAG 103 (308)
Q Consensus 44 ~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G 103 (308)
+...|.+.+++|+++.+.+++.+++.+++.+++++.|+++||+|||+++ +.+++.|++.|
T Consensus 43 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 122 (434)
T PRK11663 43 NAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNA 122 (434)
T ss_pred HHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4456788899999999999999999999999999999999999999987 56777899999
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh-----------hhcccccCc
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT-----------GLFFIPESP 168 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~-----------~~~~~~esp 168 (308)
++.|...+....++.|++|+++|++.+++.+.+..+|..+++.+...+ +||+.+++ ..++++|+|
T Consensus 123 ~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p 202 (434)
T PRK11663 123 FFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKP 202 (434)
T ss_pred HHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 999988899999999999999999999999999999998888776654 89988866 223567877
Q ss_pred hh
Q 048448 169 RW 170 (308)
Q Consensus 169 ~~ 170 (308)
.+
T Consensus 203 ~~ 204 (434)
T PRK11663 203 QA 204 (434)
T ss_pred hh
Confidence 54
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=144.24 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=106.2
Q ss_pred ccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHH
Q 048448 43 QNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLA 102 (308)
Q Consensus 43 ~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~ 102 (308)
..+..|.+.+++|+++.+.+++.+++.+++.+++++.|++.||+|||+++ +.++++|++.
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~ 107 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGI 107 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34557889999999999999999999999999999999999999999988 6788899999
Q ss_pred HhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
|++.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+ +||+.|++
T Consensus 108 G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 168 (390)
T PRK03545 108 AFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA 168 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence 9999888889999999999999999999999999999988888877654 89998877
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=144.79 Aligned_cols=226 Identities=18% Similarity=0.206 Sum_probs=168.2
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHHHHhhhhc
Q 048448 51 MADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFLAGCGIGV 108 (308)
Q Consensus 51 ~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l~G~~~g~ 108 (308)
..+++.++.+.+++.+.+++|+++++++.|++.||+|-|+++ +.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 567899999999999999999999999999999999999988 5678999999999999
Q ss_pred cccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh-----------hhcccccCchhHh
Q 048448 109 MSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT-----------GLFFIPESPRWLA 172 (308)
Q Consensus 109 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~-----------~~~~~~esp~~~~ 172 (308)
.+++.....+.|+|+++|++..++...+..+|.++...+++.+ ||+.+|++ ..++..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-- 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-- 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc--
Confidence 9999999999999999999999999999999988877666654 89999998 12334455532
Q ss_pred hcCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcC--CccchhhccccchhhHHHHHHHhhhcccc-
Q 048448 173 MIGKNQEFEVALSMVRGPNVDVSRELNEILSKRITLILQESLALINQL--PRVNILDLFNRRNIRFVNVYIAFYSIGMG- 249 (308)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~g~~- 249 (308)
++. ...+|.+.+ +.....+... ...+++++++++..+...+-.++...+..
T Consensus 223 -h~~----------------is~~El~~I---------~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~ 276 (466)
T KOG2532|consen 223 -HPN----------------ISEKELKYI---------EKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYL 276 (466)
T ss_pred -CCC----------------CCHHHHHHH---------HhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 111 111111122 2111111111 57889999999998877333333332221
Q ss_pred ---ccccceecccCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHhhc
Q 048448 250 ---PIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTWSS-CGRTLEEVQASV 307 (308)
Q Consensus 250 ---~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~-~g~~~~~~~~~~ 307 (308)
..+- |..|...-+++.+ |+.+++.++..++.-++.+.+.|.+. |+.|.+...+.|
T Consensus 277 l~~y~Pt-Y~~~VL~f~v~~~--G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkif 335 (466)
T KOG2532|consen 277 LLTYLPT-YLKEVLGFDVRET--GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIF 335 (466)
T ss_pred HHHHhhH-HHHHHhCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHH
Confidence 1222 5667766666665 88889999999999999999999886 456666655543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-17 Score=152.22 Aligned_cols=115 Identities=17% Similarity=-0.002 Sum_probs=101.2
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------------HHHHHHH
Q 048448 45 PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------------PLLDFGR 99 (308)
Q Consensus 45 ~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------------~~~~~~r 99 (308)
...|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|||+++ +.+++.|
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 129 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALW 129 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 446689999999999999999999999999999999999999999975 4677889
Q ss_pred HHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHh
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-------SWRILALT 159 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-------~w~~~~~~ 159 (308)
++.|++.+...+....+++|++|+++||+++++++.+..+|.++++.+.... +||..+.+
T Consensus 130 ~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~ 196 (467)
T PRK09556 130 ALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIF 196 (467)
T ss_pred HHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHH
Confidence 9999999999999999999999999999999999999999988887765432 47765544
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=142.66 Aligned_cols=115 Identities=13% Similarity=0.056 Sum_probs=99.6
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHH
Q 048448 44 NPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAG 103 (308)
Q Consensus 44 ~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G 103 (308)
++..|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++ +.++++|++.|
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 102 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLAS 102 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999999999999999988 67888999999
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++.+..++.....+.+++| ++|+++.++...+..+|..+++.+...+ +||+.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 103 AGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 9999888888888888887 5799999999999888877654443332 79988876
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=148.96 Aligned_cols=125 Identities=19% Similarity=0.161 Sum_probs=111.6
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HH
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PL 94 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~ 94 (308)
.+..+.+..++..+.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++ +.
T Consensus 31 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (496)
T PRK03893 31 LDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWT 110 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4555566666777889999999999999999999999999999999999999999987 66
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+++.|++.|++.+...+....++.|.+|+++|++..++...+..+|..+++.+...+ +||+.+++
T Consensus 111 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~ 179 (496)
T PRK03893 111 LFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI 179 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 788999999999999999999999999999999999999999999999888877665 89988766
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-17 Score=144.92 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=112.3
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHh
Q 048448 45 PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGC 104 (308)
Q Consensus 45 ~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~ 104 (308)
.+.|++.++.++|.+|.|.+.+++++.+.++-++.|.++||.++|+.+ ..+.+.-++.|.
T Consensus 50 ~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~ 129 (448)
T COG2271 50 LAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGW 129 (448)
T ss_pred hccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999988 667777889999
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHh--hhh----hhHHHHHh-----------hhcccccC
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIG--ALM----SWRILALT-----------GLFFIPES 167 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~--~~~----~w~~~~~~-----------~~~~~~es 167 (308)
..|...|.+...++.|+|+++||+..++++++.++|..+.+.+. ..+ +||..|++ .++..+|+
T Consensus 130 fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 130 FQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998887777 443 89999988 44566777
Q ss_pred chh
Q 048448 168 PRW 170 (308)
Q Consensus 168 p~~ 170 (308)
|.-
T Consensus 210 Pqs 212 (448)
T COG2271 210 PQS 212 (448)
T ss_pred ccc
Confidence 753
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=139.75 Aligned_cols=120 Identities=12% Similarity=-0.002 Sum_probs=105.4
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------------HH
Q 048448 40 KEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------------PL 94 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------------~~ 94 (308)
.+......|.+..+++.++.+.+++.+++.++..+++++.|+++||+|||+++ +.
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQ 94 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 33444556677788899999999999999999999999999999999999988 34
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+++.|++.|++.+...+...+++.|++|+++|++..++.+.+..+|.++++.++..+ +||+.+++
T Consensus 95 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 163 (365)
T TIGR00900 95 VYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV 163 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 667899999999999999999999999999999999999999999999888887664 89988766
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-16 Score=136.81 Aligned_cols=120 Identities=19% Similarity=0.222 Sum_probs=109.8
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHH
Q 048448 40 KEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGR 99 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r 99 (308)
.-...+..|++.+|+|++....|+..++|.++..+++++...+.||+.||+++ ..++++|
T Consensus 29 Efv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR 108 (394)
T COG2814 29 EFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLAR 108 (394)
T ss_pred HHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33445678999999999999999999999999999999999999999999998 8899999
Q ss_pred HHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++.|++.|..+++......+..|+++|++++++...+..++..++..++.++ +||..|++
T Consensus 109 ~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ 172 (394)
T COG2814 109 ALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA 172 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999888888776665554 99999988
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.6e-16 Score=141.72 Aligned_cols=125 Identities=12% Similarity=0.040 Sum_probs=102.1
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------------HHHHHHHH
Q 048448 45 PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------------PLLDFGRF 100 (308)
Q Consensus 45 ~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------------~~~~~~r~ 100 (308)
...|++.++ |+++.+.+++.+++.+++.+++++.|+++||+|||+++ +.+++.|+
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF 128 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 345677777 99999999999999999999999999999999999988 24566789
Q ss_pred HHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHH-HHHHHHhhh----hhhHHHHHh-----------hhccc
Q 048448 101 LAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGA-LFAYVIGAL----MSWRILALT-----------GLFFI 164 (308)
Q Consensus 101 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~l~~~----~~w~~~~~~-----------~~~~~ 164 (308)
+.|++.|...+.....+.|++|+++|++++++++.+..+|. +.++++... .+||+.+++ ..+++
T Consensus 129 l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~ 208 (452)
T PRK11273 129 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMM 208 (452)
T ss_pred HHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999988888888889999999999999999999888876 444543322 289988876 23456
Q ss_pred ccCchh
Q 048448 165 PESPRW 170 (308)
Q Consensus 165 ~esp~~ 170 (308)
||+|+.
T Consensus 209 ~~~~~~ 214 (452)
T PRK11273 209 RDTPQS 214 (452)
T ss_pred cCCHhh
Confidence 887753
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-16 Score=142.81 Aligned_cols=107 Identities=23% Similarity=0.226 Sum_probs=97.6
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHHHHhhhhccc
Q 048448 53 DLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFLAGCGIGVMS 110 (308)
Q Consensus 53 ~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l~G~~~g~~~ 110 (308)
+++++..+.|++.+++.+++.+++++.|+++||+|||+++ ..+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 7889999999999999999999999999999999999988 456778999999999999
Q ss_pred cchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh
Q 048448 111 YVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT 159 (308)
Q Consensus 111 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~ 159 (308)
+....++.|++|+++|++++++.+.+..+|..+++.+...+ +||+.|++
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i 203 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence 99999999999999999999999999999988888776554 78877766
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-16 Score=145.01 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=103.3
Q ss_pred CCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------------
Q 048448 37 NQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------------ 92 (308)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------------ 92 (308)
....+......|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (417)
T PRK10489 30 IFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPS 109 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCc
Confidence 33445555667778888888999999999999999999999999999999999877
Q ss_pred -HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 93 -PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 93 -~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+.+++.|++.|++.+...+....++.|+.|+++|++..++.+....+|..+++.++..+ +|++.+++
T Consensus 110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~ 181 (417)
T PRK10489 110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL 181 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 23456788889888877788888999999999999999999888888888888877654 78877766
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=138.46 Aligned_cols=123 Identities=19% Similarity=0.163 Sum_probs=103.5
Q ss_pred CCccccccccccc-cccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------
Q 048448 37 NQAKEQQNPTQFG-IMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------- 92 (308)
Q Consensus 37 ~~~~~~~~~~~~~-l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------- 92 (308)
....+...|..|. +.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++
T Consensus 28 ~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (392)
T PRK12382 28 YMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVS 107 (392)
T ss_pred HHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3345555566664 6789999999999999999999999999999999999999987
Q ss_pred -----HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 93 -----PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 93 -----~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+.++++|++.|++.+...+....++.|++|+++|++++++.+.+...|..+++.++..+ +|+..+.+
T Consensus 108 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 108 APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 12566799999999988888888999999999999999999888888888877776554 89886655
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-15 Score=138.75 Aligned_cols=123 Identities=16% Similarity=0.094 Sum_probs=108.0
Q ss_pred CCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHH
Q 048448 37 NQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLD 96 (308)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~ 96 (308)
..+....+...|.+.+++|.+..+.+|+.+++.++..++.+++|+++||+|||+++ +.++
T Consensus 19 ~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li 98 (495)
T PRK14995 19 AIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLI 98 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34444555667899999999999999999999999999999999999999999998 7889
Q ss_pred HHHHHHHhhhhccccchhhhhhccC-CCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 97 FGRFLAGCGIGVMSYVVPVYIAEIT-PKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 97 ~~r~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++|+++|++.+...+.....+.+.+ |+++|+++.+++.....+|..++|.++..+ +||+.|++
T Consensus 99 ~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 99 ATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 9999999999988887777776665 779999999999999999999998888776 89999987
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-15 Score=138.03 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=109.6
Q ss_pred CccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHH
Q 048448 38 QAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDF 97 (308)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~ 97 (308)
.+.+......|.+.+++|.++.+.+++.+++.++..++.++.|+++||+|||+++ ..+++
T Consensus 16 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (485)
T TIGR00711 16 LDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMII 95 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 3344555677899999999999999999999999999999999999999999987 67888
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 98 GRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 98 ~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+|++.|++.+...+....++.|++|+++|+++.+++..+..+|..+++.++..+ +||+.+++
T Consensus 96 ~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 96 FRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 999999999999999999999999999999999999999999998888887665 89987766
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.7e-16 Score=139.65 Aligned_cols=125 Identities=18% Similarity=0.106 Sum_probs=105.8
Q ss_pred ccCCccccccccccc-cccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------------------
Q 048448 35 RKNQAKEQQNPTQFG-IMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~-l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------- 92 (308)
.+....+...+..+. +.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++
T Consensus 26 ~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~ 105 (399)
T PRK05122 26 ISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLA 105 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhh
Confidence 445556666666665 6788999999999999999999999999999999999999988
Q ss_pred -------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 93 -------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 93 -------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
..+++.|++.|++.+...+....++.|+.|+++|+++.++.+.+..+|..+++.++..+ +|+..+++
T Consensus 106 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 183 (399)
T PRK05122 106 AWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLL 183 (399)
T ss_pred ccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 13577899999999999999999999999999999999998888777777777766554 89987766
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=135.76 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=105.3
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHh
Q 048448 45 PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGC 104 (308)
Q Consensus 45 ~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~ 104 (308)
+..|.+.+++|.++.+.++..+++.++..+++++.|+++||+|||+++ +.+++.|++.|+
T Consensus 41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 120 (394)
T PRK10213 41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGL 120 (394)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999988 778899999999
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+.|...+....++.|++|+++|+++.++...+.++|..+++.++..+ +||+.|++
T Consensus 121 ~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 121 ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 99999999999999999999999999999998888888888877765 89998877
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=131.71 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=102.6
Q ss_pred ccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHH
Q 048448 41 EQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRF 100 (308)
Q Consensus 41 ~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~ 100 (308)
....+..|.+++++|++..+.+++.+++.+++.+++++.|+++||+|||+++ +.++++|+
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 4456778899999999999999999999999999999999999999999999 77888999
Q ss_pred HHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh
Q 048448 101 LAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT 159 (308)
Q Consensus 101 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~ 159 (308)
+.|++.+...+.....+.+++| ++|+++++++..+...|..+++.++..+ +||+.+.+
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999997 7799999999887777777666655543 79876543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-15 Score=134.32 Aligned_cols=119 Identities=23% Similarity=0.294 Sum_probs=107.1
Q ss_pred cccccccc-ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHH
Q 048448 41 EQQNPTQF-GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGR 99 (308)
Q Consensus 41 ~~~~~~~~-~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r 99 (308)
+...+..+ .+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++ +.+++.|
T Consensus 13 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (352)
T PF07690_consen 13 SIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIAR 92 (352)
T ss_dssp HHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhc
Confidence 33455566 78899999999999999999999999999999999999999977 5678899
Q ss_pred HHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++.|++.+...+....++.|++|+++|++..++.+.+..+|.++++.++..+ +||+.+++
T Consensus 93 ~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~ 156 (352)
T PF07690_consen 93 FLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI 156 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred cccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence 9999999999999999999999999999999999999999999999888876 79887776
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-16 Score=139.51 Aligned_cols=129 Identities=22% Similarity=0.270 Sum_probs=115.2
Q ss_pred cccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHH
Q 048448 42 QQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFL 101 (308)
Q Consensus 42 ~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l 101 (308)
......+.+++.+|++++..|++.+++.+...++++++|+++||+.||+++ |+++++|.+
T Consensus 51 ~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~ 130 (493)
T KOG1330|consen 51 TIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGF 130 (493)
T ss_pred hhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466788899999999999999999999999999999999999999998 899999999
Q ss_pred HHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh-----------hhcccc
Q 048448 102 AGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT-----------GLFFIP 165 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~-----------~~~~~~ 165 (308)
.|+|.+...++.+++++|.+|..+|++++++++.+..+|..+|++++..+ .|||.+.. ..++++
T Consensus 131 vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 131 VGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred hccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999998888777665 48887665 556777
Q ss_pred cCchh
Q 048448 166 ESPRW 170 (308)
Q Consensus 166 esp~~ 170 (308)
|..|.
T Consensus 211 eP~rg 215 (493)
T KOG1330|consen 211 EPERG 215 (493)
T ss_pred Ccccc
Confidence 77653
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-15 Score=136.38 Aligned_cols=125 Identities=24% Similarity=0.251 Sum_probs=94.8
Q ss_pred ccCCccccccccccccccccCCChhHHHHH-HHHH-----HHHHHHHHHHHhhhhhcccccchH----------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLF-GSIL-----TIGAIIGAITSGRIADWVARKGAA---------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~-~s~~-----~~g~~~g~~~~g~l~d~~Grr~~~---------------- 92 (308)
.+..+....+...|.+.++++.++.+.+.. .+.. +++..+|+++.|+++||+|||+++
T Consensus 26 ~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~ 105 (434)
T PRK15075 26 LEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAF 105 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Confidence 444444555556668999999888775443 2222 233347899999999999999988
Q ss_pred ----H--------HHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh----------
Q 048448 93 ----P--------LLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL---------- 150 (308)
Q Consensus 93 ----~--------~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~---------- 150 (308)
. .++++|++.|++.|...+....+++|++|+++|++.+++.+.+..+|..+++.++..
T Consensus 106 ~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~ 185 (434)
T PRK15075 106 VPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQM 185 (434)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2 368899999999999999889999999999999999999887766665554444332
Q ss_pred --hhhHHHHHh
Q 048448 151 --MSWRILALT 159 (308)
Q Consensus 151 --~~w~~~~~~ 159 (308)
.+||+.|++
T Consensus 186 ~~~gWr~~f~~ 196 (434)
T PRK15075 186 AEWGWRIPFLI 196 (434)
T ss_pred hccchHHHHHH
Confidence 389998877
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-14 Score=125.95 Aligned_cols=122 Identities=28% Similarity=0.370 Sum_probs=108.2
Q ss_pred CccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHH
Q 048448 38 QAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDF 97 (308)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~ 97 (308)
...+...+..+.+.++++.++.+.+++.++..++..+++++.|+++||+|||+.+ +.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (352)
T cd06174 13 LDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLV 92 (352)
T ss_pred HhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3344445566778888999999999999999999999999999999999999988 56788
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 98 GRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 98 ~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.++..+ +|++.+++
T Consensus 93 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 93 GRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred HHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 899999999999999999999999999999999999999999999988887765 68887766
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-15 Score=135.30 Aligned_cols=123 Identities=12% Similarity=0.057 Sum_probs=101.5
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------------HHHHHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------------PLLDFGRFLA 102 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------------~~~~~~r~l~ 102 (308)
.|.+++ .|+++.+.+++.+++.++..+++++.|+++||+|||+.+ ..+++.|++.
T Consensus 50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 128 (438)
T TIGR00712 50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLN 128 (438)
T ss_pred hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 455665 599999999999999999999999999999999999977 1245678899
Q ss_pred HhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHh-----------hhccccc
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL-----MSWRILALT-----------GLFFIPE 166 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~-----~~w~~~~~~-----------~~~~~~e 166 (308)
|++.|...+.....+.|++|+++|+++.++.+.+..+|..+++.+... .+||..|++ ..+++||
T Consensus 129 g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 129 GWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRD 208 (438)
T ss_pred HHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999988888888999999999999999999999988888777654332 379998876 2345677
Q ss_pred Cchh
Q 048448 167 SPRW 170 (308)
Q Consensus 167 sp~~ 170 (308)
+|+.
T Consensus 209 ~~~~ 212 (438)
T TIGR00712 209 TPQS 212 (438)
T ss_pred CHHh
Confidence 7653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-15 Score=135.30 Aligned_cols=220 Identities=17% Similarity=0.140 Sum_probs=154.4
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhc
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGV 108 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~ 108 (308)
.+.+|.++...+.+.+.+++++++++|.++++.+.||++-.+.+ +.+++.|+++|+..+.
T Consensus 71 g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 71 GLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESG 150 (495)
T ss_pred CCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc
Confidence 47789999999999999999999999999999999999977666 6788899999999999
Q ss_pred cccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----------hhHHHHHh-----------hhcccccC
Q 048448 109 MSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----------SWRILALT-----------GLFFIPES 167 (308)
Q Consensus 109 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----------~w~~~~~~-----------~~~~~~es 167 (308)
.+|....++..|+.+++|++.++++.+..++|.+++++++..+ +|||.|++ +++++|+.
T Consensus 151 ~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~ 230 (495)
T KOG2533|consen 151 GWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN 230 (495)
T ss_pred cchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence 9999999999999999999999999999999999999988872 89999998 56789999
Q ss_pred ch--hHhhcCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhccccchhhHHHHHHHhhh
Q 048448 168 PR--WLAMIGKNQEFEVALSMVRGPNVDVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNVYIAFYS 245 (308)
Q Consensus 168 p~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (308)
|. |....++.+-+.+..++..... .+++.+...+.+.++.+..+...+..++..
T Consensus 231 P~~~~fl~~~ek~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~ 286 (495)
T KOG2533|consen 231 PSKAWFLTDEEKELVVERLRESPSGG------------------------IENKFKWKGFKEALKDPGVWPFSLCYFFLK 286 (495)
T ss_pred hhhccccchHHHHHHHHHHHhccCCC------------------------cccccCHHHHHHHHhchhHHHHHHHHHHHh
Confidence 86 3332222111111111111110 001134456677788888887644433332
Q ss_pred cccccc---ccceecccCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048448 246 IGMGPI---PWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTWS 294 (308)
Q Consensus 246 ~g~~~~---~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~~~~~~~~~~ 294 (308)
..-..+ .-.++.+ -...-..-....+....++++++.++.+++.|..
T Consensus 287 lv~~~~~~~lpl~l~~--~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 287 LVNYGFSYWLPLYLKS--NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred hccccHHHHHHHHHHc--CCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence 211111 1112222 1112233445555666777777777777777763
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-15 Score=134.69 Aligned_cols=124 Identities=17% Similarity=0.214 Sum_probs=110.1
Q ss_pred cCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHH
Q 048448 36 KNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLL 95 (308)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~ 95 (308)
.........+..|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++ +.+
T Consensus 17 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL 96 (385)
T ss_pred HHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 344455666778889999999999999999999999999999999999999999988 677
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++.|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.++..+ +||+.+++
T Consensus 97 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 97 LVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 88999999999999999999999999999999999999999998888888777654 89987765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=130.19 Aligned_cols=121 Identities=16% Similarity=0.252 Sum_probs=106.5
Q ss_pred ccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHH
Q 048448 39 AKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFG 98 (308)
Q Consensus 39 ~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~ 98 (308)
......+..|.+.++++.+..+.++..+++.+++.+++++.|+++||+|||+++ +.++++
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~ 110 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIA 110 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445566778889999999999999999999999999999999999999999988 678899
Q ss_pred HHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 99 RFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 99 r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
|+++|++.+...+....++.|++|+++|++.+++......+|..+++.++..+ +||+.|++
T Consensus 111 r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 111 RFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998876677778889999999999999999888888888887777654 89998876
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=131.07 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=112.0
Q ss_pred cccccccccCCChhH-HHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHh
Q 048448 46 TQFGIMADLKESYAE-YSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGC 104 (308)
Q Consensus 46 ~~~~l~~~~~l~~~~-~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~ 104 (308)
+.|++.+++|+++.+ .|.+.++++.+++++.++.|+++||+|.|+++ ..+.+.|++.|+
T Consensus 48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGv 127 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSV 127 (511)
T ss_pred HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999 99999999999999999999999999999998 678889999999
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHh-------------hhcccccCc
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM---SWRILALT-------------GLFFIPESP 168 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~w~~~~~~-------------~~~~~~esp 168 (308)
+.|+.+ ....+++.++|+++|+++.++...+..+|.+++++++..+ +||..... ..+++|..+
T Consensus 128 aEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 128 TMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPK 206 (511)
T ss_pred HHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999 9999999999999999999999999999999988887765 78765433 457788655
Q ss_pred hhHhhc
Q 048448 169 RWLAMI 174 (308)
Q Consensus 169 ~~~~~~ 174 (308)
+-+.-+
T Consensus 207 ~sl~f~ 212 (511)
T TIGR00806 207 RSLFFN 212 (511)
T ss_pred hhhhhc
Confidence 544433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.6e-14 Score=125.02 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=102.1
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHHHHHHH
Q 048448 40 KEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLLDFGRF 100 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~~r~ 100 (308)
+....+..|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||+++ +.+++.|+
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTA 95 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34556788899999999999999999999999999999999999999999988 45677899
Q ss_pred HHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHh
Q 048448 101 LAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM------SWRILALT 159 (308)
Q Consensus 101 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~------~w~~~~~~ 159 (308)
+.|++.+...+..+..+.|++| ++|+++.++.+.+..+|..+++.+...+ +||+.+.+
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~ 159 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAW 159 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999888888888899886 5899999999998888888777665543 38887754
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9e-14 Score=125.51 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=106.5
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHH
Q 048448 40 KEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGR 99 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r 99 (308)
.....+..|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++ +.+++.|
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r 98 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGR 98 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 33455677889999999999999999999999999999999999999999988 7788899
Q ss_pred HHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++.|++.+...+....++.|++|+++|++.+++...+..+|..+++.++..+ +||+.+++
T Consensus 99 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 99 LVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 9999999988888888999999999999999999888888888877766554 89998876
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=124.36 Aligned_cols=120 Identities=25% Similarity=0.327 Sum_probs=107.6
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHH
Q 048448 40 KEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGR 99 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r 99 (308)
.+...|..|.+.+++|+++.+.+++.+++.++..++.++.|+++||+|||+++ +.+++.|
T Consensus 7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 86 (377)
T PRK11102 7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMR 86 (377)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 44556778889999999999999999999999999999999999999999988 5678889
Q ss_pred HHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++.|++.+...+....++.|++|+++|++..++.+....+|..+++.++..+ +||+.+++
T Consensus 87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 150 (377)
T PRK11102 87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWV 150 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 9999999988899999999999999999999999998888888888776654 89888765
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-14 Score=128.27 Aligned_cols=125 Identities=13% Similarity=0.136 Sum_probs=106.8
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HH
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PL 94 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~ 94 (308)
.++......+...|.+.+++|++..+.+++.+++.+++.+++++.|++.||+|||+++ +.
T Consensus 18 ~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~ 97 (394)
T PRK03699 18 LTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLAL 97 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHH
Confidence 3444444556667889999999999999999999999999999999999999999988 56
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL-----MSWRILALT 159 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~-----~~w~~~~~~ 159 (308)
+++.|++.|++.|...+....++.|++|+++|+...++.+....+|..+++.+... .+||+.+++
T Consensus 98 ~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 98 FSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred HHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 77899999999998888899999999999999999998888888877777666543 389998876
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-14 Score=126.46 Aligned_cols=112 Identities=24% Similarity=0.320 Sum_probs=87.1
Q ss_pred cccccccC--CChhHHHHHHHH-----HHHHHHHHHHHHhhhhhcccccchH--------------------H-------
Q 048448 48 FGIMADLK--ESYAEYSLFGSI-----LTIGAIIGAITSGRIADWVARKGAA--------------------P------- 93 (308)
Q Consensus 48 ~~l~~~~~--l~~~~~~~~~s~-----~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~------- 93 (308)
+.+.+++. .++.+.+.+.+. .+++..+++++.|+++||+|||+++ .
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (394)
T TIGR00883 17 VLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAP 96 (394)
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHH
Confidence 34555533 445555544432 3344456899999999999999988 1
Q ss_pred -HHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHh
Q 048448 94 -LLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL------------MSWRILALT 159 (308)
Q Consensus 94 -~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~------------~~w~~~~~~ 159 (308)
.++++|+++|++.+...+....++.|++|+++|++..++.+.+..+|.++++.+... .+||+.+++
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 175 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLV 175 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHH
Confidence 378889999999999999999999999999999999999999999998888776432 378988766
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=125.58 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=104.6
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------- 92 (308)
..+...+...+..|.+++++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++
T Consensus 14 ~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~ 93 (410)
T TIGR00885 14 LWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMN 93 (410)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5566677888889999999999999999999999999999999999999999999988
Q ss_pred -HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 93 -PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 93 -~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+.+++.|++.|+|.|...+....++.+..|+++|++..++.+....+|..+++.+...
T Consensus 94 ~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~ 152 (410)
T TIGR00885 94 YTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQ 152 (410)
T ss_pred HHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999988888776553
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=125.47 Aligned_cols=124 Identities=23% Similarity=0.236 Sum_probs=108.4
Q ss_pred cCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHH
Q 048448 36 KNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLL 95 (308)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~ 95 (308)
.....+...+..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+++ +.+
T Consensus 22 ~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (471)
T PRK10504 22 QSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNEL 101 (471)
T ss_pred HHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 334444455667888999999999999999999999999999999999999999987 567
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++.|++.|++.+...+....++.|++|+++|+...++......+|..+++.++..+ +||+.|++
T Consensus 102 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~ 169 (471)
T PRK10504 102 LLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI 169 (471)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence 88899999999999999999999999999999999999988888888888877654 89998877
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=123.29 Aligned_cols=134 Identities=18% Similarity=0.107 Sum_probs=101.9
Q ss_pred CCcccccccccc-ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------------------HH
Q 048448 37 NQAKEQQNPTQF-GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------PL 94 (308)
Q Consensus 37 ~~~~~~~~~~~~-~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------~~ 94 (308)
+...+...+..+ ++.+++|.++.+.+++.+++.++..+++++.|+++||+|||+.+ +.
T Consensus 10 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (375)
T TIGR00899 10 GIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFL 89 (375)
T ss_pred HHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 344455556555 46788999999999999999999999999999999999998864 45
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhH--HHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh---------
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAAL--ATVNQLFIVTGALFAYVIGALM----SWRILALT--------- 159 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~--~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~--------- 159 (308)
+++.|++.|.+.+...+....+..|+.|++.|+.. .+....+..+|..+++.++..+ +||+.+++
T Consensus 90 l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~ 169 (375)
T TIGR00899 90 LLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCG 169 (375)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 66778888887777777778888898887777643 4666666677777776666544 89988877
Q ss_pred --hhcccccCchh
Q 048448 160 --GLFFIPESPRW 170 (308)
Q Consensus 160 --~~~~~~esp~~ 170 (308)
..+++||.|+.
T Consensus 170 ~~~~~~~~~~~~~ 182 (375)
T TIGR00899 170 VLVWLFLPSYPRG 182 (375)
T ss_pred HHHHHhCCCcccC
Confidence 22447887754
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=123.85 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=104.3
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HH
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PL 94 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~ 94 (308)
..+...+...+..|.+.+++|.+..+.|++.+++.++..+++++.|+++||+|||+++ +.
T Consensus 17 ~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (381)
T PRK03633 17 LLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWS 96 (381)
T ss_pred HHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 4556667777888899999999999999999999999999999999999999999987 67
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
++++|++.|++.+...+.....+.+..++++|++.++.++.+..+|..+++.+...+
T Consensus 97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 97 WLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888999999999988888877888889999999999999999999999888887654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.1e-13 Score=120.44 Aligned_cols=112 Identities=16% Similarity=0.149 Sum_probs=100.7
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhh
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIG 107 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g 107 (308)
.++.+++|.++.+.|++.++..++..+.+++.|+++||+|||+++ +.+++.|++.|++.+
T Consensus 35 ~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~ 114 (400)
T PRK11646 35 IRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGT 114 (400)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999988 678889999999988
Q ss_pred ccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHh
Q 048448 108 VMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM---SWRILALT 159 (308)
Q Consensus 108 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~w~~~~~~ 159 (308)
...+...+++.|++|+++|+++.++.+....+|..+++.++..+ +|++.+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~ 169 (400)
T PRK11646 115 LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCAT 169 (400)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888889999999999999999999999888888888877765 88888766
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-13 Score=120.29 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=104.5
Q ss_pred ccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHH
Q 048448 39 AKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFG 98 (308)
Q Consensus 39 ~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~ 98 (308)
..+...+..+.+.+++|+++.+.++..+++.++..+++++.|+++||+|||+++ +.+++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLL 107 (406)
T ss_pred hhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 445555667788899999999999999999999999999999999999999988 567888
Q ss_pred HHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 99 RFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 99 r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
|++.|++.+...+.....+.|.+|+++|++..++......+|..+++.++..+ +||+.+++
T Consensus 108 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 108 RFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred HHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 99999999888888899999999999999988888777777777777776554 89988876
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=122.51 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=103.8
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------HHHHHHHHHHHhhhhcc
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------PLLDFGRFLAGCGIGVM 109 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------~~~~~~r~l~G~~~g~~ 109 (308)
.+.+..+++.++.+.+++.+++.+++.++.+++|+++||+|||+++ ...++.|+++|++.+..
T Consensus 26 ~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~a~~ 105 (393)
T PRK11195 26 AIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHPLLAYGLVGIGAAAY 105 (393)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999999999999999999999999999999988 12246899999999999
Q ss_pred ccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHh----------hhcccccCch
Q 048448 110 SYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM---SWRILALT----------GLFFIPESPR 169 (308)
Q Consensus 110 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~w~~~~~~----------~~~~~~esp~ 169 (308)
.+...+++.|++|+++|+++.++.+....+|.+++|.+++.+ .|+..+.+ ...++||+|.
T Consensus 106 ~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 178 (393)
T PRK11195 106 SPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGA 178 (393)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999999999999999999999998888776 34444433 2356787664
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=123.99 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=102.3
Q ss_pred ccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHH
Q 048448 39 AKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFG 98 (308)
Q Consensus 39 ~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~ 98 (308)
..+...|..+.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++ +.+++.
T Consensus 21 ~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (401)
T PRK11043 21 ATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVL 100 (401)
T ss_pred HHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344455667788999999999999999999999999999999999999999988 567788
Q ss_pred HHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 99 RFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 99 r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
|++.|++.+...+....++.|++|+++++...+.......+|..+++.++..+ +||+.+++
T Consensus 101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~ 165 (401)
T PRK11043 101 RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT 165 (401)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999998877777788899999999888888887777777777777666554 89987766
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=125.85 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=99.0
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------- 92 (308)
..+.......+..|.+++++|+++.+.++..+.+.+++.+++++.|++.||+|||+++
T Consensus 37 ~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~ 116 (438)
T PRK10133 37 LWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN 116 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445555556678889999999999999999999999999999999999999999988
Q ss_pred -HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 048448 93 -PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIG 148 (308)
Q Consensus 93 -~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 148 (308)
..++++|++.|++.|...+....++.|+.|+++|...+++.+..+.+|..+++.++
T Consensus 117 ~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999988777777778888888888888887664
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=123.31 Aligned_cols=124 Identities=18% Similarity=0.207 Sum_probs=107.1
Q ss_pred cCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHH
Q 048448 36 KNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLL 95 (308)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~ 95 (308)
.....+...+..|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++ +.+
T Consensus 20 ~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (394)
T PRK11652 20 GQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVL 99 (394)
T ss_pred HHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 334455566778889999999999999999999999999999999999999999987 667
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++.|++.|++.+...+....+..|.+++++++.+.++.+.+..+|..+++.++..+ +||+.+++
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~ 167 (394)
T PRK11652 100 IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF 167 (394)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 88999999998877777788888999999999999999988888888887776654 89988776
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-12 Score=117.16 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=88.8
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------------HHHHHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------------PLLDFGRFLA 102 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------------~~~~~~r~l~ 102 (308)
.+.+.+++|+++.+.+++.+.+.++..+++++.|+++||+|||+++ +.+++.|++.
T Consensus 36 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 115 (402)
T TIGR00897 36 LSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIR 115 (402)
T ss_pred HHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH
Confidence 3445678999999999999999999999999999999999999988 2345678999
Q ss_pred HhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHH-HHHHHHhhh
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGA-LFAYVIGAL 150 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~l~~~ 150 (308)
|++.+...+....++.+.+|+++|++++++.+.+..+|. .+++.++..
T Consensus 116 G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 116 GLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY 164 (402)
T ss_pred HcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998887777777888899999999999999999988886 567766543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=127.86 Aligned_cols=116 Identities=13% Similarity=0.173 Sum_probs=94.4
Q ss_pred ccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHH
Q 048448 43 QNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLA 102 (308)
Q Consensus 43 ~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~ 102 (308)
..+..+.+.+++|++..+.+++.+++.+++.+++++.|+++||+|||+++ ..++++|++.
T Consensus 55 ~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~ 134 (476)
T PLN00028 55 AAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFI 134 (476)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44667889999999999999999999999999999999999999999988 5567889999
Q ss_pred HhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHH----HHHhh---------hhhhHHHHHh
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFA----YVIGA---------LMSWRILALT 159 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~----~~l~~---------~~~w~~~~~~ 159 (308)
|++.+... ....+++|++|+++||+++++.+....+|..++ +.+.. ..+||+.|++
T Consensus 135 G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i 203 (476)
T PLN00028 135 GFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFV 203 (476)
T ss_pred HHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Confidence 99887643 455678999999999999999876555555444 33322 1379999887
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-13 Score=122.45 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=101.4
Q ss_pred ccccccc-ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHH
Q 048448 40 KEQQNPT-QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFG 98 (308)
Q Consensus 40 ~~~~~~~-~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~ 98 (308)
.+...+. .+++.+++|+++.+.|++.+++.++..+++++.|+++||+|||+++ +.++++
T Consensus 23 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (395)
T PRK10054 23 RGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLF 102 (395)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333343 3467788999999999999999999999999999999999999987 455667
Q ss_pred HHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHh
Q 048448 99 RFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM---SWRILALT 159 (308)
Q Consensus 99 r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~w~~~~~~ 159 (308)
|++.|.+.+...+....+..|..|+++|++..++.+...++|..+++.++..+ +|+..|++
T Consensus 103 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~ 166 (395)
T PRK10054 103 FALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWL 166 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHH
Confidence 88888777777788889999999999999999999999999999988887775 78877765
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=127.56 Aligned_cols=142 Identities=13% Similarity=0.073 Sum_probs=104.8
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFLAG 103 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l~G 103 (308)
.+.+.+++|++..+.++..+...++..++.++.|+++||+|||+++ ..+++++++.|
T Consensus 274 p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (490)
T PRK10642 274 PSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLA 353 (490)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3445567888888888888888999999999999999999999876 12334566666
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHH-HHHHHHHHHHHHHHHhhhh-----hhHHHHHh----------hhcccccC
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATV-NQLFIVTGALFAYVIGALM-----SWRILALT----------GLFFIPES 167 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~-----~w~~~~~~----------~~~~~~es 167 (308)
++.+........++.|.+|++.|++..++ ++.+...| .+++.+...+ +|+..+++ ..+++|||
T Consensus 354 ~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes 432 (490)
T PRK10642 354 VILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKET 432 (490)
T ss_pred HHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 66665566677888899999999998887 55544444 4444444332 35544332 44567999
Q ss_pred chhHhhc-----CChHHHHHHHHHhcC
Q 048448 168 PRWLAMI-----GKNQEFEVALSMVRG 189 (308)
Q Consensus 168 p~~~~~~-----~~~~~~~~~l~~~~~ 189 (308)
|+|+.++ ++++|+++.++++++
T Consensus 433 ~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 433 ANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cCCCCCCccccccchhhHHHHhhcccc
Confidence 9998865 889999999999874
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-13 Score=120.35 Aligned_cols=123 Identities=22% Similarity=0.058 Sum_probs=101.1
Q ss_pred cCCccccccccccccccccCCChhH-----HHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------
Q 048448 36 KNQAKEQQNPTQFGIMADLKESYAE-----YSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------ 92 (308)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~l~~~~-----~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------ 92 (308)
.+...+...+..|.+.+++|++..+ .+++.+++.++..+++++.|+++||+|||+++
T Consensus 26 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 105 (408)
T PRK09874 26 TGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQ 105 (408)
T ss_pred HHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666777888888887554 48899999999999999999999999999988
Q ss_pred --HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 93 --PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 93 --~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+.+++.|++.|++.+ ..+....++.+.+|+++|++..++.+.+..+|..+++.++..+ +||+.+++
T Consensus 106 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 177 (408)
T PRK09874 106 NIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI 177 (408)
T ss_pred hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 677888999998755 4566777888999999999999999998888888887777654 88887765
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-13 Score=123.41 Aligned_cols=118 Identities=28% Similarity=0.314 Sum_probs=104.6
Q ss_pred cccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHH
Q 048448 42 QQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFL 101 (308)
Q Consensus 42 ~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l 101 (308)
...+..|.+.+++|.+..+.++..+++.++..+++++.|+++||+|||+.+ +.+++.|++
T Consensus 21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 100 (392)
T PRK10473 21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFL 100 (392)
T ss_pred HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 334567889999999999999999999999999999999999999999988 567788999
Q ss_pred HHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 102 AGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.|++.+...+....++.|++|+++|++..++.+....+|..+++.++..+ +|++.+++
T Consensus 101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~ 162 (392)
T PRK10473 101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYT 162 (392)
T ss_pred HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHH
Confidence 99999988889999999999999999999999988888888888776654 79887766
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-13 Score=117.72 Aligned_cols=94 Identities=21% Similarity=0.253 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhccccchhhh
Q 048448 57 SYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSYVVPVY 116 (308)
Q Consensus 57 ~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~~~~~~ 116 (308)
+....|.+.|.|.++.++.++.+|.++|++|||+++ ..+++.|++.|+.-| ...+.-++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHH
Confidence 455689999999999999999999999999999998 356666999999876 56678889
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 117 IAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 117 ~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
++|..++++|+..++...+++.+|.++||.+++++
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl 179 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL 179 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence 99999999999999999999999999998888876
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-13 Score=127.59 Aligned_cols=114 Identities=12% Similarity=0.035 Sum_probs=96.4
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHH-HHHHHHH
Q 048448 45 PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLD-FGRFLAG 103 (308)
Q Consensus 45 ~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~-~~r~l~G 103 (308)
...+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++ +.++ ..|++.|
T Consensus 40 ~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G 119 (455)
T TIGR00892 40 VFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITG 119 (455)
T ss_pred hhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 346788899999999999999999999999999999999999999988 3443 3478899
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++.+...+.....+.++++ ++|+++.++.+.+..+|..+++.+...+ +||+.|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~ 178 (455)
T TIGR00892 120 LGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLI 178 (455)
T ss_pred hcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 9988766677778889886 7899999999999888888877766544 89999877
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=117.14 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=85.2
Q ss_pred ccccc-ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------------------HHHHHHHHH
Q 048448 44 NPTQF-GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------PLLDFGRFL 101 (308)
Q Consensus 44 ~~~~~-~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------~~~~~~r~l 101 (308)
.+..| .+.+++|+++.+.+++.+++.+++++++++.|+++||+|||+.+ +.+++.|++
T Consensus 21 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T TIGR00886 21 SPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLF 100 (366)
T ss_pred HHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45566 48899999999999999999999999999999999999999987 346788999
Q ss_pred HHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 048448 102 AGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYV 146 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~ 146 (308)
.|++.+ ..+....+++|++|+++|++..++......+|..+++.
T Consensus 101 ~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 144 (366)
T TIGR00886 101 IGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQF 144 (366)
T ss_pred HHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHH
Confidence 999865 45667889999999999999999988555555544433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-12 Score=129.78 Aligned_cols=105 Identities=14% Similarity=0.107 Sum_probs=90.8
Q ss_pred ccccccccCCCh--hHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHH
Q 048448 47 QFGIMADLKESY--AEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFL 101 (308)
Q Consensus 47 ~~~l~~~~~l~~--~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l 101 (308)
.+.+..+++.+. ...+++.+++.++.+++++++|+++||+|||+++ +.++++|++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 112 (1146)
T PRK08633 33 QNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFL 112 (1146)
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 344555555543 4578999999999999999999999999999977 567889999
Q ss_pred HHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 102 AGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++..+
T Consensus 113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l 162 (1146)
T PRK08633 113 LGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFL 162 (1146)
T ss_pred HHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888877654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-13 Score=127.69 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=103.0
Q ss_pred CccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------H--------
Q 048448 38 QAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------P-------- 93 (308)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------~-------- 93 (308)
...++.+...+.+++++++++.+.|++.+.+.+++++++++.+++.||+|||+++ .
T Consensus 47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~ 126 (633)
T TIGR00805 47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYS 126 (633)
T ss_pred HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcc
Confidence 4457778889999999999999999999999999999999999999999999977 1
Q ss_pred -----------------------------------------------HHHHHHHHHHhhhhccccchhhhhhccCCCCCc
Q 048448 94 -----------------------------------------------LLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLR 126 (308)
Q Consensus 94 -----------------------------------------------~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r 126 (308)
.++++|+++|+|.+..++...+++.|++|+++|
T Consensus 127 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~ 206 (633)
T TIGR00805 127 YSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNS 206 (633)
T ss_pred ccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcccc
Confidence 145789999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 127 AALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 127 ~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+.+.++++.+..+|..++++++..
T Consensus 207 ~~~~~i~~~~~~iG~~lG~llgg~ 230 (633)
T TIGR00805 207 PLYIGILESIAVFGPAFGYLLGSF 230 (633)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999998887654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-12 Score=114.86 Aligned_cols=98 Identities=9% Similarity=0.036 Sum_probs=84.0
Q ss_pred cccccccc-ccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------------HHHHHH
Q 048448 45 PTQFGIMA-DLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------------PLLDFG 98 (308)
Q Consensus 45 ~~~~~l~~-~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------------~~~~~~ 98 (308)
+..+.+.+ ++|++++|.+++.+++.+++.++.++.|++.||+|.|+++ +.+++.
T Consensus 55 ~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~ 134 (462)
T PRK15034 55 AVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVI 134 (462)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 34455555 7999999999999999999999999999999999999877 267788
Q ss_pred HHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHH
Q 048448 99 RFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALF 143 (308)
Q Consensus 99 r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~ 143 (308)
|++.|++ |..++.....+++++|+++||++.++.....++|..+
T Consensus 135 r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l 178 (462)
T PRK15034 135 ALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSV 178 (462)
T ss_pred HHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHH
Confidence 9999998 6788999999999999999999999996555555543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.4e-12 Score=110.46 Aligned_cols=114 Identities=18% Similarity=0.077 Sum_probs=96.8
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHH
Q 048448 44 NPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRF 100 (308)
Q Consensus 44 ~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~ 100 (308)
++..+.+.+++++|+.|.+++.++..+...+..++.|++.||+|.|++. +.++++++
T Consensus 34 s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gl 113 (417)
T COG2223 34 SPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGL 113 (417)
T ss_pred HHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 4556678899999999999999999999999999999999999999887 48999999
Q ss_pred HHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHH----HHHHHHHhhhhh---hHHHHHh
Q 048448 101 LAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTG----ALFAYVIGALMS---WRILALT 159 (308)
Q Consensus 101 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g----~~~~~~l~~~~~---w~~~~~~ 159 (308)
+.|++. +.+++...++++++|++++|.++++.. ..++| .+++|.+....+ |+....+
T Consensus 114 l~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i 177 (417)
T COG2223 114 LLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI 177 (417)
T ss_pred HHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999985 578889999999999999999999996 55555 555666666666 8765544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=125.18 Aligned_cols=100 Identities=21% Similarity=0.238 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHHHHhhhhccccchhh
Q 048448 59 AEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFLAGCGIGVMSYVVPV 115 (308)
Q Consensus 59 ~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l~G~~~g~~~~~~~~ 115 (308)
...++..+++.++++++++++|+++||+|||+++ +.++++|+++|++.+...++..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 4578888899999999999999999999999864 67788999999999999999999
Q ss_pred hhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHH
Q 048448 116 YIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILAL 158 (308)
Q Consensus 116 ~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~ 158 (308)
++.+++++++|++++++.+.+..+|.++++.+++.+ +|++.+.
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~ 178 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA 178 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999999999999999999999999998876 7888763
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=114.59 Aligned_cols=133 Identities=13% Similarity=0.091 Sum_probs=105.5
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc-----cccchH-----------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV-----ARKGAA----------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~-----Grr~~~----------------- 92 (308)
..+...+..++..|...++.|.+..+++.+ +.....+ ++.+++|+++||+ |||+..
T Consensus 23 ~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~ 100 (491)
T PRK11010 23 ASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGF 100 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 456667777777888888889999999887 4444444 5789999999999 999853
Q ss_pred -------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHh-
Q 048448 93 -------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL-----MSWRILALT- 159 (308)
Q Consensus 93 -------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~-----~~w~~~~~~- 159 (308)
+.+.+.+++.|++.+...+...++..|++|+++|++..++...+..+|.++++.+... .+||..|++
T Consensus 101 ~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~ 180 (491)
T PRK11010 101 LEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLM 180 (491)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence 3566678889998888888899999999999999999999999999988888765543 389998877
Q ss_pred ---------hhcccccCch
Q 048448 160 ---------GLFFIPESPR 169 (308)
Q Consensus 160 ---------~~~~~~esp~ 169 (308)
..+++||++.
T Consensus 181 a~l~ll~~l~~~~~~e~~~ 199 (491)
T PRK11010 181 AALLIPCIIATLLAPEPTD 199 (491)
T ss_pred HHHHHHHHHHHHhcCCCcc
Confidence 2234677754
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=109.87 Aligned_cols=120 Identities=14% Similarity=0.081 Sum_probs=96.1
Q ss_pred CccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc-----cccchH--------------------
Q 048448 38 QAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV-----ARKGAA-------------------- 92 (308)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~-----Grr~~~-------------------- 92 (308)
..++..++..|.+.+++|++.++.++..++ .+...+ .+++|+++||+ |||+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~ 79 (356)
T TIGR00901 2 LPLGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP 79 (356)
T ss_pred CCchhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence 345666777889999999999999999655 444444 88999999998 898864
Q ss_pred ----HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----h--------hHHH
Q 048448 93 ----PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----S--------WRIL 156 (308)
Q Consensus 93 ----~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~--------w~~~ 156 (308)
+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ + ||..
T Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~ 159 (356)
T TIGR00901 80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI 159 (356)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence 23444455666666667778888999999999999999999999999999888887544 6 9999
Q ss_pred HHh
Q 048448 157 ALT 159 (308)
Q Consensus 157 ~~~ 159 (308)
|++
T Consensus 160 f~i 162 (356)
T TIGR00901 160 FFW 162 (356)
T ss_pred HHH
Confidence 887
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-12 Score=111.83 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=109.9
Q ss_pred ccccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------
Q 048448 33 IDRKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------- 92 (308)
Q Consensus 33 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------- 92 (308)
+..+++....+.++.|.+++.++++..+.+++..+++.|+.+++++.|++.+|+|+|+.+
T Consensus 22 Ffl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~ 101 (422)
T COG0738 22 FFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS 101 (422)
T ss_pred HHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 347888888888899999999999999999999999999999999999999999999988
Q ss_pred ---HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 93 ---PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 93 ---~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
..++++-|+.|.|.|...+....+++...+++.....+.+.+.+..+|.+++|.++..+
T Consensus 102 ~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~l 163 (422)
T COG0738 102 KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163 (422)
T ss_pred hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56777889999999999999999999999998888999999999999999999987764
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-12 Score=118.36 Aligned_cols=138 Identities=14% Similarity=0.026 Sum_probs=102.3
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------------HHHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------------PLLDFGRF 100 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------------~~~~~~r~ 100 (308)
.+.+++++|++..+.+++.++. .....+++++|++.||+|+|+++ +.+++.|+
T Consensus 50 s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~ 128 (591)
T PTZ00207 50 SGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNG 128 (591)
T ss_pred HHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 4578999999999999988774 34456777899999999999998 34567899
Q ss_pred HHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHH-HHHHhhhh--hhHHHHHh-------------hhccc
Q 048448 101 LAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALF-AYVIGALM--SWRILALT-------------GLFFI 164 (308)
Q Consensus 101 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~l~~~~--~w~~~~~~-------------~~~~~ 164 (308)
+.|+|.+...+.....+.+++| ++||.+.++...+..+|..+ +++....+ +|+..+++ .++..
T Consensus 129 l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 129 LMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence 9999999888888889999997 68899999999999999875 44444443 67665555 22344
Q ss_pred ccCchhHhhcCChHHHHHHHHH
Q 048448 165 PESPRWLAMIGKNQEFEVALSM 186 (308)
Q Consensus 165 ~esp~~~~~~~~~~~~~~~l~~ 186 (308)
|+.|++...+++.++.++..++
T Consensus 208 p~~~~~~~~~~~~~~~~~~~~~ 229 (591)
T PTZ00207 208 PPFHLTGYQEKHLDEEEKAQRL 229 (591)
T ss_pred CcchhhcccccCCCHHHHHHHh
Confidence 5556665455444444444333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=109.12 Aligned_cols=121 Identities=8% Similarity=-0.169 Sum_probs=98.6
Q ss_pred CCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HH
Q 048448 37 NQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PL 94 (308)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~ 94 (308)
....+...|..|.+.+++|.+..++|++.+++.++..+++++.|+++||+||+... +.
T Consensus 17 ~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 96 (382)
T TIGR00902 17 FCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWL 96 (382)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34457777888888899999999999999999999999999999999999974322 56
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+++.|++.|.+.+...+...++..++ .++|++..+....+.++|.++++.++..+ +||..+.+
T Consensus 97 l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 97 LFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred HHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 67788888888877778877777654 46678888888888888888888776655 89988766
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=105.35 Aligned_cols=121 Identities=7% Similarity=-0.148 Sum_probs=95.2
Q ss_pred CCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccc----chH------------------HH
Q 048448 37 NQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARK----GAA------------------PL 94 (308)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr----~~~------------------~~ 94 (308)
....+...|..|.+.++++.+..++|++.+++.++..+++++.|++.||+||+ +.+ +.
T Consensus 17 ~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (382)
T PRK11128 17 FFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWL 96 (382)
T ss_pred HHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 34467777877888899999999999999999999999999999999999983 222 56
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+++.|++.|++.+...+...+++.++. ++|++..+......++|..+++.++..+ +||..+++
T Consensus 97 l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 97 LFVAIGLFNLFFSPLVPLTDALANTWQ--KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHH--hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 667899999988888887777777663 3466666666666667777777766654 89988766
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-11 Score=110.97 Aligned_cols=120 Identities=12% Similarity=0.029 Sum_probs=100.1
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccchH---------------------HHHHH
Q 048448 40 KEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADW-VARKGAA---------------------PLLDF 97 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~-~Grr~~~---------------------~~~~~ 97 (308)
++.......++.+++|++..+.+++.+++.....+..+++|+++|| +|||+++ ..+++
T Consensus 31 y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~ 110 (489)
T PRK10207 31 YGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFI 110 (489)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 3444455667888999999999999999998888888999999999 9999998 22457
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCC--CchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 98 GRFLAGCGIGVMSYVVPVYIAEITPKN--LRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 98 ~r~l~G~~~g~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+|+++|+|.|...+....++.|.+|++ +|+...+++..+.++|..+++.++..+ +||+.|++
T Consensus 111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i 178 (489)
T PRK10207 111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL 178 (489)
T ss_pred HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 899999999999999999999999877 447778888888888887777666654 99999877
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=105.56 Aligned_cols=123 Identities=15% Similarity=0.011 Sum_probs=99.7
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc-----cccch-H----------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV-----ARKGA-A---------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~-----Grr~~-~---------------- 92 (308)
.-+...++..+..|.+.++.|++.+++|++..+... .+..+++|+++||+ |||+. +
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~ 87 (402)
T PRK11902 10 ASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF 87 (402)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 345667778888888889999999999999777665 57889999999999 88763 4
Q ss_pred -------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh
Q 048448 93 -------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT 159 (308)
Q Consensus 93 -------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~ 159 (308)
+.+++..++.++..+...+...+++.|+.|+++|+++.++...+..+|.++++.+...+ +||..|++
T Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 88 CPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 33455556667777777888899999999999999999999998888888887755442 89998877
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8e-10 Score=100.20 Aligned_cols=124 Identities=15% Similarity=0.095 Sum_probs=85.5
Q ss_pred ccCCcccccccccc-ccccccCCChhHHHHHHHHH-HHHHHHHHHHHhhhhhcccccchH--------------------
Q 048448 35 RKNQAKEQQNPTQF-GIMADLKESYAEYSLFGSIL-TIGAIIGAITSGRIADWVARKGAA-------------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~-~l~~~~~l~~~~~~~~~s~~-~~g~~~g~~~~g~l~d~~Grr~~~-------------------- 92 (308)
..+...+...+..+ ++.+++|+++++.|++.+.. .++.+++.+++++ .||+|||+.+
T Consensus 26 ~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 104 (393)
T PRK15011 26 LTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRN 104 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444455455443 46788999999999997665 5577777777777 9999999864
Q ss_pred -HHHHHHHHHHHhhhhccccchhhhhhccCCCCCc--hhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 93 -PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLR--AALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 93 -~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+.+++.+.+.|...+...+....+..++.+++.| +...++.+.+.++|.++++.++..+ +||..|++
T Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~ 178 (393)
T PRK15011 105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLS 178 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHH
Confidence 3334444444444445667777777887776655 3445777777788888887777654 99988866
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=105.76 Aligned_cols=114 Identities=20% Similarity=0.094 Sum_probs=83.5
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc----ccccchH---------------------------HH
Q 048448 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADW----VARKGAA---------------------------PL 94 (308)
Q Consensus 46 ~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~----~Grr~~~---------------------------~~ 94 (308)
..+++.+++|+++.+.|++.++..+..++..++.|+++|| +|||+.+ ..
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3557778899999999999999999999999999999998 6775543 12
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccC-CCCCchhHHHHHHHHHHHHHHHHHHHhh-----------hhhhHHHHHh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEIT-PKNLRAALATVNQLFIVTGALFAYVIGA-----------LMSWRILALT 159 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~-----------~~~w~~~~~~ 159 (308)
+++.+++.+++.+.......++..|.. ++++|++..++.+.+..+|.++++.+.. ..+||+.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i 178 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALV 178 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence 233455566666655556667778876 5688999999888877777655433321 2268887655
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-10 Score=104.22 Aligned_cols=120 Identities=12% Similarity=-0.084 Sum_probs=77.0
Q ss_pred ccccccc-ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------H--HHH-------HHH
Q 048448 40 KEQQNPT-QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------P--LLD-------FGR 99 (308)
Q Consensus 40 ~~~~~~~-~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------~--~~~-------~~r 99 (308)
.+...+. ..++.+++|+++.+.|++.+++.++..+++++.|+++||+|||+++ . .+. ..+
T Consensus 26 ~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (420)
T PRK09528 26 WSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYN 105 (420)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433443 3456667999999999999999999999999999999999999987 0 000 012
Q ss_pred HHHH-----hhhhccccchhhhhhccCC--CCCchhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHh
Q 048448 100 FLAG-----CGIGVMSYVVPVYIAEITP--KNLRAALATVNQLFIVTGALFAYVIGALM---SWRILALT 159 (308)
Q Consensus 100 ~l~G-----~~~g~~~~~~~~~~~e~~~--~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~w~~~~~~ 159 (308)
.+.+ +..+.........+.++.+ .++++...+.......+|..+++.++..+ +|+..+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~ 175 (420)
T PRK09528 106 ILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWL 175 (420)
T ss_pred HHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHH
Confidence 2222 2222222222222223322 23456666777777777777777776655 78877766
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.6e-10 Score=99.70 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=76.1
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------H----------------HHHHHH
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------P----------------LLDFGR 99 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------~----------------~~~~~r 99 (308)
.++.+++|+++.+.+++.+++.++..+++++.|+++||+|||+.+ . .+++.+
T Consensus 27 ~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (396)
T TIGR00882 27 IWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGG 106 (396)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999999999999999987 0 011224
Q ss_pred HHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHh
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM---SWRILALT 159 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~w~~~~~~ 159 (308)
++.|++.+...+....+..+..++ ++...+......++|..+++.++..+ +|+..|++
T Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~ 167 (396)
T TIGR00882 107 LYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWL 167 (396)
T ss_pred HHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhhccCchHHHHH
Confidence 445555555566666666554332 23344444455556666666655543 89988866
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-10 Score=105.78 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=99.0
Q ss_pred cccccccc--cCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccchH--------------------HHHHHHHHHH
Q 048448 46 TQFGIMAD--LKESYAEYSLFGSILTIGAIIGAITSGRIADW-VARKGAA--------------------PLLDFGRFLA 102 (308)
Q Consensus 46 ~~~~l~~~--~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~-~Grr~~~--------------------~~~~~~r~l~ 102 (308)
...++.++ +|++..+.+++.+++.++..++++++|+++|| +|||+++ +.++++|++.
T Consensus 33 L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~ 112 (475)
T TIGR00924 33 LAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTI 112 (475)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 33455555 89999999999999999999999999999999 8999987 4567789999
Q ss_pred HhhhhccccchhhhhhccCCCCC---chhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNL---RAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
|++.|...+....++++++|+++ |+.+.++++.+.++|..+++.+...+ +|++.|++
T Consensus 113 g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~ 176 (475)
T TIGR00924 113 AVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL 176 (475)
T ss_pred HhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 99999999999999999998754 88889999999999999988887765 89988766
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-09 Score=93.06 Aligned_cols=214 Identities=18% Similarity=0.187 Sum_probs=148.6
Q ss_pred CCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHHHH
Q 048448 37 NQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLLDF 97 (308)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~ 97 (308)
.-......|..+.+.+++|++.+..|+++++..+...+.+++..++.+|+|.++.+ ..++.
T Consensus 25 R~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~ 104 (395)
T COG2807 25 RPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFL 104 (395)
T ss_pred chhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 34456667889999999999999999999999999999999999999999999887 67788
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh--------hhccc
Q 048448 98 GRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT--------GLFFI 164 (308)
Q Consensus 98 ~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~--------~~~~~ 164 (308)
+-.+.|++.+......+.++.+.+|++. +..++++....++|..+++.++..+ +||..... ...++
T Consensus 105 gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl 183 (395)
T COG2807 105 GTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL 183 (395)
T ss_pred HHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999998655 8899999999888877776655544 69876655 45566
Q ss_pred ccCchhHhhcCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhccccchhhHHHHHHHhh
Q 048448 165 PESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEILSKRITLILQESLALINQLPRVNILDLFNRRNIRFVNVYIAFY 244 (308)
Q Consensus 165 ~esp~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (308)
|...|.. . ...+.+..+-..+++++.-|...+|...-
T Consensus 184 Pq~~r~~------~-------------------------------------~~~~~~~~~~~~vw~~~~aW~vtLfmGlq 220 (395)
T COG2807 184 PQALREQ------A-------------------------------------ASIATKLVSVRKVWRSPLAWQVTLFMGLQ 220 (395)
T ss_pred hhccccc------c-------------------------------------cccccccccccccccCchhHHHHHHHHhh
Confidence 6543210 0 00111122234577778766665554433
Q ss_pred hccccccccceecccCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048448 245 SIGMGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTWS 294 (308)
Q Consensus 245 ~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~~~~~~~~~~ 294 (308)
+.....+..=+..=+-+...-+.-.|....+..+.+....++.|.+.+..
T Consensus 221 S~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~ 270 (395)
T COG2807 221 SLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS 270 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33222111101111122233333455566667777777777777777643
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-09 Score=98.51 Aligned_cols=111 Identities=20% Similarity=0.224 Sum_probs=95.3
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------------HHHHHHHHHHH
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------------PLLDFGRFLAG 103 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------------~~~~~~r~l~G 103 (308)
.+..++.-++...+++..+..+..++.++++|.++||+.||+++ +.+++.-++.|
T Consensus 35 wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g 114 (524)
T PF05977_consen 35 WLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLG 114 (524)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 44455566888999999999999999999999999999999999 66778889999
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++.+...|...+.+.|..|+++...++++.+...++..++||.+++.+ +-.+.|.+
T Consensus 115 ~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 115 IGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888888877765 44444444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.6e-10 Score=85.60 Aligned_cols=94 Identities=27% Similarity=0.366 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhccccchhhhhhccCCCCC
Q 048448 66 SILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNL 125 (308)
Q Consensus 66 s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~ 125 (308)
+.+.++..+++++.|++.||+|||+.+ +.+.+.+++.|++.+...+....++.|.+|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 456788899999999999999999988 456677899999999889999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 126 RAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 126 r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
|++..++.+....+|..+++.+...+ +|++.+++
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 122 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF 122 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHH
Confidence 99999999999999998888877765 78776655
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=99.10 Aligned_cols=124 Identities=15% Similarity=-0.026 Sum_probs=79.0
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccc-cchH--------------------HHHHHHHHHH
Q 048448 44 NPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVAR-KGAA--------------------PLLDFGRFLA 102 (308)
Q Consensus 44 ~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Gr-r~~~--------------------~~~~~~r~l~ 102 (308)
++..+++.+++|++..++|++.+++.++..+++++.|.++||+|| |+++ +.+++.|++.
T Consensus 23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (418)
T TIGR00889 23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLAN 102 (418)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455667778899999999999999999999999999999999966 5555 3456778888
Q ss_pred Hhhhhccccchhhhh----h----ccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHh---------hhcccc
Q 048448 103 GCGIGVMSYVVPVYI----A----EITPKNLRAALATVNQLFIVTGALFAYVIGALMSWRILALT---------GLFFIP 165 (308)
Q Consensus 103 G~~~g~~~~~~~~~~----~----e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~w~~~~~~---------~~~~~~ 165 (308)
|++.+...+...++. . |......|.+..+ ..++.+|..+++.+.....|+..+.. ..+++|
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G--~lG~~ig~~l~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 180 (418)
T TIGR00889 103 SLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG--TIGFIAAMWAVSLLDIELSNIQLYITAGSSALLGVFALTLP 180 (418)
T ss_pred HHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh--hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 887665555444332 1 2222223444444 23455555555444322234422222 345678
Q ss_pred cCch
Q 048448 166 ESPR 169 (308)
Q Consensus 166 esp~ 169 (308)
|.|+
T Consensus 181 e~~~ 184 (418)
T TIGR00889 181 DIPV 184 (418)
T ss_pred CCCC
Confidence 8763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-09 Score=98.02 Aligned_cols=118 Identities=17% Similarity=0.108 Sum_probs=93.6
Q ss_pred cccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccchH---------H------------HHHHHH
Q 048448 42 QQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV-ARKGAA---------P------------LLDFGR 99 (308)
Q Consensus 42 ~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~-Grr~~~---------~------------~~~~~r 99 (308)
.......++.+++|+++.+.+.+.+.+.....++++++|+++||+ |||+++ . .+.++.
T Consensus 28 ~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l 107 (493)
T PRK15462 28 MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSL 107 (493)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 333444566778999999999999999999999999999999999 999987 0 011222
Q ss_pred HHHHhhhhccccchhhhhhccCCCC--CchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKN--LRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.+.++|.|...+...++++|.+|++ +|....++.+.+.++|..++|.+..++ +|++.|.+
T Consensus 108 ~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~i 173 (493)
T PRK15462 108 AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGL 173 (493)
T ss_pred HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHH
Confidence 2344566666677788999999875 788899999998999999999888776 89988876
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-09 Score=98.98 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=94.5
Q ss_pred cccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccchH---------------------HHHHHHH
Q 048448 42 QQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADW-VARKGAA---------------------PLLDFGR 99 (308)
Q Consensus 42 ~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~-~Grr~~~---------------------~~~~~~r 99 (308)
.......++.+++|++..+.+++.+.+........+++|+++|| +|||+++ ..++++|
T Consensus 40 ~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~ 119 (500)
T PRK09584 40 LQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGM 119 (500)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33344567778999999998888888776666667899999999 5999988 2455678
Q ss_pred HHHHhhhhccccchhhhhhccCCCCC--chhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKNL--RAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++.|++.|...+....++.|++|++. |+...++++.+.++|..+++.++.++ +||+.|++
T Consensus 120 ~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i 185 (500)
T PRK09584 120 ATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFAL 185 (500)
T ss_pred HHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 89999999888888899999998653 44567778888889988888887765 89998877
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.4e-09 Score=93.98 Aligned_cols=112 Identities=17% Similarity=0.003 Sum_probs=93.5
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHHHHhh
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFLAGCG 105 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l~G~~ 105 (308)
+.+.++++.++.+.+.+.+++.++..+++++.|++.||+|||+.+ ..+++..++.|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (377)
T TIGR00890 229 KPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFT 308 (377)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Confidence 344567888888899999999999999999999999999999877 1123446677888
Q ss_pred hhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 106 IGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 106 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.|...+..+.++.|.+|+++|++..++.+....+|..+++.+.+.+ +|+..+.+
T Consensus 309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~ 366 (377)
T TIGR00890 309 WGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIV 366 (377)
T ss_pred hccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Confidence 8877788888999999999999999999999999999888877654 78877765
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.9e-10 Score=96.56 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=97.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhccccc
Q 048448 53 DLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSYV 112 (308)
Q Consensus 53 ~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~~ 112 (308)
+.+-..+++|++.+...+..++..++.|.+.||+|+|..+ +++++.|.++|+|.+...+.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence 3455778899999999999999999999999999999877 88999999999999999999
Q ss_pred hhhhhhccCCCCC-chhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 113 VPVYIAEITPKNL-RAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 113 ~~~~~~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
..+++++.+|++. |++++++.-.+.++|.+++|.+++.+ |.+..|++
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV 231 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV 231 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence 9999999998765 79999999999999999999998876 77777777
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-09 Score=99.28 Aligned_cols=114 Identities=22% Similarity=0.321 Sum_probs=89.3
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHH
Q 048448 44 NPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAG 103 (308)
Q Consensus 44 ~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G 103 (308)
+..++.+..++|-+ ....|+.++..++..+++++.|.++|.+|||..+ ..++++-.+.|
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G 142 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG 142 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH
Confidence 44567788888764 5678899999999999999999999999999988 67888889999
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+|.|.... ....++|..|.+.|+...++......+...+++.++..+ +|||.+++
T Consensus 143 vgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~ 201 (599)
T PF06609_consen 143 VGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYI 201 (599)
T ss_pred HhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHH
Confidence 99876654 455689999999998877766655444444455555433 89998877
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.4e-09 Score=100.13 Aligned_cols=91 Identities=16% Similarity=0.078 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhccccchhhhhhcc
Q 048448 61 YSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEI 120 (308)
Q Consensus 61 ~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~ 120 (308)
..+...+..++.++|.+++|+++||+|||+++ ..+++.+++.|++.++.+++...+++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677899999999999999999999988 3455567788888777888899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 121 TPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 121 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+|.+.|++++++.+....+|.+++|.+...+
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L 707 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSF 707 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-08 Score=91.31 Aligned_cols=125 Identities=8% Similarity=-0.153 Sum_probs=84.4
Q ss_pred ccCCccccccccccccccccCCChhHHHHHH--HHHHHHHHHHHHHH-hhhhhcccccchH-------------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFG--SILTIGAIIGAITS-GRIADWVARKGAA------------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~--s~~~~g~~~g~~~~-g~l~d~~Grr~~~------------------- 92 (308)
.-+...+...+..|.+.++.|++++++|... ++..+...+.+++. ++..||+|||+..
T Consensus 12 ~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~ 91 (390)
T TIGR02718 12 SQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVG 91 (390)
T ss_pred HHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCC
Confidence 4466677778889999999999999999973 56677777777666 6689999998874
Q ss_pred ------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHh
Q 048448 93 ------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGA----LMSWRILALT 159 (308)
Q Consensus 93 ------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~----~~~w~~~~~~ 159 (308)
..++..-++.++......+..-.+..|..+++.++...+....+..+|.++++.... ..+||..|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~ 168 (390)
T TIGR02718 92 PDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLL 168 (390)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 011111112222222233333445567777777777777777777888888775433 4499988877
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.5e-09 Score=93.83 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=88.1
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhh
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIG 107 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g 107 (308)
.++++++|+++.+.+.+.+...++.+++.++.|+++||+|||+.+ +.+++.+++.+++.|
T Consensus 241 ~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g 320 (393)
T PRK15011 241 LFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIG 320 (393)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 356677899999999988888888888999999999999999876 334456666667666
Q ss_pred ccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 108 VMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 108 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
...+....+..|.+|+ +|++..++++....+|..+++.+++.+ +|+..+++
T Consensus 321 ~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~ 375 (393)
T PRK15011 321 ILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWF 375 (393)
T ss_pred HHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 6666677788899986 589999998888888888887777664 78877765
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-09 Score=100.20 Aligned_cols=123 Identities=12% Similarity=0.064 Sum_probs=101.2
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HH
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PL 94 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~ 94 (308)
.++....+. -..+.++++++-+..+++|+.++......+.+++.+.+.||+|.|.+. +.
T Consensus 58 ~~g~~~~~G-v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~ 136 (509)
T KOG2504|consen 58 TDGLINSFG-LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQ 136 (509)
T ss_pred hhcchheeh-hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344444333 346678889999999999999999999999999999999999999988 33
Q ss_pred -HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 95 -LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 95 -~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
++..-++.|+|.|..+......+..++ +++|+.++++...+..+|.++-+.+...+ +||..+++
T Consensus 137 l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~ 205 (509)
T KOG2504|consen 137 LYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLI 205 (509)
T ss_pred HHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHH
Confidence 344467899999999988888888766 47889999999999999998887777765 89988777
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-07 Score=85.28 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=81.4
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhh----cccccchH----------H-HHH-------------
Q 048448 45 PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIAD----WVARKGAA----------P-LLD------------- 96 (308)
Q Consensus 45 ~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d----~~Grr~~~----------~-~~~------------- 96 (308)
+..+.+.+++|++....+++..+..+..++.+++.|+++| |+|||+.+ . .++
T Consensus 25 ~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~ 104 (477)
T TIGR01301 25 SLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDN 104 (477)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccc
Confidence 3444567889999999999999999999999999999999 59999987 0 000
Q ss_pred ---------HHHHHHHh-----hhhccccchhhhhhccCCCCCc--hhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 97 ---------FGRFLAGC-----GIGVMSYVVPVYIAEITPKNLR--AALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 97 ---------~~r~l~G~-----~~g~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+.+++.|+ +.....+..-++++|.+|+++| +.+.++.+....+|.++++.+++..
T Consensus 105 ~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 105 LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222232 4445556667889999998865 5788888888999999988877653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.1e-08 Score=87.65 Aligned_cols=105 Identities=28% Similarity=0.336 Sum_probs=86.6
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------------------HHHHHHHHHHHhh
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------PLLDFGRFLAGCG 105 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------~~~~~~r~l~G~~ 105 (308)
.+++.+++|.+..+.+++.+...++.+++.++.|++.||+|||+.+ +.+.+..++.|+.
T Consensus 262 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (405)
T TIGR00891 262 PTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQML 341 (405)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 3455667899999999999999999999999999999999999877 1222333555666
Q ss_pred hhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 106 IGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 106 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
.+...+..+.++.|.+|++.|++..++.+....+|..+++.+.+.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l 387 (405)
T TIGR00891 342 VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL 387 (405)
T ss_pred HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 6666777888999999999999999999988889988888887765
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-09 Score=101.26 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=3.0
Q ss_pred CCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------------
Q 048448 37 NQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------------ 92 (308)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------------ 92 (308)
....|+.....+.+++.+++++++.|++.+.+-++.++..++..++.+|..|-+.+
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y 95 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPY 95 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence 66778888888999999999999999999999999999999999999987666666
Q ss_pred ----------------------------------------------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCc
Q 048448 93 ----------------------------------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLR 126 (308)
Q Consensus 93 ----------------------------------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r 126 (308)
..++++.++.|+|....+++..+|+-|..+++.-
T Consensus 96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s 175 (539)
T PF03137_consen 96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS 175 (539)
T ss_dssp --------------------------------------------------------SSS---------------------
T ss_pred ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence 7788899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 127 AALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 127 ~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+...++......+|..+|.++++.
T Consensus 176 plYiGi~~~~~~lGPa~Gf~lg~~ 199 (539)
T PF03137_consen 176 PLYIGILYAMSILGPALGFLLGSF 199 (539)
T ss_dssp ------------------------
T ss_pred ccchhhhhHHhhccHHHHHHHHHH
Confidence 999999999999999998888764
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.9e-08 Score=90.07 Aligned_cols=102 Identities=19% Similarity=0.164 Sum_probs=75.7
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHHHH
Q 048448 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFLAG 103 (308)
Q Consensus 46 ~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l~G 103 (308)
...++.+++|++..+.++..++..++.+++.+++|+++||+|||+.+ ....+.+++.|
T Consensus 281 ~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 360 (467)
T PRK09556 281 SPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALG 360 (467)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34467788999999999999999999999999999999999998865 12234455555
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHH-HHHHHHHH
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVT-GALFAYVI 147 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~l 147 (308)
++..........+..|.+|++.||.+.++.+....+ |..+++.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~ 405 (467)
T PRK09556 361 FLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVG 405 (467)
T ss_pred HHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhh
Confidence 433222223345677999999999999999877775 54454443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.5e-08 Score=88.05 Aligned_cols=131 Identities=18% Similarity=0.169 Sum_probs=96.4
Q ss_pred ccccccCCccccccc--ccCCcccccccc-cccccc-ccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccchH-
Q 048448 20 DRKNEYGNVREPLID--RKNQAKEQQNPT-QFGIMA-DLKESYAEYSLFGSILTIGAIIGAITSGRIADWVA--RKGAA- 92 (308)
Q Consensus 20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~l~~-~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~G--rr~~~- 92 (308)
+++..|+...+..+. ......+...+. -|++++ |.+-+.+..|++.++..+|.+++++++|+-+.|.| ||+++
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~ 107 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV 107 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHH
Confidence 444455555544433 333444444433 344443 34556677899999999999999999999999998 67766
Q ss_pred -----------------------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048448 93 -----------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGA 149 (308)
Q Consensus 93 -----------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 149 (308)
+.++++|++.|+|.| ...+.=+|+++....+.|.++.+....+..+|.++||.+..
T Consensus 108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~ 186 (488)
T KOG2325|consen 108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQL 186 (488)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHH
Confidence 789999999999976 45566788888888888888988888888888888877766
Q ss_pred hh
Q 048448 150 LM 151 (308)
Q Consensus 150 ~~ 151 (308)
.+
T Consensus 187 ~f 188 (488)
T KOG2325|consen 187 AF 188 (488)
T ss_pred HH
Confidence 54
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.5e-07 Score=82.69 Aligned_cols=122 Identities=20% Similarity=0.152 Sum_probs=83.1
Q ss_pred ccCCcccccc-ccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccc-----ccchH----------------
Q 048448 35 RKNQAKEQQN-PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVA-----RKGAA---------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~G-----rr~~~---------------- 92 (308)
..|.. +... ...+.+.+++|+++++++...++..+...+-.+ +|+++|+++ ||+.+
T Consensus 37 ~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~ 114 (468)
T TIGR00788 37 VKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLP 114 (468)
T ss_pred HhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcc
Confidence 33444 3333 345566678999999999999999999999766 999999997 55544
Q ss_pred ------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHH---HHHHHHHHHHHHHhhh----hhhHHHHHh
Q 048448 93 ------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQ---LFIVTGALFAYVIGAL----MSWRILALT 159 (308)
Q Consensus 93 ------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~---~~~~~g~~~~~~l~~~----~~w~~~~~~ 159 (308)
....+..++.+++.+......-.+..|..+ ++++...+... ....+|.++++.+++. .+|+..+++
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~ 193 (468)
T TIGR00788 115 GKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLI 193 (468)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 122235667777777777888888999988 44444333332 2223566655555544 489988877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.6e-08 Score=85.94 Aligned_cols=111 Identities=15% Similarity=0.120 Sum_probs=89.1
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhh
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIG 107 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g 107 (308)
..+.+++|.++.+.+++.+...+...++.++.|++.||+|||+.+ +.+++.+++.|++.|
T Consensus 224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 303 (375)
T TIGR00899 224 LLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG 303 (375)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677899999999888888778888899999999999999877 344556777888888
Q ss_pred ccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 108 VMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 108 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
...+....++.|..|++ ++...++++....+|..+++.+.+.+ +|+..+++
T Consensus 304 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~ 358 (375)
T TIGR00899 304 ILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWF 358 (375)
T ss_pred HHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 77788888888988864 56899999888888888888877654 67776665
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=86.54 Aligned_cols=101 Identities=19% Similarity=0.319 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------------HHHHHHHHHHHhhhhccccchh
Q 048448 59 AEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------------PLLDFGRFLAGCGIGVMSYVVP 114 (308)
Q Consensus 59 ~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------------~~~~~~r~l~G~~~g~~~~~~~ 114 (308)
...+.+.++..++.+++.++.|+++||+|+|+++ +.+++.+++.|++.+...+...
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999988 1234467788888888888888
Q ss_pred hhhhccCCCCCchhHHHHHH-HHHHHHHHHHHHHhhhh----------hhHHHHHh
Q 048448 115 VYIAEITPKNLRAALATVNQ-LFIVTGALFAYVIGALM----------SWRILALT 159 (308)
Q Consensus 115 ~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~----------~w~~~~~~ 159 (308)
.++.|.+|++.|++..++.+ ....+|..+++.+++.+ +|+..+++
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~ 386 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLF 386 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHH
Confidence 99999999999999999997 56788888888877654 38877765
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=83.26 Aligned_cols=109 Identities=24% Similarity=0.344 Sum_probs=95.9
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccc-hH--------------------HHHHHHHHHHHhhhhcc
Q 048448 51 MADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKG-AA--------------------PLLDFGRFLAGCGIGVM 109 (308)
Q Consensus 51 ~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~-~~--------------------~~~~~~r~l~G~~~g~~ 109 (308)
.+.+|.++.+.++..+...++..++.++.+++.||+|||+ .+ +.+++..++.|++.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 282 (352)
T cd06174 203 QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFA 282 (352)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcc
Confidence 3344889999999999999999999999999999999998 65 45667788999999999
Q ss_pred ccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 110 SYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 110 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.+....++.|..|+++|++..++.+....+|..+++.+...+ +|+..+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~ 336 (352)
T cd06174 283 FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLI 336 (352)
T ss_pred chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHH
Confidence 999999999999999999999999999999999988887765 67766655
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=85.54 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=89.2
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhh
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGI 106 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~ 106 (308)
.|.+.++.|.++.+.+.+.+...++.+++.++.|++.||+|||+.+ +.+.+..++.|++.
T Consensus 243 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 322 (406)
T PRK11551 243 LPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFV 322 (406)
T ss_pred HHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 3455567899999999999999999999999999999999999876 33444556677777
Q ss_pred hccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 107 GVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 107 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
++..+....++.|.+|++.|++..++.+....+|..+++.+.+.+
T Consensus 323 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l 367 (406)
T PRK11551 323 VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQL 367 (406)
T ss_pred HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhh
Confidence 667778888999999999999999999999999999998887765
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.9e-07 Score=84.69 Aligned_cols=99 Identities=15% Similarity=0.048 Sum_probs=72.9
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------H---------------HHHHHHHHHH
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------P---------------LLDFGRFLAG 103 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------~---------------~~~~~r~l~G 103 (308)
|.+.++.|.+....++......++.+++.++.++++||+|||+.+ . ....+.++.+
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 374 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 566677888877777777778888999999999999999999877 0 0111122233
Q ss_pred hhhhc-cccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 048448 104 CGIGV-MSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYV 146 (308)
Q Consensus 104 ~~~g~-~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~ 146 (308)
++.+. ..+....++.|.+|++.|+.+.++.+....+|.++++.
T Consensus 375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 418 (479)
T PRK10077 375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSW 418 (479)
T ss_pred HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 23567889999999999999999998888877776643
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.8e-07 Score=87.29 Aligned_cols=110 Identities=20% Similarity=0.157 Sum_probs=84.8
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHHHHhhh
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFLAGCGI 106 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l~G~~~ 106 (308)
++.+++|.+..+.+++.+...++..+++++.|+++||+|||+++ +.+.+..++.++..
T Consensus 301 ~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (496)
T PRK03893 301 YLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLG 380 (496)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence 44468899999999999999999999999999999999999887 11112223333333
Q ss_pred hccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHH
Q 048448 107 GVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILAL 158 (308)
Q Consensus 107 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~ 158 (308)
.+..+..+.++.|.+|++.|++..++.+....+|..+++.+++.+ +|+..+.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~ 436 (496)
T PRK03893 381 QGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALA 436 (496)
T ss_pred cccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHH
Confidence 334566778889999999999999999888888888888877665 6665553
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=84.29 Aligned_cols=112 Identities=20% Similarity=0.126 Sum_probs=87.1
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------------HHHHHHHHHHH
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------------PLLDFGRFLAG 103 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------------~~~~~~r~l~G 103 (308)
..+.++++.++.+.+...+...++..++.++.|+++||+|||+.+ +.+++..++.|
T Consensus 244 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (394)
T TIGR00883 244 TYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLA 323 (394)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 344467889999999999999999999999999999999999865 12233445667
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHH-HHHHHHHHHHHHHHHhhhh----h-hHHHHHh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATV-NQLFIVTGALFAYVIGALM----S-WRILALT 159 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~----~-w~~~~~~ 159 (308)
++.+...+....++.|.+|++.|++..++ .+.+..+|..++|.+.+.+ + |+..++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~ 385 (394)
T TIGR00883 324 LIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY 385 (394)
T ss_pred HHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence 77777788889999999999999998887 4555667777777776654 4 7665544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-07 Score=84.89 Aligned_cols=101 Identities=12% Similarity=-0.025 Sum_probs=71.4
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc----ccccchH---------------------------HH
Q 048448 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADW----VARKGAA---------------------------PL 94 (308)
Q Consensus 46 ~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~----~Grr~~~---------------------------~~ 94 (308)
...++.+++|+++...|.+.++..+.-.+..++.|+++|| +|||+.. ..
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4557778899999999999999999999999999999999 7775543 11
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccC-CCCCchhHHHHHHHHHHHHHHHHHH
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEIT-PKNLRAALATVNQLFIVTGALFAYV 146 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~ 146 (308)
+++.-++.+.+.........++.+|+. ++++|++..++-..+..+|..+++.
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~ 164 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSV 164 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223334344344444556778877 5578888777777666666555543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-07 Score=83.97 Aligned_cols=104 Identities=21% Similarity=0.189 Sum_probs=90.9
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhh
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGI 106 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~ 106 (308)
.|.+.++++.++.+.+.+.++..++..++.++.|++.||+|||+.+ ...++..++.|++.
T Consensus 273 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 352 (398)
T TIGR00895 273 LPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFV 352 (398)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 4567778899999999999999999999999999999999998554 23445667888888
Q ss_pred hccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 107 GVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 107 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+...+...+++.|.+|++.|++..++.+....+|..+++.+.+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 353 NGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 88889999999999999999999999999999999999888764
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-07 Score=82.57 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=90.6
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------HHHHHHHHHHHhhhhcc
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------PLLDFGRFLAGCGIGVM 109 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------~~~~~~r~l~G~~~g~~ 109 (308)
.|.+.++.|.++.+.+.+.+...++.+++.++.|++.||+|+|+++ .......++.|++.+..
T Consensus 223 lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 302 (381)
T PRK03633 223 MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTL 302 (381)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhH
Confidence 3445556789999999999999999999999999999999999876 12223566777776677
Q ss_pred ccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 110 SYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 110 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.+....++.|..|+++++...+.++....+|.+++|.+++.+ +|++.|++
T Consensus 303 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~ 356 (381)
T PRK03633 303 YPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIM 356 (381)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 888888889999988888788887788888888888887766 67776666
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-07 Score=84.16 Aligned_cols=105 Identities=15% Similarity=0.099 Sum_probs=84.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhccccchh
Q 048448 55 KESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSYVVP 114 (308)
Q Consensus 55 ~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~~~~ 114 (308)
+.+..+.+.+.++..++..++.+++|++.||+|+|+.+ +.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667889999999999999999999999999999987 4556678888888877777777
Q ss_pred hhhhccCCCCCchhHHHH-HHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 115 VYIAEITPKNLRAALATV-NQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 115 ~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.++.|.+|++.|+...+. ++....+|.++++.+.+.+ +|+..+++
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~ 387 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI 387 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 889999999999877554 5666677777777766654 78877766
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-07 Score=87.66 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=92.7
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccchH----------------------HHHHHHHHHHH
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV--ARKGAA----------------------PLLDFGRFLAG 103 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~--Grr~~~----------------------~~~~~~r~l~G 103 (308)
+.+.++.+.++.+.+++.++..++.+++.++.|+++||. ++|+.. +.+++.+++.|
T Consensus 265 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G 344 (455)
T TIGR00892 265 VPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFG 344 (455)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 344466899999999999999999999999999999974 333212 44566788899
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT 159 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~ 159 (308)
++.+...+....++.|.+|++++++..++++....+|.++++.+.+.+ +|+..+++
T Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~ 405 (455)
T TIGR00892 345 LSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYA 405 (455)
T ss_pred HHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHH
Confidence 998888888899999999999999999999999999999999888765 47777666
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-07 Score=83.15 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=79.8
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------------HHHHHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------------PLLDFGRFLA 102 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------------~~~~~~r~l~ 102 (308)
.+++.+++|++......+..+..+..+++.++.|+++||+|||+++ ..+++..++.
T Consensus 274 ~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (438)
T PRK09952 274 LNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLA 353 (438)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3455677888887666666666777788889999999999999877 0011123344
Q ss_pred HhhhhccccchhhhhhccCCCCCchhHHHHH-HHHHHHHHHHHHHHhhhh------hhHHHHHh
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVN-QLFIVTGALFAYVIGALM------SWRILALT 159 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~~------~w~~~~~~ 159 (308)
|++.+...+..+.++.|.+|.+.|+...++. +.+..+|..++|.+...+ +|+..+.+
T Consensus 354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~ 417 (438)
T PRK09952 354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIY 417 (438)
T ss_pred HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 5666666677888999999999999888884 444557777777766654 36665544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.7e-07 Score=83.14 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=76.7
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccchH-----------------------HHHHHHH
Q 048448 45 PTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV--ARKGAA-----------------------PLLDFGR 99 (308)
Q Consensus 45 ~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~--Grr~~~-----------------------~~~~~~r 99 (308)
....+++++.|++..+.+...+++.++.+++.++.|+++||+ |||... ...+++.
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACM 354 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 334456666889989999999999999999999999999999 555422 0011112
Q ss_pred HHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHH-HHHHhhhh----hhHHHHHh
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALF-AYVIGALM----SWRILALT 159 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~l~~~~----~w~~~~~~ 159 (308)
++.|.+..........++.|.+|++.||+..++.+....+|..+ ++.+.+.+ +|+..|.+
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~ 419 (452)
T PRK11273 355 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 419 (452)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHH
Confidence 22233222222223345679999999999999998777776543 56555443 78877765
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=79.98 Aligned_cols=114 Identities=21% Similarity=0.177 Sum_probs=84.5
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhh----cccccchH-----------------------------
Q 048448 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIAD----WVARKGAA----------------------------- 92 (308)
Q Consensus 46 ~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d----~~Grr~~~----------------------------- 92 (308)
..+++.+.+++++...|.+..+..+..++..++.|.++| |+|||+..
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 355677788999999999999999999999999999999 89988866
Q ss_pred HHHHHHHHHHHhhhhccccchhhhhhccCC-CCCchhHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHh
Q 048448 93 PLLDFGRFLAGCGIGVMSYVVPVYIAEITP-KNLRAALATVNQLFIVTGALFAYVIGALM-----------SWRILALT 159 (308)
Q Consensus 93 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----------~w~~~~~~ 159 (308)
..+.+.-++..++.........++..|..+ +++|.+..+.-+.+..+|.++...+...+ +|++...+
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 113444445566666666666778889887 47899999888888777776443333321 47776655
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.6e-07 Score=80.76 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=84.2
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhcccc
Q 048448 52 ADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSY 111 (308)
Q Consensus 52 ~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~ 111 (308)
.+.+. ...++..+.+.++..++.++.|++.||+|+|+.+ +.+++..++.|++.+...+
T Consensus 244 ~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~ 321 (399)
T PRK05122 244 AARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFP 321 (399)
T ss_pred HHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHH
Confidence 34454 3446667788899999999999999999999877 3455667889998888887
Q ss_pred chhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 112 VVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 112 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.....+.|..|++.|++..++++....+|..+++.+.+.+ +|+..+++
T Consensus 322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 373 (399)
T PRK05122 322 ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLA 373 (399)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 7778888999999999999999988888877766665544 78877766
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-07 Score=82.95 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=86.4
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccch--H-------------------------HHHHHHHH
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGA--A-------------------------PLLDFGRF 100 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~--~-------------------------~~~~~~r~ 100 (308)
.++.++++.++.+.+++.++..++..++.++.|++.||+|||+. . ....+..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (399)
T TIGR00893 240 TYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALV 319 (399)
T ss_pred HHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 34556788999999999999999999999999999999999961 1 01111222
Q ss_pred HHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHh
Q 048448 101 LAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----S-WRILALT 159 (308)
Q Consensus 101 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~-w~~~~~~ 159 (308)
+.+....+..+....++.|.+|++.|++..++.+....+|..+++.+...+ + |+..+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~ 383 (399)
T TIGR00893 320 ALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMV 383 (399)
T ss_pred HHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHH
Confidence 233333336788889999999999999999999999999999988887765 4 7776655
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-06 Score=78.66 Aligned_cols=112 Identities=12% Similarity=0.047 Sum_probs=87.0
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhh
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGI 106 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~ 106 (308)
.+.+.+..|.+..+.+++.++..++.++++++.|++.||+|||... +.++++.++.|++.
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~ 308 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI 308 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3456666889999999999999999999999999999999998765 33444566777777
Q ss_pred hccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 107 GVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 107 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+...+....++.+..| +.|++++++++....+|..+++.+++.+ +++..+++
T Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~ 364 (390)
T PRK03545 309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYV 364 (390)
T ss_pred hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHH
Confidence 6666667777888776 5788888888777777777777766654 77777766
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.1e-07 Score=81.88 Aligned_cols=113 Identities=14% Similarity=-0.051 Sum_probs=82.9
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------H--HH-------------------H
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------P--LL-------------------D 96 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------~--~~-------------------~ 96 (308)
.+.+.++.|.+..+.++..+...++.+++.++.|+++||+|||+.+ . .+ +
T Consensus 307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (481)
T TIGR00879 307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAI 386 (481)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHH
Confidence 4566677888888888999999999999999999999999999877 0 00 0
Q ss_pred HHHHHHHhhhh-ccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 97 FGRFLAGCGIG-VMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 97 ~~r~l~G~~~g-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+.-.+.+.+.+ ...+....++.|.+|++.|++..++.+....+|.++++.+...+ +|++.|++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~ 454 (481)
T TIGR00879 387 VFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIF 454 (481)
T ss_pred HHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehh
Confidence 01111111122 23355667779999999999999999999999998888876654 56654443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=78.95 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=85.4
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhcccc
Q 048448 52 ADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSY 111 (308)
Q Consensus 52 ~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~ 111 (308)
++.+.+. .+...+.+.++..+++++.|++.||+|+|+.+ +.++++.++.|++.+...+
T Consensus 244 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 321 (392)
T PRK12382 244 ASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFP 321 (392)
T ss_pred HhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHH
Confidence 3445443 45666778888899999999999999999877 3445667888888887788
Q ss_pred chhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 112 VVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 112 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.....+.|.+|+++||+..++++....+|..+++.+...+ +|+..+.+
T Consensus 322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~ 373 (392)
T PRK12382 322 ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLA 373 (392)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 8888889999999999999999998888888888777665 78877766
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=78.64 Aligned_cols=83 Identities=12% Similarity=-0.098 Sum_probs=61.2
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccc-cchH--------------------HHHHHH
Q 048448 40 KEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVAR-KGAA--------------------PLLDFG 98 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Gr-r~~~--------------------~~~~~~ 98 (308)
.|...|..+...++.|++..++|.+.++..+..++++++.|+++||.++ |+.+ +.+++.
T Consensus 18 ~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~ 97 (400)
T PF03825_consen 18 YGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVI 97 (400)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4555566667778889999999999999999999999999999999864 4444 334444
Q ss_pred HHHHHhhhhccccchhhhhhccCC
Q 048448 99 RFLAGCGIGVMSYVVPVYIAEITP 122 (308)
Q Consensus 99 r~l~G~~~g~~~~~~~~~~~e~~~ 122 (308)
-++..+......+..-++..+...
T Consensus 98 ~~l~~~~~~p~~pl~dsi~~~~~~ 121 (400)
T PF03825_consen 98 MLLFSFFFSPTMPLSDSIALSYLG 121 (400)
T ss_pred HHHHHHHHccHHHHHHHHHHHHcc
Confidence 445555555566666666666654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=79.70 Aligned_cols=103 Identities=18% Similarity=0.106 Sum_probs=84.3
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhc
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGV 108 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~ 108 (308)
+..+.+|.++...+++.++..++.+++.++.+++.||.++++.+ ...+++.++.|++.+.
T Consensus 249 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 328 (417)
T PRK10489 249 LADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAI 328 (417)
T ss_pred HHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 33444899999999999999999999999999999998777655 3345566778887777
Q ss_pred cccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 109 MSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 109 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
..+...+++.|..|++.||+..+++.....+|..+++.+.+.+
T Consensus 329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l 371 (417)
T PRK10489 329 SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGL 371 (417)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Confidence 6677778899999999999999999888888888887777665
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=77.96 Aligned_cols=105 Identities=15% Similarity=0.227 Sum_probs=89.6
Q ss_pred ccccccc-cCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------------------HHHHHHHHHHHh
Q 048448 47 QFGIMAD-LKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------PLLDFGRFLAGC 104 (308)
Q Consensus 47 ~~~l~~~-~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------~~~~~~r~l~G~ 104 (308)
.|.+.++ ++.++.+.+.+.+...++..++.++.+++.||+|||+.+ +.+++..++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (365)
T TIGR00900 234 FPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGV 313 (365)
T ss_pred hHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Confidence 4455554 899999999999999999999999999999999999877 123455678888
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+.+...+....++.|..|++.|++..++.+....+|..+++.+.+.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 314 GYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999988887654
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=78.81 Aligned_cols=113 Identities=11% Similarity=0.024 Sum_probs=87.4
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhh
Q 048448 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCG 105 (308)
Q Consensus 46 ~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~ 105 (308)
...++.+++|+++.+.+.+.+.+.++..+|.++.|+++||+|||+.+ ..+.+..++.|++
T Consensus 228 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 307 (394)
T PRK03699 228 VPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFF 307 (394)
T ss_pred HHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34455577899999999999999999999999999999999999877 2333455667777
Q ss_pred hhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 106 IGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 106 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.+..++....+..|..|. .++...+.......+|..++|.+.+.+ +|+..+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~ 364 (394)
T PRK03699 308 SSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLT 364 (394)
T ss_pred HHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhh
Confidence 777777777777777764 456777777777788888888777665 67766654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.1e-06 Score=77.99 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhccccchhhhhhcc
Q 048448 61 YSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEI 120 (308)
Q Consensus 61 ~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~ 120 (308)
.+.+.++..++..++.++.|++.||+|||+.+ +.+++.+++.|++.+...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 45666777888889999999999999999877 4556678889999988888888888899
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 121 TPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 121 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.|++.||+..++.+....+|..+++.+++.+ +|+..|++
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~ 382 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLV 382 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHH
Confidence 9999999999999888888888888887765 78887776
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.3e-06 Score=76.79 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=82.4
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------------HHHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------------PLLDFGRF 100 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------------~~~~~~r~ 100 (308)
.|.+.+++|.+..+.+.+.+...++..++.++.|+++||+|||+.+ +..++..+
T Consensus 245 ~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 324 (402)
T TIGR00897 245 LPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAI 324 (402)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHH
Confidence 3455577899999999999999999999999999999999988753 01223344
Q ss_pred HHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 101 LAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 101 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+.|++.+...+ ....+.|..| ++||+..++.+....+|..++|.+...+ +|+..+++
T Consensus 325 ~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~ 385 (402)
T TIGR00897 325 ALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWI 385 (402)
T ss_pred HHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 56665554433 3345567655 5899999999999999998888877665 66665554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.3e-07 Score=78.97 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=82.1
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccch-H-----------------------HHHHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVA-RKGA-A-----------------------PLLDFGRFL 101 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~G-rr~~-~-----------------------~~~~~~r~l 101 (308)
..++.+.++.++.+.+...+.+.++.+++.++.|++.||.+ +|+. + ...++..++
T Consensus 240 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (379)
T TIGR00881 240 PLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFA 319 (379)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 34556678999999999999999999999999999999863 3332 1 112233445
Q ss_pred HHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHH
Q 048448 102 AGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRIL 156 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~ 156 (308)
.|+..+...+....+..|.+|++.|++..++.+....+|..+++.+.+.+ +|+..
T Consensus 320 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 320 LGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 55544445555667889999999999999999998888888887776654 56543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-06 Score=76.40 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=83.3
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------H---------HHHHHHHHHHhhhhcc
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------P---------LLDFGRFLAGCGIGVM 109 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------~---------~~~~~r~l~G~~~g~~ 109 (308)
.+..+.|.+..+.+...+++.++..+|.++.+++.||+|||+.+ . ...+.-++.|++.+..
T Consensus 230 ~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~ 309 (393)
T PRK09705 230 AFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGA 309 (393)
T ss_pred HHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccch
Confidence 33445899999999999999999999999999999999999876 0 0111234567777777
Q ss_pred ccchhhhhhccCC-CCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh
Q 048448 110 SYVVPVYIAEITP-KNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT 159 (308)
Q Consensus 110 ~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~ 159 (308)
.+.......+..+ ++.|++..++.+....++..++|.+.+++ +|...+++
T Consensus 310 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~ 365 (393)
T PRK09705 310 FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAF 365 (393)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 7776666667764 57889999998888888888888777665 35554444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.7e-05 Score=71.29 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=44.0
Q ss_pred ccccccceecccCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048448 248 MGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTWSS 295 (308)
Q Consensus 248 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~ 295 (308)
..+..-++.+|+.|+...+.-.|+....+...++++|++++.+.+..+
T Consensus 397 ~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 397 IQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356778899999999999999999999999999999999999998765
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-06 Score=79.84 Aligned_cols=103 Identities=12% Similarity=0.141 Sum_probs=86.7
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------------HHHHHHHHHHHh
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------------PLLDFGRFLAGC 104 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------------~~~~~~r~l~G~ 104 (308)
++++.+|.++.+.++......++..++.++.|++.||+|||+.+ +.++..-++.|+
T Consensus 281 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 360 (485)
T TIGR00711 281 YLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGF 360 (485)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Confidence 45566899999999999999999999999999999999999876 123344567888
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+.+...+.......+..|+++|+.+.++.+....+|..+++.+...+
T Consensus 361 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 361 GMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777778889999999999999999999999988877654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.9e-06 Score=78.04 Aligned_cols=103 Identities=17% Similarity=0.072 Sum_probs=73.7
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----HHH-------------------HHHHHHHH
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----PLL-------------------DFGRFLAG 103 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----~~~-------------------~~~r~l~G 103 (308)
+++++.+|++..+.++....+.++..++.++.|+++||+|||+.+ ... .+..++.|
T Consensus 263 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (434)
T PRK15075 263 TFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLS 342 (434)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345556899988889988899999999999999999999999987 000 01123345
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHH-HHHHHHHHHHHHHHhhh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVN-QLFIVTGALFAYVIGAL 150 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~ 150 (308)
++.+...+....++.|.+|++.|+...++. +++..++..++|.+...
T Consensus 343 ~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~ 390 (434)
T PRK15075 343 FLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW 390 (434)
T ss_pred HHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence 555555556667889999999999998885 44444444555555544
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3e-06 Score=79.30 Aligned_cols=104 Identities=14% Similarity=-0.006 Sum_probs=90.1
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHHHHh
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFLAGC 104 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l~G~ 104 (308)
.+++...|.++.+.|.....+.++..++.++.|++.||+|+|+.+ +......++.|+
T Consensus 284 ~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~ 363 (495)
T PRK14995 284 QELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGF 363 (495)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 355667899999999999999999999999999999999998877 233445678899
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+.|...+.....+.+..|+++++...++.+....+|..+++.+.+.+
T Consensus 364 g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 364 SAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred hHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888999999999999999999999999988887664
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.5e-06 Score=77.48 Aligned_cols=112 Identities=19% Similarity=0.170 Sum_probs=79.3
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccchH-----------------------HHHHHHHHHH
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV--ARKGAA-----------------------PLLDFGRFLA 102 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~--Grr~~~-----------------------~~~~~~r~l~ 102 (308)
+++.+++|++..+.+...+.+.++..+|.++.|+++||+ ++|+.. ....+..+..
T Consensus 268 ~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (434)
T PRK11663 268 LYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTI 347 (434)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence 345577899999999999999999999999999999998 332221 0011111222
Q ss_pred HhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
|++.............|.+|++.|+...++.+....+|..++|.+.+.+ +|+..+++
T Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~ 408 (434)
T PRK11663 348 GFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVV 408 (434)
T ss_pred HHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHH
Confidence 2222111223345668999999999999999999999998887776654 78877766
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-06 Score=77.49 Aligned_cols=44 Identities=18% Similarity=0.006 Sum_probs=36.5
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA 92 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~ 92 (308)
.+.++.|++++++|.+.++..+..++.+++.|.++||+|.|+-+
T Consensus 33 WL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~L 76 (412)
T PF01306_consen 33 WLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHL 76 (412)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHH
T ss_pred HHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHH
Confidence 44456899999999999999999999999999999999977755
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=5e-06 Score=75.08 Aligned_cols=101 Identities=17% Similarity=0.089 Sum_probs=87.9
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhcc
Q 048448 50 IMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVM 109 (308)
Q Consensus 50 l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~ 109 (308)
..++.|.++.+.|.+.++..++.+++.++.+++.||+|+|+.+ +.+++.+++.|++.|..
T Consensus 231 ~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~ 310 (382)
T TIGR00902 231 YWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVC 310 (382)
T ss_pred HHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999988 56777899999999999
Q ss_pred ccchhhhhhccCCCCCchhHHHHHH-HHHHHHHHHHHHHhhhh
Q 048448 110 SYVVPVYIAEITPKNLRAALATVNQ-LFIVTGALFAYVIGALM 151 (308)
Q Consensus 110 ~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~ 151 (308)
.+....++.+. |++.|++..++++ ....+|..+++.+++.+
T Consensus 311 ~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l 352 (382)
T TIGR00902 311 HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFI 352 (382)
T ss_pred HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 9999999999876 45677777777777765
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.2e-06 Score=76.28 Aligned_cols=105 Identities=11% Similarity=-0.044 Sum_probs=69.2
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----H----H---HHH-H-----------HHH-
Q 048448 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----P----L---LDF-G-----------RFL- 101 (308)
Q Consensus 46 ~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----~----~---~~~-~-----------r~l- 101 (308)
..+++.+++|.+..+.+...++..++..+++++.|+++||+|||+.+ . . ++. . -.+
T Consensus 266 lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (432)
T PRK10406 266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMC 345 (432)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34456667899988888888888888888999999999999999876 0 0 000 0 000
Q ss_pred HHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHH-HHHHHHHHhhh
Q 048448 102 AGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVT-GALFAYVIGAL 150 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~ 150 (308)
.++..+...+....+..|++|++.|++..++.+....+ +....+.+...
T Consensus 346 ~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~ 395 (432)
T PRK10406 346 ALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS 395 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH
Confidence 11122223345567789999999999999997654332 22234444443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.8e-05 Score=66.64 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=63.3
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHHHHHHHHHHhhhhcc
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLLDFGRFLAGCGIGVM 109 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~~r~l~G~~~g~~ 109 (308)
.+-+++|++..+++.+..+.+....+.+.+.|.++||+|||+.. ..++++|++.|++....
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999977 88999999999999999
Q ss_pred ccchhhhhh
Q 048448 110 SYVVPVYIA 118 (308)
Q Consensus 110 ~~~~~~~~~ 118 (308)
+.+..+|..
T Consensus 139 fS~FEsW~V 147 (354)
T PF05631_consen 139 FSAFESWMV 147 (354)
T ss_pred HHHHHHHHH
Confidence 988888764
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.8e-06 Score=76.17 Aligned_cols=104 Identities=18% Similarity=0.140 Sum_probs=77.5
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------H-----------HHHHHHHHHHhh--
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------P-----------LLDFGRFLAGCG-- 105 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------~-----------~~~~~r~l~G~~-- 105 (308)
|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+ . ...+.-++.|++
T Consensus 255 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (426)
T PRK12307 255 PTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMAT 334 (426)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 444455788888999999999999999999999999999999877 0 001111222222
Q ss_pred hhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 106 IGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 106 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
..+..+..+.++.|.+|++.||+..++......+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 335 NVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred cccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 1223345667889999999999999998888888888888877665
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.9e-05 Score=69.38 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=68.8
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhh----cccccchH---------------------------HHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIAD----WVARKGAA---------------------------PLL 95 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d----~~Grr~~~---------------------------~~~ 95 (308)
..++.+.+|+++..+|.+..+.-+.-++..++.|+++| |+|||+.. ..+
T Consensus 30 ~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~ 109 (473)
T PRK10429 30 MYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFV 109 (473)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 45666778999999999999999999999999999999 56996644 011
Q ss_pred HHHHHHHHhhhhccccchhhhhhccC-CCCCchhHHHHHHHHHHHHHHHH
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEIT-PKNLRAALATVNQLFIVTGALFA 144 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~ 144 (308)
++.-++.+++.........++..|.. ++++|.+..++-..+..+|.++.
T Consensus 110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~ 159 (473)
T PRK10429 110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVT 159 (473)
T ss_pred HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333344444445567778888 58899988887555555554443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.2e-05 Score=71.10 Aligned_cols=96 Identities=16% Similarity=0.042 Sum_probs=73.8
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------H------HHHHHH
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------P------LLDFGR 99 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~------~~~~~r 99 (308)
.+..+.|++..++.+++....+...+..+++.++.||+|||+.+ . ..+++.
T Consensus 295 ~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~ 374 (485)
T KOG0569|consen 295 SIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAI 374 (485)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57778899999999999999999999999999999999999988 1 122333
Q ss_pred HHHHhhhh-ccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHH
Q 048448 100 FLAGCGIG-VMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFA 144 (308)
Q Consensus 100 ~l~G~~~g-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~ 144 (308)
++..++.+ +.-|+.+-..+|++|++.|+.+.++......+..++.
T Consensus 375 ~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv 420 (485)
T KOG0569|consen 375 FLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIV 420 (485)
T ss_pred HHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHH
Confidence 33333222 2357788899999999999999988777666655543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.7e-06 Score=73.19 Aligned_cols=97 Identities=25% Similarity=0.311 Sum_probs=86.0
Q ss_pred ccccccCCC-hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHHHHh
Q 048448 49 GIMADLKES-YAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFLAGC 104 (308)
Q Consensus 49 ~l~~~~~l~-~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l~G~ 104 (308)
++.+++|.+ ..+.+.+.++..++..++.++.|++.||+|+|+.. ...++.-++.|+
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 311 (352)
T PF07690_consen 232 YLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGF 311 (352)
T ss_dssp HCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHH
T ss_pred hhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 357888999 78999999999999999999999999999987655 344556778999
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHH
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAY 145 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~ 145 (308)
+.+...+....++.|..|+++||+..++.+....+|..++|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 312 GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999998876
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.4e-06 Score=75.82 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=97.3
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccchH-----------------------HH
Q 048448 40 KEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV--ARKGAA-----------------------PL 94 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~--Grr~~~-----------------------~~ 94 (308)
+|......-++.+..|.+..+.++..+.+-++.++|++++||++||+ |||..+ .+
T Consensus 269 ~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l 348 (448)
T COG2271 269 YGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLL 348 (448)
T ss_pred HHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHH
Confidence 34444555578888999999999999999999999999999999996 788766 45
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHH-HHHHHHHHhhhh----hhHHHHHh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVT-GALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~----~w~~~~~~ 159 (308)
..++-+++|+..-+...+......|..|++--|++.++...+..+ |...+...-+.+ +|...|++
T Consensus 349 ~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~ 418 (448)
T COG2271 349 DAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIV 418 (448)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHH
Confidence 556677889887777778888889999999999999999988877 766665544443 88887776
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=74.42 Aligned_cols=105 Identities=18% Similarity=0.150 Sum_probs=93.8
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccc--chH----------------------------HHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARK--GAA----------------------------PLLD 96 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr--~~~----------------------------~~~~ 96 (308)
..+..+++|++..+...+..+..+..++|++++|++.||+|.| +++ +.+.
T Consensus 305 ~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~ 384 (477)
T PF11700_consen 305 GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW 384 (477)
T ss_pred HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence 3455668999999999999999999999999999999999999 666 4566
Q ss_pred HHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 97 FGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 97 ~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+.-++.|+..|+..+..=++.+|+.|+.+.+...+++....-....++|++-+.+
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i 439 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI 439 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777899999999999999999999999999999999999999889998887766
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=75.05 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=82.4
Q ss_pred ccccccccCCChhHHHHHHH-HHHHHHHHHHHHHhhhhhcccccchH----H--------------------HHHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGS-ILTIGAIIGAITSGRIADWVARKGAA----P--------------------LLDFGRFL 101 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s-~~~~g~~~g~~~~g~l~d~~Grr~~~----~--------------------~~~~~r~l 101 (308)
.+++.+++|+++.+.+++.. ...++.++|.+++|+++||+|+|+.+ . .+.+.-++
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 44566778999999999874 56689999999999999999998866 0 00011122
Q ss_pred HHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 102 AGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
..++.|...+....+..+..+++.+++..++.+....+|..+++.+.+.+ +|+..|.+
T Consensus 326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~ 387 (491)
T PRK11010 326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLF 387 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 22223444556677788899999999999999988888877666655554 78877766
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.1e-05 Score=75.61 Aligned_cols=85 Identities=18% Similarity=0.108 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHHHHhhhhccccchhhhhhccCC
Q 048448 65 GSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITP 122 (308)
Q Consensus 65 ~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~ 122 (308)
..+..+..+++.++.+++.||+|||+.+ +..++.-++.+++.+..++....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3445667778889999999999999987 112223344555666667788899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048448 123 KNLRAALATVNQLFIVTGALFAYVIGA 149 (308)
Q Consensus 123 ~~~r~~~~~~~~~~~~~g~~~~~~l~~ 149 (308)
.+.|+.+.++.+....+|.+++|.+..
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999998876
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=67.35 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=83.6
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------------------------HHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------------PLLDFGR 99 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------------~~~~~~r 99 (308)
-|.+++.+|++.++...+.++-.+|..+| ++.|.+.|++|++.++ +.+.+..
T Consensus 25 S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~ 103 (250)
T PF06813_consen 25 SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFL 103 (250)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHH
Confidence 34799999999999999999999999886 8889999999999987 5666666
Q ss_pred HHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
++.|.+.+...+.......+.+| ++||.+.++.-....++..+-..+...+
T Consensus 104 ~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 104 FLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred HHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHH
Confidence 77777776666666666778887 5799999999988888877755554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.9e-06 Score=76.60 Aligned_cols=114 Identities=17% Similarity=0.101 Sum_probs=73.9
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--hHH-----------------------HHHHHHH
Q 048448 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKG--AAP-----------------------LLDFGRF 100 (308)
Q Consensus 46 ~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~--~~~-----------------------~~~~~r~ 100 (308)
...++.+..|.++.+.++..+++.++.+++.+++|+++||+|+++ ... ...+..+
T Consensus 274 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (438)
T TIGR00712 274 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMI 353 (438)
T ss_pred HHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 334555667899999999999999999999999999999996543 210 0001112
Q ss_pred HHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHH-HHHHHHHhhhh----hhHHHHHh
Q 048448 101 LAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTG-ALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 101 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g-~~~~~~l~~~~----~w~~~~~~ 159 (308)
+.|++..+..........|.+|++.|+...++.+....+| ..+++.+.+.+ +|...+++
T Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~ 417 (438)
T TIGR00712 354 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 417 (438)
T ss_pred HHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHH
Confidence 2232221111122345679999999999999987766555 35566555443 66666554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-05 Score=71.40 Aligned_cols=111 Identities=11% Similarity=-0.037 Sum_probs=80.3
Q ss_pred ccccccCCChhHHHHHHHHHH-HHHHHHHHHHhhhhhcccccchHH-----H---------------------HHHHHHH
Q 048448 49 GIMADLKESYAEYSLFGSILT-IGAIIGAITSGRIADWVARKGAAP-----L---------------------LDFGRFL 101 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~-~g~~~g~~~~g~l~d~~Grr~~~~-----~---------------------~~~~r~l 101 (308)
....|.|+++++.+++..+.. .+..++.++.|++.||+|+|+.+. . +.....+
T Consensus 233 ~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (390)
T TIGR02718 233 LYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAF 312 (390)
T ss_pred HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHH
Confidence 344568999999999888776 577788999999999999998870 0 0011112
Q ss_pred HHhhhhccccchhhhhhccCCC-CCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 102 AGCGIGVMSYVVPVYIAEITPK-NLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.+++.|...+.....+.+..++ +.+++..++.+....+|..+++.+++.+ +|+..++.
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~ 375 (390)
T TIGR02718 313 GSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLS 375 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 2333455555666666677665 8899999999999999999998887765 56666555
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-07 Score=79.06 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=82.2
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccchH-----------------------HHHHHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADW-VARKGAA-----------------------PLLDFGRFLA 102 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~-~Grr~~~-----------------------~~~~~~r~l~ 102 (308)
..+...+.+++.++..++.+++..-.++-++++|++.|| +|.|..- |++.++||+.
T Consensus 67 q~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~F 146 (459)
T KOG4686|consen 67 QIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLF 146 (459)
T ss_pred hhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheee
Confidence 455666777888888899999999999999999999996 5776433 8899999999
Q ss_pred HhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHH
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALF 143 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~ 143 (308)
|+|.-...+.-..|+.-|+..++.+..+++......+|..+
T Consensus 147 GIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv 187 (459)
T KOG4686|consen 147 GIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV 187 (459)
T ss_pred ccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence 99988888888999999999999999999987777777554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.1e-06 Score=74.58 Aligned_cols=112 Identities=16% Similarity=0.085 Sum_probs=76.6
Q ss_pred ccccccc--CCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHH-HHHHHHHHh
Q 048448 48 FGIMADL--KESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLL-DFGRFLAGC 104 (308)
Q Consensus 48 ~~l~~~~--~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~-~~~r~l~G~ 104 (308)
|.+.+++ +.+..+.+...+...++..+|.++.|+++||+++|+.. ... +.+-++.++
T Consensus 266 p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (412)
T TIGR02332 266 PQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASM 345 (412)
T ss_pred HHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344443 66778889999999999999999999999999977642 000 001111122
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT 159 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~ 159 (308)
+.....+.......|.+|++.|+...++.+....+|.+++|.+.+.+ +|++.+.+
T Consensus 346 g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~ 405 (412)
T TIGR02332 346 GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWF 405 (412)
T ss_pred HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHH
Confidence 22222233334456788999999999999999999999988776554 47766544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=81.63 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=86.5
Q ss_pred ccccccccCCChh-HHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhh
Q 048448 47 QFGIMADLKESYA-EYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCG 105 (308)
Q Consensus 47 ~~~l~~~~~l~~~-~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~ 105 (308)
..++.+.++++.. +.+++.++..++.++++++.|++.||+++++++ +.++++.++.|++
T Consensus 256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 335 (1146)
T PRK08633 256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFS 335 (1146)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4455677899988 999999999999999999999999999988766 3445667788888
Q ss_pred hhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 106 IGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 106 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
.+...+...+++.+..|++.||+..++.+....+|.++++.++..
T Consensus 336 ~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~ 380 (1146)
T PRK08633 336 AGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTL 380 (1146)
T ss_pred HHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999988888877665555443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.5e-05 Score=74.82 Aligned_cols=85 Identities=14% Similarity=0.082 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchH---------H--HHH-----------HHHHHHH--hhhhccccchhhhhhccC
Q 048448 66 SILTIGAIIGAITSGRIADWVARKGAA---------P--LLD-----------FGRFLAG--CGIGVMSYVVPVYIAEIT 121 (308)
Q Consensus 66 s~~~~g~~~g~~~~g~l~d~~Grr~~~---------~--~~~-----------~~r~l~G--~~~g~~~~~~~~~~~e~~ 121 (308)
.+..++.+++.++.++++||+|||+++ . .+. +..++.. ++..+..+..+.+.+|.+
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 345567777889999999999999987 0 000 0011111 111223445667789999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 122 PKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 122 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
|.+.|++..++.+....+|.++++.+...
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~ 450 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLY 450 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 99999999999998888888887765443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.2e-06 Score=75.99 Aligned_cols=112 Identities=9% Similarity=-0.068 Sum_probs=77.1
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccch------H---------------------HHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGA------A---------------------PLLDFGR 99 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~------~---------------------~~~~~~r 99 (308)
.+++.+++|++..+.+.+.+++.++..++.+++|+++||+|||+. + ...++.-
T Consensus 276 p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~ 355 (476)
T PLN00028 276 AEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVM 355 (476)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 345567789999999999999999999999999999999997621 1 0111122
Q ss_pred HHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHh
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL---MSWRILALT 159 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~---~~w~~~~~~ 159 (308)
++.+++.+...+....++.+.. ++.||...++.+.+..+|..+++.+... .+|+..|++
T Consensus 356 ~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~ 417 (476)
T PLN00028 356 ILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISL 417 (476)
T ss_pred HHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHH
Confidence 3334443333444455555654 4689999999988888888887776432 257766655
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00012 Score=67.64 Aligned_cols=102 Identities=12% Similarity=0.016 Sum_probs=67.3
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc----cccchH-------------H---------------H
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV----ARKGAA-------------P---------------L 94 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~----Grr~~~-------------~---------------~ 94 (308)
..++.+.+|+++.++|.+.++..+..++..++.|+++||. |||+.. . .
T Consensus 32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (448)
T PRK09848 32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY 111 (448)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence 4577788899999999999999999999999999999997 666532 0 0
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCC-CCCchhHHHHHHHH-----HHHHHHHHHHHh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITP-KNLRAALATVNQLF-----IVTGALFAYVIG 148 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~-----~~~g~~~~~~l~ 148 (308)
.++.-++.+++.+...+...++..|... +++|....++-..+ ..++..+++.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~ 171 (448)
T PRK09848 112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIK 171 (448)
T ss_pred HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112234455555555555555566554 46787776654433 223444455544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.1e-05 Score=73.00 Aligned_cols=105 Identities=14% Similarity=0.079 Sum_probs=85.2
Q ss_pred cccccc-ccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHHH
Q 048448 47 QFGIMA-DLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFLA 102 (308)
Q Consensus 47 ~~~l~~-~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l~ 102 (308)
.|++.+ .+|.++.+.++......++..++.++.+++.||+|||+++ +.+.+.-++.
T Consensus 284 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (471)
T PRK10504 284 TPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQ 363 (471)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 344444 5788999999999999999999999999999999999887 1123345566
Q ss_pred HhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
|++.+...+....+..+..|++.++...++.+....+|..+++.+.+.+
T Consensus 364 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 364 GMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788888888999999999999999999988888887776654
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-05 Score=76.17 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=106.0
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------- 92 (308)
..+...++....+..+++.++++..+.|++.+.+-+|..+...+..++..|.-|-+.+
T Consensus 108 ~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~ 187 (735)
T KOG3626|consen 108 AQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSG 187 (735)
T ss_pred HHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcC
Confidence 5666678888889999999999999999999999999999999999999987777666
Q ss_pred --------------------------------------------------HHHHHHHHHHHhhhhccccchhhhhhccCC
Q 048448 93 --------------------------------------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITP 122 (308)
Q Consensus 93 --------------------------------------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~ 122 (308)
.+++++.++.|+|....++...+|+-|...
T Consensus 188 ~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk 267 (735)
T KOG3626|consen 188 PYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVK 267 (735)
T ss_pred cchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccccc
Confidence 467788999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 123 KNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 123 ~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+++-+...++......+|.++|.+++...
T Consensus 268 ~~~SplYlgi~~~~~~lGPaiGfllgS~~ 296 (735)
T KOG3626|consen 268 KKNSPLYLGILYSMAILGPAIGFLLGSFC 296 (735)
T ss_pred ccCCcHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999988764
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-05 Score=69.54 Aligned_cols=116 Identities=20% Similarity=0.160 Sum_probs=97.0
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HH
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PL 94 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~ 94 (308)
.|+...-.. ....+-..++|++..+..++.....+.+++|++++|++.||+|.|+++ ..
T Consensus 265 ~DGv~til~-~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~ 343 (438)
T COG2270 265 IDGVNTILA-MGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELD 343 (438)
T ss_pred HhhHHHHHH-HHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHH
Confidence 565543332 222344568999999999999999999999999999999999999887 44
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+.++-.+.|...|+..+..=+|.++..|+++-+...++++...-.+..++|.+-..+
T Consensus 344 f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~ 400 (438)
T COG2270 344 FWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVI 400 (438)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHH
Confidence 555667889999999999999999999999999999999999888888888876654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.2e-06 Score=75.90 Aligned_cols=120 Identities=20% Similarity=0.154 Sum_probs=93.2
Q ss_pred cccccccccccccccC----CChhHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccchH----------------------
Q 048448 40 KEQQNPTQFGIMADLK----ESYAEYSLFGSILTIGAIIGAITSGRIADWV-ARKGAA---------------------- 92 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~----l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~-Grr~~~---------------------- 92 (308)
+|.-+...-++..+++ ++++++..+.++|..-.-+.++++||++||+ |+|+++
T Consensus 38 YGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~ 117 (498)
T COG3104 38 YGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGP 117 (498)
T ss_pred hhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc
Confidence 4444444445555544 9999988888888877778889999999996 999988
Q ss_pred HHHHHHHHHHHhhhhccccchhhhhhccCCCC--CchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 93 PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKN--LRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 93 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
..++++-.+.++|.|..-+....++.|.+|++ +|-...+++..+.++|.+++|.+..++ +|...|-.
T Consensus 118 ~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 118 GGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred cHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 25677777888999999999999999999863 355567777888888888888877766 77776655
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.7e-05 Score=71.68 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=80.6
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhcc
Q 048448 50 IMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVM 109 (308)
Q Consensus 50 l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~ 109 (308)
..++.|.++.+.+.+.++..++..++.++.+++.||+|+|+.+ +.+++..++.|++.+..
T Consensus 231 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 310 (382)
T PRK11128 231 YWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVC 310 (382)
T ss_pred HHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3356899999999999999999999999999999999999987 55677888999998888
Q ss_pred ccchhhhhhccCCCCCchhHHHHHH-HHHHHHHHHHHHHhhhh
Q 048448 110 SYVVPVYIAEITPKNLRAALATVNQ-LFIVTGALFAYVIGALM 151 (308)
Q Consensus 110 ~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~~ 151 (308)
.+....++.+. +++++++..++.+ ....+|..+++.+++.+
T Consensus 311 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l 352 (382)
T PRK11128 311 HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFL 352 (382)
T ss_pred HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888886 4555678888775 44556666666666655
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.6e-05 Score=70.96 Aligned_cols=91 Identities=19% Similarity=0.163 Sum_probs=72.3
Q ss_pred cccccccCCChhHHHHHHHHHH-HHHHHHHHHHhhhhhcccccchH---------------HH----------------H
Q 048448 48 FGIMADLKESYAEYSLFGSILT-IGAIIGAITSGRIADWVARKGAA---------------PL----------------L 95 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~-~g~~~g~~~~g~l~d~~Grr~~~---------------~~----------------~ 95 (308)
+....++|.++.+.+.+.++.. ++.+++.+++|++.||+|||+.+ .. +
T Consensus 233 ~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (356)
T TIGR00901 233 TLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLML 312 (356)
T ss_pred HHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence 3344458999999998887665 67889999999999999998876 10 2
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHH
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIV 138 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~ 138 (308)
+.+.++.+++.+...+...+++.|.+|+++||+..++.+...+
T Consensus 313 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 313 FLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2234566788888899999999999999999999998876543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.1e-06 Score=74.27 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=86.5
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------- 92 (308)
..|...++.+....++++++++++.+.+.+.+.+.+...+..+.+|+++||+|.++++
T Consensus 230 tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~ 309 (417)
T COG2223 230 TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFG 309 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccc
Confidence 4566677777777789999999999999999999999999999999999999988877
Q ss_pred ---------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHH
Q 048448 93 ---------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILAL 158 (308)
Q Consensus 93 ---------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~ 158 (308)
..++...+..|+|.|..+-..+.+ +|+ +-|...++......+|.+..|..-... ++...|+
T Consensus 310 ~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~i----f~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~ 384 (417)
T COG2223 310 HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVI----FPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFM 384 (417)
T ss_pred cCcchHHHHHHHHHHHHHhccCcchheeechHH----HHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHH
Confidence 234445556666666555444443 433 557788888887777766555443332 3555554
Q ss_pred h
Q 048448 159 T 159 (308)
Q Consensus 159 ~ 159 (308)
+
T Consensus 385 ~ 385 (417)
T COG2223 385 L 385 (417)
T ss_pred H
Confidence 4
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=7e-05 Score=66.95 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=89.1
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------------------HHHHHH
Q 048448 40 KEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------PLLDFG 98 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------~~~~~~ 98 (308)
+...+..-|.+++..|++....+++..++.++..+|.+++|++.|| +.|+.+ +..++.
T Consensus 228 F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~ 306 (394)
T COG2814 228 FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALAL 306 (394)
T ss_pred hhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3333455668888999999999999999999999999999999999 777776 344444
Q ss_pred HHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 99 RFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 99 r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
-++.|++.+..........++ ..++.+....++....+++|..+|..+++.. ++....++
T Consensus 307 ~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~ 370 (394)
T COG2814 307 LFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWV 370 (394)
T ss_pred HHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 555777766666666666666 4457788899998888888888877777665 55555544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.9e-06 Score=69.28 Aligned_cols=103 Identities=12% Similarity=-0.052 Sum_probs=86.0
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHHHHHHHHHHhhhhcc
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLLDFGRFLAGCGIGVM 109 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~~r~l~G~~~g~~ 109 (308)
..++.+|+++...+.+.+..+.-.++.+++.|.++|++|++... +.=.++..++|+.....
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysll 369 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLL 369 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHH
Confidence 56788999999999999999999999999999999999999765 22233455677776655
Q ss_pred ccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 110 SYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 110 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
....+..++-..|++..|++.++.+...++|..+.+++++.+
T Consensus 370 AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 370 ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 555667777888999999999999999999999999988876
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.2e-05 Score=67.59 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=76.3
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------------HHHHHHHHHHH
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------------PLLDFGRFLAG 103 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------------~~~~~~r~l~G 103 (308)
.+.+++|.++.+.+.+.+...++..++.++.|++.||+|+|+.+ ..+++..++.|
T Consensus 232 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 311 (385)
T TIGR00710 232 VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVG 311 (385)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999866 11222345567
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHH-HHHHHHHHHHh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFI-VTGALFAYVIG 148 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~-~~g~~~~~~l~ 148 (308)
++.+...+.......|..| ++|+...++.+... ..|.+.++.++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 312 IGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888876 57899999877655 44566666655
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.6e-05 Score=67.97 Aligned_cols=105 Identities=16% Similarity=0.062 Sum_probs=77.6
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccchH-------------------HHHHHHHHHHHhhh
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVA-RKGAA-------------------PLLDFGRFLAGCGI 106 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~G-rr~~~-------------------~~~~~~r~l~G~~~ 106 (308)
.|.+.++.|.+..+.+.+.++..++.++++++.|++.||++ ||+.+ ......-++.|++.
T Consensus 220 lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 299 (355)
T TIGR00896 220 LPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQ 299 (355)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 34445567999999999999999999999999999999994 55443 00111345678888
Q ss_pred hccccchhhhhhccCC-CCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 107 GVMSYVVPVYIAEITP-KNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 107 g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
|...+.....+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 300 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 300 GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777776665444 56678888888877777777787776654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.1e-05 Score=70.68 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=90.3
Q ss_pred cccccc-cccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHh
Q 048448 46 TQFGIM-ADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGC 104 (308)
Q Consensus 46 ~~~~l~-~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~ 104 (308)
.+|.+. +.+|.++...|++.+++.+|.++|++..+++.+++++++.+ +..++.-++.|+
T Consensus 240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~ 319 (524)
T PF05977_consen 240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGA 319 (524)
T ss_pred hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 345554 56899999999999999999999999999999999988776 555667788899
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL----MSWRILALT 159 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~----~~w~~~~~~ 159 (308)
+.........+.+.+..|++.||+.+++++.....+..+|..+.+. ++-+..+.+
T Consensus 320 ~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~ 378 (524)
T PF05977_consen 320 AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLI 378 (524)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 8888888888899999999999999999887666655555555444 355544443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.9e-05 Score=68.74 Aligned_cols=95 Identities=22% Similarity=0.260 Sum_probs=76.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------------------HHHHHHHHHHHhhhhccccchhh
Q 048448 57 SYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------PLLDFGRFLAGCGIGVMSYVVPV 115 (308)
Q Consensus 57 ~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------~~~~~~r~l~G~~~g~~~~~~~~ 115 (308)
++...+++.++..++.+++.++.++++||+|+|+++ +.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888999999999999999999999877 23344556777888888888888
Q ss_pred hhhccCC-------CCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 116 YIAEITP-------KNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 116 ~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+++|..+ ++.+|...++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888765 56679999999998888888887776654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.5e-05 Score=69.86 Aligned_cols=113 Identities=7% Similarity=-0.014 Sum_probs=82.6
Q ss_pred CCcccccccccccccc--ccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHH
Q 048448 37 NQAKEQQNPTQFGIMA--DLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLL 95 (308)
Q Consensus 37 ~~~~~~~~~~~~~l~~--~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~ 95 (308)
+.+.+.......++.+ .+|+++.+.+...+.+..+..+|.++.+++.||+|+|+.+ ...
T Consensus 154 g~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~ 233 (310)
T TIGR01272 154 GAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA 233 (310)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3444444444456653 3689999999999999999999999999999999998877 111
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
..+-++.|++.+..+|...+...+..|++ .+.+.++. ....+|..+.|.+.+.+
T Consensus 234 ~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~l 287 (310)
T TIGR01272 234 MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSL 287 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHH
Confidence 23445678899999999998888887764 34555665 44557777777655544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=66.73 Aligned_cols=104 Identities=12% Similarity=0.016 Sum_probs=82.9
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHHHHHHHHHHhhhhc
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLLDFGRFLAGCGIGV 108 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~~r~l~G~~~g~ 108 (308)
+.+++.+|.++.+.|++.+...+|.++|+++.+++.||.++++++ +..++.-++.|++.+.
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILMGLVVLLMALQHSLLPAYPLLILIGALGGF 309 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 345567899999999999999999999999999999999988755 2234455678888887
Q ss_pred cccchhhhhhccCCCCC-chhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 109 MSYVVPVYIAEITPKNL-RAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 109 ~~~~~~~~~~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
..+...+.+.+..|++. +|+..++.+....+|..++..+...+
T Consensus 310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 77777788888766654 79999999988888887777666544
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.9e-05 Score=67.78 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=78.3
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------------HHHHHHHHHHH
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------------PLLDFGRFLAG 103 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------------~~~~~~r~l~G 103 (308)
.+.+++++++.+.++......++.+++.++.+++.||+|+|+.+ ..++++-++.|
T Consensus 241 ~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 320 (406)
T PRK15402 241 ILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYA 320 (406)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 34567899999999888888889999999999999999998876 11233445667
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
++.+...+....... ..++++||+..++.+....+|..+++.+...+
T Consensus 321 ~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 321 FGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred HHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777666655555443 34458999999999999989988888887765
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.8e-05 Score=68.00 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=80.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhccccchh
Q 048448 55 KESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSYVVP 114 (308)
Q Consensus 55 ~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~~~~ 114 (308)
+.+....+.+.++..+...++.+..+++.||+|||+.+ +.+++.+++.|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778888888899999999999999999999977 4456667788887766655666
Q ss_pred hhhhccCCCCCchhHHHH-HHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 115 VYIAEITPKNLRAALATV-NQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 115 ~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.+..+..+++.++...+. ++....+|..+++.+.+.+ +|+..|++
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~ 379 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLV 379 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHH
Confidence 677788888888876665 5677777777777666654 77777766
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=66.88 Aligned_cols=112 Identities=11% Similarity=0.009 Sum_probs=83.2
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhh
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGI 106 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~ 106 (308)
.|.+.+++|+++.+.+.+.+.+.++..++.++.+++.||.+++..+ +.+.+..++.|++.
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~ 319 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF 319 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3556678899999999999999999999999999999997655433 33444567788888
Q ss_pred hccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 107 GVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 107 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+...+...+++.+..|+ ++++..++......+|..+++.+++.+ +++..+..
T Consensus 320 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~ 375 (394)
T PRK10213 320 ALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLML 375 (394)
T ss_pred HhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHH
Confidence 88888888888888874 455666666666677777777666655 55554444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.3e-05 Score=67.12 Aligned_cols=111 Identities=17% Similarity=0.197 Sum_probs=72.2
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------------------HHHHHHHHHHHhh
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------PLLDFGRFLAGCG 105 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------~~~~~~r~l~G~~ 105 (308)
.+.+.+..|.++.+.+++.+...++..++.++.|++.||+|+|+.+ +..++..++.+++
T Consensus 223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 302 (382)
T PRK10091 223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG 302 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556666899999999999999999999999999999999999877 1122223333444
Q ss_pred hhccccchh-hhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh
Q 048448 106 IGVMSYVVP-VYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT 159 (308)
Q Consensus 106 ~g~~~~~~~-~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~ 159 (308)
.+...+... ....+..+++.++.. ..+....+|..+++.+++.+ +|+..+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~ 360 (382)
T PRK10091 303 LFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALP 360 (382)
T ss_pred HHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHH
Confidence 333332222 233344444444443 33556677777777776654 56666655
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0002 Score=64.35 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=82.6
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------------HHHHHHH
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------------PLLDFGR 99 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------------~~~~~~r 99 (308)
.+...-++ +.....|..-+|++.++...+++-|+.|++|-|... .....+.
T Consensus 69 n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq 147 (480)
T KOG2563|consen 69 NYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQ 147 (480)
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhH
Confidence 34445566 777788899999999999999999999999999877 2566777
Q ss_pred HHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 100 FLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 100 ~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
.+.+.+.......-....+-|+++++|..+.++-..+..+|..++.++...+
T Consensus 148 ~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 148 SIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred HHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence 8888887766666667777899999999999988888888888877765543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.1e-05 Score=67.68 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=69.1
Q ss_pred cccccccCCChhHHHHHHHHHH-HHHHHHHHHHhhhhhcccccchH------------------------HHHHHHH---
Q 048448 48 FGIMADLKESYAEYSLFGSILT-IGAIIGAITSGRIADWVARKGAA------------------------PLLDFGR--- 99 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~-~g~~~g~~~~g~l~d~~Grr~~~------------------------~~~~~~r--- 99 (308)
+.+.+++|+++.+.+++..+.. ++.++|.+++|++.||+|+|+.+ +.+++.-
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 4566778999999999886654 56899999999999999998876 0011111
Q ss_pred -HHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHh
Q 048448 100 -FLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALMSWRILALT 159 (308)
Q Consensus 100 -~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~w~~~~~~ 159 (308)
+..|++.+...+....++.+.+|.+.++...++...+...+..++..+....+|+..|..
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~ 374 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLM 374 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 223344444455556666666665554443333323332233344444445589887776
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=65.08 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=44.1
Q ss_pred cccccccceecccCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048448 247 GMGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTWSS 295 (308)
Q Consensus 247 g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~ 295 (308)
+....+-.+.++++|++.-+...|+.+..++.+++++|++++.+.+..+
T Consensus 357 ~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 357 GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 3466777899999999999999999999999999999999999988665
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00066 Score=60.59 Aligned_cols=102 Identities=14% Similarity=0.213 Sum_probs=83.4
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccc-----ccchH-------------------------------
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVA-----RKGAA------------------------------- 92 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~G-----rr~~~------------------------------- 92 (308)
.+..|++++..-.+...+..++.... .+..|+.+|+.+ ||.-+
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~ap~-R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVAPL-RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHHH-HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 35678899888888888887776664 789999999998 77666
Q ss_pred ------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 93 ------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 93 ------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
....+.-.+.|+|.+...+...++++|..|+++|++..++......+|.+++..+.+.+
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~l 148 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRL 148 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344456788888888899999999999999999999999988889988887776654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=66.18 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=76.1
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHHHHhhh
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFLAGCGI 106 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l~G~~~ 106 (308)
+++..+|.++...++......++.+++.++.+++.||+|+|+++ +.+++..++.|+|.
T Consensus 254 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~ 333 (448)
T PRK09848 254 YVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQ 333 (448)
T ss_pred eEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 34445676665555555555677888999999999999999877 22344456788888
Q ss_pred hccccchhhhhhccCCCC-------CchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 107 GVMSYVVPVYIAEITPKN-------LRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 107 g~~~~~~~~~~~e~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+...+...+..+|..|.+ .+|...++++....+|..+++.+...
T Consensus 334 ~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 334 GVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887653 45888899988888888887776554
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.1e-05 Score=68.00 Aligned_cols=102 Identities=24% Similarity=0.238 Sum_probs=81.2
Q ss_pred cccccc-cCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHHHHh
Q 048448 48 FGIMAD-LKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFLAGC 104 (308)
Q Consensus 48 ~~l~~~-~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l~G~ 104 (308)
++..++ ++.+ ...+.+..+..++.+++.++.++++||+|+|+++ +.+++.-++.|+
T Consensus 249 ~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi 327 (428)
T PF13347_consen 249 PYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGI 327 (428)
T ss_pred HHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHh
Confidence 344443 4544 5678888899999999999999999999999988 556667788999
Q ss_pred hhhccccchhhhhhccCCC-------CCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 105 GIGVMSYVVPVYIAEITPK-------NLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+.+........+++|..+. +..|...++.+....+|..++..+...
T Consensus 328 ~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 328 GYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred hhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999998873 445788888888888887777766554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00098 Score=60.99 Aligned_cols=101 Identities=22% Similarity=0.091 Sum_probs=76.8
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc----ccccchH---------------------------HHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADW----VARKGAA---------------------------PLL 95 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~----~Grr~~~---------------------------~~~ 95 (308)
+-+..+..|+++..+|.+..+.-+-=++..++.|.++|| +||++-. ...
T Consensus 36 l~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya 115 (467)
T COG2211 36 LFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYA 115 (467)
T ss_pred HHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHH
Confidence 335667789999999999999999999999999999996 5776655 333
Q ss_pred HHHHHHHHhhhhccccchhhhhhccC-CCCCchhHHHHHHHHHHHHHHHHHHH
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEIT-PKNLRAALATVNQLFIVTGALFAYVI 147 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~l 147 (308)
++.-.+.+++.......-.++..|+. ++++|.+..++-+.+..+|.++...+
T Consensus 116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~ 168 (467)
T COG2211 116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVL 168 (467)
T ss_pred HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666776666666667777765 46899999999998888886665443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=67.33 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=82.3
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------H-----------------------HHHHHHHH
Q 048448 52 ADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------P-----------------------LLDFGRFL 101 (308)
Q Consensus 52 ~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------~-----------------------~~~~~r~l 101 (308)
..+|.++.+.|.+.+...++.+++....+++.+|++.|+++ . .++..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 56899999999999999999999999999999999999887 0 01112234
Q ss_pred HHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 102 AGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
.+++.+........++.+.+|++.+|+..++.+...++|..+++.++..+
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777789999999999999999999999999988888776665
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00084 Score=61.95 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchH----------HHHHHHHH-----HHHh--hhhccccchhhhhhccCCCCCchhH
Q 048448 67 ILTIGAIIGAITSGRIADWVARKGAA----------PLLDFGRF-----LAGC--GIGVMSYVVPVYIAEITPKNLRAAL 129 (308)
Q Consensus 67 ~~~~g~~~g~~~~g~l~d~~Grr~~~----------~~~~~~r~-----l~G~--~~g~~~~~~~~~~~e~~~~~~r~~~ 129 (308)
...+..++.++..|.++|++|||..+ ......+. +.|+ +.+.......+++++....+.|...
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~~ 149 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFLLLGLSGGFSAIFSVGFAYVADISSEEERSSS 149 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhhcccccchhhhhhhhhhheeeccchhHHHHH
Confidence 34567777888999999999999988 11111111 2333 3345577788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh-----------hhcccccCc
Q 048448 130 ATVNQLFIVTGALFAYVIGALM----SWRILALT-----------GLFFIPESP 168 (308)
Q Consensus 130 ~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~-----------~~~~~~esp 168 (308)
.++.+..+..+..++|.++..+ +.-..+++ ..+++||+.
T Consensus 150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999998888888888887765 22222222 667888875
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00013 Score=75.24 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=84.0
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------HH-----------------------
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------PL----------------------- 94 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------~~----------------------- 94 (308)
..++.+.+|.++.+.+++.+++.+|.++|+++.|+++++.++++.+ ..
T Consensus 249 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 328 (1140)
T PRK06814 249 PLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVF 328 (1140)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhh
Confidence 3455566899999999999999999999999999999887766543 00
Q ss_pred --------HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 95 --------LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 95 --------~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+++..++.|++.+...+...+++.+.+|++.||+.+++.+....+|..+++++.+.+
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l 393 (1140)
T PRK06814 329 LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL 393 (1140)
T ss_pred hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 112345678888888888899999999999999999999988888877777665544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=68.17 Aligned_cols=112 Identities=21% Similarity=0.139 Sum_probs=77.0
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------------------HHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------------------PLL 95 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------------------~~~ 95 (308)
..++.+.+|.+..+.++..++..++..++.+++|+++||+++|+.. ...
T Consensus 285 p~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (465)
T TIGR00894 285 PTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLT 364 (465)
T ss_pred HHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 3456677899999999999999999999999999999998765321 001
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHh
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-------SWRILALT 159 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-------~w~~~~~~ 159 (308)
++.-.+.+.+.+...+.......|..|+ .+|...++.+....+|.++++.+...+ +|+..|++
T Consensus 365 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~ 434 (465)
T TIGR00894 365 IIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLI 434 (465)
T ss_pred HHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHH
Confidence 1111122222222333333344466654 889999999999999999988887653 37776666
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00022 Score=60.85 Aligned_cols=114 Identities=25% Similarity=0.318 Sum_probs=87.6
Q ss_pred cccccccccCCCh--hHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHH
Q 048448 46 TQFGIMADLKESY--AEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFL 101 (308)
Q Consensus 46 ~~~~l~~~~~l~~--~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l 101 (308)
..+.+..+++.+. ...++..+.+.++..++.++.|.+.||+|||+.+ ..+++.|++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLL 103 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3444555555554 4789999999999999999999999999999665 345557888
Q ss_pred HHhhhhccccchhhhhhccCCC-CCchhHHHHHHH-HHHHHHHHHHHHhhhh------hhHHHHHh
Q 048448 102 AGCGIGVMSYVVPVYIAEITPK-NLRAALATVNQL-FIVTGALFAYVIGALM------SWRILALT 159 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~-~~~~g~~~~~~l~~~~------~w~~~~~~ 159 (308)
.|++.+...+....++.|..|+ +.|+...+.... ...+|..+++.++..+ +|+..+.+
T Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (338)
T COG0477 104 QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL 169 (338)
T ss_pred HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 8999998999999999999998 678888887777 4667777776555443 68875555
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0018 Score=60.10 Aligned_cols=101 Identities=13% Similarity=-0.028 Sum_probs=73.4
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc----ccccchH---------------------------HHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADW----VARKGAA---------------------------PLL 95 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~----~Grr~~~---------------------------~~~ 95 (308)
..++.+..|+++..+|.+..+.-+.=++..++.|+++|| +|||+.. ..+
T Consensus 33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~ 112 (460)
T PRK11462 33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA 112 (460)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 446667789999999999999999999999999999996 6888765 112
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCC-CCCchhHHHHHHHHHHHHHHHHHHH
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITP-KNLRAALATVNQLFIVTGALFAYVI 147 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~l 147 (308)
++.-.+..++.........++..|..+ +++|++..++-..+..+|..+++.+
T Consensus 113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~ 165 (460)
T PRK11462 113 AITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL 165 (460)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223344444444455567778776 7899999999888888776665444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00031 Score=54.81 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHHHHHHHHHHhhhhccccchhhhhh
Q 048448 58 YAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLLDFGRFLAGCGIGVMSYVVPVYIA 118 (308)
Q Consensus 58 ~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~~r~l~G~~~g~~~~~~~~~~~ 118 (308)
+..--.-.++.+....+++++.+.+.+++|.|+.+ +.++.+-.+.|++.+..++....++.
T Consensus 36 ~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt 115 (156)
T PF05978_consen 36 AGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLT 115 (156)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence 33334455667777888888899999999999998 67788889999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 119 EITPKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 119 e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+..+++.|++..+++-.....+.++|.++...
T Consensus 116 ~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 116 SYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988777777777777665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00033 Score=63.60 Aligned_cols=104 Identities=13% Similarity=0.023 Sum_probs=76.4
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------------HHHHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------------PLLDFGRFL 101 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------------~~~~~~r~l 101 (308)
.|.+.++.|.++.+.++......++..+|.+..+++.||+|+|+.+ ..+++.-.+
T Consensus 226 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (401)
T PRK11043 226 SPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCV 305 (401)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3445567899999999988888889999999999999999998854 111223345
Q ss_pred HHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 102 AGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
.|++.+...+.......+..| ++||+..++.+.....+...++.+...+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 306 MAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSAL 354 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666777777777777777766 5789999999877666666665555544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00032 Score=62.91 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=67.7
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----H--------------------HHHHHHHHHHh
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----P--------------------LLDFGRFLAGC 104 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----~--------------------~~~~~r~l~G~ 104 (308)
.+.+.+|.++.+.+.+.++..++..++.++.|++.||+|||+.+ . ...++-.+.+.
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG 299 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45566899999999999999999999999999999999999876 0 00011111222
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHH-HHHHHHHHHHHhh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLF-IVTGALFAYVIGA 149 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~ 149 (308)
+.+........++.|..| +.++...++.+.. ..+|..+++.++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222333334455566665 7888888886543 4567777776653
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00045 Score=64.31 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=71.3
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------------HHHHHHHHHHH
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------------PLLDFGRFLAG 103 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------------~~~~~~r~l~G 103 (308)
+..+...-+....+.+.++..++.+++.++.++++||+|+|+.+ +.+++.-++.|
T Consensus 256 y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g 335 (473)
T PRK10429 256 YYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLN 335 (473)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44443333455667777777788999999999999999999987 12223345566
Q ss_pred hhhhccccchhhhhhccCC-------CCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 104 CGIGVMSYVVPVYIAEITP-------KNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
++.+...+...++++|..+ .+..|...+......-+|..+++.+.+.
T Consensus 336 ~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 336 IGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788888998865 3444567777777777777776665544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=6.8e-05 Score=65.72 Aligned_cols=78 Identities=26% Similarity=0.288 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhhhhhcccccchH------------------------HHHHHHHHHHHhhhhccccchhhhhhccCCC
Q 048448 68 LTIGAIIGAITSGRIADWVARKGAA------------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPK 123 (308)
Q Consensus 68 ~~~g~~~g~~~~g~l~d~~Grr~~~------------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~ 123 (308)
..+..+.|.++.+++.||+|||++| .+++.+|+ ...+.+.+.+.|.-|.+|.
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~ara----fisg~fqvaYvYtPEVyPT 465 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARA----FISGAFQVAYVYTPEVYPT 465 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHH----HHhchheEEEEecCcccch
Confidence 4466778999999999999999999 33334444 3445567889999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhh
Q 048448 124 NLRAALATVNQLFIVTGALFAYVIGA 149 (308)
Q Consensus 124 ~~r~~~~~~~~~~~~~g~~~~~~l~~ 149 (308)
..|+...+.-....-+|+++.|+++-
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA~ 491 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIAM 491 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHHH
Confidence 99999999999999999999998873
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00038 Score=62.99 Aligned_cols=102 Identities=19% Similarity=0.034 Sum_probs=81.7
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHHHHhh
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFLAGCG 105 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l~G~~ 105 (308)
.+.+.+|.++.+.++......++.++++++.+++.||+|++... +.+++..++.|++
T Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (394)
T PRK11652 233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG 312 (394)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34445889999999998889999999999999999999844322 2234456677788
Q ss_pred hhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 106 IGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 106 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
.+...+....+..|.+| +++|...++.+....+|..+++.++..+
T Consensus 313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888887 5789999999999999999998887765
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00035 Score=63.53 Aligned_cols=102 Identities=21% Similarity=0.237 Sum_probs=81.8
Q ss_pred cccccC-CChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------------------HHHHHH----HHHHH
Q 048448 50 IMADLK-ESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------PLLDFG----RFLAG 103 (308)
Q Consensus 50 l~~~~~-l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------~~~~~~----r~l~G 103 (308)
..++.| .+....+.+.++..++-++.-+..+++..|+|.|+++ +...+. ..+.|
T Consensus 233 yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG 312 (400)
T PF03825_consen 233 YLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHG 312 (400)
T ss_pred HHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhh
Confidence 345555 6777778777888888889888999999999999988 111122 33589
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHH-HHHHHHHHHHHHhhhh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQL-FIVTGALFAYVIGALM 151 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~~ 151 (308)
+..|........++.+.+|++.|+++.++++. ...+|..++..+++++
T Consensus 313 ~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l 361 (400)
T PF03825_consen 313 LTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL 361 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876 4678888888888776
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00028 Score=65.02 Aligned_cols=101 Identities=7% Similarity=-0.131 Sum_probs=75.7
Q ss_pred ccc-ccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHHHHHHHHHHhhhh
Q 048448 48 FGI-MADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLLDFGRFLAGCGIG 107 (308)
Q Consensus 48 ~~l-~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~~r~l~G~~~g 107 (308)
+++ ++.+|+++.+.++..+.+.++..+|.++.+++.||+|+|+++ ...+..-.+.|++.+
T Consensus 283 ~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~ 362 (438)
T PRK10133 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMS 362 (438)
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 343 456899999999999999999999999999999999999887 111234457899999
Q ss_pred ccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 108 VMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 108 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
..+|...+...+..|++ .+.+.++..... +|..+++.+.+.
T Consensus 363 ~i~P~~~s~a~~~~~~~-~~~as~l~~~~~-~g~~~~~~i~G~ 403 (438)
T PRK10133 363 IQYPTIFSLGIKNLGQD-TKYGSSFIVMTI-IGGGIVTPVMGF 403 (438)
T ss_pred HHHHHHHHHHHcccchh-hccchhHHhHHh-ccchHHHHHHHH
Confidence 99999999999988764 456666665433 344444444333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00035 Score=63.53 Aligned_cols=105 Identities=12% Similarity=0.016 Sum_probs=77.1
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhh-cccccchH--------------------HHHHHHHHHHHhh
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIAD-WVARKGAA--------------------PLLDFGRFLAGCG 105 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d-~~Grr~~~--------------------~~~~~~r~l~G~~ 105 (308)
.|...++.+.++.+.+++.++..++..++..+.++..| |++.++.+ +.+++..++.|++
T Consensus 231 ~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g 310 (400)
T PRK11646 231 LPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIG 310 (400)
T ss_pred hhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444554446778888888877777766666666665 46655433 2333445667777
Q ss_pred hhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 106 IGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 106 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
.+...+...+++.+..|++.||+..++.+....+|..+++.+.+.+
T Consensus 311 ~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 311 SIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL 356 (400)
T ss_pred HHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence 7777788889999999999999999999999999999988877765
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0015 Score=57.39 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 93 PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 93 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
..++++-|+.|.|.+...+..+.++++..+++++++.+++.+.+..+|.+++|.+...
T Consensus 11 ~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~ 68 (310)
T TIGR01272 11 VLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGS 68 (310)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999998774
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00057 Score=62.05 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=74.1
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------------------HHHHHHHHHHHhhhhccc
Q 048448 52 ADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------PLLDFGRFLAGCGIGVMS 110 (308)
Q Consensus 52 ~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------~~~~~~r~l~G~~~g~~~ 110 (308)
.+.+.+....+.+.+...+......++.|++.||+++|+.+ +.+++..++.|++.+...
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777888887777777788889999999999876 234456667777877777
Q ss_pred cchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 111 YVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 111 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+....++.+..|++.|+...+..+ ...+|..++|.+++.+
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l 356 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVI 356 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHH
Confidence 777888999999999999887654 3446777777766655
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0014 Score=60.40 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=76.5
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc---c-ccchH-------------------------HHHH
Q 048448 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV---A-RKGAA-------------------------PLLD 96 (308)
Q Consensus 46 ~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~---G-rr~~~-------------------------~~~~ 96 (308)
..+.+.+++|+++.+...+.++..+...+- ++.|.++|-+ | ||+.+ ....
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~ 90 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV 90 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence 356788999999999999999999988885 6888999987 3 44444 2223
Q ss_pred HHHHHHHhhhhccccchhhhhhccCC--CCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 97 FGRFLAGCGIGVMSYVVPVYIAEITP--KNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 97 ~~r~l~G~~~g~~~~~~~~~~~e~~~--~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+.-++..+|......+.-+...|... ++.||...+.......+|.+++..+++.+
T Consensus 91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l 147 (433)
T PF03092_consen 91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPL 147 (433)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33455566666666777777778763 33377778887778888888887777655
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0009 Score=61.72 Aligned_cols=94 Identities=16% Similarity=0.075 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHHHHhhhhccccchhh
Q 048448 58 YAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFLAGCGIGVMSYVVPV 115 (308)
Q Consensus 58 ~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l~G~~~g~~~~~~~~ 115 (308)
+...+.+.....++.+++.+++++++||+|+|+.+ +.+++..++.|++.+...+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566667788888999999999999999887 23455556788888888889999
Q ss_pred hhhccCC-------CCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 116 YIAEITP-------KNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 116 ~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+++|..+ ++..|...+..+....+|..+++.+++.+
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998875 23345667777777788888877776553
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00018 Score=64.24 Aligned_cols=93 Identities=11% Similarity=-0.055 Sum_probs=66.6
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------H--HH-------------HHHHHHH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------P--LL-------------DFGRFLA 102 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------~--~~-------------~~~r~l~ 102 (308)
..++.+.+|.++.+.+.+.++..++.+++.++.|+++||+|+|+.+ . .+ ++.-++.
T Consensus 249 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (366)
T TIGR00886 249 AMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVAL 328 (366)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 3455667899999999999999999999999999999999998765 0 00 0112223
Q ss_pred HhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHH
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTG 140 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g 140 (308)
++..|...+.....+.+..| +++|...++.+....+|
T Consensus 329 ~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 329 FFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 34445555566667777776 68889988887765554
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00022 Score=48.57 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=45.6
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH
Q 048448 40 KEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA 92 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~ 92 (308)
.|...|..+...++.|+++.++|.+.++..+...++++++|+++||+|+++..
T Consensus 16 ~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~ 68 (77)
T PF12832_consen 16 LGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI 68 (77)
T ss_pred HHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence 34445556666678899999999999999999999999999999999999875
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00061 Score=46.98 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=44.2
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH
Q 048448 44 NPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA 92 (308)
Q Consensus 44 ~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~ 92 (308)
.|..|.++++.+++.++.+++.++.++|+++|++...++.++..+++.+
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~ 60 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLL 60 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 5778999999999999999999999999999999999998886666655
|
Note that many members are hypothetical proteins. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00088 Score=60.27 Aligned_cols=105 Identities=14% Similarity=-0.025 Sum_probs=65.9
Q ss_pred ccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccc---chH---------------------HHHH
Q 048448 41 EQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARK---GAA---------------------PLLD 96 (308)
Q Consensus 41 ~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr---~~~---------------------~~~~ 96 (308)
+......+++ ++.+.+.. .+...++..+...++ .++++||..|| +.. ...+
T Consensus 210 ~~~~wlp~~L-~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 284 (368)
T TIGR00903 210 NLAIWLEAAL-RPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALF 284 (368)
T ss_pred HHHHHHHHHH-HHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence 3333333444 55667654 555555555555554 46777877654 222 1112
Q ss_pred HHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 97 FGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 97 ~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+.-++.|++.....+..+.+.+|.+|++.|++..++.+....+|...++.+...
T Consensus 285 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~ 338 (368)
T TIGR00903 285 AFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAML 338 (368)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHH
Confidence 222334455555556677889999999999999999999888888777666543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0022 Score=57.96 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=67.3
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhc
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGV 108 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~ 108 (308)
.+.+++|.++.+.+...+...++.+++.++.+++.||+|||+.+ ...+..-++.+.+.+.
T Consensus 229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 308 (392)
T PRK10473 229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV 308 (392)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999877 1111112222333322
Q ss_pred cccchhhhhhccCCCCCc-hhHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 048448 109 MSYVVPVYIAEITPKNLR-AALATVNQLFIVTGALFAYVIGALMSWR 154 (308)
Q Consensus 109 ~~~~~~~~~~e~~~~~~r-~~~~~~~~~~~~~g~~~~~~l~~~~~w~ 154 (308)
..+. .+..+..|.++| +.+.++...+..+|..+++.+...+++.
T Consensus 309 ~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~ 353 (392)
T PRK10473 309 GFGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGIS 353 (392)
T ss_pred HhHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2222 233445554444 5556666666667777776666665543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00035 Score=65.39 Aligned_cols=113 Identities=22% Similarity=0.196 Sum_probs=97.6
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHHHHh
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFLAGC 104 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l~G~ 104 (308)
++...++.+++..+.+.+.++..+...+|.++.|+++|+...++.. +.+++.-.+.|+
T Consensus 321 l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~ 400 (509)
T KOG2504|consen 321 LPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGF 400 (509)
T ss_pred HHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5566678899999999999999999999999999999998844333 466677788999
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT 159 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~ 159 (308)
+.|......+..+.|+.+.++-..+.++..++.+++.++++.+++.+ +|...|+.
T Consensus 401 ~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~ 460 (509)
T KOG2504|consen 401 CVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYF 460 (509)
T ss_pred HHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhh
Confidence 99988888888999999999999999999999999999999998876 47666665
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0034 Score=60.53 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=88.2
Q ss_pred ccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccchH---------------------------
Q 048448 41 EQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADW-VARKGAA--------------------------- 92 (308)
Q Consensus 41 ~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~-~Grr~~~--------------------------- 92 (308)
|..+...-++.+.+|.+++....+...+....-+.++++|+++|+ +|+++++
T Consensus 5 Gm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~ 84 (654)
T TIGR00926 5 GMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLH 84 (654)
T ss_pred ecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchH
Confidence 344444556677789999888888888888788888999999996 6999987
Q ss_pred -HHHHHHHHHHHhhhhccccchhhhhhccCCCCC---chhHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHH
Q 048448 93 -PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNL---RAALATVNQLFIVTGALFAYVIGALM-----------SWRILA 157 (308)
Q Consensus 93 -~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~~-----------~w~~~~ 157 (308)
...+++-.+.++|.|+.-+...+...|.++++. |.....++..+.++|.++++.+..++ +|...|
T Consensus 85 ~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF 164 (654)
T TIGR00926 85 DLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAF 164 (654)
T ss_pred HHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHH
Confidence 013445566777889999999999999887643 45566667777888888876665544 377666
Q ss_pred Hh
Q 048448 158 LT 159 (308)
Q Consensus 158 ~~ 159 (308)
.+
T Consensus 165 ~i 166 (654)
T TIGR00926 165 GV 166 (654)
T ss_pred HH
Confidence 55
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0021 Score=59.48 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=78.8
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccccc--------chH----------------------HHH
Q 048448 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARK--------GAA----------------------PLL 95 (308)
Q Consensus 46 ~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr--------~~~----------------------~~~ 95 (308)
...++.+-+|++..+.|++.++.++...+..+++|.++||.-+| +.+ ...
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~ 360 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLL 360 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchH
Confidence 34577778999999999999999999999999999999998665 222 101
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHh
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-------SWRILALT 159 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-------~w~~~~~~ 159 (308)
.+.-+..+++..+..............+++-+..+++.+...++..+++|.+...+ .|+++|++
T Consensus 361 a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i 431 (466)
T KOG2532|consen 361 AVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLI 431 (466)
T ss_pred HHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHH
Confidence 11111222222222222222222221456778999999999999999999887665 79999988
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00047 Score=63.50 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchH
Q 048448 65 GSILTIGAIIGAITSGRIADWVARKGAA 92 (308)
Q Consensus 65 ~s~~~~g~~~g~~~~g~l~d~~Grr~~~ 92 (308)
..+..+...++.+++|+++||+|+++++
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl 319 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVT 319 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHH
Confidence 3445567777889999999999999977
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.012 Score=54.08 Aligned_cols=98 Identities=18% Similarity=0.132 Sum_probs=76.5
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHHHHhhhhccc
Q 048448 53 DLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFLAGCGIGVMS 110 (308)
Q Consensus 53 ~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l~G~~~g~~~ 110 (308)
.++.++....+.......+.+++.++...+++|+|+|+++ ..+++..++.+++.+...
T Consensus 266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~ 345 (467)
T COG2211 266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIAN 345 (467)
T ss_pred EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccc
Confidence 4566667777788888888888899999999999999998 566777788999999999
Q ss_pred cchhhhhhccCC-------CCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 111 YVVPVYIAEITP-------KNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 111 ~~~~~~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+..+++++|..+ .|.-|...+....+.-+|..++..+.++
T Consensus 346 ~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 346 PLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred cccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988775 3444667777777777776666554443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0084 Score=54.13 Aligned_cols=129 Identities=13% Similarity=0.136 Sum_probs=89.4
Q ss_pred cccccccc-cCCChhHHH-HHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHH
Q 048448 46 TQFGIMAD-LKESYAEYS-LFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAG 103 (308)
Q Consensus 46 ~~~~l~~~-~~l~~~~~~-~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G 103 (308)
..|++.+. .|++..++. -+.-+..-.+++.-++...+.|..|.|+++ ..+-+.-++.|
T Consensus 26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg 105 (412)
T PF01770_consen 26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYG 105 (412)
T ss_pred chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 34566665 788888865 455556667777788889999999999998 44555666777
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHh----------hhcccccC
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM------SWRILALT----------GLFFIPES 167 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~------~w~~~~~~----------~~~~~~es 167 (308)
++.+. ..+..+|+.-..|+++-.++.+..-.+.-+|.+++.+++..+ +.+...++ ..+++|..
T Consensus 106 ~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~ 184 (412)
T PF01770_consen 106 LATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP 184 (412)
T ss_pred HHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77654 456677888888887777888777777777777777776654 34444444 45678876
Q ss_pred chhHhhcC
Q 048448 168 PRWLAMIG 175 (308)
Q Consensus 168 p~~~~~~~ 175 (308)
++-..-++
T Consensus 185 ~~S~~f~r 192 (412)
T PF01770_consen 185 KRSLFFHR 192 (412)
T ss_pred Ccccceec
Confidence 65443333
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0047 Score=58.01 Aligned_cols=89 Identities=16% Similarity=0.076 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccc----chH-----------------------------HHHHHHHHHHHhhhh
Q 048448 61 YSLFGSILTIGAIIGAITSGRIADWVARK----GAA-----------------------------PLLDFGRFLAGCGIG 107 (308)
Q Consensus 61 ~~~~~s~~~~g~~~g~~~~g~l~d~~Grr----~~~-----------------------------~~~~~~r~l~G~~~g 107 (308)
.+++.++..+...+++++.+++-+|.++| +.+ ++++...++.|+|++
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 45666677767777766665555555544 222 156777889999999
Q ss_pred ccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048448 108 VMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGA 149 (308)
Q Consensus 108 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 149 (308)
...|....++.+..|++.||+.++++..+..+|..++..+..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888887766653
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0057 Score=53.80 Aligned_cols=113 Identities=19% Similarity=0.104 Sum_probs=84.9
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccchH-------------------HHHHHHHHHHHhhh
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV-ARKGAA-------------------PLLDFGRFLAGCGI 106 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~-Grr~~~-------------------~~~~~~r~l~G~~~ 106 (308)
.|.+..|-|+++.+.|+..+...+..++.++....+.+|. .+|+.. ...+..-++.|+|.
T Consensus 231 LP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~ 310 (395)
T COG2807 231 LPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQ 310 (395)
T ss_pred HHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCcc
Confidence 5778889999999999999999999999999999999975 444444 22222248899999
Q ss_pred hccccchhhhhhccCCC-CCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh
Q 048448 107 GVMSYVVPVYIAEITPK-NLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT 159 (308)
Q Consensus 107 g~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~ 159 (308)
|..++...+.+..-.+. ++-+...++.|....+=...+|.+.+.+ +|+.....
T Consensus 311 G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~ 369 (395)
T COG2807 311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVL 369 (395)
T ss_pred chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHH
Confidence 99999999999877654 4445556666655555555677777766 78766554
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.015 Score=54.83 Aligned_cols=93 Identities=16% Similarity=0.054 Sum_probs=58.6
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----HHHHHHHHHHH-------------------
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----PLLDFGRFLAG------------------- 103 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----~~~~~~r~l~G------------------- 103 (308)
.+.+.+..+.+... .+...+..+...++.+++.++.||+|||+.+ ..+.++.++.|
T Consensus 318 ~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
T KOG0254|consen 318 STTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWL 396 (513)
T ss_pred hHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHH
Confidence 34556666665443 5555566667777777889999999999998 11111111111
Q ss_pred ----------hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHH
Q 048448 104 ----------CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTG 140 (308)
Q Consensus 104 ----------~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g 140 (308)
....+..++.+.+.+|.+|.+.|+...++......+.
T Consensus 397 ~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~ 443 (513)
T KOG0254|consen 397 AIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLW 443 (513)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHH
Confidence 1112234555668899999999999988865544333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0051 Score=57.54 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccch-------H------------------------------HHHHHHHHHHHh
Q 048448 62 SLFGSILTIGAIIGAITSGRIADWVARKGA-------A------------------------------PLLDFGRFLAGC 104 (308)
Q Consensus 62 ~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~-------~------------------------------~~~~~~r~l~G~ 104 (308)
+++.+...+..++.+++.+++.||+|+|+. + +.++..-++.|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 456666667787888889999999998862 1 334445567889
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
|.+...+....++.+..|++.+|.+++++.....+|..++..++..
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~ 437 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATF 437 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888877643
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.029 Score=51.95 Aligned_cols=226 Identities=8% Similarity=-0.039 Sum_probs=122.7
Q ss_pred cccccccccCC-----ChhHHHHHHHHHHHHHHHH-HHHHhhhhhcccccchHH--------HHH---------------
Q 048448 46 TQFGIMADLKE-----SYAEYSLFGSILTIGAIIG-AITSGRIADWVARKGAAP--------LLD--------------- 96 (308)
Q Consensus 46 ~~~~l~~~~~l-----~~~~~~~~~s~~~~g~~~g-~~~~g~l~d~~Grr~~~~--------~~~--------------- 96 (308)
....+.+.+.+ ....+.++.+...+...+. .++.+++++|++|++.+. .+.
T Consensus 25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p 104 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP 104 (472)
T ss_pred HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence 34456666655 3356788888777766666 788999999999999880 000
Q ss_pred ----------------------------HHHHHHHhhhhcccc-chhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 048448 97 ----------------------------FGRFLAGCGIGVMSY-VVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVI 147 (308)
Q Consensus 97 ----------------------------~~r~l~G~~~g~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l 147 (308)
+.-+...+-.....+ +.+.+++|.++.++-.+..++...+.++|.++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111112222 667888999999998999999999999999999877
Q ss_pred hhhh------------hhH----HHHHh-hh--cccccCchhHhhcCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Q 048448 148 GALM------------SWR----ILALT-GL--FFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEILSKRITL 208 (308)
Q Consensus 148 ~~~~------------~w~----~~~~~-~~--~~~~esp~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (308)
..++ .|. ..+.+ .. ...--.-+|+. +... .++.....+ .
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~-~~~~-----------~~~~~~~~~---~------- 242 (472)
T TIGR00769 185 IKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVN-RNVL-----------TDPRSYNPA---L------- 242 (472)
T ss_pred HHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc-----------CCccccchh---h-------
Confidence 6654 231 11111 00 00000011111 0000 000000000 0
Q ss_pred HHHHHHHHHhcCCccchhhccccchhhHHHHHHHhhhcccccc---ccceecccCCC-CchhhHhHHHHHHHHHHHHHHH
Q 048448 209 ILQESLALINQLPRVNILDLFNRRNIRFVNVYIAFYSIGMGPI---PWVIMFEIFPL-NIKGPGGSLVTLVNWIGSWAIS 284 (308)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~e~~p~-~~r~~~~g~~~~~~~~~~~i~~ 284 (308)
++..++.+-.-...++.++++++++.+++++.+|+....-+ --..+.|.+|. +.|+.-+|-....-.+.+++..
T Consensus 243 --~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~ 320 (472)
T TIGR00769 243 --KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMM 320 (472)
T ss_pred --ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000111234667789999999888888877644322 22356777766 3455556666666555565555
Q ss_pred HHHHHHHHhhc
Q 048448 285 YSFILLMTWSS 295 (308)
Q Consensus 285 ~~~~~~~~~~~ 295 (308)
++.+.+.+..+
T Consensus 321 l~~~~l~~~~G 331 (472)
T TIGR00769 321 LLSGNVIRKYG 331 (472)
T ss_pred HHHHHHHHHhh
Confidence 55566655443
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.01 Score=55.07 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------HHHHHHHHHHHhhhhccccchhh
Q 048448 58 YAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------PLLDFGRFLAGCGIGVMSYVVPV 115 (308)
Q Consensus 58 ~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------~~~~~~r~l~G~~~g~~~~~~~~ 115 (308)
+...+.+..++.++.+++.+++++++||+|+|+++ ..+++.-++.|++.+...+....
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677788889999999999999999999875 11222334456666555555566
Q ss_pred hhhccCC-------CCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 116 YIAEITP-------KNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 116 ~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+++|..+ ++..|...+......-+|..+++.+.+.
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665 2333454555555666666665555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.022 Score=51.12 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=85.9
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhh-cccccchH-----------------------HHHHHHHHHHHh
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIAD-WVARKGAA-----------------------PLLDFGRFLAGC 104 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d-~~Grr~~~-----------------------~~~~~~r~l~G~ 104 (308)
+=.+-+|++..+...++.....|.++|-...|++.. +.+++++- +.+..+-++.|+
T Consensus 234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~ 313 (403)
T PF03209_consen 234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGL 313 (403)
T ss_pred chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 334557899999999999999999999888888777 55665544 677778899999
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+.|.......+.+.+...+++.|..++.|.....++..++..+++.+
T Consensus 314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888777777766653
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.00014 Score=67.14 Aligned_cols=101 Identities=16% Similarity=0.053 Sum_probs=62.7
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------HHH------------------HH
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------PLL------------------DF 97 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------~~~------------------~~ 97 (308)
.+.+.+..+.+.. -.......+...++.+.+.++.||+|||+++ ..+ ++
T Consensus 276 ~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 353 (451)
T PF00083_consen 276 SPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIV 353 (451)
T ss_pred ccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence 4556666666655 2223334455666777778999999999877 000 00
Q ss_pred HHHHHHhhhh-ccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048448 98 GRFLAGCGIG-VMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGA 149 (308)
Q Consensus 98 ~r~l~G~~~g-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 149 (308)
.-.+..++.+ +..+....+..|.+|.+.|++..++......++.++++.+..
T Consensus 354 ~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~ 406 (451)
T PF00083_consen 354 FLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFP 406 (451)
T ss_pred eeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0001111111 233555678899999999999999988777777766655543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.013 Score=53.53 Aligned_cols=94 Identities=7% Similarity=-0.044 Sum_probs=66.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHHHHHHHHHHhhhhccccchhh
Q 048448 55 KESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLLDFGRFLAGCGIGVMSYVVPV 115 (308)
Q Consensus 55 ~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~~r~l~G~~~g~~~~~~~~ 115 (308)
+.+....+...+.+..+..+|.++++++.||+++|+++ ...+..-++.|++.+..+|...+
T Consensus 265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~s 344 (410)
T TIGR00885 265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYG 344 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667777788899999999999999999877 12334556788888888899999
Q ss_pred hhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 116 YIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 116 ~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+..+..+++.+.....+ .++. +|..+.|.+.+.
T Consensus 345 l~~~~~g~~~~~~s~~l-~~~~-~Gga~~p~l~G~ 377 (410)
T TIGR00885 345 IALKGLGQDTKYGAAGL-VMAI-IGGGIVPPLQGF 377 (410)
T ss_pred HHHhhhhhhhhhhHHHH-HHHH-hccchHHHHHHH
Confidence 99999987665333333 2222 666666665544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0015 Score=58.09 Aligned_cols=127 Identities=16% Similarity=0.082 Sum_probs=89.7
Q ss_pred ccccCCccccccccccccc-cccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------
Q 048448 33 IDRKNQAKEQQNPTQFGIM-ADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------- 92 (308)
Q Consensus 33 ~~~~~~~~~~~~~~~~~l~-~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------- 92 (308)
+...+...++.-|..+.+. +....+..+.|+..--..+.+.+|+.+.|.++||++.-+.+
T Consensus 279 i~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~ 358 (464)
T KOG3764|consen 279 ITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA 358 (464)
T ss_pred hhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh
Confidence 3366777777777766644 44565555888888888999999999999999999944444
Q ss_pred ---HHHHHHHHHHHhhhhccccchhhhhhccCCC---C---CchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 93 ---PLLDFGRFLAGCGIGVMSYVVPVYIAEITPK---N---LRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 93 ---~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~---~---~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
..+++-++..|++.+...+...-...++... + .-|...++...++++|..++|.+++.+ +++|...+
T Consensus 359 ~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~i 438 (464)
T KOG3764|consen 359 TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTI 438 (464)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHH
Confidence 4555666666666665544443333333332 3 457888888999999999999998876 66666544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.02 Score=53.38 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccc-----chH-------------------------------HHHHHHHHHHHh
Q 048448 61 YSLFGSILTIGAIIGAITSGRIADWVARK-----GAA-------------------------------PLLDFGRFLAGC 104 (308)
Q Consensus 61 ~~~~~s~~~~g~~~g~~~~g~l~d~~Grr-----~~~-------------------------------~~~~~~r~l~G~ 104 (308)
.+++.++..+..++.+++..++..+.+|| ... +++++..++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 56777777777777776655433333332 111 445667788999
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
|.....+....++++..|++.||++++++.....+|..+++.+....
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988876654
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.013 Score=53.02 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=85.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhccccchh
Q 048448 55 KESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSYVVP 114 (308)
Q Consensus 55 ~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~~~~ 114 (308)
+.+....|...++..+.-++.-.+.+++.+|+|.|+.+ +.+.+.+.+.|+..+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556688999999999999999999999999999988 7788889999999999999999
Q ss_pred hhhhccCCCCCchhHHHH-HHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 115 VYIAEITPKNLRAALATV-NQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 115 ~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.|+++.+|++..++...+ .+.+..+|..+.+.+++.+ |.+..+++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyli 384 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLI 384 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHH
Confidence 999999999988777766 4677778877777766665 66665555
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0041 Score=55.42 Aligned_cols=115 Identities=8% Similarity=0.017 Sum_probs=84.9
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHH
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLL 95 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~ 95 (308)
.-|.....-+.+..++.+..|++..+.+...+.+..+..+|.+++.++..|+-..+.+ ..-
T Consensus 248 YVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~ 327 (422)
T COG0738 248 YVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVA 327 (422)
T ss_pred HHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 4556666656666667777899999999999999999999999999999999888877 233
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+.+-++.|+..+..+|...+...+..| ++-. ..+..-+...+|+.+.|.+.+++
T Consensus 328 ~~~l~~ig~F~simfPTIfslal~~l~-~~ts-~~s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 328 LYALFLIGLFNSIMFPTIFSLALKNLG-EHTS-VGSGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccC-cccc-ccceeeeeheecchHHHHHHHHH
Confidence 344567888999999999999999998 3333 33333334445555656655554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.11 Score=47.50 Aligned_cols=102 Identities=10% Similarity=0.057 Sum_probs=63.1
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhh-cccccchH------------------------HHHHHHHHHHH
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIAD-WVARKGAA------------------------PLLDFGRFLAG 103 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d-~~Grr~~~------------------------~~~~~~r~l~G 103 (308)
.+++.+|.++.+.++.......+..++..+.+.+.+ +.++|... ...++..++.|
T Consensus 244 ~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~ 323 (413)
T PRK15403 244 ILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYA 323 (413)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 455567999999999988888888888888877654 44444321 11234455566
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+|.+...+....... ......+|+..++.+.....+...++.+..++
T Consensus 324 ~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~ 370 (413)
T PRK15403 324 FGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWL 370 (413)
T ss_pred HHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 676666666654332 12223468888877766655555555555443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.0099 Score=54.93 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=79.1
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhcccc
Q 048448 52 ADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSY 111 (308)
Q Consensus 52 ~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~ 111 (308)
++++..+..-|.....-..|-++.-++.+++..++|+-+++ |+.+-.-+++|+..+..+.
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWa 478 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWA 478 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHH
Confidence 45555566667777777888888889999999999999888 6667777899999999999
Q ss_pred chhhhhhccCCCCCchhHHHHHHHH-----HHHHHHHHHHHhhhh
Q 048448 112 VVPVYIAEITPKNLRAALATVNQLF-----IVTGALFAYVIGALM 151 (308)
Q Consensus 112 ~~~~~~~e~~~~~~r~~~~~~~~~~-----~~~g~~~~~~l~~~~ 151 (308)
+..+|++...|++.|..+.++++.. ..+|.++|..+-..+
T Consensus 479 a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f 523 (618)
T KOG3762|consen 479 AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF 523 (618)
T ss_pred HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence 9999999999999999999987653 344555554443333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.52 Score=42.19 Aligned_cols=42 Identities=14% Similarity=0.009 Sum_probs=37.3
Q ss_pred ceecccCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048448 254 VIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTWSS 295 (308)
Q Consensus 254 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~ 295 (308)
+..+.+.|+.+.++-+.+.|+..++|+---..+...|.|.+.
T Consensus 392 af~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 392 AFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 357888999999999999999999999888888888888876
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.008 Score=54.51 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhhhhcccccchH----HHHHHHHHHHHhhhh---------------------ccccchhhhhhccCCCC
Q 048448 70 IGAIIGAITSGRIADWVARKGAA----PLLDFGRFLAGCGIG---------------------VMSYVVPVYIAEITPKN 124 (308)
Q Consensus 70 ~g~~~g~~~~g~l~d~~Grr~~~----~~~~~~r~l~G~~~g---------------------~~~~~~~~~~~e~~~~~ 124 (308)
.+++.|..+...+.|++|||++. ..+.+.-+++|+... +.......+-+|.+|.+
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar 438 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR 438 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence 34444666778899999999987 111222222222111 12233445568999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhh---------hhHHHHHh----------hhcccccCch
Q 048448 125 LRAALATVNQLFIVTGALFAYVIGALM---------SWRILALT----------GLFFIPESPR 169 (308)
Q Consensus 125 ~r~~~~~~~~~~~~~g~~~~~~l~~~~---------~w~~~~~~----------~~~~~~esp~ 169 (308)
.|+..-++.....-+|++++...-..+ +.+..+++ .-+++|||.+
T Consensus 439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 999999999999888888876654332 44555554 3467788853
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.077 Score=48.80 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHHHHHHHHHHhhhhccccchhhhhhccCCCC
Q 048448 64 FGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKN 124 (308)
Q Consensus 64 ~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~ 124 (308)
..++.+....+++++.+.+.|+.|+|..+ +.++++-.+.|+|.+..+..-..|++|..+++
T Consensus 55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 37778888899999999999999999998 77888899999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 048448 125 LRAALATVNQLFIVTGALFAYVI 147 (308)
Q Consensus 125 ~r~~~~~~~~~~~~~g~~~~~~l 147 (308)
.+.+..++.-.....+.++|..+
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHh
Confidence 99888888766666666665443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.15 Score=43.44 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=56.4
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHHHHHHHHHHhhhhc
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLLDFGRFLAGCGIGV 108 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~~r~l~G~~~g~ 108 (308)
=++-++++....++|.+..+.+-...+...+.|-++|+-|||+.. -+++++|.+-|++...
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsL 140 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSL 140 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHH
Confidence 356677788777777766666666666667788899999999876 5678899999999988
Q ss_pred cccchhhhh-hccC
Q 048448 109 MSYVVPVYI-AEIT 121 (308)
Q Consensus 109 ~~~~~~~~~-~e~~ 121 (308)
.+....+|. +|..
T Consensus 141 LFSaFEsWliaEHn 154 (454)
T KOG4332|consen 141 LFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHhh
Confidence 887777654 4544
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.06 Score=47.93 Aligned_cols=101 Identities=10% Similarity=0.055 Sum_probs=83.3
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccchH--------------------HHHHHHHHHHHhhhhc
Q 048448 51 MADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVA--RKGAA--------------------PLLDFGRFLAGCGIGV 108 (308)
Q Consensus 51 ~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~G--rr~~~--------------------~~~~~~r~l~G~~~g~ 108 (308)
...++.++.+.|-+.+...+++++.++...+..++.. .+..+ .++.++-.+-.+..+.
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~ 368 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS 368 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 3568899999999988888888888888888888865 33333 4556666777777777
Q ss_pred cccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 109 MSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 109 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
..+....++....|.+.||..+++.....+++-.+||++++.+
T Consensus 369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 8888899999999999999999999999999999999998654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.17 Score=47.28 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccc--c-chH---------------------------------HHHHHHHHHHHh
Q 048448 61 YSLFGSILTIGAIIGAITSGRIADWVAR--K-GAA---------------------------------PLLDFGRFLAGC 104 (308)
Q Consensus 61 ~~~~~s~~~~g~~~g~~~~g~l~d~~Gr--r-~~~---------------------------------~~~~~~r~l~G~ 104 (308)
.++..++..+..++.+++.+++-.|.+| | +.. +++++.-++.++
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~ 389 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF 389 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 5677788888888888888888777633 2 111 556777788899
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHH-HHHHHHHHHHHhh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLF-IVTGALFAYVIGA 149 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~ 149 (308)
|+-...|+..+.+++..|++.||++++.+... ..+|..++..++.
T Consensus 390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~ 435 (493)
T PRK15462 390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD 435 (493)
T ss_pred HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998664 3677776665544
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.0071 Score=54.75 Aligned_cols=108 Identities=13% Similarity=0.188 Sum_probs=79.5
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc----ccccchH------------------------------
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADW----VARKGAA------------------------------ 92 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~----~Grr~~~------------------------------ 92 (308)
.++...++|++....+.+.-+..+...+.+++.|..+|| +||||-+
T Consensus 55 ~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~ 134 (498)
T KOG0637|consen 55 LTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNER 134 (498)
T ss_pred ccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc
Confidence 344667788888888888888888888889999999996 6998877
Q ss_pred --------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchh-HHHHHHHHHHHHHHHHHHHhhhhhhH
Q 048448 93 --------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAA-LATVNQLFIVTGALFAYVIGALMSWR 154 (308)
Q Consensus 93 --------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~-~~~~~~~~~~~g~~~~~~l~~~~~w~ 154 (308)
..++++-.+.=++.-......=++.++.+.+..+.+ +++.+..+..+|..+++.++.+.+|+
T Consensus 135 ~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~ 205 (498)
T KOG0637|consen 135 KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLY 205 (498)
T ss_pred cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCce
Confidence 223333333334444455566677888877666666 99999999999999999988776654
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.7 Score=40.43 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=38.6
Q ss_pred ccCCccccccccccccccc--cCCChhHHHHHHHH---HHHHHHHHHHHHhhhhhcccccchH
Q 048448 35 RKNQAKEQQNPTQFGIMAD--LKESYAEYSLFGSI---LTIGAIIGAITSGRIADWVARKGAA 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~--~~l~~~~~~~~~s~---~~~g~~~g~~~~g~l~d~~Grr~~~ 92 (308)
.-|+..|......|.+.++ -+.+-++.+...-+ |.+=.+-.+++-.....|+||||.-
T Consensus 11 lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSW 73 (544)
T PF13000_consen 11 LQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSW 73 (544)
T ss_pred HcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchh
Confidence 4577777776667777777 57777777654333 3344444556667777789999976
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.54 Score=44.33 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhhhhcccccchH---------------------H--HHHHHHHHHHhhhhccccchhhhhhccCCCCCch
Q 048448 71 GAIIGAITSGRIADWVARKGAA---------------------P--LLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRA 127 (308)
Q Consensus 71 g~~~g~~~~g~l~d~~Grr~~~---------------------~--~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~ 127 (308)
-...+....+.+.|++|||... . ...+...+..++.+..+.....+.+|..|...|.
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN 441 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 4445555667889999999887 2 2444455555666667777799999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 048448 128 ALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 128 ~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
.+.+.......+|.++++.+...
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~~~ 464 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFPLL 464 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887643
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.56 Score=42.52 Aligned_cols=92 Identities=16% Similarity=0.080 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHHHHhhhhccccchh
Q 048448 58 YAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFLAGCGIGVMSYVVP 114 (308)
Q Consensus 58 ~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l~G~~~g~~~~~~~ 114 (308)
.++..+...+|.+|-+++.--...+ |+-+-+.+ +.+++.-+..|+..|..++...
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF 357 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF 357 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4566778888888877774333222 33222222 5666678889999999999999
Q ss_pred hhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 115 VYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 115 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
..+.|-.++++|-..++....+.++|..++.+++..+
T Consensus 358 ~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 358 YRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888765
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.33 Score=46.31 Aligned_cols=131 Identities=15% Similarity=0.046 Sum_probs=92.6
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccchH--------------------------
Q 048448 40 KEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV-ARKGAA-------------------------- 92 (308)
Q Consensus 40 ~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~-Grr~~~-------------------------- 92 (308)
.|+....+.++..+++.+...+....+.+.-.....++.+++++|-+ ||-+++
T Consensus 54 ~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~ 133 (571)
T KOG1237|consen 54 FGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF 133 (571)
T ss_pred hcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 45556667788888998887777788888777778888999999965 777766
Q ss_pred -------------------HHHHHHHHHHHhhhhccccchhhhhhccCC---CC---CchhHHHHHHHHHHHHHHHHHHH
Q 048448 93 -------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITP---KN---LRAALATVNQLFIVTGALFAYVI 147 (308)
Q Consensus 93 -------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~---~~---~r~~~~~~~~~~~~~g~~~~~~l 147 (308)
..+..+.-+..+|.|+.-+....+-+|-++ ++ .+.....++....++|.+++..+
T Consensus 134 ~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~ 213 (571)
T KOG1237|consen 134 MCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV 213 (571)
T ss_pred cccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH
Confidence 244445556677888888899999999888 22 22356777778888888887666
Q ss_pred hhhh----hhHHHHHh--------hhcccccCchh
Q 048448 148 GALM----SWRILALT--------GLFFIPESPRW 170 (308)
Q Consensus 148 ~~~~----~w~~~~~~--------~~~~~~esp~~ 170 (308)
-.+. +|.+.|-+ +++|++-++.+
T Consensus 214 ~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y 248 (571)
T KOG1237|consen 214 LVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFY 248 (571)
T ss_pred HHhhhhcccceeeccHHHHHHHHHHHHHHcCceeE
Confidence 5554 67655544 44555555433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=91.67 E-value=1 Score=41.34 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=75.9
Q ss_pred ccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----H--------------------
Q 048448 39 AKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----P-------------------- 93 (308)
Q Consensus 39 ~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----~-------------------- 93 (308)
.+++...+..++... |+++..+|..-++-.+..+.|.+.+.++.+|+|..+.= +
T Consensus 274 VLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~ 352 (432)
T PF06963_consen 274 VLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFS 352 (432)
T ss_pred HhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 455544455566555 99999999999999999999999999999999976654 0
Q ss_pred HHHHHHHHHH-----hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 94 LLDFGRFLAG-----CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 94 ~~~~~r~l~G-----~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
..-+.-++.| +|.=+...+..-++.|..|+++||...+.-+...++--++...++..
T Consensus 353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTII 414 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0001111111 11111223334555788999999999999888888877777666543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.55 Score=44.91 Aligned_cols=91 Identities=20% Similarity=0.137 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHHHHhhhhccccchhhh
Q 048448 60 EYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFLAGCGIGVMSYVVPVY 116 (308)
Q Consensus 60 ~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l~G~~~g~~~~~~~~~ 116 (308)
..++....+.++..+|+++.|.+..+++|-|.. ...+..-++.|++.|+........
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~ 429 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI 429 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence 567888889999999999999999888876554 233455667888888877777777
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 117 IAEITPKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 117 ~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+.-..|++.-|.+.++....-.+|..++..+...
T Consensus 430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777899999999999999888888887665443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.46 E-value=6.3 Score=36.98 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=33.0
Q ss_pred chhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 112 VVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 112 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
..+.++.|.++.++-.+..+++..+.++|.++++.+...+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588889999988888999999999999988877665554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.82 Score=41.29 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=70.5
Q ss_pred ChhHHHHHHHH-HHHHHHHHHHHHhhhhhcccccchH----------------------------HHHHHHHHHHHhhhh
Q 048448 57 SYAEYSLFGSI-LTIGAIIGAITSGRIADWVARKGAA----------------------------PLLDFGRFLAGCGIG 107 (308)
Q Consensus 57 ~~~~~~~~~s~-~~~g~~~g~~~~g~l~d~~Grr~~~----------------------------~~~~~~r~l~G~~~g 107 (308)
++...-....+ +.++-.+|.+...++.+. +||... ++++..-.+.|+..|
T Consensus 280 ~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnG 358 (406)
T KOG1479|consen 280 GDWYALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNG 358 (406)
T ss_pred chhhHHHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccc
Confidence 34445556666 899999998888887665 444433 445667788999999
Q ss_pred ccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048448 108 VMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGA 149 (308)
Q Consensus 108 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 149 (308)
-...+...+..+..|++++-.+..+...+...|...|..++.
T Consensus 359 Yltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 359 YLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred hHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 888899999989999999888888888888888888877654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.088 Score=49.18 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=36.4
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc----ccccchH
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADW----VARKGAA 92 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~----~Grr~~~ 92 (308)
.+.+..+.+..+.+.+...+.++.+++.+++|+++|| ..+|...
T Consensus 299 ~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~ 346 (495)
T KOG2533|consen 299 YLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLF 346 (495)
T ss_pred HHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4444467899999999999999999999999999999 5555544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.7 Score=38.99 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhhhccccchhhhhhccCCCCC---chhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 93 PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNL---RAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 93 ~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
..++++-++.++|.|+.-+....+.+|.++++. |.....++..+.++|.+++..+..++ +|.+.|.+
T Consensus 34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i 107 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGI 107 (372)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhH
Confidence 678888889999999999999999999998763 44556677889999999998877776 68887776
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.29 Score=45.67 Aligned_cols=58 Identities=14% Similarity=-0.005 Sum_probs=50.9
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~ 92 (308)
......|-..|.++.+.+.+|+++.+.|.+...-.+-.+++.+++|+++||+-+|+-+
T Consensus 22 ~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~l 79 (618)
T KOG3762|consen 22 FFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPL 79 (618)
T ss_pred eeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCch
Confidence 4455567777888888899999999999999999999999999999999999877766
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=90.03 E-value=1.9 Score=40.26 Aligned_cols=88 Identities=9% Similarity=-0.094 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccc-cchH-----------HHH------------------------------HHHHH
Q 048448 63 LFGSILTIGAIIGAITSGRIADWVAR-KGAA-----------PLL------------------------------DFGRF 100 (308)
Q Consensus 63 ~~~s~~~~g~~~g~~~~g~l~d~~Gr-r~~~-----------~~~------------------------------~~~r~ 100 (308)
+....+.+...+.+++..++.+++|+ |++. ... ++.-.
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 34444555556777788899999995 5553 111 11123
Q ss_pred HHHhhhhccccchhhhhhccCCC--CCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 101 LAGCGIGVMSYVVPVYIAEITPK--NLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 101 l~G~~~g~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
+.|+..+..+.+-++++++..++ +..|..+++++.+..+.+++..+..+.
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 47778888888889999999985 455999999999999999888765544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.29 Score=36.25 Aligned_cols=45 Identities=13% Similarity=0.032 Sum_probs=40.4
Q ss_pred cccccceecccCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 048448 249 GPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTW 293 (308)
Q Consensus 249 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~~~~~~~~~ 293 (308)
.+....+..|.+|++.|+++.++.+....++..+++.+.+.+.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 113 (141)
T TIGR00880 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF 113 (141)
T ss_pred HHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc
Confidence 456677899999999999999999999999999999999988764
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=89.61 E-value=12 Score=34.44 Aligned_cols=68 Identities=9% Similarity=-0.023 Sum_probs=40.5
Q ss_pred cchhhccccchhhHH----HHHHHhhhccccccccceecccCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048448 223 VNILDLFNRRNIRFV----NVYIAFYSIGMGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAISYSFILLMTWSS 295 (308)
Q Consensus 223 ~~~~~l~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~ 295 (308)
..++..++.+-+..- +++....+++...+.|.... ..-+...|+....+-+.++.+.+++|.+.+..+
T Consensus 250 ~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~~~-----G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG 321 (432)
T PF06963_consen 250 RGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLKSQ-----GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG 321 (432)
T ss_pred ccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555544 33333333322223343222 444556788888889999999999999988765
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.59 E-value=2 Score=39.92 Aligned_cols=102 Identities=9% Similarity=0.036 Sum_probs=79.2
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHh-hhhhcccccchH--------------------HHHHHHHHHHHhhhh
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSG-RIADWVARKGAA--------------------PLLDFGRFLAGCGIG 107 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g-~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g 107 (308)
++...++.++.+.+...+.......+++++.. .+...+|-|++. |+++...++.++. +
T Consensus 267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~ 345 (463)
T KOG2816|consen 267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-G 345 (463)
T ss_pred EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-c
Confidence 56677899999999888888888888888776 677778888855 4444444444443 4
Q ss_pred ccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 108 VMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 108 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
...+..-+.++-+.+++++|+..++......+..++++.+-..+
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 56777888889999999999999999999888888877765543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.23 E-value=0.68 Score=44.35 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=69.1
Q ss_pred ccccccc-CC-ChhHHHH-HHHHHHHHHHHHHHHHhhhhhcccccc----hH------------------------HHHH
Q 048448 48 FGIMADL-KE-SYAEYSL-FGSILTIGAIIGAITSGRIADWVARKG----AA------------------------PLLD 96 (308)
Q Consensus 48 ~~l~~~~-~l-~~~~~~~-~~s~~~~g~~~g~~~~g~l~d~~Grr~----~~------------------------~~~~ 96 (308)
.+|.+.+ |. .+++... ..+++.++..+|-+..|.+....-+|+ +- ..++
T Consensus 377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p~~~L~ 456 (591)
T PTZ00207 377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLPKAALP 456 (591)
T ss_pred HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCCccHhH
Confidence 3555666 55 2232222 678888888888888887762222222 11 3677
Q ss_pred HHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHH
Q 048448 97 FGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFA 144 (308)
Q Consensus 97 ~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~ 144 (308)
+.-++.|++.|..+++....++|+|. ++-|+-..+...+..+|.++-
T Consensus 457 ~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~ 503 (591)
T PTZ00207 457 LPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFL 503 (591)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHH
Confidence 78889999999999999999999999 777888888888888887764
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.3 Score=41.06 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccc---hH----------------------------------HHHHHHHHHHH
Q 048448 61 YSLFGSILTIGAIIGAITSGRIADWVARKG---AA----------------------------------PLLDFGRFLAG 103 (308)
Q Consensus 61 ~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~---~~----------------------------------~~~~~~r~l~G 103 (308)
.++..+...+..++.+++..++..+.++++ .+ ++++..-++++
T Consensus 326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s 405 (498)
T COG3104 326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS 405 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 467788888888888888888888865552 22 67777888999
Q ss_pred hhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 048448 104 CGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGA 149 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 149 (308)
+|+=...++...+++...|++-.+..++.+-.....|..++..++.
T Consensus 406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 9999999999999999999999999999999999888888877666
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.94 E-value=3.4 Score=39.12 Aligned_cols=98 Identities=18% Similarity=0.047 Sum_probs=56.8
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH---------------------------HHHHHHHHHHHh
Q 048448 52 ADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------------PLLDFGRFLAGC 104 (308)
Q Consensus 52 ~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------------~~~~~~r~l~G~ 104 (308)
--+|-+....+.+.+++.+|..+|+.+++++.++.-++... ..++..-++.|+
T Consensus 43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 122 (521)
T PRK03612 43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL 122 (521)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999999999998876443333221 011222334566
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGAL 150 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 150 (308)
..|...|....+..+... +.-+...+-......+|.++|.++...
T Consensus 123 l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~ 167 (521)
T PRK03612 123 LIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPF 167 (521)
T ss_pred HHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHH
Confidence 666666666665544322 112334444555555555555544433
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.69 E-value=14 Score=34.34 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=30.2
Q ss_pred chhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 112 VVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 112 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
..+....|.+..++-.+..++++.+.+++.++++.+..++
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777778888888888888888877776665
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=85.63 E-value=2.4 Score=39.09 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=70.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHH------------------------------HHHHHh
Q 048448 55 KESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAAPLLDFG------------------------------RFLAGC 104 (308)
Q Consensus 55 ~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~~~~~~~------------------------------r~l~G~ 104 (308)
|+++...+.+..+..++.++|..+...+..+..-|+++....+. -++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 38888889988888888899988887776677777776111111 122333
Q ss_pred hhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 105 GIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 105 ~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
..+..+.....+++|.+|+..-|...+++....++|..++..++..+
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l 377 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFL 377 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445567789999999999999999888888888887777665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.75 E-value=2.4 Score=30.32 Aligned_cols=45 Identities=24% Similarity=0.212 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcc-cccchHHHHHHHHHHHHhhhhccccc
Q 048448 65 GSILTIGAIIGAITSGRIADWV-ARKGAAPLLDFGRFLAGCGIGVMSYV 112 (308)
Q Consensus 65 ~s~~~~g~~~g~~~~g~l~d~~-Grr~~~~~~~~~r~l~G~~~g~~~~~ 112 (308)
.+.-+++.++-....||+.||| |.+ ++.++.-.++|++.|.....
T Consensus 48 lssefIsGilVGa~iG~llD~~agTs---PwglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLDKFAGTS---PWGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHHHHH
Confidence 3444444444456778999997 666 44666677788887765433
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.56 E-value=0.75 Score=40.28 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhhhhcccccchH-------------------HHHHHHHHHHHhhhhccccchhhhhhccCC
Q 048448 68 LTIGAIIGAITSGRIADWVARKGAA-------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITP 122 (308)
Q Consensus 68 ~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~ 122 (308)
.++.-+..+++.+.+.+++|-|.++ ..++-.-.+.|++.+..+..-.+|+++...
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 3445555666666889999999988 556667788999999999888888877653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 308 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-10 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 308 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 8e-06
Identities = 29/211 (13%), Positives = 59/211 (27%), Gaps = 66/211 (31%)
Query: 100 FLAGCGI-------GVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALMS 152
F C I V ++ I+ + L +L +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-----SLLLKYLD--CR 314
Query: 153 WRIL---ALTGLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEILSKRITLI 209
+ L LT +PR L++I + +R + + ++T I
Sbjct: 315 PQDLPREVLTT------NPRRLSIIAE---------SIR-DGLATWDNWKHVNCDKLTTI 358
Query: 210 LQESLALINQLPRVNILDLFNRRNIRFVNVYIAFYSIGMGPIPWVIMFEIFPLNIKGPGG 269
++ SL N L +F+ +FP + P
Sbjct: 359 IESSL---NVLEPAEYRKMFD-------------------------RLSVFPPSAHIPTI 390
Query: 270 SLVTLVNWIGSWAISYSFILLMTWSSCGRTL 300
L + W + + S ++++ +L
Sbjct: 391 LLSLI--W---FDVIKSDVMVVVNKLHKYSL 416
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 308 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.79 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.78 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.7 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.66 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.46 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.21 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.64 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.62 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.41 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.36 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.24 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.14 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 95.89 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=258.32 Aligned_cols=274 Identities=25% Similarity=0.458 Sum_probs=196.6
Q ss_pred ccCCccccccccccccccccC--------CChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLK--------ESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~--------l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------- 92 (308)
.+|++.+..+...+.+.++++ .++.+.+++.+++.+|.++|++++|+++||+|||+++
T Consensus 23 ~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~ 102 (491)
T 4gc0_A 23 LFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGS 102 (491)
T ss_dssp HHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 455666677777777766653 2345678999999999999999999999999999987
Q ss_pred ------------------------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 048448 93 ------------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIG 148 (308)
Q Consensus 93 ------------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 148 (308)
++++++|+++|++.|+..++.+.+++|++|+++|++..++.+.+..+|.++++.++
T Consensus 103 a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~ 182 (491)
T 4gc0_A 103 AWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVN 182 (491)
T ss_dssp HCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcc
Confidence 24788999999999999999999999999999999999999999999999888776
Q ss_pred hhh------------hhHHHHHh----------hhcccccCchhHhhcCChHHHHHHHHHhcCCCcchHHHHHHH--HHH
Q 048448 149 ALM------------SWRILALT----------GLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEI--LSK 204 (308)
Q Consensus 149 ~~~------------~w~~~~~~----------~~~~~~esp~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~ 204 (308)
... .||+.+.+ ..+++||||+|+..+++.+++++.+++..+++...++..+.. ...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 262 (491)
T 4gc0_A 183 YFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDH 262 (491)
T ss_dssp HHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHh
Confidence 543 47766554 557899999999999999999999888765432211111110 000
Q ss_pred ------------HHHHHHH-------------------HHHHHHhcCCccc---------------------hhhccccc
Q 048448 205 ------------RITLILQ-------------------ESLALINQLPRVN---------------------ILDLFNRR 232 (308)
Q Consensus 205 ------------~~~~~~~-------------------~~~~~~~~~~~~~---------------------~~~l~~~~ 232 (308)
..+.... ............. +.|-+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr 342 (491)
T 4gc0_A 263 GRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK 342 (491)
T ss_dssp HHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred hhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 0000000 0000000000000 00000000
Q ss_pred hhhHH-----------------------------HHHHHhhhccccccccceecccCCCCchhhHhHHHHHHHHHHHHHH
Q 048448 233 NIRFV-----------------------------NVYIAFYSIGMGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAI 283 (308)
Q Consensus 233 ~~~~~-----------------------------~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~ 283 (308)
..... +++..+++.+++|++|++.+|++|++.|+++.|++++++++++++.
T Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~ 422 (491)
T 4gc0_A 343 PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFV 422 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 00000 4445667778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc--------------------------------CCCCHHHHHhhcC
Q 048448 284 SYSFILLMTWSS--------------------------------CGRTLEEVQASVS 308 (308)
Q Consensus 284 ~~~~~~~~~~~~--------------------------------~g~~~~~~~~~~~ 308 (308)
++++|.+.+... ||||+||||++|+
T Consensus 423 ~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 423 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 999988754211 9999999999986
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-19 Score=159.75 Aligned_cols=117 Identities=18% Similarity=0.226 Sum_probs=107.4
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------- 92 (308)
..+...+...+..|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (438)
T 3o7q_A 37 LWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN 116 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4455556667778889999999999999999999999999999999999999999988
Q ss_pred -HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 93 -PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 93 -~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+.++++|++.|++.|...+....++.|++|+++|++..++.+.+..+|.++++.++..+
T Consensus 117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999988776
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-20 Score=168.35 Aligned_cols=135 Identities=11% Similarity=0.022 Sum_probs=115.9
Q ss_pred cCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------
Q 048448 36 KNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------- 92 (308)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------- 92 (308)
.....+...+..+.+.+++ .++.+.+++.+++.++..++++++|+++||+|||+++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 118 (451)
T 1pw4_A 40 YYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 118 (451)
T ss_dssp HHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 3444444556678899999 9999999999999999999999999999999999988
Q ss_pred -HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHh-------
Q 048448 93 -PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----S-WRILALT------- 159 (308)
Q Consensus 93 -~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~-w~~~~~~------- 159 (308)
+.++++|++.|++.+...+...+++.|++|+++|++..++.+.+..+|.++++.++..+ + ||+.+++
T Consensus 119 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~ 198 (451)
T 1pw4_A 119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL 198 (451)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 24678899999999999999999999999999999999999999999999988887663 6 9987665
Q ss_pred ----hhcccccCchhH
Q 048448 160 ----GLFFIPESPRWL 171 (308)
Q Consensus 160 ----~~~~~~esp~~~ 171 (308)
..+++||+|+..
T Consensus 199 ~~~~~~~~~~~~~~~~ 214 (451)
T 1pw4_A 199 VALFAFAMMRDTPQSC 214 (451)
T ss_dssp HHHHHHHHCCCSSTTT
T ss_pred HHHHHHhhccCCHhhc
Confidence 335678888653
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-18 Score=150.24 Aligned_cols=133 Identities=19% Similarity=0.221 Sum_probs=117.2
Q ss_pred CccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHH
Q 048448 38 QAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDF 97 (308)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~ 97 (308)
...+...+..+.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++ +.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (375)
T 2gfp_A 14 MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIA 93 (375)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444555667888999999999999999999999999999999999999999988 67888
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh-----------hhc
Q 048448 98 GRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT-----------GLF 162 (308)
Q Consensus 98 ~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~-----------~~~ 162 (308)
.|++.|++.+...+....++.|++|+++|++..++.+.+..+|..+++.++..+ +||+.+++ ..+
T Consensus 94 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (375)
T 2gfp_A 94 ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR 173 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888775 89988876 234
Q ss_pred ccccCchh
Q 048448 163 FIPESPRW 170 (308)
Q Consensus 163 ~~~esp~~ 170 (308)
++||+++.
T Consensus 174 ~~~~~~~~ 181 (375)
T 2gfp_A 174 WMPETRPV 181 (375)
T ss_dssp SSCCCSTT
T ss_pred HCcccCCC
Confidence 57887654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-16 Score=143.14 Aligned_cols=116 Identities=16% Similarity=0.081 Sum_probs=102.9
Q ss_pred cccccccccc-----cCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccchH--------------------HHHHH
Q 048448 44 NPTQFGIMAD-----LKESYAEYSLFGSILTIGAIIGAITSGRIADW-VARKGAA--------------------PLLDF 97 (308)
Q Consensus 44 ~~~~~~l~~~-----~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~-~Grr~~~--------------------~~~~~ 97 (308)
....+++.++ +|++..+.+++.+++.++..++++++|+++|| +|||+++ +.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFG 113 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344556555 99999999999999999999999999999999 8999988 77889
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCCC--chhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 98 GRFLAGCGIGVMSYVVPVYIAEITPKNL--RAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 98 ~r~l~G~~~g~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+|++.|++.|...+...++++|++|+++ |+...++++.+..+|..+++.++..+ +||+.+++
T Consensus 114 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999988 77788888899999998888887765 89998877
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.3e-13 Score=123.77 Aligned_cols=116 Identities=18% Similarity=0.110 Sum_probs=102.1
Q ss_pred cccccccccccC------CChhHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccchH---------------------HHH
Q 048448 44 NPTQFGIMADLK------ESYAEYSLFGSILTIGAIIGAITSGRIADWV-ARKGAA---------------------PLL 95 (308)
Q Consensus 44 ~~~~~~l~~~~~------l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~-Grr~~~---------------------~~~ 95 (308)
....+++.+++| +++.+.+++.+++.++..++++++|+++||+ |||+++ +.+
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGF 112 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 334456778888 9999999999999999999999999999999 999987 457
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHH---HHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATV---NQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+++|++.|++.+...+...+++.|++|+++|++..++ .+.+..+|..+++.++..+ +|++.+++
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 7889999999999999999999999999999877666 8888899999998887765 79988876
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.9e-13 Score=119.74 Aligned_cols=112 Identities=10% Similarity=0.013 Sum_probs=71.6
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchHH-----------HH-------------HHHHHHHH
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAAP-----------LL-------------DFGRFLAG 103 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~~-----------~~-------------~~~r~l~G 103 (308)
.++.+++|+++.+.+++.+++.++..++++++|+++||+|||+++. .+ +.++++.|
T Consensus 32 ~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (417)
T 2cfq_A 32 IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGG 111 (417)
T ss_dssp HHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGG
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466779999999999999999999999999999999999999880 00 01112222
Q ss_pred hhhhccccchhhhhhccCCC--CCchhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHh
Q 048448 104 CGIGVMSYVVPVYIAEITPK--NLRAALATVNQLFIVTGALFAYVIGALM---SWRILALT 159 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~w~~~~~~ 159 (308)
++.|...+.....+.++.++ ++++...+....+..+|..+++.++..+ +|++.+++
T Consensus 112 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~ 172 (417)
T 2cfq_A 112 IYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWL 172 (417)
T ss_dssp SSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 22222222223333344432 3445555555555556666666655544 68888876
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-07 Score=86.01 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=94.9
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccchH-----------------------HHHHHHHHHH
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV--ARKGAA-----------------------PLLDFGRFLA 102 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~--Grr~~~-----------------------~~~~~~r~l~ 102 (308)
..+.+.+|.++.+.+++.++..++.+++.++.|++.||+ |||+.+ +.+++..++.
T Consensus 277 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (451)
T 1pw4_A 277 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 356 (451)
T ss_dssp HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 344455899999999999999999999999999999999 999876 3445566778
Q ss_pred HhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHH-HHHHHHHHhhhh----hhHHHHHh
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVT-GALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~----~w~~~~~~ 159 (308)
|++.+...+....++.|.+|++.|++..++.+....+ |..+++.+.+.+ +|+..+++
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 418 (451)
T 1pw4_A 357 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 418 (451)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 8888888888889999999999999999999999998 998888887765 67776665
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-07 Score=87.06 Aligned_cols=100 Identities=15% Similarity=0.054 Sum_probs=73.5
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------------HHHHHHHH--
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------------PLLDFGRF-- 100 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------------~~~~~~r~-- 100 (308)
.+.+.+..+.+............+...++.++++++.||+|||+.+ ...++.-+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 379 (491)
T 4gc0_A 300 APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFY 379 (491)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3456677777777777778888899999999999999999999977 11111111
Q ss_pred HHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 048448 101 LAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVI 147 (308)
Q Consensus 101 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l 147 (308)
..+++. +..++.+.+.+|.+|.+.|+++.++.+....+|.++++.+
T Consensus 380 ~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~ 425 (491)
T 4gc0_A 380 VAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWT 425 (491)
T ss_dssp HHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 2345677899999999999999999888887777776544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-07 Score=84.11 Aligned_cols=111 Identities=6% Similarity=-0.111 Sum_probs=86.9
Q ss_pred ccc-cccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHHHHHHHHHHhhh
Q 048448 47 QFG-IMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLLDFGRFLAGCGI 106 (308)
Q Consensus 47 ~~~-l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~~r~l~G~~~ 106 (308)
..+ +.+.+|.++.+.+++.++..++.+++.++.|+++||+|||+++ ...++.-++.|++.
T Consensus 282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 361 (438)
T 3o7q_A 282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFM 361 (438)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 345 5566699999999999999999999999999999999999988 22233447788888
Q ss_pred hccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHh
Q 048448 107 GVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----S-WRILALT 159 (308)
Q Consensus 107 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~-w~~~~~~ 159 (308)
+...+....+..|.+|++ ++...++.. ...+|..+++.+.+.+ + ++..+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 417 (438)
T 3o7q_A 362 SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_dssp TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHH
T ss_pred HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 888999999989999876 777777766 4457777777776654 4 5555444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.9e-07 Score=82.73 Aligned_cols=102 Identities=13% Similarity=0.030 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhccccchhhhh
Q 048448 58 YAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSYVVPVYI 117 (308)
Q Consensus 58 ~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~~~~~~~ 117 (308)
....++..++..++..++.++.|+++||+|||+++ +.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888889999999999999999999877 2233333445555555555667899
Q ss_pred hccCCCCCchhHHHH-HHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 118 AEITPKNLRAALATV-NQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 118 ~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.|.+|++.|++..++ ++....+|..++|.+.+.+ ++...|.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~ 384 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHH
Confidence 999999999998888 4777778888877776654 55555544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-06 Score=79.51 Aligned_cols=103 Identities=14% Similarity=0.019 Sum_probs=83.9
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------------------HH
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------------------PL 94 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------------------~~ 94 (308)
+..+..+.+....+++.+...++..++.++.+++.||+|||+.. +.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4aps_A 309 FAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLW 388 (491)
T ss_dssp HHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHH
T ss_pred HHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHH
Confidence 34444566656677888888999999999999999999998532 12
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+++.-++.|++.+...+....++.|.+|++.|+.+.++.+....+|..+++.+...+
T Consensus 389 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~ 445 (491)
T 4aps_A 389 LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY 445 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888888899999999999999999999999999999999999988765
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.2e-07 Score=80.91 Aligned_cols=110 Identities=17% Similarity=-0.006 Sum_probs=89.6
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHHHHhh
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFLAGCG 105 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l~G~~ 105 (308)
.+.+.+|.++.+.+.+.+...++..++.++.+++.||+|++..+ +.+++.-++.|++
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 304 (375)
T 2gfp_A 225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG 304 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence 44455889999999999999999999999999999999984333 2344566788899
Q ss_pred hhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 106 IGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 106 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.+...+....++.|..| ++|++..++.+....+|..+++.+...+ +|+..+++
T Consensus 305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999999999999998 8999999999999999988887776655 45544443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0041 Score=56.98 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+++.-++.|++.+...+....++.|.+|++.||..+++.+....+|..+++.+...+
T Consensus 408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~ 464 (524)
T 2xut_A 408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV 464 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667788888888899999999999999999999999999999999988887665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 308 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 8e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 44.7 bits (104), Expect = 8e-06
Identities = 27/269 (10%), Positives = 65/269 (24%), Gaps = 33/269 (12%)
Query: 50 IMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARK-------------------- 89
+ + S + S ++I G ++D +
Sbjct: 50 YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 109
Query: 90 ----GAAPLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAY 145
+ ++ FL G G+ + + R + +V G
Sbjct: 110 PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 169
Query: 146 VIGALMSWRILALTGLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEILSKR 205
++ L ++P L + + + S L I +
Sbjct: 170 LLFLLGMAWFNDWHAALYMPAFCAILVAL---------FAFAMMRDTPQSCGLPPIEEYK 220
Query: 206 ITLILQESLALINQLPRVNILDLFNRRNIRFVNVYIAFYSIGMGPIPWVIMFEIFPLNIK 265
+ +L I + N + IA + + + + +K
Sbjct: 221 NDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVK 280
Query: 266 GPGGSLVTLVNWIGSWAISYSFILLMTWS 294
+ ++ +A +L S
Sbjct: 281 HFALDKSSWAYFLYEYAGIPGTLLCGWMS 309
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 308 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.82 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.41 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.56 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.54 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=9.8e-22 Score=176.02 Aligned_cols=124 Identities=12% Similarity=0.051 Sum_probs=105.2
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------------HHHHHHHHH
Q 048448 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------------PLLDFGRFL 101 (308)
Q Consensus 46 ~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------------~~~~~~r~l 101 (308)
..|.+. ++|++.++.|++.+++.+++.++++++|+++||+|||+++ ..+++.|++
T Consensus 47 ~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (447)
T d1pw4a_ 47 AMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 125 (447)
T ss_dssp HHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHH
T ss_pred HHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Confidence 345554 6899999999999999999999999999999999999987 567889999
Q ss_pred HHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHh-----------hhcccc
Q 048448 102 AGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM-----SWRILALT-----------GLFFIP 165 (308)
Q Consensus 102 ~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~-----~w~~~~~~-----------~~~~~~ 165 (308)
.|++.|...+....++.|++|+++|++.+++.+.+..+|..+++.+.... +||+.+++ ...+.+
T Consensus 126 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 126 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988887765543 67765544 345566
Q ss_pred cCchh
Q 048448 166 ESPRW 170 (308)
Q Consensus 166 esp~~ 170 (308)
++|+.
T Consensus 206 ~~~~~ 210 (447)
T d1pw4a_ 206 DTPQS 210 (447)
T ss_dssp CSSTT
T ss_pred cchhh
Confidence 66643
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=4.1e-14 Score=123.35 Aligned_cols=56 Identities=7% Similarity=-0.121 Sum_probs=47.2
Q ss_pred CCcccccccccc-ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH
Q 048448 37 NQAKEQQNPTQF-GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA 92 (308)
Q Consensus 37 ~~~~~~~~~~~~-~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~ 92 (308)
....+...+..+ ++.+++|+++.+.|++.+++.++..+++++.|+++||+|||+++
T Consensus 20 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l 76 (417)
T d1pv7a_ 20 FFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL 76 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 334444455555 46778999999999999999999999999999999999999987
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=3.4e-08 Score=84.89 Aligned_cols=109 Identities=13% Similarity=0.041 Sum_probs=89.3
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhccc
Q 048448 51 MADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMS 110 (308)
Q Consensus 51 ~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~ 110 (308)
..+.+.+....+...+...++..++..+.+++.||+|+|+.+ +.+++..++.|++.+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHH
Confidence 344455666778888889999999999999999999999988 666777888999999999
Q ss_pred cchhhhhhccCCCCCchhHHHHH-HHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 111 YVVPVYIAEITPKNLRAALATVN-QLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 111 ~~~~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+....++.|.+|++.|++..++. +....+|..+++.+.+.+ +|+..+++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~ 384 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 99999999999999999998874 556677777777766554 77776655
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=8.2e-08 Score=84.09 Aligned_cols=114 Identities=17% Similarity=0.102 Sum_probs=92.2
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------------HHHHHHHH
Q 048448 46 TQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------------PLLDFGRF 100 (308)
Q Consensus 46 ~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------------~~~~~~r~ 100 (308)
...++.+..+.+..+.+...++..++..++.++.|++.||++|+... +..++.-+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 351 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34567778899999999999999999999999999999999987643 44555667
Q ss_pred HHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHH-HHHHHHHHhhhh----hhHHHHHh
Q 048448 101 LAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVT-GALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 101 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+.|++.++..+....+..|.+|++.||.+.++.+....+ |.++++.+.+.+ +|+..+++
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~ 415 (447)
T d1pw4a_ 352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 415 (447)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 788888888888899999999999999999998776665 456666665554 77776655
|