Citrus Sinensis ID: 048459

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
MEEVSDMEEEKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSGDFVESDERFRSRERGGRKRKCPTVEMLIRKRVSLPSPTQSCNLYED
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHHHHcccccHHHHHHHHccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcccccccHHEHHHccccccccccccccccEccccHHHHHHHHcccccccccccccccccccccccccccccEcccccHHHHHHHcccccccEcccccccccEccccHHHHHHHHccccccEcccccccccEcccccHHEHHHHcccccccccccccccccEcccccccccEccccHHHHHHHHcccccccccccccccccccEcccccHHEEHcccccccccccccccccccHHHHHHHHccccccccccccccccccccEccccHHHHHHHHHccccccEEcccccccccEccccHHHHHccccccccccccccccHHHEccccccccccccccEEEEEHcEEcccccccccccccc
Coil and Loop (DISEMBL)
MEEVSDMeeekgleerpksrdvrRYYCDycgicrskkSLILSHIAShhkedeervdgdgetkgvqcntceecgasfkkpaYLKQHMLSHllerpfrcsvddchasyrrkDHLTRHLLRHqgklfkcpiencnreftiQGNMKRHVKElhhegttstdsgdqkqYICQEIGCGKVFKYASKLRQHEDSHVNLDSveafcsepgcmkyftnkQCLEAHIRSchqyipceicgsmqlkKNIKRHVRTHEARDLSERIKCQFKgcllsfstnsnlRQHVKAVHYeikpfacsffgcgmrfAFKHVrdnheksghhvyssgdfvesderfrsrerggrkrkcptVEMLIRkrvslpsptqscnlyed
Flexible Loop (DISEMBL)
meevsdmeeekgleerpksrdvrrYYCDYCGICRSKKSLILSHIAShhkedeervdgdgetKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHqgklfkcpieNCNREFTIQGNMKRHVKELHHegttstdsgdqkQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEksghhvyssgdfvesderfrsrerggrkrkcptvemlirkrvslpsptqscnlyed
Low Complexity Region (SEG)
MEEVSDMEEEKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSGDFVESDerfrsrerggrkrkCPTVEMLIRKRVSLPSPTQSCNLYED
Disordered region (IsUnstruct)
*********************VRRYYCDYCGICRSKKSLILSHIA*****************GVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMK********************QYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRD***********************************************************
Disordered Region (DISOPRED)
********************DVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSGDF****************RKCPTVEMLIRKRV**************
Disordered Region (DISEMBL)
******************SRDVRRYYCDYCGICRSKKSLILSHIA****************KGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVK**************QKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSGDFVE**************RKCPTVEMLIRKRVSLPSP*********
Disordered Region (DISPRO)
MEEVSDMEEEKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSGDFVESDERFRSRERGGRKRKCPTVEMLIRKRVSLPSPTQSCN*Y**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEVSDMEEEKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSGDFVESDERFRSRERGGRKRKCPTVEMLIRKRVSLPSPTQSCNLYED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
Q8VHT8	363	Transcription factor IIIA	yes	no	0.596	0.595	0.328	1e-27
Q8VHT7	364	Transcription factor IIIA	yes	no	0.596	0.593	0.324	8e-27
Q92664	365	Transcription factor IIIA	yes	no	0.613	0.608	0.316	6e-26
P17842	339	Transcription factor IIIA	N/A	no	0.704	0.752	0.285	1e-23
P03001	366	Transcription factor IIIA	N/A	no	0.610	0.603	0.309	1e-23
P34694	339	Transcription factor IIIA	N/A	no	0.616	0.657	0.290	3e-23
P34695	335	Transcription factor IIIA	N/A	no	0.627	0.677	0.287	2e-21
Q9UTL5	374	Transcription factor IIIA	yes	no	0.621	0.601	0.285	3e-19
P98169	803	Zinc finger X-linked prot	no	no	0.671	0.302	0.317	2e-18
A2CE44	873	Zinc finger X-linked prot	no	no	0.638	0.264	0.315	6e-18

>sp|Q8VHT8|TF3A_RAT Transcription factor IIIA OS=Rattus norvegicus GN=Gtf3a PE=2 SV=2

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 126/259 (48%), Gaps = 43/259 (16%)

Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIE 129
           +C AS+ K   L  H+  H  ERPF C  + C  ++ R  HL+RH+L H G K F C   
Sbjct: 44  DCSASYNKAWKLDAHLCKHTGERPFVCDYEGCGKAFIRDYHLSRHILIHTGEKPFVCADN 103

Query: 130 NCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
            CN++F+ + N+K+H++  H           QKQY+C   GC K FK   +LR H+  H 
Sbjct: 104 GCNQKFSTKSNLKKHIERKH--------ENPQKQYVCNFEGCKKAFKKHQQLRTHQCQHT 155

Query: 190 NLDSVEAFCSEPGCMKYFTN-----------------KQC---------LEAHIRSCH-Q 222
           N       C+  GC K+F +                 K C         L  H R  H +
Sbjct: 156 NEPLFR--CTHEGCGKHFASPSRLKRHGKVHEGYLCQKGCSFVGKTWTELLKHTREAHKE 213

Query: 223 YIPCEICGSM-QLKKNIKRHVRTHEA-RDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHY 280
            + C +C  M + K ++K+H++TH   RD+    +C  +GC  +++T  NL+ H+ + H 
Sbjct: 214 EVTCTVCQKMFKRKDHLKQHMKTHAPERDV---YRCPREGCARTYTTVFNLQSHILSFHE 270

Query: 281 EIKPFACSFFGCGMRFAFK 299
           E +PF C   GCG  FA K
Sbjct: 271 EKRPFVCEHAGCGKTFAMK 289

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's. May initiate transcription of the 5S ribosomal RNA gene and maintain the stability of transcription of other genes.
Rattus norvegicus (taxid: 10116)

>sp|Q8VHT7|TF3A_MOUSE Transcription factor IIIA OS=Mus musculus GN=Gtf3a PE=2 SV=2

 Score =  121 bits (304), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 127/259 (49%), Gaps = 43/259 (16%)

Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIE 129
           +C AS+ K   L  H+  H  ERPF C  + C  ++ R  HL+RH+L H G K F C  +
Sbjct: 44  DCSASYNKAWKLDAHLCKHTGERPFVCDYEGCGKAFIRDYHLSRHVLIHTGEKPFVCADD 103

Query: 130 NCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
            CN++F  + N+K+H++  H           QKQY+C   GC K FK   +LR H+  H 
Sbjct: 104 GCNQKFNTKSNLKKHIERKH--------GNPQKQYVCSYEGCKKAFKKHQQLRTHQCQHT 155

Query: 190 NLDSVEAFCSEPGCMKYFTN-----------------KQC---------LEAHIRSCHQY 223
           +       C+  GC K+F +                 K C         L  H+R  H+ 
Sbjct: 156 SEPLFR--CTHEGCGKHFASPSRLKRHGKVHEGYLCQKGCSFMGKTWTELLKHMREAHKE 213

Query: 224 -IPCEICGSMQLKKN-IKRHVRTHEA-RDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHY 280
            I C +C  M  +++ +K+H++TH   RD+    +C  +GC  +++T  NL+ H+ + H 
Sbjct: 214 DITCNVCQRMFKRRDYLKQHMKTHAPERDV---YRCPRQGCGRTYTTVFNLQSHILSFHE 270

Query: 281 EIKPFACSFFGCGMRFAFK 299
           E +PF C   GCG  FA K
Sbjct: 271 EKRPFVCEHAGCGKTFAMK 289

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's. May initiate transcription of the 5S ribosomal RNA gene and maintain the stability of transcription of other genes.

Mus musculus (taxid: 10090)

>sp|Q92664|TF3A_HUMAN Transcription factor IIIA OS=Homo sapiens GN=GTF3A PE=1 SV=3

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 127/265 (47%), Gaps = 43/265 (16%)

Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIE 129
           +C A++ K   L  H+  H  ERPF C  + C  ++ R  HL+RH+L H G K F C   
Sbjct: 46  DCSANYSKAWKLDAHLCKHTGERPFVCDYEGCGKAFIRDYHLSRHILTHTGEKPFVCAAN 105

Query: 130 NCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
            C+++F  + N+K+H +  H           QKQYIC    C K FK   +L+ H+  H 
Sbjct: 106 GCDQKFNTKSNLKKHFERKH--------ENQQKQYICSFEDCKKTFKKHQQLKIHQCQHT 157

Query: 190 NLDSVEAFCSEPGCMKYFTN-----------------KQC---------LEAHIRSCH-Q 222
           N    +  C++ GC K+F +                 K C         L  H+R  H +
Sbjct: 158 NEPLFK--CTQEGCGKHFASPSKLKRHAKAHEGYVCQKGCSFVAKTWTELLKHVRETHKE 215

Query: 223 YIPCEIC-GSMQLKKNIKRHVRTHEA-RDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHY 280
            I CE+C  + + K  +K+H++TH   RD+    +C  +GC  +++T  NL+ H+ + H 
Sbjct: 216 EILCEVCRKTFKRKDYLKQHMKTHAPERDV---CRCPREGCGRTYTTVFNLQSHILSFHE 272

Query: 281 EIKPFACSFFGCGMRFAFKHVRDNH 305
           E +PF C   GCG  FA K     H
Sbjct: 273 ESRPFVCEHAGCGKTFAMKQSLTRH 297

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's. May initiate transcription of the 5S ribosomal RNA gene and maintain the stability of transcription of other genes.

Homo sapiens (taxid: 9606)

>sp|P17842|TF3A_XENBO Transcription factor IIIA OS=Xenopus borealis GN=gtf3a PE=2 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 139/319 (43%), Gaps = 64/319 (20%)

Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIE 129
           +CGAS+ K   L+ H+  H  E+PF C  + C   +    HLTRH + H G K FKC  +
Sbjct: 19  DCGASYNKNWKLRAHLCKHTGEKPFPCKEEGCDKGFTSLHHLTRHSITHTGEKNFKCDSD 78

Query: 130 NCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
            C+  FT + NMK+H    H+             Y+C   GC K FK  ++L+ H+ +H 
Sbjct: 79  KCDLTFTTKANMKKHFNRFHNLQLCV--------YVCHFEGCDKAFKKHNQLKVHQFTHT 130

Query: 190 NLDSVEAFCSEPGCMKYFTNKQCLE----------------------------AHIRSCH 221
               +   C   GC K F+   CL+                             H++ CH
Sbjct: 131 Q--QLPYKCPHEGCDKSFSVPSCLKRHEKVHAGYPCKKDDSCLFVGKTWTLYLKHVKECH 188

Query: 222 Q-YIPCEICG-SMQLKKNIKRHVRTHEARDLSERIK--CQFKGCLLSFSTNSNLRQHVKA 277
           Q  + C+ C  + + K  ++ H +TH+     ER    C   GC  S++T  NL+ H+++
Sbjct: 189 QEPVMCDECKRTFKHKDYLRNHKKTHK----KERTVYCCPRDGCERSYTTEFNLQSHMQS 244

Query: 278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSGDFVESDERFRSRERGGRKRKC 337
            H E +PFAC    CG  FA K   + H             V   E+ + +E      KC
Sbjct: 245 FHEEQRPFACEHAECGKSFAMKKSLERH-----------SVVHDPEKRKLKE------KC 287

Query: 338 PTVEMLIRKRVSLPSPTQS 356
           P  +  +  R+S  +P +S
Sbjct: 288 PRPKRSLASRLSGCAPPKS 306

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's.

Xenopus borealis (taxid: 8354)

>sp|P03001|TF3A_XENLA Transcription factor IIIA OS=Xenopus laevis GN=gtf3a PE=1 SV=2

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 118/268 (44%), Gaps = 47/268 (17%)

Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIE 129
           +CGA++ K   L+ H+  H  E+PF C  + C   +    HLTRH L H G K F C  +
Sbjct: 41  DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 100

Query: 130 NCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
            C+  FT + NMK+H    H+             Y+C    CGK FK  ++L+ H+ SH 
Sbjct: 101 GCDLRFTTKANMKKHFNRFHNIKICV--------YVCHFENCGKAFKKHNQLKVHQFSHT 152

Query: 190 NLDSVEAFCSEPGCMKYFTNKQCLE----------------------------AHIRSCH 221
                E  C   GC K F+    L+                             H+  CH
Sbjct: 153 QQLPYE--CPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 210

Query: 222 QYIP-CEICG-SMQLKKNIKRHVRTHEARDLSERIK--CQFKGCLLSFSTNSNLRQHVKA 277
           Q +  C++C    + K  ++ H +THE     ER    C   GC  S++T  NLR H+++
Sbjct: 211 QDLAVCDVCNRKFRHKDYLRDHQKTHE----KERTVYLCPRDGCDRSYTTAFNLRSHIQS 266

Query: 278 VHYEIKPFACSFFGCGMRFAFKHVRDNH 305
            H E +PF C   GCG  FA K   + H
Sbjct: 267 FHEEQRPFVCEHAGCGKCFAMKKSLERH 294

Acts as both a positive transcription factor for 5S RNA genes and a specific RNA binding protein that complexes with 5S RNA in oocytes to form the 7S ribonucleoprotein storage particle. May play an essential role in the developmental change in 5S RNA gene expression. Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's.

Xenopus laevis (taxid: 8355)

>sp|P34694|TF3A_ANAAE Transcription factor IIIA OS=Anaxyrus americanus GN=gtf3a PE=2 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 115/265 (43%), Gaps = 42/265 (15%)

Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIE 129
           +C A++ K   L+ H+  H  ERPF C+ + C   +    HL RH+L H G K  KC  E
Sbjct: 18  DCNATYNKNRKLQAHLCKHTGERPFPCTYEGCEKGFVTLHHLNRHVLSHTGEKPCKCETE 77

Query: 130 NCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
           NCN  FT   NM+ H K  H        S   + Y+C    CG+ F+  ++L+ H+  H 
Sbjct: 78  NCNLAFTTASNMRLHFKRAH--------SSPAQVYVCYFADCGQQFRKHNQLKIHQYIHT 129

Query: 190 NLDSVEAFCSEPGCMKYFTNKQCLEAHIRS----------------------------CH 221
           N    +  CS  GC K + +   L+ H ++                             H
Sbjct: 130 NQQPFK--CSHEGCDKCYASPSRLKRHEKTHAGYPCRKDSTCPFVGKTWSDYMKHAAELH 187

Query: 222 QYIPCEICG-SMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHY 280
             + C IC  + + K  +K H + H    +  R  C  + C  +++T  NL+ H+   H 
Sbjct: 188 SEVTCSICNRTFKRKSFLKEHKKIHREERIVYR--CPRENCDRTYTTKFNLKSHILTFHE 245

Query: 281 EIKPFACSFFGCGMRFAFKHVRDNH 305
            ++PF C   GCG  FA K   D H
Sbjct: 246 NLRPFVCEHEGCGKTFAMKQSLDRH 270

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's.

Anaxyrus americanus (taxid: 8389)

>sp|P34695|TF3A_RANPI Transcription factor IIIA OS=Rana pipiens GN=gtf3a PE=2 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 117/268 (43%), Gaps = 41/268 (15%)

Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIE 129
           +C AS+ K   L+ H+  H  ERPF C+V+ C   +    HLTRH + H G K  KC   
Sbjct: 19  DCSASYNKNWKLQAHLCKHTGERPFPCTVEGCGKGFVTLFHLTRHSMTHTGEKPCKCDAP 78

Query: 130 NCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
           +C+  FT   N+++H +  H   +          Y C    CG+ FK  ++L+ H+  H 
Sbjct: 79  DCDLSFTTMTNLRKHYQRAHLSPSLI--------YECYFADCGQTFKKHNQLKLHQYIHT 130

Query: 190 NLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCE---------------------- 227
           N    +  C+  GC K F++   L+ H +  H   PC+                      
Sbjct: 131 NQQPFK--CNHEGCDKSFSSPSRLKRHEK-VHAGYPCQKDSSCSFVGKTWTEYMKHLAAS 187

Query: 228 -----ICGSMQLKKNIKRHVRTHEARDLSERI--KCQFKGCLLSFSTNSNLRQHVKAVHY 280
                IC     K   K H++ H+     ER+  KC   GC  +++    L+ H+ + H 
Sbjct: 188 HSEPTICDVCNRKFKNKTHLKDHKRTHEVERVVYKCPRDGCDRTYTKKFGLQSHILSFHE 247

Query: 281 EIKPFACSFFGCGMRFAFKHVRDNHEKS 308
           + +PFAC   GCG  FA K   D H  +
Sbjct: 248 DSRPFACGHPGCGKTFAMKQSLDRHANT 275

Interacts with the internal control region (ICR) of approximately 50 bases within the 5S RNA genes, is required for correct transcription of these genes by RNA polymerase III. Also binds the transcribed 5S RNA's.

Rana pipiens (taxid: 8404)

>sp|Q9UTL5|TF3A_SCHPO Transcription factor IIIA OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfc2 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 52/277 (18%)

Query: 70  EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI 128
           EECG  + +P+ L+QH+ +H  ERPF C    C  ++ RK HL  H   H   K F C  
Sbjct: 28  EECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHY 87

Query: 129 ENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDS- 187
           + C+ +F  Q +++RH+ E+H +          K Y C   GC + F    +LR H  + 
Sbjct: 88  DGCDAQFYTQQHLERHI-EVHRK---------PKPYACTWEGCDECFSKHQQLRSHISAC 137

Query: 188 HVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQ------------------------- 222
           H +L  +   C+   C   F  KQ L+ H+   H+                         
Sbjct: 138 HTHL--LPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQ 195

Query: 223 ------YIP-CEICG-SMQLKKNIKRHVRTHEARDLSER--IKCQFKGCLLSFSTNSNLR 272
                 ++P C ICG   +   +++ HV  H+   L ER    C  +GC  SF+ +S L+
Sbjct: 196 NHIREAHVPSCSICGRQFKTAAHLRHHVVLHQT-TLEERKTYHCPMEGCKKSFTRSSALK 254

Query: 273 QHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSG 309
           +H+  +H     F C    CG +F +KH+   H + G
Sbjct: 255 KHISVIHEGNMAFHCD--SCGTKFGYKHMLQRHLERG 289

Is required for correct transcription of 5S RNA genes by RNA polymerase III. Also binds the transcribed 5S RNA's. Initiates transcription of the 5S ribosomal RNA gene.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P98169|ZXDB_HUMAN Zinc finger X-linked protein ZXDB OS=Homo sapiens GN=ZXDB PE=2 SV=2

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 120/280 (42%), Gaps = 37/280 (13%)

Query: 59  GETKGVQCNTCEE--CGASFKKPAYLKQHMLSHLL---ERPFRCSVDDCHASYRRKDHLT 113
           G   GV    C E  CG +F K   LK H+L+H     +RPF+C +  C  ++     L 
Sbjct: 263 GSGPGVVLYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLGGCGWTFTTSYKLK 322

Query: 114 RHLLRH-QGKLFKCPIENCNREFTIQGNMKRHVKELHHEG------------TTSTDSGD 160
           RHL  H + + F CP E C + FT   N+K H+K    E             T +  S  
Sbjct: 323 RHLQSHDKLRPFGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEVCEESFPTQAKLSAH 382

Query: 161 QKQ-------YICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQC- 212
           Q+        Y C   GC K F   S L  H  +H     + + CS PGC K + +K C 
Sbjct: 383 QRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFS-CSFPGCSKQY-DKACR 440

Query: 213 LEAHIRSCHQYIP--CEI--CG-SMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFST 267
           L+ H+RS     P  C+   CG +      + RH R H   D   R  C  +GC  SF+ 
Sbjct: 441 LKIHLRSHTGERPFLCDFDGCGWNFTSMSKLLRHKRKH---DDDRRFMCPVEGCGKSFTR 497

Query: 268 NSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEK 307
             +L+ H    H   KPF C   GC  RF+ +     H K
Sbjct: 498 AEHLKGH-SITHLGTKPFVCPVAGCCARFSARSSLYIHSK 536

Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.

Homo sapiens (taxid: 9606)

>sp|A2CE44|ZXDAB_MOUSE Zinc finger X-linked protein ZXDA/ZXDB OS=Mus musculus GN=Zxda PE=2 SV=1

 Score = 92.0 bits (227), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 117/266 (43%), Gaps = 35/266 (13%)

Query: 71  ECGASFKKPAYLKQHMLSHLL---ERPFRCSVDDCHASYRRKDHLTRHLLRH-QGKLFKC 126
           +CG +F K   LK H+L+H     +RPF+C +  C  ++     L RHL  H + + F C
Sbjct: 346 QCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLSGCGWTFTTSYKLKRHLQSHDKLRPFGC 405

Query: 127 PIENCNREFTIQGNMKRHVKELHHEG------------TTSTDSGDQKQ-------YICQ 167
           P++ C + FT   N+K H+K    E             T +  S  Q+        Y C 
Sbjct: 406 PVQGCGKSFTTVYNLKAHMKGHEQENSFKCEVCEESFPTQAKLSTHQRSHFEPERPYQCA 465

Query: 168 EIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQC-LEAHIRSCHQYIP- 225
             GC K F   S L  H  +H     + A CS PGC K + +K C L+ H+RS     P 
Sbjct: 466 FSGCKKTFITVSALFSHNRAHFREQELFA-CSFPGCSKQY-DKACRLKIHLRSHTGERPF 523

Query: 226 -CEI--CG-SMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYE 281
            C+   CG +      + RH R HE      R  C  +GC  SF+   +L+ H    H  
Sbjct: 524 LCDFDGCGWNFTSMSKLLRHKRKHED---DRRFTCPVEGCGKSFTRAEHLKGH-SITHLG 579

Query: 282 IKPFACSFFGCGMRFAFKHVRDNHEK 307
            KPF C   GC  RF+ +     H K
Sbjct: 580 TKPFVCPVEGCCARFSARSSLYIHSK 605

Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
224135987	335	predicted protein [Populus trichocarpa]	0.917	0.991	0.728	1e-138
255585808	367	zinc finger protein, putative [Ricinus c	0.955	0.942	0.687	1e-135
225440266	370	PREDICTED: zinc finger and SCAN domain-c	0.955	0.935	0.673	1e-134
356499400	362	PREDICTED: zinc finger protein 84-like [	0.983	0.983	0.644	1e-131
297741741	390	unnamed protein product [Vitis vinifera]	0.955	0.887	0.636	1e-131
356499396	371	PREDICTED: zinc finger protein 845-like	0.966	0.943	0.644	1e-129
350535825	372	transcription factor IIIA [Solanum lycop	0.917	0.892	0.641	1e-123
357515205	415	Zinc finger protein [Medicago truncatula	0.969	0.845	0.547	1e-117
297839055	392	hypothetical protein ARALYDRAFT_476336 [	0.950	0.877	0.576	1e-115
357456389	395	Zinc finger protein [Medicago truncatula	0.944	0.865	0.523	1e-114

>gi|224135987|ref|XP_002327353.1| predicted protein [Populus trichocarpa] gi|222835723|gb|EEE74158.1| predicted protein [Populus trichocarpa]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/335 (72%), Positives = 278/335 (82%), Gaps = 3/335 (0%)

Query: 20  RDVRRYYCDYCGICRSKKSLILSHIASHHKE--DEERVDGDGETKGVQCNTCEECGASFK 77
           RD+RRYYCDYCGICRSKKSLI SH+ +HHKE  DEE VDGD   +GV+ NTCE CGASFK
Sbjct: 1   RDIRRYYCDYCGICRSKKSLITSHVLTHHKEEMDEESVDGDEGKEGVKSNTCENCGASFK 60

Query: 78  KPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTI 137
           KPAYL QHM SH LERPF+C  DDCHASYRRKDHLTRHLL+H+GKLFKC IENCNREF  
Sbjct: 61  KPAYLIQHMQSHSLERPFKCLFDDCHASYRRKDHLTRHLLQHEGKLFKCQIENCNREFVY 120

Query: 138 QGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAF 197
             N+KRHV+ELH E + S   G +KQY+CQE GCGK F+Y SKLR+HEDSHV+LD VEA 
Sbjct: 121 PSNLKRHVRELHDESSPSCSFGGEKQYVCQEPGCGKAFRYPSKLRKHEDSHVSLDHVEAM 180

Query: 198 CSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHE-ARDLSERIKC 256
           C EPGCMK+F+NK+CL+AHI+S HQYI C+ICG+ QLKKNIKRH+RTHE A D +ERIKC
Sbjct: 181 CLEPGCMKHFSNKECLKAHIQSSHQYINCDICGTKQLKKNIKRHLRTHEPASDSTERIKC 240

Query: 257 QFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSG 316
            F GC  +FST +NL QHVKAVH E +PF C F GC MRF++KHVRDNHEKSG HVY+ G
Sbjct: 241 HFNGCQHTFSTKTNLNQHVKAVHLEHRPFLCGFPGCDMRFSYKHVRDNHEKSGLHVYTPG 300

Query: 317 DFVESDERFRSRERGGRKRKCPTVEMLIRKRVSLP 351
           DFVESD +FRS+ RGGRKRK PTVEMLIRKRV+ P
Sbjct: 301 DFVESDRQFRSKPRGGRKRKFPTVEMLIRKRVTPP 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585808|ref|XP_002533583.1| zinc finger protein, putative [Ricinus communis] gi|223526542|gb|EEF28801.1| zinc finger protein, putative [Ricinus communis]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/355 (68%), Positives = 283/355 (79%), Gaps = 9/355 (2%)

Query: 1   MEEVSDMEEEKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKE--DEERVDGD 58
           MEE ++ E       RP  RD+RRY+CDYCGICRSKKSLI SHI +HHKE  ++++ D  
Sbjct: 1   MEETAESEIP-----RPIFRDIRRYFCDYCGICRSKKSLITSHIQTHHKEEMNKDKSDEG 55

Query: 59  GETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLR 118
            E  GV+ NTC ECGA+FKK AYL+QHM SH LERP+ CSVDDC ASYRRKDHL RHLL 
Sbjct: 56  VEADGVKSNTCAECGANFKKAAYLRQHMRSHSLERPYVCSVDDCQASYRRKDHLNRHLLI 115

Query: 119 HQGKLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYA 178
           H+GKLFKCPIENC REF +QGN+KRHVKELH E +     G +KQ++CQE GCGKVF+Y 
Sbjct: 116 HKGKLFKCPIENCYREFVVQGNVKRHVKELHCESSPCAKIG-EKQHVCQESGCGKVFRYL 174

Query: 179 SKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNI 238
           SKLR+HEDSHV LD+VEA C E GCMK+F+N QCL AHI+SCH+Y  CEICG+ QLKKN+
Sbjct: 175 SKLRKHEDSHVKLDAVEAICLESGCMKHFSNSQCLRAHIQSCHRYTTCEICGTKQLKKNL 234

Query: 239 KRHVRTHEARDLS-ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFA 297
           KRH+RTHE+   S ERIKCQFK C  +FS  +NL QHVKAVH E+KPFAC   GC  RF+
Sbjct: 235 KRHLRTHESGGSSVERIKCQFKDCCHTFSNKTNLNQHVKAVHLEVKPFACGIPGCDKRFS 294

Query: 298 FKHVRDNHEKSGHHVYSSGDFVESDERFRSRERGGRKRKCPTVEMLIRKRVSLPS 352
           FKHVRDNHEKSG HVY+ GDF ESDE+FRSR RGGRKRKCPTVEMLIRKRV+ P+
Sbjct: 295 FKHVRDNHEKSGCHVYTPGDFEESDEQFRSRPRGGRKRKCPTVEMLIRKRVTPPA 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440266|ref|XP_002278827.1| PREDICTED: zinc finger and SCAN domain-containing protein 10-like [Vitis vinifera]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/349 (67%), Positives = 280/349 (80%), Gaps = 3/349 (0%)

Query: 10  EKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEE--RVDGDGETKGVQCN 67
           E+G  + P  RDVRRY+CDYCG+CRSKK+LI +H+ SHHKE+ E  +V  + E +G + N
Sbjct: 3   ERGERKEPIFRDVRRYFCDYCGLCRSKKALIRAHMLSHHKEEMEGQKVHNNEEKEGEKSN 62

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCP 127
            CEECGASFKKPAYLKQHM SH LERPF C VDDC +SYRRKDHLTRHLL+HQGKLF CP
Sbjct: 63  ACEECGASFKKPAYLKQHMQSHSLERPFTCPVDDCQSSYRRKDHLTRHLLQHQGKLFTCP 122

Query: 128 IENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDS 187
           +ENC R F  QGNMKRH+KE H E +   D G  KQY+C E+GCGKVFK+ASKL++HEDS
Sbjct: 123 VENCKRRFAFQGNMKRHIKEFHDEESPPNDVGS-KQYVCPELGCGKVFKFASKLQKHEDS 181

Query: 188 HVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEA 247
           H  LDSVEA C EP C+K+FTN+QCL+AH++SCHQ+I CEICG+ QLKKNIKRH+RTHE+
Sbjct: 182 HAKLDSVEAVCLEPECLKHFTNEQCLKAHLQSCHQHIICEICGTKQLKKNIKRHLRTHES 241

Query: 248 RDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEK 307
              SER+KC FKGCL +FST SNL QHVKAVH +++PF C   GCGMRF FKHVRDNHEK
Sbjct: 242 VCSSERVKCHFKGCLHTFSTKSNLDQHVKAVHLKLRPFVCGIPGCGMRFPFKHVRDNHEK 301

Query: 308 SGHHVYSSGDFVESDERFRSRERGGRKRKCPTVEMLIRKRVSLPSPTQS 356
           +G HVY+ GDF E DE+FR R +GGRKRK P +E L+RKRV+ PS + S
Sbjct: 302 TGCHVYTHGDFEELDEQFRLRPKGGRKRKSPPIEALLRKRVTPPSQSDS 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499400|ref|XP_003518529.1| PREDICTED: zinc finger protein 84-like [Glycine max]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/360 (64%), Positives = 287/360 (79%), Gaps = 4/360 (1%)

Query: 7   MEEEKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEE--RVDGDGETKGV 64
           M E   +EERPK +D+RRYYC+YCGICRSKK+LI SHI  HHKE+ E  R + D E +  
Sbjct: 1   MCEAVEIEERPKYKDIRRYYCEYCGICRSKKTLITSHINLHHKEEYEKARAERDPEAEAS 60

Query: 65  QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLF 124
           + N+CEECGA+FKK AYL QHM SH LERPF C+VDDC ASYRRKDHLTRHLL+H+GK+F
Sbjct: 61  KSNSCEECGATFKKHAYLLQHMQSHSLERPFVCAVDDCQASYRRKDHLTRHLLQHEGKIF 120

Query: 125 KCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSG-DQKQYICQEIGCGKVFKYASKLRQ 183
           KCP+ENCN EF++Q NMKRH +E+H + +T+T S    KQ++C EIGCGKVF+YAS+L++
Sbjct: 121 KCPVENCNSEFSLQSNMKRHTEEIHDDSSTTTSSDKSHKQHMCPEIGCGKVFRYASQLQK 180

Query: 184 HEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVR 243
           HEDSHVNL+SV+  C EPGC+K+FTN QCL+AH++S HQY+ C+ICG+ QLKKNIKRH+R
Sbjct: 181 HEDSHVNLESVDMVCLEPGCLKHFTNVQCLQAHVKSSHQYMTCDICGTKQLKKNIKRHLR 240

Query: 244 THEAR-DLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVR 302
           +HEA    SE  +C+FKGC  +FS  SNL +H KAVH+ +KPFAC F  CGMRFA+KHVR
Sbjct: 241 SHEAEGSSSETFQCEFKGCSCTFSRKSNLDKHKKAVHFNVKPFACGFTDCGMRFAYKHVR 300

Query: 303 DNHEKSGHHVYSSGDFVESDERFRSRERGGRKRKCPTVEMLIRKRVSLPSPTQSCNLYED 362
           DNHEK+  HV++ GDF E+DE FRSR RGGRKR CPTVEMLIRKRV+ PS  +     +D
Sbjct: 301 DNHEKTAKHVFTLGDFEEADEEFRSRPRGGRKRTCPTVEMLIRKRVTPPSQLEHWLFMQD 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741741|emb|CBI32873.3| unnamed protein product [Vitis vinifera]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/369 (63%), Positives = 280/369 (75%), Gaps = 23/369 (6%)

Query: 10  EKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEE--RVDGDGETKGVQCN 67
           E+G  + P  RDVRRY+CDYCG+CRSKK+LI +H+ SHHKE+ E  +V  + E +G + N
Sbjct: 3   ERGERKEPIFRDVRRYFCDYCGLCRSKKALIRAHMLSHHKEEMEGQKVHNNEEKEGEKSN 62

Query: 68  TCEECGASFKKPAYLKQHMLSHLLE--------------------RPFRCSVDDCHASYR 107
            CEECGASFKKPAYLKQHM SH LE                    RPF C VDDC +SYR
Sbjct: 63  ACEECGASFKKPAYLKQHMQSHSLEALNFFGSSIKRPQSRTTCFERPFTCPVDDCQSSYR 122

Query: 108 RKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQ 167
           RKDHLTRHLL+HQGKLF CP+ENC R F  QGNMKRH+KE H E +   D G  KQY+C 
Sbjct: 123 RKDHLTRHLLQHQGKLFTCPVENCKRRFAFQGNMKRHIKEFHDEESPPNDVGS-KQYVCP 181

Query: 168 EIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCE 227
           E+GCGKVFK+ASKL++HEDSH  LDSVEA C EP C+K+FTN+QCL+AH++SCHQ+I CE
Sbjct: 182 ELGCGKVFKFASKLQKHEDSHAKLDSVEAVCLEPECLKHFTNEQCLKAHLQSCHQHIICE 241

Query: 228 ICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFAC 287
           ICG+ QLKKNIKRH+RTHE+   SER+KC FKGCL +FST SNL QHVKAVH +++PF C
Sbjct: 242 ICGTKQLKKNIKRHLRTHESVCSSERVKCHFKGCLHTFSTKSNLDQHVKAVHLKLRPFVC 301

Query: 288 SFFGCGMRFAFKHVRDNHEKSGHHVYSSGDFVESDERFRSRERGGRKRKCPTVEMLIRKR 347
              GCGMRF FKHVRDNHEK+G HVY+ GDF E DE+FR R +GGRKRK P +E L+RKR
Sbjct: 302 GIPGCGMRFPFKHVRDNHEKTGCHVYTHGDFEELDEQFRLRPKGGRKRKSPPIEALLRKR 361

Query: 348 VSLPSPTQS 356
           V+ PS + S
Sbjct: 362 VTPPSQSDS 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499396|ref|XP_003518527.1| PREDICTED: zinc finger protein 845-like [Glycine max]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/354 (64%), Positives = 282/354 (79%), Gaps = 4/354 (1%)

Query: 13  LEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEE--RVDGDGETKGVQCNTCE 70
           +EERPK +D+RRYYC+YCGICRSKK+LI SHI  HHKE+ E  R   D E +  + NTCE
Sbjct: 16  IEERPKYKDIRRYYCEYCGICRSKKTLITSHINLHHKEEYEKARAKRDPEAEASKSNTCE 75

Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIEN 130
           ECGA+FKK AYL QHM SH LERPF C+VDDC ASYRRKDHLT+HLL+H+GK+FKCP+EN
Sbjct: 76  ECGATFKKHAYLLQHMQSHSLERPFVCAVDDCQASYRRKDHLTQHLLQHEGKIFKCPVEN 135

Query: 131 CNREFTIQGNMKRHVKELHHEGTTSTDSG-DQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
           CN EF++Q NMKRH +E+H + +T+T S    KQ++C EIGCGKVF+YAS+L++HEDSHV
Sbjct: 136 CNSEFSLQSNMKRHTEEIHDDSSTTTSSDKSHKQHMCPEIGCGKVFRYASQLQKHEDSHV 195

Query: 190 NLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEAR- 248
           NL+SV+  C EPGC+K+F N QCL+AH++S HQY+ C+ICG+ QLKKNIKRH+R+HEA  
Sbjct: 196 NLESVDMVCLEPGCLKHFPNVQCLQAHVKSSHQYMTCDICGTKQLKKNIKRHLRSHEAEG 255

Query: 249 DLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKS 308
             SE  +C+FKGC  +FS  SNL +H KAVH  +KPFAC F  CGMRFA+KHVRDNHEK+
Sbjct: 256 SSSETFQCEFKGCSCTFSRKSNLDKHKKAVHLNVKPFACGFPDCGMRFAYKHVRDNHEKT 315

Query: 309 GHHVYSSGDFVESDERFRSRERGGRKRKCPTVEMLIRKRVSLPSPTQSCNLYED 362
             HV++ GDF E+DE FRSR RGGRKR CPTVE+LIRKRV+ PS  +     +D
Sbjct: 316 AKHVFTLGDFEEADEEFRSRPRGGRKRTCPTVEVLIRKRVTPPSQLEHWLFMQD 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535825|ref|NP_001234471.1| transcription factor IIIA [Solanum lycopersicum] gi|115279797|gb|ABI85391.1| transcription factor IIIA [Solanum lycopersicum] gi|115279800|gb|ABI85393.1| transcription factor IIIA [Solanum lycopersicum]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/335 (64%), Positives = 265/335 (79%), Gaps = 3/335 (0%)

Query: 20  RDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDG--ETKGVQCNTCEECGASFK 77
           RD+RRYYC++CG+CRSKKSLI SHI SHH++  E +  D     KG + N CEECGA+F+
Sbjct: 14  RDIRRYYCEFCGLCRSKKSLISSHIQSHHQDVIESLKDDATENAKGSKMNICEECGATFQ 73

Query: 78  KPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTI 137
           KPA+LKQH+ SH LERPF C +DDC +SYRRKDHL+RHLL HQGKLF+CP++ C   F+ 
Sbjct: 74  KPAHLKQHLQSHSLERPFVCHIDDCQSSYRRKDHLSRHLLLHQGKLFECPVDGCKSTFSF 133

Query: 138 QGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAF 197
           QGNM RHVKE+H +   S +    K+Y+C E GCGKVFKYASKLR+HEDSHV L++VEA 
Sbjct: 134 QGNMTRHVKEMH-DQPASAEVDLPKEYVCSEAGCGKVFKYASKLRKHEDSHVKLETVEAM 192

Query: 198 CSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQ 257
           C EPGCMK+FTN++CL+ HI SCHQ+I CEICG+ QLKKNIKRH+RTHE   +SERIKC+
Sbjct: 193 CLEPGCMKHFTNEKCLKEHIESCHQHIDCEICGTKQLKKNIKRHLRTHEEGPISERIKCE 252

Query: 258 FKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSGD 317
           F+ CL +FS+ SNL QH+KAVH   KPF+CS  GCGM+FAFKHVRD HE+SG HVY+ GD
Sbjct: 253 FQDCLHTFSSRSNLAQHIKAVHVGSKPFSCSISGCGMKFAFKHVRDKHEQSGCHVYTPGD 312

Query: 318 FVESDERFRSRERGGRKRKCPTVEMLIRKRVSLPS 352
           F E DE+F SR RGGRKR+    E ++RKR++ PS
Sbjct: 313 FEEVDEQFLSRPRGGRKREPTLFESIMRKRITPPS 347

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515205|ref|XP_003627891.1| Zinc finger protein [Medicago truncatula] gi|355521913|gb|AET02367.1| Zinc finger protein [Medicago truncatula]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/391 (54%), Positives = 267/391 (68%), Gaps = 40/391 (10%)

Query: 5   SDMEEEKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEER--VDGDGETK 62
           ++M++     ERP  RD+RRYYC YCGICRSKK+LI SHI SHH+ + E+  +  D E  
Sbjct: 19  TEMDDSFESNERPIFRDIRRYYCQYCGICRSKKTLITSHINSHHQVEMEKAGLGRDQEAH 78

Query: 63  GVQCNTCEECGASFKKPAYLKQHMLSHLLE------------------------------ 92
             + NTC EC AS KKPAYL QH++ H +                               
Sbjct: 79  DTKLNTCMECDASLKKPAYLLQHIVKHWISDSKMCEAAWFGLMDQYQVGKPLEKLHQGCL 138

Query: 93  -------RPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHV 145
                  RP+ C++DDC ASYRRKDHL RHLL+H G+ FKCPIENC+R+F+++GNM RHV
Sbjct: 139 SHAPFKTRPYICTIDDCQASYRRKDHLNRHLLQHDGEKFKCPIENCSRDFSLKGNMTRHV 198

Query: 146 KELHH-EGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCM 204
           KE H+ + +TS D   QKQ++C EIGCGK FK+ASKL +H+DSHV L+S+EA C  PGCM
Sbjct: 199 KEFHNKDSSTSIDVKIQKQHVCSEIGCGKAFKFASKLEKHKDSHVKLESIEAVCLYPGCM 258

Query: 205 KYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLS 264
             FTN QCL AH +SCH+Y+ CE CG  QL+KNIKRH+R HE    SE   C +K C  +
Sbjct: 259 TSFTNLQCLRAHTKSCHKYVNCETCGKKQLRKNIKRHLRKHETGSSSEVFHCDYKDCSST 318

Query: 265 FSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSGDFVESDER 324
           FS+ SNL +HVKAVH + KPF C F  CGMRFA+K+VRDNHEKSG HV++ GDF E+DE+
Sbjct: 319 FSSKSNLCKHVKAVHLQDKPFICGFPDCGMRFAYKYVRDNHEKSGSHVFTLGDFKETDEQ 378

Query: 325 FRSRERGGRKRKCPTVEMLIRKRVSLPSPTQ 355
           FRSR RGGRKRKCPTVEML+RK    P+ T+
Sbjct: 379 FRSRNRGGRKRKCPTVEMLVRKESCSPNSTR 409

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839055|ref|XP_002887409.1| hypothetical protein ARALYDRAFT_476336 [Arabidopsis lyrata subsp. lyrata] gi|297333250|gb|EFH63668.1| hypothetical protein ARALYDRAFT_476336 [Arabidopsis lyrata subsp. lyrata]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/380 (57%), Positives = 263/380 (69%), Gaps = 36/380 (9%)

Query: 8   EEEKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQC- 66
           EE K   +    +D+R Y C YCGI RSKK LI SHI SHH+ + E    D + +  +  
Sbjct: 3   EEAKKDVKTSAKKDIRNYLCQYCGISRSKKYLITSHIQSHHQMELEEERDDEDCEVEEEF 62

Query: 67  ---NTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKL 123
              +TC+ECGA FKKPA+LKQHM SH LERPF C VDDC  SYRRKDHL RHLL H+GKL
Sbjct: 63  SSKHTCQECGAEFKKPAHLKQHMQSHSLERPFACYVDDCATSYRRKDHLNRHLLTHKGKL 122

Query: 124 FKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDS-----------------------GD 160
           FKCP ENC  EF++QGN+ RHVK+ H  G +  D+                       GD
Sbjct: 123 FKCPKENCKSEFSVQGNVSRHVKKCHSSGDSDKDTTGKGDSDKENAGNGDSGKDNTGNGD 182

Query: 161 ---------QKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQ 211
                    QK+ +C+EIGCGK FKY S+L++H+DSHV LDSVEAFCSEPGCMKYFTN++
Sbjct: 183 SQPSECSTGQKKLVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEE 242

Query: 212 CLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNL 271
           CL+AHIRSCHQ+I CEICGS  LKKNIKRH+RTH+        KC+ +GC  +FS  SNL
Sbjct: 243 CLKAHIRSCHQHINCEICGSKHLKKNIKRHLRTHDEDSSPGEFKCEVEGCSSTFSKASNL 302

Query: 272 RQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSGDFVESDERFRSRERG 331
           ++HVKAVH +++PF C F GCGMRFA+KHVR+NHE SG HVY+ GDFVE+DE F SR RG
Sbjct: 303 QKHVKAVHEDLRPFVCGFPGCGMRFAYKHVRNNHENSGCHVYTCGDFVETDEDFTSRPRG 362

Query: 332 GRKRKCPTVEMLIRKRVSLP 351
           G KRK  T EML+RKRV  P
Sbjct: 363 GLKRKQVTAEMLVRKRVMPP 382

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456389|ref|XP_003598475.1| Zinc finger protein [Medicago truncatula] gi|355487523|gb|AES68726.1| Zinc finger protein [Medicago truncatula]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/407 (52%), Positives = 272/407 (66%), Gaps = 65/407 (15%)

Query: 7   MEEEKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGET--KGV 64
           MEE    +E PK RD+RRYYC +C               ++ + ++ RV+ + E+   G+
Sbjct: 1   MEESIQSDEIPKFRDIRRYYCQFC--------------VNYEEMEKARVETEPESLEGGL 46

Query: 65  QCNTCEECGASFKKPAYLKQHMLSHLLE-------------------------------- 92
           + NTCEECGASFKK AYL QHM SH LE                                
Sbjct: 47  KANTCEECGASFKKHAYLLQHMQSHSLEMISLDPRQRTPICARHYAWPWWISIRLGDLLR 106

Query: 93  ---------------RPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTI 137
                          RPF CS++DC ASYRRKDHL RHLL+HQGK FKCPIENC   F++
Sbjct: 107 SFIKDMPRSRSIQNERPFVCSLEDCKASYRRKDHLNRHLLQHQGKTFKCPIENCKSGFSL 166

Query: 138 QGNMKRHVKELHHEGTTSTDSG-DQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEA 196
           Q N+KRHV+E+H E +T   SG +QKQ++C EIGCGKVF+YAS+L++HEDSHV L+++E 
Sbjct: 167 QSNLKRHVEEMHDENSTPPCSGENQKQFVCPEIGCGKVFRYASQLQKHEDSHVRLETIEV 226

Query: 197 FCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKC 256
            C EPGCMK+FTN +CL+AH++SCHQY+ C+ CG+ QLKKN+KRH+RTHEA + SE  KC
Sbjct: 227 VCLEPGCMKFFTNSECLKAHVKSCHQYVTCDTCGTKQLKKNMKRHLRTHEASNSSEAFKC 286

Query: 257 QFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSG 316
           +F+GC  +FST SNL +H KAVH+++KPF C F  CGMRFA+KHVRDNHEK+  H ++ G
Sbjct: 287 EFEGCDSTFSTKSNLHKHEKAVHFQVKPFVCGFPNCGMRFAYKHVRDNHEKTAKHAFALG 346

Query: 317 DFVESDERFRSRERGGRKRKC-PTVEMLIRKRVSLPSPTQSCNLYED 362
           DF E+DE FRSR RGG KRKC PTVEML+RKRV  PS  ++    +D
Sbjct: 347 DFEEADEEFRSRPRGGVKRKCPPTVEMLVRKRVIPPSQLENLLFVQD 393

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
TAIR|locus:2030362	412	TFIIIA "transcription factor I	0.535	0.470	0.618	5.8e-66
UNIPROTKB|Q92664	365	GTF3A "Transcription factor II	0.593	0.589	0.311	1.9e-28
UNIPROTKB|F1P2M2	335	GTF3A "Uncharacterized protein	0.616	0.665	0.315	3.9e-28
MGI|MGI:1913846	364	Gtf3a "general transcription f	0.687	0.684	0.294	1.3e-27
UNIPROTKB|F1RTJ7	381	GTF3A "Uncharacterized protein	0.604	0.574	0.293	2.8e-27
RGD|619746	363	Gtf3a "general transcription f	0.593	0.592	0.307	4.5e-27
ZFIN|ZDB-GENE-041006-1	367	gtf3aa "general transcription	0.602	0.594	0.311	4.5e-27
UNIPROTKB|F1PWN5	363	GTF3A "Uncharacterized protein	0.596	0.595	0.307	8.4e-26
ZFIN|ZDB-GENE-030131-6124	380	si:dkey-208k4.2 "si:dkey-208k4	0.646	0.615	0.309	3.6e-25
UNIPROTKB|F1MUY9	357	GTF3A "Uncharacterized protein	0.604	0.613	0.319	7.6e-25

TAIR|locus:2030362 TFIIIA "transcription factor IIIA" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 120/194 (61%), Positives = 147/194 (75%)

Query:   158 SGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHI 217
             S  QKQ +C+EIGCGK FKY S+L++H+DSHV LDSVEAFCSEPGCMKYFTN++CL++HI
Sbjct:   209 STGQKQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHI 268

Query:   218 RSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKA 277
             RSCHQ+I CEICGS  LKKNIKRH+RTH+       IKC+ +GC  +FS  SNL++H+KA
Sbjct:   269 RSCHQHINCEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKA 328

Query:   278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSGDFVESDXXXXXXXXXXXXXXC 337
             VH +I+PF C F GCGMRFA+KHVR+ HE SG+HVY+ GDFVE+D               
Sbjct:   329 VHDDIRPFVCGFPGCGMRFAYKHVRNKHENSGYHVYTCGDFVETDEDFTSRPRGGLKRKQ 388

Query:   338 PTVEMLIRKRVSLP 351
              T EML+RKRV  P
Sbjct:   389 VTAEMLVRKRVMPP 402

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008097 "5S rRNA binding" evidence=IDA

GO:0080084 "5S rDNA binding" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

UNIPROTKB|Q92664 GTF3A "Transcription factor IIIA" [Homo sapiens (taxid:9606)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 76/244 (31%), Positives = 122/244 (50%)

Query:    70 EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLR---HQGKLFKC 126
             E CG +F +  +L +H+L+H  E+PF C+ + C   +  K +L +H  R   +Q K + C
Sbjct:    75 EGCGKAFIRDYHLSRHILTHTGEKPFVCAANGCDQKFNTKSNLKKHFERKHENQQKQYIC 134

Query:   127 PIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHED 186
               E+C + F     +K H  +  H         ++  + C + GCGK F   SKL++H  
Sbjct:   135 SFEDCKKTFKKHQQLKIH--QCQHT--------NEPLFKCTQEGCGKHFASPSKLKRHAK 184

Query:   187 SHVNLDSVEAFCSEPGCMKYFTNKQCLEA--HIRSCH-QYIPCEICGSMQLKKN-IKRHV 242
             +H      E +  + GC   F  K   E   H+R  H + I CE+C     +K+ +K+H+
Sbjct:   185 AH------EGYVCQKGCS--FVAKTWTELLKHVRETHKEEILCEVCRKTFKRKDYLKQHM 236

Query:   243 RTHEA-RDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHV 301
             +TH   RD+    +C  +GC  +++T  NL+ H+ + H E +PF C   GCG  FA K  
Sbjct:   237 KTHAPERDVC---RCPREGCGRTYTTVFNLQSHILSFHEESRPFVCEHAGCGKTFAMKQS 293

Query:   302 RDNH 305
                H
Sbjct:   294 LTRH 297

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0009303 "rRNA transcription" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006383 "transcription from RNA polymerase III promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1P2M2 GTF3A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 78/247 (31%), Positives = 123/247 (49%)

Query:    70 EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLR-H--QGKLFKC 126
             E CG SF +  +  +H L+H  ERPF C+ + C+  +  K +L +H+ R H  Q KL+ C
Sbjct:    47 EGCGKSFTRDFHRTRHFLTHSGERPFECTAEGCNQKFGTKSNLKKHVQRKHENQQKLYSC 106

Query:   127 PIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHED 186
               E C + F     +K H+ +  H         ++  + C + GCGK F   + L++H+ 
Sbjct:   107 NFEGCGKSFKKHQQLKVHLCQ--HT--------NEPPFKCNQEGCGKNFSTPNSLKRHKK 156

Query:   187 SHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCH-QYIPCEICGSMQLKKN-IKRHVRT 244
             +H      +  CS  G  K +T    L  H +  H + I C  C     +K+ +K+H +T
Sbjct:   157 THEGYACKKENCSYIG--KTWTE---LLKHNKESHTEPIVCTECSKTFKRKDYLKQHKKT 211

Query:   245 HEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDN 304
             H A    E  +C  +GC  +++T  NL+ H+ + H E+KPF+C   GCG  FA K     
Sbjct:   212 HAAE--REVCRCPREGCDRTYTTLFNLQSHILSFHEELKPFSCDHPGCGKVFAMKQSLAR 269

Query:   305 HEKSGHH 311
             H  + HH
Sbjct:   270 H--AVHH 274

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1913846 Gtf3a "general transcription factor III A" [Mus musculus (taxid:10090)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 86/292 (29%), Positives = 137/292 (46%)

Query:    24 RYYCDY--CGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAY 81
             R+ C +  C    +K   + +H+  H           GE   V C+  E CG +F +  +
Sbjct:    37 RFICSFPDCSASYNKAWKLDAHLCKH----------TGERPFV-CDY-EGCGKAFIRDYH 84

Query:    82 LKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG---KLFKCPIENCNREFTIQ 138
             L +H+L H  E+PF C+ D C+  +  K +L +H+ R  G   K + C  E C + F   
Sbjct:    85 LSRHVLIHTGEKPFVCADDGCNQKFNTKSNLKKHIERKHGNPQKQYVCSYEGCKKAFKKH 144

Query:   139 GNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFC 198
               ++ H  +  H   TS     +  + C   GCGK F   S+L++H   H      E + 
Sbjct:   145 QQLRTH--QCQH---TS-----EPLFRCTHEGCGKHFASPSRLKRHGKVH------EGYL 188

Query:   199 SEPGCMKYFTNKQCLEA--HIRSCHQY-IPCEICGSMQLKKN-IKRHVRTHEA-RDLSER 253
              + GC   F  K   E   H+R  H+  I C +C  M  +++ +K+H++TH   RD+   
Sbjct:   189 CQKGCS--FMGKTWTELLKHMREAHKEDITCNVCQRMFKRRDYLKQHMKTHAPERDV--- 243

Query:   254 IKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNH 305
              +C  +GC  +++T  NL+ H+ + H E +PF C   GCG  FA K     H
Sbjct:   244 YRCPRQGCGRTYTTVFNLQSHILSFHEEKRPFVCEHAGCGKTFAMKQSLMRH 295

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISO;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RTJ7 GTF3A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 71/242 (29%), Positives = 118/242 (48%)

Query:    70 EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLR---HQGKLFKC 126
             E CG +F +  +L +H L+H  E+PF C+   C   +  K +L +H  R   +Q K + C
Sbjct:    73 EGCGKAFVRDYHLSRHALTHTGEKPFVCAASGCDQKFNTKSNLKKHFERKHENQQKQYVC 132

Query:   127 PIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHED 186
               E C + F     +K H  +  H         ++  + C   GCGK F   S L++H  
Sbjct:   133 SFEGCKKTFKKHQQLKTH--QCQHT--------NEPLFKCAHDGCGKHFASPSSLKRHGK 182

Query:   187 SHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCH-QYIPCEICG-SMQLKKNIKRHVRT 244
              H   +++   C +       T  + L+ H+R  H + +PC +CG + + K ++++H +T
Sbjct:   183 VH---EAIGYICQKECSFVAKTWTELLK-HVRETHKEALPCGVCGRTFKRKDHLRQHAKT 238

Query:   245 HEA-RDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRD 303
             H   RD+    +C  +GC  +++T  NL+ H+ + H E +PF C   GCG  FA K    
Sbjct:   239 HAPERDVC---RCPREGCGRTYTTVFNLQSHILSFHEEQRPFVCPQAGCGRAFAMKQSLS 295

Query:   304 NH 305
              H
Sbjct:   296 RH 297

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|619746 Gtf3a "general transcription factor III A" [Rattus norvegicus (taxid:10116)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 75/244 (30%), Positives = 121/244 (49%)

Query:    70 EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLR-HQG--KLFKC 126
             E CG +F +  +L +H+L H  E+PF C+ + C+  +  K +L +H+ R H+   K + C
Sbjct:    73 EGCGKAFIRDYHLSRHILIHTGEKPFVCADNGCNQKFSTKSNLKKHIERKHENPQKQYVC 132

Query:   127 PIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHED 186
               E C + F      K+H ++L    T      ++  + C   GCGK F   S+L++H  
Sbjct:   133 NFEGCKKAF------KKH-QQLR---THQCQHTNEPLFRCTHEGCGKHFASPSRLKRHGK 182

Query:   187 SHVNLDSVEAFCSEPGCMKYFTNKQCLEA--HIRSCH-QYIPCEICGSM-QLKKNIKRHV 242
              H      E +  + GC   F  K   E   H R  H + + C +C  M + K ++K+H+
Sbjct:   183 VH------EGYLCQKGCS--FVGKTWTELLKHTREAHKEEVTCTVCQKMFKRKDHLKQHM 234

Query:   243 RTHEA-RDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHV 301
             +TH   RD+    +C  +GC  +++T  NL+ H+ + H E +PF C   GCG  FA K  
Sbjct:   235 KTHAPERDV---YRCPREGCARTYTTVFNLQSHILSFHEEKRPFVCEHAGCGKTFAMKQS 291

Query:   302 RDNH 305
                H
Sbjct:   292 LMRH 295

GO:0003677 "DNA binding" evidence=ISO;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-041006-1 gtf3aa "general transcription factor IIIAa" [Danio rerio (taxid:7955)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 77/247 (31%), Positives = 121/247 (48%)

Query:    71 ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIE 129
             +C A + +   L+ H+  H  ERP++C    C  S+  K HL+RH+L H G K ++C  +
Sbjct:    23 DCHAYYNREWKLQAHLCKHTGERPYKCKYKKCSKSFCTKHHLSRHVLTHTGEKPYRCMED 82

Query:   130 NCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
              C   FT   N+++H+  +H + T        KQYIC   GCGK FK  ++L+ HE +H 
Sbjct:    83 GCKEGFTTNSNLQKHISRIHRQET--------KQYICTFEGCGKAFKKNNQLKTHECTHT 134

Query:   190 NLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKN---IKRHVRTHE 246
              L  +   C++ GC + F+ +  L+ H    H+   CE  G   + KN   +  H + H 
Sbjct:   135 QL--LPFLCTQEGCGRRFSQRGKLKRH-EKVHKGYSCETEGCSFVAKNWTEMTNHKKVHI 191

Query:   247 ARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIK-PFACSFFGCGMRF--AFK---H 300
              R     ++C    C  +F  +  L+QH + VH E +  F C   GC   +  AF    H
Sbjct:   192 VR-----VQCD--QCQKTFRDSWFLKQH-QHVHSEERLVFHCPRDGCTRSYTTAFNLQSH 243

Query:   301 VRDNHEK 307
             +   HE+
Sbjct:   244 ILSFHEQ 250

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1PWN5 GTF3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 75/244 (30%), Positives = 115/244 (47%)

Query:    70 EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLR-H--QGKLFKC 126
             E CG +F +  +L +H+L H  E+PF C+   C   +  K +L +H  R H  Q K + C
Sbjct:    79 EGCGKAFVRDYHLSRHILIHTGEKPFVCTASGCDQKFNTKSNLNKHFERKHENQQKQYVC 138

Query:   127 PIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHED 186
               E C   F     ++ H  +  H   TS     +  + C   GCGK F   S+L++H  
Sbjct:   139 TFEGCKEAFKKHQQLRIH--QCQH---TS-----EPLFKCAHEGCGKHFTSPSRLKRHGK 188

Query:   187 SHVNLDSVEAFCSEPGCMKYFTNKQCLEA--HIRSCHQY-IPCEICGSMQLKKN-IKRHV 242
              H         C +  C   F  K   E   H++  H+  I CE+C     +K+ +K+H+
Sbjct:   189 VHEGY-----MCQKDKCS--FVAKTWTELLKHVKETHKEDIKCEVCQKTFKRKDYLKQHM 241

Query:   243 RTHEA-RDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHV 301
             +TH   RD+    +C  +GC  +++T  NL+ H+ + H E +PF C   GCG  FA K  
Sbjct:   242 KTHAPERDVC---RCPREGCSRTYTTVFNLQSHILSFHEERRPFTCEQEGCGKTFAMKQS 298

Query:   302 RDNH 305
                H
Sbjct:   299 LTRH 302

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-030131-6124 si:dkey-208k4.2 "si:dkey-208k4.2" [Danio rerio (taxid:7955)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 86/278 (30%), Positives = 122/278 (43%)

Query:    64 VQCNTC--EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG 121
             VQ   C   ECGA+F +   L++H   H   RP++C V  C  S+ RK HL RH   H G
Sbjct:    65 VQLFNCVYAECGATFTRQWRLQEHETVHTGVRPYKCGVVGCGRSFTRKSHLNRHTSAHSG 124

Query:   122 -KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASK 180
              K FKC I  C ++F     +KRHV+ +H E        +++ + C E  C K F+    
Sbjct:   125 VKHFKCNITACGKKFQAADKLKRHVRYVHSE--------NEEYFKCTEPQCSKAFRKRRA 176

Query:   181 LRQHEDSHVNLDSVEAF-CSEPGCMKYFTNKQCLEAHIRSCHQY----IPCEIC----GS 231
             L+ H  +H       +F CS+  C K F +     AH R    Y      C I     GS
Sbjct:   177 LKLHLATH----GTSSFRCSKNNCGKKFDSHIARNAHDRRHLGYRCLRTECPITVHTWGS 232

Query:   232 --------------MQLKKNIKRH--VRTHEARDLSER--IKCQFKGCLLSFSTNSNLRQ 273
                           M  KK  ++   +R H+     ++  + C  +GC   FST  NL+ 
Sbjct:   233 LIKHMASHPVSFSCMVCKKAFRKRDALRRHKRTHALQKPVLLCPSQGCQAYFSTTFNLQH 292

Query:   274 HVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHH 311
             H++ VH ++    CSF GC   FA +     H    HH
Sbjct:   293 HIRKVHLQLLSHCCSFPGCSKTFAMRESLVRHML--HH 328

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MUY9 GTF3A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 78/244 (31%), Positives = 113/244 (46%)

Query:    72 CGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIEN 130
             C A++ K   L  H+  H  ERPF C  + C  ++ R  HL+RH L H G K F C    
Sbjct:    45 CSAAYNKAWKLDAHLCRHTGERPFVCDHEGCGKAFVRDYHLSRHALIHTGEKPFVCTASG 104

Query:   131 CNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVN 190
             C ++F  + N+K+H  E  HE         QKQY C   GC K FK   +L+ H+  H N
Sbjct:   105 CEQKFNTKSNLKKHF-ERKHEN-------QQKQYTCSFEGCEKTFKKHQQLKTHQCQHTN 156

Query:   191 LDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSM-QLKKNIKRHVR-THEAR 248
                 +  C+  GC K+F +   L+ H +    YI  + C  + +    + +H+R TH+  
Sbjct:   157 EPLFK--CAHEGCGKHFASPSSLKRHGKVHEGYICQKQCSFVAKTWTELLKHMRETHK-- 212

Query:   249 DLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRF--AFK---HVRD 303
                E I+C    C  +F     LRQH++    E     C   GCG  +  AF    H+  
Sbjct:   213 ---EDIRCGV--CQKTFKRKDFLRQHMRMHAPERDVCRCPRAGCGRTYTTAFNLQSHILS 267

Query:   304 NHEK 307
              HE+
Sbjct:   268 FHEQ 271

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	362
COG5189	423	COG5189, SFP1, Putative transcriptional repressor	2e-05

>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 11/91 (12%)

Query: 103 HASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTD----- 157
           H   R  D  +R L    GK +KCP+E CN+++  Q  +K H+   H       +     
Sbjct: 329 HGGERNIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEK 388

Query: 158 ----SGDQKQYICQEIGCGKVFKYASKLRQH 184
               S   K Y C+   C K +K  + L+ H
Sbjct: 389 MNIFSAKDKPYRCEV--CDKRYKNLNGLKYH 417

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
KOG3608	467	consensus Zn finger proteins [General function pre	99.95
KOG3608	467	consensus Zn finger proteins [General function pre	99.95
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.94
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.93
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.92
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.9
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.89
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.8
KOG3576	267	consensus Ovo and related transcription factors [T	99.64
KOG3576	267	consensus Ovo and related transcription factors [T	99.62
PLN03086	567	PRLI-interacting factor K; Provisional	99.29
PLN03086	567	PRLI-interacting factor K; Provisional	98.95
PHA00733	128	hypothetical protein	98.89
PHA00733	128	hypothetical protein	98.87
KOG3993	500	consensus Transcription factor (contains Zn finger	98.8
KOG3993	500	consensus Transcription factor (contains Zn finger	98.75
PHA02768	55	hypothetical protein; Provisional	98.69
PHA02768	55	hypothetical protein; Provisional	98.68
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.53
PHA00732	79	hypothetical protein	98.34
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.28
PHA00616	44	hypothetical protein	98.28
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.23
PHA00732	79	hypothetical protein	98.05
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.04
PHA00616	44	hypothetical protein	97.97
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.88
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.8
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.7
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.67
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.61
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.56
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.52
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.47
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.46
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.35
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.28
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.88
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.8
smart00355	26	ZnF_C2H2 zinc finger.	96.75
smart00355	26	ZnF_C2H2 zinc finger.	96.68
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.61
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.6
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.53
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.48
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.47
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	95.99
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.86
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.83
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.68
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	95.36
COG5048	467	FOG: Zn-finger [General function prediction only]	95.31
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	95.19
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.04
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	94.9
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.75
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	94.69
PRK04860	160	hypothetical protein; Provisional	94.65
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.43
COG5048	467	FOG: Zn-finger [General function prediction only]	94.03
PRK04860	160	hypothetical protein; Provisional	93.92
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.0
KOG1146	1406	consensus Homeobox protein [General function predi	92.59
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.34
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	91.32
KOG2893	341	consensus Zn finger protein [General function pred	90.0
COG4049	65	Uncharacterized protein containing archaeal-type C	88.71
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	88.41
KOG1146	1406	consensus Homeobox protein [General function predi	88.26
COG4049	65	Uncharacterized protein containing archaeal-type C	87.2
KOG2893	341	consensus Zn finger protein [General function pred	86.64
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	85.54
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	84.71
KOG2186	276	consensus Cell growth-regulating nucleolar protein	82.0
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	81.4
KOG2186	276	consensus Cell growth-regulating nucleolar protein	80.59

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.95  E-value=4.3e-28  Score=202.65  Aligned_cols=265  Identities=23%  Similarity=0.450  Sum_probs=219.8

Q ss_pred             cccccc--ccccccc-hHHHHHHHHhhccccc---------c---ccCC--------CCCcCCCcccccc--ccccccCC
Q 048459           24 RYYCDY--CGICRSK-KSLILSHIASHHKEDE---------E---RVDG--------DGETKGVQCNTCE--ECGASFKK   78 (362)
Q Consensus        24 ~~~C~~--C~~~f~~-~~~l~~H~~~h~~~~~---------~---~~~~--------~~~~~~~~~~~C~--~C~~~f~~   78 (362)
                      .+.|.+  |++...+ ...|.+|+-.|--...         .   ++..        .....-...|.|.  .|+..|.+
T Consensus        69 e~qC~w~~C~f~~~~~s~~l~RHvy~H~y~~~l~q~G~~al~~~~dig~c~~~f~~~~~ip~~g~~f~C~WedCe~~F~s  148 (467)
T KOG3608|consen   69 EHQCTWNSCDFRTENSSADLIRHVYFHCYHTKLKQQGKLALDLHPDIGACTAPFRLMEKIPALGQNFRCGWEDCEREFVS  148 (467)
T ss_pred             ceeEEeccCCccccchHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCcCcccCCcchhhccccchhhhccChhhcCCcccC
Confidence            678876  8888777 5889999876642110         0   0000        0001123335664  69999999


Q ss_pred             hhHHHHHHHhccC------------CCC-eecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHH
Q 048459           79 PAYLKQHMLSHLL------------ERP-FRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRH  144 (362)
Q Consensus        79 ~~~l~~H~~~h~~------------~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H  144 (362)
                      ...+..|...|..            ++| +.|.|..|.+.|.+++.|++|++.|.+ +...|+.  |+..|+++..|..|
T Consensus       149 ~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~--Cg~~F~~~tkl~DH  226 (467)
T KOG3608|consen  149 IVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPH--CGELFRTKTKLFDH  226 (467)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecch--HHHHhccccHHHHH
Confidence            9999999887742            223 789999999999999999999999999 8999998  99999999999999


Q ss_pred             HHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhhhCC--
Q 048459          145 VKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQ--  222 (362)
Q Consensus       145 ~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~--  222 (362)
                      ++.....        ...+|.|..  |.+.|.+...|..|+..|-.      .|+|+.|+.+....++|.+|++..|.  
T Consensus       227 ~rRqt~l--------~~n~fqC~~--C~KrFaTeklL~~Hv~rHvn------~ykCplCdmtc~~~ssL~~H~r~rHs~d  290 (467)
T KOG3608|consen  227 LRRQTEL--------NTNSFQCAQ--CFKRFATEKLLKSHVVRHVN------CYKCPLCDMTCSSASSLTTHIRYRHSKD  290 (467)
T ss_pred             HHhhhhh--------cCCchHHHH--HHHHHhHHHHHHHHHHHhhh------cccccccccCCCChHHHHHHHHhhhccC
Confidence            9865432        446899999  99999999999999999853      47899999999999999999999884  


Q ss_pred             -CcCCCCCCccc-chhHHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCc--ccccCCCCCCceecc
Q 048459          223 -YIPCEICGSMQ-LKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIK--PFACSFFGCGMRFAF  298 (362)
Q Consensus       223 -~~~C~~C~~~~-~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~--~~~C~~~~C~~~f~~  298 (362)
                       +|+|+.|.+.+ +.++|..|+.+|+.    ..|.|..+.|..+|.+...|.+|++.+|.|..  +|.|-.  |++.|++
T Consensus       291 kpfKCd~Cd~~c~~esdL~kH~~~HS~----~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~--Cdr~ft~  364 (467)
T KOG3608|consen  291 KPFKCDECDTRCVRESDLAKHVQVHSK----TVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHC--CDRFFTS  364 (467)
T ss_pred             CCccccchhhhhccHHHHHHHHHhccc----cceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeec--chhhhcc
Confidence             89999999876 89999999999984    46999888899999999999999998886654  599999  9999999


Q ss_pred             chhhhhhhhccCcc
Q 048459          299 KHVRDNHEKSGHHV  312 (362)
Q Consensus       299 ~~~l~~H~~~~h~~  312 (362)
                      -.+|..|+...|+.
T Consensus       365 G~~L~~HL~kkH~f  378 (467)
T KOG3608|consen  365 GKSLSAHLMKKHGF  378 (467)
T ss_pred             chhHHHHHHHhhcc
Confidence            99999999877754

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.95  E-value=5.4e-28  Score=202.06  Aligned_cols=290  Identities=20%  Similarity=0.395  Sum_probs=224.4

Q ss_pred             ccccc--ccccccchHHHHHHHHhhccccccccCCCCCc-CCCccccc--cccccccCC-hhHHHHHHHhccC-------
Q 048459           25 YYCDY--CGICRSKKSLILSHIASHHKEDEERVDGDGET-KGVQCNTC--EECGASFKK-PAYLKQHMLSHLL-------   91 (362)
Q Consensus        25 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~-~~~~~~~C--~~C~~~f~~-~~~l~~H~~~h~~-------   91 (362)
                      ..|.+  |........+|..|+-.|.......+.....- .....+.|  ..|++...+ ..+|.+|.-.|--       
T Consensus        25 L~c~W~~C~~~C~~~~s~~~h~~dHL~~h~~~~~e~~~~~eh~de~qC~w~~C~f~~~~~s~~l~RHvy~H~y~~~l~q~  104 (467)
T KOG3608|consen   25 LTCGWRDCQEICTGEWSLNGHIGDHLEHHAKAQDERGAHAEHTDEHQCTWNSCDFRTENSSADLIRHVYFHCYHTKLKQQ  104 (467)
T ss_pred             eecchhhhhhhhcchhhhhhHHHHHHHhhhccccccccccccccceeEEeccCCccccchHHHHHhhhhhhhhHHHHHHH
Confidence            45665  55555666666666554433222111111111 01112555  458887666 5889999766610       


Q ss_pred             ---------------------------CCCeecccccccccccChhHHHHHHHHcCC--------------CcccCCccC
Q 048459           92 ---------------------------ERPFRCSVDDCHASYRRKDHLTRHLLRHQG--------------KLFKCPIEN  130 (362)
Q Consensus        92 ---------------------------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------------~~~~C~~~~  130 (362)
                                                 ...|.|.|..|+..|.+...|..|+..|..              ..+.|.+..
T Consensus       105 G~~al~~~~dig~c~~~f~~~~~ip~~g~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~  184 (467)
T KOG3608|consen  105 GKLALDLHPDIGACTAPFRLMEKIPALGQNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAM  184 (467)
T ss_pred             HHHHHhcCCCcCcccCCcchhhccccchhhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchh
Confidence                                       133899999999999999999999987731              237899899


Q ss_pred             CchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCH
Q 048459          131 CNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNK  210 (362)
Q Consensus       131 C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~  210 (362)
                      |-+.+.+++.|+.|++ +|.         +++...|+.  ||..|.++..|..|++..+.....  .|.|..|.+.|.++
T Consensus       185 Ct~~~~~k~~LreH~r-~Hs---------~eKvvACp~--Cg~~F~~~tkl~DH~rRqt~l~~n--~fqC~~C~KrFaTe  250 (467)
T KOG3608|consen  185 CTKHMGNKYRLREHIR-THS---------NEKVVACPH--CGELFRTKTKLFDHLRRQTELNTN--SFQCAQCFKRFATE  250 (467)
T ss_pred             hhhhhccHHHHHHHHH-hcC---------CCeEEecch--HHHHhccccHHHHHHHhhhhhcCC--chHHHHHHHHHhHH
Confidence            9999999999999999 554         778999999  999999999999999887765433  57889999999999


Q ss_pred             HHHHHHHhhhCCCcCCCCCCccc-chhHHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          211 QCLEAHIRSCHQYIPCEICGSMQ-LKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       211 ~~l~~H~~~~h~~~~C~~C~~~~-~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      ..|..|+..|-.-|+|+.|..+. ..++|..|++.-+..  .++|+|  +.|.+.|.+.+.|.+|+. +|+ +..|+|..
T Consensus       251 klL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~--dkpfKC--d~Cd~~c~~esdL~kH~~-~HS-~~~y~C~h  324 (467)
T KOG3608|consen  251 KLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSK--DKPFKC--DECDTRCVRESDLAKHVQ-VHS-KTVYQCEH  324 (467)
T ss_pred             HHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhcc--CCCccc--cchhhhhccHHHHHHHHH-hcc-ccceecCC
Confidence            99999999988899999999886 799999999987776  489999  779999999999999998 998 77899999


Q ss_pred             CCCCceeccchhhhhhhhccCcccc--CCCcccchhhhhccccCCCc
Q 048459          290 FGCGMRFAFKHVRDNHEKSGHHVYS--SGDFVESDERFRSRERGGRK  334 (362)
Q Consensus       290 ~~C~~~f~~~~~l~~H~~~~h~~~~--~~~~~~c~~~f~~~~~~~~~  334 (362)
                      ++|..+|.+...+.+|++.+|....  ...|-.|++.|.+...+.++
T Consensus       325 ~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~H  371 (467)
T KOG3608|consen  325 PDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAH  371 (467)
T ss_pred             CCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHH
Confidence            9999999999999999998873221  12344788888776555444

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.94  E-value=7.1e-28  Score=221.94  Aligned_cols=203  Identities=28%  Similarity=0.461  Sum_probs=143.4

Q ss_pred             CCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccC---C
Q 048459           93 RPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQ---E  168 (362)
Q Consensus        93 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~---~  168 (362)
                      .|-.|.+  |.++...+++|+-|.++|++ +||+|.+  |++.|.++.+|+.|+- +|....+     -...+.|+   +
T Consensus       604 dPNqCii--C~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~-vHka~p~-----~R~q~ScP~~~i  673 (958)
T KOG1074|consen  604 DPNQCII--CLRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMS-VHKAKPP-----ARVQFSCPSTFI  673 (958)
T ss_pred             Cccceee--eeecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhccc-ccccCcc-----ccccccCCchhh
Confidence            3467866  88888888888888888888 8888888  8888888888888887 5543322     33567888   8


Q ss_pred             CCcchhccCHHHHHhHHhhccCcCCc---------ccccccCCcCccCCCHHHHHHHHhhhCC-----------------
Q 048459          169 IGCGKVFKYASKLRQHEDSHVNLDSV---------EAFCSEPGCMKYFTNKQCLEAHIRSCHQ-----------------  222 (362)
Q Consensus       169 ~~C~~~f~~~~~l~~H~~~h~~~~~~---------~~~~~C~~C~~~f~~~~~l~~H~~~~h~-----------------  222 (362)
                        |-+.|.+...|..|+++|.+....         -..=.|..|.+.|.....+..++..+-.                 
T Consensus       674 --c~~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~  751 (958)
T KOG1074|consen  674 --CQKKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEE  751 (958)
T ss_pred             --hcccccccccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccc
Confidence              888888888888888888732111         1123567788888888777777776521                 


Q ss_pred             -----CcCCCCCCccc-chhHHHHHHHh-----------------------hccCCC-----------------------
Q 048459          223 -----YIPCEICGSMQ-LKKNIKRHVRT-----------------------HEARDL-----------------------  250 (362)
Q Consensus       223 -----~~~C~~C~~~~-~~~~l~~H~~~-----------------------h~~~~~-----------------------  250 (362)
                           ...+..|+..+ ....+..+-..                       .+++++                       
T Consensus       752 ~~~tp~~~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~  831 (958)
T KOG1074|consen  752 LDVTPPPPENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWN  831 (958)
T ss_pred             cccCCCccccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhc
Confidence                 13344454322 11111111000                       000000                       


Q ss_pred             ---------------------------------------------CCceeecccCccccccCchhHHHHHHhhcCCCccc
Q 048459          251 ---------------------------------------------SERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPF  285 (362)
Q Consensus       251 ---------------------------------------------~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~  285 (362)
                                                                   .....|  .+|++.|.+.++|..|++ .|+++|||
T Consensus       832 ~~~~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C--~vCgk~FsSSsALqiH~r-THtg~KPF  908 (958)
T KOG1074|consen  832 QETSMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVC--NVCGKQFSSSAALEIHMR-THTGPKPF  908 (958)
T ss_pred             ccccccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhh--ccchhcccchHHHHHhhh-cCCCCCCc
Confidence                                                         123678  779999999999999999 99999999


Q ss_pred             ccCCCCCCceeccchhhhhhhhccCcc
Q 048459          286 ACSFFGCGMRFAFKHVRDNHEKSGHHV  312 (362)
Q Consensus       286 ~C~~~~C~~~f~~~~~l~~H~~~~h~~  312 (362)
                      .|.+  |++.|..+.+|+.||.+|+-.
T Consensus       909 ~C~f--C~~aFttrgnLKvHMgtH~w~  933 (958)
T KOG1074|consen  909 FCHF--CEEAFTTRGNLKVHMGTHMWV  933 (958)
T ss_pred             cchh--hhhhhhhhhhhhhhhcccccc
Confidence            9999  999999999999999998743

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.93  E-value=6.6e-27  Score=190.93  Aligned_cols=140  Identities=33%  Similarity=0.614  Sum_probs=128.8

Q ss_pred             CCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCcccc-hhHH
Q 048459          160 DQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQL-KKNI  238 (362)
Q Consensus       160 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~~-~~~l  238 (362)
                      ....|+|+.  ||+.+.+..+|.+|.++|..... ...+.|+.|++.|.+...|..|+++|.-+..|.+|||.|+ ..-|
T Consensus       127 ~~~r~~c~e--Cgk~ysT~snLsrHkQ~H~~~~s-~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLL  203 (279)
T KOG2462|consen  127 KHPRYKCPE--CGKSYSTSSNLSRHKQTHRSLDS-KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLL  203 (279)
T ss_pred             cCCceeccc--cccccccccccchhhcccccccc-cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHh
Confidence            456699999  99999999999999999987666 4568999999999999999999999777999999999996 5559


Q ss_pred             HHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          239 KRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       239 ~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      +.|+++|+|+   |||.|  +.|++.|...++|+.||+ .|.+.|+|+|..  |+|+|...+.|..|..+.-
T Consensus       204 QGHiRTHTGE---KPF~C--~hC~kAFADRSNLRAHmQ-THS~~K~~qC~~--C~KsFsl~SyLnKH~ES~C  267 (279)
T KOG2462|consen  204 QGHIRTHTGE---KPFSC--PHCGKAFADRSNLRAHMQ-THSDVKKHQCPR--CGKSFALKSYLNKHSESAC  267 (279)
T ss_pred             hcccccccCC---CCccC--CcccchhcchHHHHHHHH-hhcCCccccCcc--hhhHHHHHHHHHHhhhhcc
Confidence            9999999998   67999  789999999999999998 999999999999  9999999999999998654

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.92  E-value=6.1e-26  Score=185.32  Aligned_cols=140  Identities=31%  Similarity=0.631  Sum_probs=125.8

Q ss_pred             CCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ......|.|..||+.|.+.+.|.+|.+.|...+.           .+.+.|+.|+|+|.+..+|+.|+++|+  -+..|.
T Consensus       125 ~~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s-----------~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~  191 (279)
T KOG2462|consen  125 AAKHPRYKCPECGKSYSTSSNLSRHKQTHRSLDS-----------KKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECG  191 (279)
T ss_pred             cccCCceeccccccccccccccchhhcccccccc-----------cccccCCCCCceeeehHHHhhHhhccC--CCcccc
Confidence            3456679999999999999999999999987654           455899999999999999999999998  578996


Q ss_pred             cccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccC
Q 048459           99 VDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKY  177 (362)
Q Consensus        99 ~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~  177 (362)
                      +  ||+.|.....|+-|+++|+| +||.|+.  |++.|.++++|+.||++|.          +.++|.|..  |++.|..
T Consensus       192 i--CGKaFSRPWLLQGHiRTHTGEKPF~C~h--C~kAFADRSNLRAHmQTHS----------~~K~~qC~~--C~KsFsl  255 (279)
T KOG2462|consen  192 I--CGKAFSRPWLLQGHIRTHTGEKPFSCPH--CGKAFADRSNLRAHMQTHS----------DVKKHQCPR--CGKSFAL  255 (279)
T ss_pred             c--ccccccchHHhhcccccccCCCCccCCc--ccchhcchHHHHHHHHhhc----------CCccccCcc--hhhHHHH
Confidence            6  99999999999999999999 9999988  9999999999999999544          678999999  9999999


Q ss_pred             HHHHHhHHhh
Q 048459          178 ASKLRQHEDS  187 (362)
Q Consensus       178 ~~~l~~H~~~  187 (362)
                      ++.|.+|...
T Consensus       256 ~SyLnKH~ES  265 (279)
T KOG2462|consen  256 KSYLNKHSES  265 (279)
T ss_pred             HHHHHHhhhh
Confidence            9999999854

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.90  E-value=3.5e-24  Score=194.55  Aligned_cols=110  Identities=30%  Similarity=0.645  Sum_probs=97.1

Q ss_pred             CCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCC---------
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLE---------   92 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------   92 (362)
                      .....|++|.+.|.+...|++|++.-+...+            ..|.|..|..+|.++..|.+||.+|...         
T Consensus       208 sqlltcpycdrgykrltslkeHikyrhekne------------~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltq  275 (1007)
T KOG3623|consen  208 SQLLTCPYCDRGYKRLTSLKEHIKYRHEKNE------------PNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQ  275 (1007)
T ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHhhCC------------CCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccc
Confidence            3457899999999999999999998776543            3499999999999999999999988542         


Q ss_pred             ----CCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHH
Q 048459           93 ----RPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKE  147 (362)
Q Consensus        93 ----~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~  147 (362)
                          +.|+|  .+|+++|+.+..|..|+++|.| +||.|+.  |+++|+....+-.||..
T Consensus       276 sa~lRKFKC--tECgKAFKfKHHLKEHlRIHSGEKPfeCpn--CkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  276 SALLRKFKC--TECGKAFKFKHHLKEHLRIHSGEKPFECPN--CKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             hhhhccccc--cccchhhhhHHHHHhhheeecCCCCcCCcc--cccccccCCcccccccc
Confidence                45999  5699999999999999999999 9999976  99999999999999753

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.89  E-value=3.4e-24  Score=197.89  Aligned_cols=207  Identities=25%  Similarity=0.488  Sum_probs=157.5

Q ss_pred             cccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-----CcccCC---ccCCchhccC
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-----KLFKCP---IENCNREFTI  137 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~~~~C~---~~~C~~~f~~  137 (362)
                      +..|-+|.++.+-+++|+.|.++|+|++||+|.+  |+++|.++.+|+.||..|..     ..+.|+   +  |-+.|..
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~i--c~~kftn  680 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFI--CQKKFTN  680 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhcccccccCccccccccCCchhh--hcccccc
Confidence            3479999999999999999999999999999987  99999999999999999976     458999   8  9999999


Q ss_pred             hhHHHHHHHHhcCCCCCCCC---CCCCCccccCCCCcchhccCHHHHHhHHhhccCc----------------CCccccc
Q 048459          138 QGNMKRHVKELHHEGTTSTD---SGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNL----------------DSVEAFC  198 (362)
Q Consensus       138 ~~~l~~H~~~~h~~~~~~~~---~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~----------------~~~~~~~  198 (362)
                      .-.|..|++.|.....+...   ......-.|..  |.+.|.....+..++..|.+.                ....-..
T Consensus       681 ~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~--~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~  758 (958)
T KOG1074|consen  681 AVTLPQHIRIHLGGQISNGGTAAEGILAADQCSS--CQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPP  758 (958)
T ss_pred             cccccceEEeecCCCCCCCcccccccchhcccch--hhhcccccccchhhhhccCCcccCCcccccccccccccccCCCc
Confidence            99999999844433222211   22223457888  999998888888887776321                0000123


Q ss_pred             ccCCcCccCCCHHHHHHHHhhhC--C-------C----------------------------------------------
Q 048459          199 SEPGCMKYFTNKQCLEAHIRSCH--Q-------Y----------------------------------------------  223 (362)
Q Consensus       199 ~C~~C~~~f~~~~~l~~H~~~~h--~-------~----------------------------------------------  223 (362)
                      .+..|+..+.....+..+-...-  .       .                                              
T Consensus       759 ~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~  838 (958)
T KOG1074|consen  759 PENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLN  838 (958)
T ss_pred             cccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcccccccc
Confidence            44567776655544444322210  0       0                                              


Q ss_pred             -----------------------------------------cCCCCCCccc-chhHHHHHHHhhccCCCCCceeecccCc
Q 048459          224 -----------------------------------------IPCEICGSMQ-LKKNIKRHVRTHEARDLSERIKCQFKGC  261 (362)
Q Consensus       224 -----------------------------------------~~C~~C~~~~-~~~~l~~H~~~h~~~~~~~~~~C~~~~C  261 (362)
                                                               ..|.+||+.| +.+.|..|+++|.++   ++|.|.+  |
T Consensus       839 eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~---KPF~C~f--C  913 (958)
T KOG1074|consen  839 EGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGP---KPFFCHF--C  913 (958)
T ss_pred             cccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCC---CCccchh--h
Confidence                                                     5699999999 788999999999998   6799955  9


Q ss_pred             cccccCchhHHHHHHhhcCCCcc
Q 048459          262 LLSFSTNSNLRQHVKAVHYEIKP  284 (362)
Q Consensus       262 ~~~f~~~~~L~~H~~~~H~~~~~  284 (362)
                      ++.|..+..|+.||. .|....+
T Consensus       914 ~~aFttrgnLKvHMg-tH~w~q~  935 (958)
T KOG1074|consen  914 EEAFTTRGNLKVHMG-THMWVQP  935 (958)
T ss_pred             hhhhhhhhhhhhhhc-cccccCC
Confidence            999999999999998 7765433

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.80  E-value=4.2e-20  Score=168.35  Aligned_cols=96  Identities=21%  Similarity=0.486  Sum_probs=80.3

Q ss_pred             CCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeecccc
Q 048459           21 DVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVD  100 (362)
Q Consensus        21 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~  100 (362)
                      .+..|.|..|.++|..+..|++|+..|....+..+.. ......+.|+|..|+|.|+.+..|+.|+|+|.|++||.|  +
T Consensus       237 ne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sl-tqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeC--p  313 (1007)
T KOG3623|consen  237 NEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISL-TQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFEC--P  313 (1007)
T ss_pred             CCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccc-cchhhhccccccccchhhhhHHHHHhhheeecCCCCcCC--c
Confidence            3556889999999999999999999998765432111 111345669999999999999999999999999999999  6


Q ss_pred             cccccccChhHHHHHHHHc
Q 048459          101 DCHASYRRKDHLTRHLLRH  119 (362)
Q Consensus       101 ~C~~~f~~~~~l~~H~~~h  119 (362)
                      .|+++|....++..||...
T Consensus       314 nCkKRFSHSGSySSHmSSK  332 (1007)
T KOG3623|consen  314 NCKKRFSHSGSYSSHMSSK  332 (1007)
T ss_pred             ccccccccCCccccccccc
Confidence            7999999999999998653

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.64  E-value=4.1e-17  Score=126.87  Aligned_cols=123  Identities=24%  Similarity=0.515  Sum_probs=103.8

Q ss_pred             CCCccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhH
Q 048459           62 KGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGN  140 (362)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~  140 (362)
                      .+...|.|.+|+|.|.-...|.+||+.|...+.+.|..  ||+.|.....|.+|+++|++ +||+|..  |++.|..+-.
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~--cgkgfndtfdlkrh~rthtgvrpykc~~--c~kaftqrcs  188 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKCSL--CEKAFTQRCS  188 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhh--ccCcccchhhhhhhhccccCccccchhh--hhHHHHhhcc
Confidence            34556999999999999999999999999999999977  99999999999999999999 9999988  9999999999


Q ss_pred             HHHHHHHhcCCCCCCCC-CCCCCccccCCCCcchhccCHHHHHhHHhhccC
Q 048459          141 MKRHVKELHHEGTTSTD-SGDQKQYICQEIGCGKVFKYASKLRQHEDSHVN  190 (362)
Q Consensus       141 l~~H~~~~h~~~~~~~~-~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  190 (362)
                      |..|++.+|+.....+. ....+.|.|+.  ||.+-.....+..|+..|+.
T Consensus       189 leshl~kvhgv~~~yaykerr~kl~vced--cg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  189 LESHLKKVHGVQHQYAYKERRAKLYVCED--CGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             HHHHHHHHcCchHHHHHHHhhhheeeecc--cCCCCCChhHHHHHHHhcCC
Confidence            99999999974222111 12346678888  88888888888888877764

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.62  E-value=2.2e-16  Score=122.91  Aligned_cols=114  Identities=27%  Similarity=0.553  Sum_probs=102.0

Q ss_pred             CCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ..+...|.|.+|+|.|.-..-|.+|++-|...              +.+.|..||+.|....+|++|+++|+|.+||+|.
T Consensus       112 ssd~d~ftCrvCgK~F~lQRmlnrh~kch~~v--------------kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~  177 (267)
T KOG3576|consen  112 SSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDV--------------KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCS  177 (267)
T ss_pred             CCCCCeeeeehhhhhhhHHHHHHHHhhhccHH--------------HHHHHhhccCcccchhhhhhhhccccCccccchh
Confidence            34567899999999999999999999999875              4499999999999999999999999999999997


Q ss_pred             cccccccccChhHHHHHHHHcCC------------CcccCCccCCchhccChhHHHHHHHHhcC
Q 048459           99 VDDCHASYRRKDHLTRHLLRHQG------------KLFKCPIENCNREFTIQGNMKRHVKELHH  150 (362)
Q Consensus        99 ~~~C~~~f~~~~~l~~H~~~h~~------------~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  150 (362)
                      .  |+++|..+-+|..|++.-++            +.|.|.  +||..-.....+..|+..+|.
T Consensus       178 ~--c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vce--dcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  178 L--CEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCE--DCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             h--hhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeec--ccCCCCCChhHHHHHHHhcCC
Confidence            7  99999999999999875432            569995  599999999999999997774

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.29  E-value=1e-11  Score=114.88  Aligned_cols=150  Identities=21%  Similarity=0.448  Sum_probs=115.4

Q ss_pred             CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccC
Q 048459          122 KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEP  201 (362)
Q Consensus       122 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~  201 (362)
                      ....|+.  |..... ...|..|... -          ......|+..+|+..|.. ..+..|+             .|+
T Consensus       406 ~~V~C~N--C~~~i~-l~~l~lHe~~-C----------~r~~V~Cp~~~Cg~v~~r-~el~~H~-------------~C~  457 (567)
T PLN03086        406 DTVECRN--CKHYIP-SRSIALHEAY-C----------SRHNVVCPHDGCGIVLRV-EEAKNHV-------------HCE  457 (567)
T ss_pred             CeEECCC--CCCccc-hhHHHHHHhh-C----------CCcceeCCcccccceeec-cccccCc-------------cCC
Confidence            3457865  888766 4567788752 2          224456875459998843 3445542             789


Q ss_pred             CcCccCCCHHHHHHHHhhhCCCcCCCCCCcccchhHHHHHHHhhccCCCCCceeecccCcccccc----------CchhH
Q 048459          202 GCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFS----------TNSNL  271 (362)
Q Consensus       202 ~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~----------~~~~L  271 (362)
                      .|++.|. ...|..|+..+|.++.|+ ||+.+.+..|..|+.+|.+.   +++.|.+  |++.|.          ..+.|
T Consensus       458 ~Cgk~f~-~s~LekH~~~~Hkpv~Cp-Cg~~~~R~~L~~H~~thCp~---Kpi~C~f--C~~~v~~g~~~~d~~d~~s~L  530 (567)
T PLN03086        458 KCGQAFQ-QGEMEKHMKVFHEPLQCP-CGVVLEKEQMVQHQASTCPL---RLITCRF--CGDMVQAGGSAMDVRDRLRGM  530 (567)
T ss_pred             CCCCccc-hHHHHHHHHhcCCCccCC-CCCCcchhHHHhhhhccCCC---CceeCCC--CCCccccCccccchhhhhhhH
Confidence            9999996 678999999999999999 99877788999999999886   6799966  999995          24589


Q ss_pred             HHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccCc
Q 048459          272 RQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHH  311 (362)
Q Consensus       272 ~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  311 (362)
                      ..|.. .. +.+++.|..  ||+.+..+ .|..|+...|.
T Consensus       531 t~HE~-~C-G~rt~~C~~--Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        531 SEHES-IC-GSRTAPCDS--CGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             HHHHH-hc-CCcceEccc--cCCeeeeh-hHHHHHHHhhc
Confidence            99987 44 899999999  99988655 58899887664

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.95  E-value=2.3e-09  Score=99.52  Aligned_cols=98  Identities=21%  Similarity=0.539  Sum_probs=64.8

Q ss_pred             ccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccC--------
Q 048459           67 NTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTI--------  137 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~--------  137 (362)
                      +.|+.|++.|. ...|..|+..++  .++.|  + |++.+ .+..|..|+..|.+ +++.|+.  |++.+..        
T Consensus       454 ~~C~~Cgk~f~-~s~LekH~~~~H--kpv~C--p-Cg~~~-~R~~L~~H~~thCp~Kpi~C~f--C~~~v~~g~~~~d~~  524 (567)
T PLN03086        454 VHCEKCGQAFQ-QGEMEKHMKVFH--EPLQC--P-CGVVL-EKEQMVQHQASTCPLRLITCRF--CGDMVQAGGSAMDVR  524 (567)
T ss_pred             ccCCCCCCccc-hHHHHHHHHhcC--CCccC--C-CCCCc-chhHHHhhhhccCCCCceeCCC--CCCccccCccccchh
Confidence            45777777775 566777777764  66777  4 77544 55777777777766 7777776  7777631        


Q ss_pred             --hhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhh
Q 048459          138 --QGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDS  187 (362)
Q Consensus       138 --~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~  187 (362)
                        ...|..|... .          +.+++.|..  ||+.+..+ .|..|+..
T Consensus       525 d~~s~Lt~HE~~-C----------G~rt~~C~~--Cgk~Vrlr-dm~~H~~~  562 (567)
T PLN03086        525 DRLRGMSEHESI-C----------GSRTAPCDS--CGRSVMLK-EMDIHQIA  562 (567)
T ss_pred             hhhhhHHHHHHh-c----------CCcceEccc--cCCeeeeh-hHHHHHHH
Confidence              2356777653 3          456777777  77777777 35556543

>PHA00733 hypothetical protein

Probab=98.89  E-value=2.1e-09  Score=81.30  Aligned_cols=80  Identities=19%  Similarity=0.398  Sum_probs=45.8

Q ss_pred             cccccccccccCChhHHHHH--HH---hccCCCCeecccccccccccChhHHHHHHHHcCCCcccCCccCCchhccChhH
Q 048459           66 CNTCEECGASFKKPAYLKQH--ML---SHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGN  140 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H--~~---~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~~~C~~~f~~~~~  140 (362)
                      ++.|.+|.+.|.+...|..+  +.   .+.+..||.|..  |++.|.+...|..|++.+. .+|.|+.  |++.|.....
T Consensus        40 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~--Cgk~Fss~s~L~~H~r~h~-~~~~C~~--CgK~F~~~~s  114 (128)
T PHA00733         40 RLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPL--CLMPFSSSVSLKQHIRYTE-HSKVCPV--CGKEFRNTDS  114 (128)
T ss_pred             hHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCC--CCCcCCCHHHHHHHHhcCC-cCccCCC--CCCccCCHHH
Confidence            35666666666555544444  11   123355666633  6666666666666666542 4566655  6666666666


Q ss_pred             HHHHHHHhcC
Q 048459          141 MKRHVKELHH  150 (362)
Q Consensus       141 l~~H~~~~h~  150 (362)
                      |..|+...|.
T Consensus       115 L~~H~~~~h~  124 (128)
T PHA00733        115 TLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHhcC
Confidence            6666665554

>PHA00733 hypothetical protein

Probab=98.87  E-value=1.5e-09  Score=82.00  Aligned_cols=54  Identities=26%  Similarity=0.550  Sum_probs=48.6

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccCcc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHV  312 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~  312 (362)
                      ++|.|  +.|++.|.+...|..|++ .|  ..+|.|.+  |++.|.....|..|+...|++
T Consensus        72 kPy~C--~~Cgk~Fss~s~L~~H~r-~h--~~~~~C~~--CgK~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733         72 SPYVC--PLCLMPFSSSVSLKQHIR-YT--EHSKVCPV--CGKEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             CCccC--CCCCCcCCCHHHHHHHHh-cC--CcCccCCC--CCCccCCHHHHHHHHHHhcCc
Confidence            67999  779999999999999998 55  45799999  999999999999999998876

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.80  E-value=8.8e-10  Score=95.81  Aligned_cols=170  Identities=17%  Similarity=0.302  Sum_probs=105.0

Q ss_pred             cccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCCCcccCCc-cCC-chhccChhHHHH
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPI-ENC-NREFTIQGNMKR  143 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~-~~C-~~~f~~~~~l~~  143 (362)
                      -|.|..|...|.+...|.+|.-.....-.|+|  ++|+++|....+|..|.+||..++-.=.. ..= ...-.+....+.
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrC--PEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~e  344 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRC--PECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQE  344 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecC--CcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhh
Confidence            38999999999999999999754444456999  66999999999999999999753211100 000 000111111111


Q ss_pred             HHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCc--------------------------------
Q 048459          144 HVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNL--------------------------------  191 (362)
Q Consensus       144 H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--------------------------------  191 (362)
                          ...    ..+...+..|.|.+  |++.|.....|+.|+.+|+..                                
T Consensus       345 ----a~r----sg~dss~gi~~C~~--C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~  414 (500)
T KOG3993|consen  345 ----AER----SGDDSSSGIFSCHT--CGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSAS  414 (500)
T ss_pred             ----ccc----cCCcccCceeecHH--hhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccc
Confidence                100    11112334677888  888888887787776666421                                


Q ss_pred             ----------CCcccccccCCcCccCCCHHHHHHHHhhhC--CCcCCCCCCccc-chhHHHHHHHhhcc
Q 048459          192 ----------DSVEAFCSEPGCMKYFTNKQCLEAHIRSCH--QYIPCEICGSMQ-LKKNIKRHVRTHEA  247 (362)
Q Consensus       192 ----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h--~~~~C~~C~~~~-~~~~l~~H~~~h~~  247 (362)
                                -.....-.++.|+..+.++..-..+.+.-+  ..|.|.+|.-+| +...|.+|+...+.
T Consensus       415 ~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp  483 (500)
T KOG3993|consen  415 DSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP  483 (500)
T ss_pred             cccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence                      000111245778877776665555553322  368899999776 67788888776553

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.75  E-value=1.4e-09  Score=94.65  Aligned_cols=177  Identities=20%  Similarity=0.276  Sum_probs=105.0

Q ss_pred             CCccccccccccccchHHHHHHHH--hhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCC-------
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIA--SHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLE-------   92 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~--~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------   92 (362)
                      ...|.|..|...|.+...|.+|.-  +.+.+                |.|+.|+|+|+-..+|..|.++|...       
T Consensus       265 iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vE----------------YrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~  328 (500)
T KOG3993|consen  265 IGDYICQLCKEKYEDAFALAQHRCPRIVHVE----------------YRCPECDKVFSCPANLASHRRWHKPRPEAAKAG  328 (500)
T ss_pred             HHHHHHHHHHHhhhhHHHHhhccCCeeEEee----------------ecCCcccccccCchhhhhhhcccCCchhhhhcC
Confidence            446999999999999999999964  34444                99999999999999999999999531       


Q ss_pred             --------------------------CCeecccccccccccChhHHHHHHHHcCCCcccCCc------cCCchhccChhH
Q 048459           93 --------------------------RPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPI------ENCNREFTIQGN  140 (362)
Q Consensus        93 --------------------------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~------~~C~~~f~~~~~  140 (362)
                                                ..|.|..  |++.|.++..|+.|+.+|+..+..=..      +.---.+.....
T Consensus       329 ~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~--C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~  406 (500)
T KOG3993|consen  329 SPPPKQAVETRAEVQEAERSGDDSSSGIFSCHT--CGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQA  406 (500)
T ss_pred             CCChhhhhhhhhhhhhccccCCcccCceeecHH--hhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccc
Confidence                                      1266644  666666666666666666541100000      000000000011


Q ss_pred             HHHHHHHhcCCCCCCC-CCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhh
Q 048459          141 MKRHVKELHHEGTTST-DSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRS  219 (362)
Q Consensus       141 l~~H~~~~h~~~~~~~-~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  219 (362)
                      +-.|....+..+.... .........|+.  |+..+.+...--.+.+.-....    .|.|.+|..+|.+...|.+|+..
T Consensus       407 ~a~h~~a~~~~g~~vl~~a~sael~~pp~--~~~ppsss~~sgg~~rlg~~~q----~f~~ky~~atfyss~~ltrhin~  480 (500)
T KOG3993|consen  407 VATHSSASDSHGDEVLYVAGSAELELPPY--DGSPPSSSGSSGGYGRLGIAEQ----GFTCKYCPATFYSSPGLTRHINK  480 (500)
T ss_pred             cccccccccccccceeeeeccccccCCCC--CCCCcccCCCCCccccccchhh----ccccccchHhhhcCcchHhHhhh
Confidence            1111111111000000 011122345677  7776666655455554444422    35778899999999999999988


Q ss_pred             hCC
Q 048459          220 CHQ  222 (362)
Q Consensus       220 ~h~  222 (362)
                      .|.
T Consensus       481 ~Hp  483 (500)
T KOG3993|consen  481 CHP  483 (500)
T ss_pred             cCh
Confidence            774

>PHA02768 hypothetical protein; Provisional

Probab=98.69  E-value=1.1e-08  Score=63.35  Aligned_cols=44  Identities=14%  Similarity=0.120  Sum_probs=37.8

Q ss_pred             ceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhh
Q 048459          253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRD  303 (362)
Q Consensus       253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~  303 (362)
                      .|.|  +.||+.|...+.|..|++ .|+  ++|+|..  |++.|.+.+.|.
T Consensus         5 ~y~C--~~CGK~Fs~~~~L~~H~r-~H~--k~~kc~~--C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYEC--PICGEIYIKRKSMITHLR-KHN--TNLKLSN--CKRISLRTGEYI   48 (55)
T ss_pred             ccCc--chhCCeeccHHHHHHHHH-hcC--CcccCCc--ccceecccceeE
Confidence            4888  779999999999999998 787  6899988  999998887775

>PHA02768 hypothetical protein; Provisional

Probab=98.68  E-value=9.5e-09  Score=63.62  Aligned_cols=43  Identities=21%  Similarity=0.414  Sum_probs=36.1

Q ss_pred             ccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHH
Q 048459           67 NTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLT  113 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~  113 (362)
                      |.|+.||+.|.....|..|+++|+  ++|+|.  .|++.|...+.|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~--~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLS--NCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCC--cccceecccceeE
Confidence            889999999999999999999988  688894  4999888776653

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.53  E-value=6.2e-08  Score=51.17  Aligned_cols=26  Identities=42%  Similarity=1.011  Sum_probs=22.3

Q ss_pred             hHHHHHHhhcCCCcccccCCCCCCceecc
Q 048459          270 NLRQHVKAVHYEIKPFACSFFGCGMRFAF  298 (362)
Q Consensus       270 ~L~~H~~~~H~~~~~~~C~~~~C~~~f~~  298 (362)
                      +|.+|++ .|++++||+|++  |+++|.+
T Consensus         1 ~l~~H~~-~H~~~k~~~C~~--C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMR-THTGEKPYKCPY--CGKSFSN   26 (26)
T ss_dssp             HHHHHHH-HHSSSSSEEESS--SSEEESS
T ss_pred             CHHHHhh-hcCCCCCCCCCC--CcCeeCc
Confidence            4788998 899999999999  9998863

...

>PHA00732 hypothetical protein

Probab=98.34  E-value=3.4e-07  Score=62.62  Aligned_cols=48  Identities=25%  Similarity=0.560  Sum_probs=31.2

Q ss_pred             ccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhcc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHL   90 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   90 (362)
                      ||.|..|++.|.+.+.|..|++.++..                +.|+.|++.|.   .|..|+.+..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~----------------~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL----------------TKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC----------------CccCCCCCEeC---ChhhhhcccC
Confidence            467777777777777777777643322                45777777776   3666765544

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.28  E-value=6e-07  Score=47.36  Aligned_cols=26  Identities=35%  Similarity=0.850  Sum_probs=22.1

Q ss_pred             HHHHHHHhccCCCCeecccccccccccC
Q 048459           81 YLKQHMLSHLLERPFRCSVDDCHASYRR  108 (362)
Q Consensus        81 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~  108 (362)
                      +|.+||++|++++||.|+.  |++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~--C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPY--CGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESS--SSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCC--CcCeeCc
Confidence            4889999999999999955  9998863

...

>PHA00616 hypothetical protein

Probab=98.28  E-value=4.1e-07  Score=53.53  Aligned_cols=34  Identities=24%  Similarity=0.432  Sum_probs=30.6

Q ss_pred             cccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      +|+|+.||+.|..++.|.+|++.|++++++.|.+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            4889999999999999999999999999998864

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.23  E-value=2.2e-06  Score=54.43  Aligned_cols=52  Identities=23%  Similarity=0.548  Sum_probs=37.6

Q ss_pred             ccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhcc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHL   90 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   90 (362)
                      .|.|++|++ ..+...|..|....|....            +.+.||+|...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~------------~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSES------------KNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCC------------CCccCCCchhhhh--hHHHHHHHHhc
Confidence            588888888 4556788888887776533            3478888887654  37888887654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.05  E-value=3.7e-06  Score=57.51  Aligned_cols=47  Identities=26%  Similarity=0.381  Sum_probs=35.7

Q ss_pred             ceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhcc
Q 048459          253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      +|.|  +.|++.|.+...|..|++..|.+   +.|+.  ||++|.   .|..|+++.
T Consensus         1 py~C--~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~--CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKC--PICGFTTVTLFALKQHARRNHTL---TKCPV--CNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccC--CCCCCccCCHHHHHHHhhcccCC---CccCC--CCCEeC---Chhhhhccc
Confidence            4678  67888888888888888744653   57888  888887   577888654

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.04  E-value=4.4e-06  Score=53.01  Aligned_cols=50  Identities=26%  Similarity=0.437  Sum_probs=29.6

Q ss_pred             eeecccCccccccCchhHHHHHHhhcCCC-cccccCCCCCCceeccchhhhhhhhccC
Q 048459          254 IKCQFKGCLLSFSTNSNLRQHVKAVHYEI-KPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       254 ~~C~~~~C~~~f~~~~~L~~H~~~~H~~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      |.|++  |++ ..+...|..|+...|..+ +.+.|++  |...+.  .+|..|+...|
T Consensus         3 f~CP~--C~~-~~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPY--CGK-GFSESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCC--CCC-ccCHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHhc
Confidence            66633  666 344566666666666554 3466766  666543  36666666555

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00616 hypothetical protein

Probab=97.97  E-value=2.7e-06  Score=50.08  Aligned_cols=34  Identities=12%  Similarity=0.243  Sum_probs=27.2

Q ss_pred             ceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      +|+|  +.||+.|.+++.|..|++ .|++++++.|+.
T Consensus         1 pYqC--~~CG~~F~~~s~l~~H~r-~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQC--LRCGGIFRKKKEVIEHLL-SVHKQNKLTLEY   34 (44)
T ss_pred             CCcc--chhhHHHhhHHHHHHHHH-HhcCCCccceeE
Confidence            4778  778888888888888887 777778888765

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.88  E-value=9.2e-06  Score=41.54  Aligned_cols=23  Identities=39%  Similarity=0.690  Sum_probs=21.6

Q ss_pred             cccccccccccchHHHHHHHHhh
Q 048459           25 YYCDYCGICRSKKSLILSHIASH   47 (362)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~H~~~h   47 (362)
                      |.|..|++.|.+++.|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.80  E-value=1e-05  Score=41.39  Aligned_cols=22  Identities=41%  Similarity=0.754  Sum_probs=13.4

Q ss_pred             ccccccccccCChhHHHHHHHh
Q 048459           67 NTCEECGASFKKPAYLKQHMLS   88 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~   88 (362)
                      |.|+.|++.|.+...|.+|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            3566666666666666666654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.70  E-value=1.6e-05  Score=67.19  Aligned_cols=55  Identities=25%  Similarity=0.550  Sum_probs=48.8

Q ss_pred             CCceeecccCccccccCchhHHHHHHhhcC------------------CCcccccCCCCCCceeccchhhhhhhh
Q 048459          251 SERIKCQFKGCLLSFSTNSNLRQHVKAVHY------------------EIKPFACSFFGCGMRFAFKHVRDNHEK  307 (362)
Q Consensus       251 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~  307 (362)
                      .++|+|+++.|.|.+.+...|+.|+..-|.                  .+|||.|++  |+|+|+..-.|+.|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCev--C~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEV--CDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccc--cchhhccCccceeccc
Confidence            378999999999999999999999875551                  248999999  9999999999999976

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.67  E-value=3.4e-05  Score=39.74  Aligned_cols=24  Identities=33%  Similarity=0.710  Sum_probs=20.6

Q ss_pred             cccccccccccchHHHHHHHHhhc
Q 048459           25 YYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      |.|++|++.|.+...|..|++.++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999999875

...

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.61  E-value=0.0001  Score=63.22  Aligned_cols=146  Identities=25%  Similarity=0.428  Sum_probs=93.9

Q ss_pred             CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccC
Q 048459          122 KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEP  201 (362)
Q Consensus       122 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~  201 (362)
                      ..|.|+.+.|......-..|+.|.+..|..-.-..-....+.|.|.+     ..-+...|+.|...--.+..+..-=.|.
T Consensus       150 L~F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~-----~lF~~~~Lr~H~~~G~~e~GFKGHP~C~  224 (493)
T COG5236         150 LSFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEI-----RLFRSSTLRDHKNGGLEEEGFKGHPLCI  224 (493)
T ss_pred             HHhcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccce-----eeeecccccccccCCccccCcCCCchhh
Confidence            34788877788887778888888887774211000011222333333     2334557777765433332232223678


Q ss_pred             CcCccCCCHHHHHHHHhhhCCCcCCCCCCcc-------c-chhHHHHHHHhhccCCCCCceeecccCcc----ccccCch
Q 048459          202 GCMKYFTNKQCLEAHIRSCHQYIPCEICGSM-------Q-LKKNIKRHVRTHEARDLSERIKCQFKGCL----LSFSTNS  269 (362)
Q Consensus       202 ~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~-------~-~~~~l~~H~~~h~~~~~~~~~~C~~~~C~----~~f~~~~  269 (362)
                      .|...|..-.+|.+|++..|.  .|.+|.++       | ...+|..|.+.-+       |.|++..|.    ..|....
T Consensus       225 FC~~~FYdDDEL~~HcR~~HE--~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h-------y~ct~qtc~~~k~~vf~~~~  295 (493)
T COG5236         225 FCKIYFYDDDELRRHCRLRHE--ACHICDMVGPIRYQYFKSYEDLEAHFRNAH-------YCCTFQTCRVGKCYVFPYHT  295 (493)
T ss_pred             hccceecChHHHHHHHHhhhh--hhhhhhccCccchhhhhCHHHHHHHhhcCc-------eEEEEEEEecCcEEEeccHH
Confidence            899999999999999998775  46666643       4 4667888866433       777776665    4688889


Q ss_pred             hHHHHHHhhcCC
Q 048459          270 NLRQHVKAVHYE  281 (362)
Q Consensus       270 ~L~~H~~~~H~~  281 (362)
                      .|+.|+...|..
T Consensus       296 el~~h~~~~h~~  307 (493)
T COG5236         296 ELLEHLTRFHKV  307 (493)
T ss_pred             HHHHHHHHHhhc
Confidence            999999877853

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.56  E-value=4.3e-05  Score=40.74  Aligned_cols=26  Identities=35%  Similarity=0.508  Sum_probs=24.0

Q ss_pred             ccccccccccccchHHHHHHHHhhcc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHK   49 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~   49 (362)
                      +|.|..|++.|.+...|..|++.|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68999999999999999999988764

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.52  E-value=6.4e-05  Score=54.70  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=0.0

Q ss_pred             ccccccccccchHHHHHHHHhhccc
Q 048459           26 YCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        26 ~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +|..|+..|.+...|..|+...|+.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~   25 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGF   25 (100)
T ss_dssp             -------------------------
T ss_pred             Ccccccccccccccccccccccccc
Confidence            4677777777777777777665553

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.47  E-value=4.5e-05  Score=64.53  Aligned_cols=63  Identities=32%  Similarity=0.660  Sum_probs=46.2

Q ss_pred             CcccCCccCCchhccChhHHHHHHHHhcCCC-----CCCC----CCCCCCccccCCCCcchhccCHHHHHhHHh
Q 048459          122 KLFKCPIENCNREFTIQGNMKRHVKELHHEG-----TTST----DSGDQKQYICQEIGCGKVFKYASKLRQHED  186 (362)
Q Consensus       122 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~-----~~~~----~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~  186 (362)
                      +||+|++++|++.|.+..-|+-|+.--|...     +.+.    ...+.+||.|+.  |++.|.+...|+-|..
T Consensus       348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCev--C~KRYKNlNGLKYHr~  419 (423)
T COG5189         348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEV--CDKRYKNLNGLKYHRK  419 (423)
T ss_pred             ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccc--cchhhccCccceeccc
Confidence            8899999999999999999999986444221     1110    123568899998  9999988888888753

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.46  E-value=5e-05  Score=39.09  Aligned_cols=23  Identities=30%  Similarity=0.665  Sum_probs=11.1

Q ss_pred             cccCCCCCCceeccchhhhhhhhcc
Q 048459          285 FACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       285 ~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      |+|++  |++.|.+...|..|++++
T Consensus         1 ~~C~~--C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPI--CGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SS--TS-EESSHHHHHHHHHHH
T ss_pred             CCCcC--CCCcCCcHHHHHHHHHhh
Confidence            34555  555555555555555544

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.35  E-value=9.3e-05  Score=39.41  Aligned_cols=25  Identities=32%  Similarity=0.668  Sum_probs=15.7

Q ss_pred             ccccCCCCCCceeccchhhhhhhhccC
Q 048459          284 PFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       284 ~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      ||+|..  |++.|.+...|..|++.|+
T Consensus         1 ~~~C~~--C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDE--CGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETT--TTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCc--cCCccCChhHHHHHhHHhc
Confidence            456666  6666666666666666554

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.28  E-value=0.00016  Score=52.54  Aligned_cols=72  Identities=24%  Similarity=0.385  Sum_probs=14.6

Q ss_pred             ccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCCCcccCCccCCchhccChhHHHHHHHHh
Q 048459           69 CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKEL  148 (362)
Q Consensus        69 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~~~C~~~f~~~~~l~~H~~~~  148 (362)
                      |..|+..|.+...|..||...++-.. .     ....+.....+..+++.-....+.|.+  |++.|.+...|..|++..
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~-~-----~~~~l~~~~~~~~~~~~~~~~~~~C~~--C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDI-P-----DQKYLVDPNRLLNYLRKKVKESFRCPY--CNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -----------------------------------------------------SSEEBSS--SS-EESSHHHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccc-c-----cccccccccccccccccccCCCCCCCc--cCCCCcCHHHHHHHHcCc
Confidence            66666666666666666654332110 0     111122333333333332223466665  666666666666666643

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.88  E-value=0.00083  Score=40.50  Aligned_cols=32  Identities=28%  Similarity=0.587  Sum_probs=19.9

Q ss_pred             CCccccccccccccCChhHHHHHHHhccCCCC
Q 048459           63 GVQCNTCEECGASFKKPAYLKQHMLSHLLERP   94 (362)
Q Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   94 (362)
                      ..++-+|++|+..+....+|++|+..+++.+|
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            34667888888888888888888877666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.80  E-value=0.0011  Score=56.97  Aligned_cols=135  Identities=22%  Similarity=0.392  Sum_probs=90.7

Q ss_pred             cccccc--ccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccccccc---ccC------ChhHHHHHHHhccCC
Q 048459           24 RYYCDY--CGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGA---SFK------KPAYLKQHMLSHLLE   92 (362)
Q Consensus        24 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~---~f~------~~~~l~~H~~~h~~~   92 (362)
                      .|.|+.  |......-..|..|.+..|+.                +.|..|-.   .|.      ++..|+.|...-..+
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~----------------~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e  214 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF----------------VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEE  214 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCc----------------EEhHhhhcCcccCccceeeeecccccccccCCccc
Confidence            588886  777777788899999987776                66777743   333      345566665432222


Q ss_pred             CC----eecccccccccccChhHHHHHHHHcCCCcccCCccC--CchhccChhHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 048459           93 RP----FRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIEN--CNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYIC  166 (362)
Q Consensus        93 ~~----~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C  166 (362)
                      ..    =.|.+  |...|.+-.+|..|++..+.+-|.|...+  =..-|.+...|..|.+..|              |.|
T Consensus       215 ~GFKGHP~C~F--C~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h--------------y~c  278 (493)
T COG5236         215 EGFKGHPLCIF--CKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAH--------------YCC  278 (493)
T ss_pred             cCcCCCchhhh--ccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCc--------------eEE
Confidence            12    26877  99999999999999998776444443211  0113778888999987555              666


Q ss_pred             CCCCcc----hhccCHHHHHhHHhhccC
Q 048459          167 QEIGCG----KVFKYASKLRQHEDSHVN  190 (362)
Q Consensus       167 ~~~~C~----~~f~~~~~l~~H~~~h~~  190 (362)
                      ....|.    .+|+....|..|+..-++
T Consensus       279 t~qtc~~~k~~vf~~~~el~~h~~~~h~  306 (493)
T COG5236         279 TFQTCRVGKCYVFPYHTELLEHLTRFHK  306 (493)
T ss_pred             EEEEEecCcEEEeccHHHHHHHHHHHhh
Confidence            654453    378888899999865443

>smart00355 ZnF_C2H2 zinc finger

Probab=96.75  E-value=0.0012  Score=34.36  Aligned_cols=24  Identities=33%  Similarity=0.650  Sum_probs=21.9

Q ss_pred             cccccccccccchHHHHHHHHhhc
Q 048459           25 YYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999999664

>smart00355 ZnF_C2H2 zinc finger

Probab=96.68  E-value=0.0017  Score=33.75  Aligned_cols=24  Identities=46%  Similarity=0.866  Sum_probs=16.7

Q ss_pred             ccccccccccCChhHHHHHHHhcc
Q 048459           67 NTCEECGASFKKPAYLKQHMLSHL   90 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~   90 (362)
                      |.|+.|++.|.+...|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            457777777777777777776553

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0033  Score=60.06  Aligned_cols=99  Identities=21%  Similarity=0.369  Sum_probs=49.9

Q ss_pred             ccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCc---------CccCCCHHHHHHHHhhhC-------CCcCCCC
Q 048459          165 ICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGC---------MKYFTNKQCLEAHIRSCH-------QYIPCEI  228 (362)
Q Consensus       165 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C---------~~~f~~~~~l~~H~~~~h-------~~~~C~~  228 (362)
                      .|..  | -.|.+...|+.|+..-|..      +.|..|         .....+...|..|+..--       +..-|..
T Consensus       117 ~~~~--c-~~~~s~~~Lk~H~~~~H~~------~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~  187 (669)
T KOG2231|consen  117 ECLH--C-TEFKSVENLKNHMRDQHKL------HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKF  187 (669)
T ss_pred             CCcc--c-cchhHHHHHHHHHHHhhhh------hccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchh
Confidence            4666  6 5666777777777432221      122222         222234555666655411       1134666


Q ss_pred             CCccc-chhHHHHHHHhhccCCCCCceeecc----cCccccccCchhHHHHHHhhc
Q 048459          229 CGSMQ-LKKNIKRHVRTHEARDLSERIKCQF----KGCLLSFSTNSNLRQHVKAVH  279 (362)
Q Consensus       229 C~~~~-~~~~l~~H~~~h~~~~~~~~~~C~~----~~C~~~f~~~~~L~~H~~~~H  279 (362)
                      |...| ....|..|++.++       |.|.+    +.++.-|.....|..|.+..|
T Consensus       188 C~~~fld~~el~rH~~~~h-------~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  188 CHERFLDDDELYRHLRFDH-------EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             hhhhhccHHHHHHhhccce-------eheeecCcccccchhcccchHHHHHhhhcC
Confidence            66554 5666666666554       33432    112344566666666666444

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.60  E-value=0.0013  Score=34.08  Aligned_cols=23  Identities=30%  Similarity=0.713  Sum_probs=21.3

Q ss_pred             cccccccccccchHHHHHHHHhh
Q 048459           25 YYCDYCGICRSKKSLILSHIASH   47 (362)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~H~~~h   47 (362)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999865

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.008  Score=57.51  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=12.4

Q ss_pred             cCCccCCchhccChhHHHHHHHHhc
Q 048459          125 KCPIENCNREFTIQGNMKRHVKELH  149 (362)
Q Consensus       125 ~C~~~~C~~~f~~~~~l~~H~~~~h  149 (362)
                      .|..  |...|.....|.+|++..|
T Consensus       184 ~C~~--C~~~fld~~el~rH~~~~h  206 (669)
T KOG2231|consen  184 LCKF--CHERFLDDDELYRHLRFDH  206 (669)
T ss_pred             cchh--hhhhhccHHHHHHhhccce
Confidence            4544  5555555555555555433

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.48  E-value=0.0023  Score=32.80  Aligned_cols=24  Identities=38%  Similarity=0.696  Sum_probs=19.8

Q ss_pred             cccccccccccchHHHHHHHHhhcc
Q 048459           25 YYCDYCGICRSKKSLILSHIASHHK   49 (362)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~H~~~h~~   49 (362)
                      |+|..|+.... +..|.+|++.+++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            78999999998 9999999998764

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.47  E-value=0.0012  Score=34.27  Aligned_cols=22  Identities=36%  Similarity=0.650  Sum_probs=14.9

Q ss_pred             ccccccccccCChhHHHHHHHh
Q 048459           67 NTCEECGASFKKPAYLKQHMLS   88 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~   88 (362)
                      |.|.+|++.|.+...|+.|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4567777777777777777654

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.99  E-value=0.004  Score=49.59  Aligned_cols=83  Identities=20%  Similarity=0.463  Sum_probs=55.9

Q ss_pred             CCCCCcccccc--ccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHh-c------
Q 048459           19 SRDVRRYYCDY--CGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLS-H------   89 (362)
Q Consensus        19 ~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h------   89 (362)
                      ......|.|++  |-..|.....++.|...-|+.                 .|.+|.+.|.+...|..|+.- |      
T Consensus        74 ~~~~~~~~cqvagc~~~~d~lD~~E~hY~~~h~~-----------------sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa  136 (253)
T KOG4173|consen   74 KPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGN-----------------SCSFCKRAFPTGHLLDAHILEWHDSLFQA  136 (253)
T ss_pred             ccccccccccccchHHHHhhhhhHHHhhhhcccc-----------------hhHHHHHhCCchhhhhHHHHHHHHHHHHH
Confidence            34455688887  888888888888888766663                 588888888888888888643 3      


Q ss_pred             ---cCCCCeecccccccccccChhHHHHHHHH
Q 048459           90 ---LLERPFRCSVDDCHASYRRKDHLTRHLLR  118 (362)
Q Consensus        90 ---~~~~~~~C~~~~C~~~f~~~~~l~~H~~~  118 (362)
                         .|..-|.|-+.+|+..|.+...-..|+-.
T Consensus       137 ~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~  168 (253)
T KOG4173|consen  137 LVERGQDMYQCLVEGCTEKFKTSRDRKDHMIR  168 (253)
T ss_pred             HHHcCccHHHHHHHhhhhhhhhhhhhhhHHHH
Confidence               22334566555566666555555555543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.86  E-value=0.0022  Score=33.96  Aligned_cols=23  Identities=30%  Similarity=0.699  Sum_probs=20.6

Q ss_pred             ccccccccccccchHHHHHHHHh
Q 048459           24 RYYCDYCGICRSKKSLILSHIAS   46 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~   46 (362)
                      .|.|..|++.|.+...|..|++.
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCCcccCCCCcCCHHHHHHHHcc
Confidence            48899999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.83  E-value=0.014  Score=35.35  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=25.9

Q ss_pred             CCCCCCCccccccccccccchHHHHHHHHhhccccc
Q 048459           17 PKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDE   52 (362)
Q Consensus        17 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   52 (362)
                      +....+.|-.|++|+..+....+|++|+..+|..++
T Consensus        17 ~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   17 SKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             HhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            355677889999999999999999999998887653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.68  E-value=0.0038  Score=31.97  Aligned_cols=17  Identities=47%  Similarity=0.698  Sum_probs=7.6

Q ss_pred             cCccccccCchhHHHHHH
Q 048459          259 KGCLLSFSTNSNLRQHVK  276 (362)
Q Consensus       259 ~~C~~~f~~~~~L~~H~~  276 (362)
                      +.|+.... ...|.+|++
T Consensus         4 ~~C~y~t~-~~~l~~H~~   20 (24)
T PF13909_consen    4 PHCSYSTS-KSNLKRHLK   20 (24)
T ss_dssp             SSSS-EES-HHHHHHHHH
T ss_pred             CCCCCcCC-HHHHHHHHH
Confidence            33554444 445555544

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.36  E-value=0.021  Score=45.65  Aligned_cols=99  Identities=22%  Similarity=0.416  Sum_probs=72.2

Q ss_pred             CCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCcccchhHHH
Q 048459          160 DQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIK  239 (362)
Q Consensus       160 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~~~~~l~  239 (362)
                      ....|.|++.||-..|.+...+..|-.+-++       -.|..|.+.|.+.--|..|+..-|..|             + 
T Consensus        76 ~~~~~~cqvagc~~~~d~lD~~E~hY~~~h~-------~sCs~C~r~~Pt~hLLd~HI~E~HDs~-------------F-  134 (253)
T KOG4173|consen   76 RVPAFACQVAGCCQVFDALDDYEHHYHTLHG-------NSCSFCKRAFPTGHLLDAHILEWHDSL-------------F-  134 (253)
T ss_pred             ccccccccccchHHHHhhhhhHHHhhhhccc-------chhHHHHHhCCchhhhhHHHHHHHHHH-------------H-
Confidence            4466899999999999999888888765443       267889999999999999987744211             0 


Q ss_pred             HHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCc
Q 048459          240 RHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIK  283 (362)
Q Consensus       240 ~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  283 (362)
                       -...-.|   +..|.|-..+|+-.|.+...-..|+...|.-..
T Consensus       135 -qa~veRG---~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk~Pa  174 (253)
T KOG4173|consen  135 -QALVERG---QDMYQCLVEGCTEKFKTSRDRKDHMIRMHKYPA  174 (253)
T ss_pred             -HHHHHcC---ccHHHHHHHhhhhhhhhhhhhhhHHHHhccCCc
Confidence             1111222   256888888899889888888888877775433

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.31  E-value=0.0028  Score=59.37  Aligned_cols=150  Identities=25%  Similarity=0.385  Sum_probs=108.6

Q ss_pred             ccccccccccccCChhHHHHHHH--hccCC--CCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChh
Q 048459           65 QCNTCEECGASFKKPAYLKQHML--SHLLE--RPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQG  139 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~  139 (362)
                      .++.|..|...|.....|.+|.+  .|.++  .++.|++..|++.|.....+..|...|.. .++.+....+...+....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            46899999999999999999999  89999  99999722499999999999999999998 667777656666655544


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhh
Q 048459          140 NMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRS  219 (362)
Q Consensus       140 ~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  219 (362)
                      .-..+......     ........+.+....|...+.....+..|...+.......  +.+..|.+.|.....+..|++.
T Consensus       368 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  440 (467)
T COG5048         368 NNEPPQSLQQY-----KDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYN--CKNPPCSKSFNRHYNLIPHKKI  440 (467)
T ss_pred             CCCCccchhhc-----cCccCCccccccccchhhhhccccccccccccccccCCcC--CCCCcchhhccCcccccccccc
Confidence            32211110000     0011334556665567788888888888887777655443  4558888888888888888887


Q ss_pred             hC
Q 048459          220 CH  221 (362)
Q Consensus       220 ~h  221 (362)
                      +.
T Consensus       441 ~~  442 (467)
T COG5048         441 HT  442 (467)
T ss_pred             cc
Confidence            43

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=95.19  E-value=0.071  Score=46.23  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=18.0

Q ss_pred             cccccccccc--chHHHHHHHHhhccc
Q 048459           26 YCDYCGICRS--KKSLILSHIASHHKE   50 (362)
Q Consensus        26 ~C~~C~~~f~--~~~~l~~H~~~h~~~   50 (362)
                      .|-.|.+.|.  ....+..|+.+-|..
T Consensus        30 ~C~~C~e~f~~peq~~~l~Hl~~ehki   56 (423)
T KOG2482|consen   30 KCLKCDEVFIFPEQKDCLAHLMSEHKI   56 (423)
T ss_pred             eeeehhhcccCcchHHHHHHHHhhccE
Confidence            4999988775  444588888776654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.04  E-value=0.012  Score=31.16  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=17.9

Q ss_pred             cccCCCCCCceeccchhhhhhhhc
Q 048459          285 FACSFFGCGMRFAFKHVRDNHEKS  308 (362)
Q Consensus       285 ~~C~~~~C~~~f~~~~~l~~H~~~  308 (362)
                      |-|.+  |++.|.+...|..|+++
T Consensus         2 ~~C~~--C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDA--CDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTT--TTBBBSSHHHHHCCTTS
T ss_pred             CCccc--CCCCcCCHHHHHHHHcc
Confidence            67888  88888888888888875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=94.90  E-value=0.14  Score=44.47  Aligned_cols=143  Identities=20%  Similarity=0.148  Sum_probs=86.6

Q ss_pred             CCCccccCCCCcchhc-cCHHHHHhHHhhccCcCC---c---------------ccccccCCcCccCCCHHHHHHHHhhh
Q 048459          160 DQKQYICQEIGCGKVF-KYASKLRQHEDSHVNLDS---V---------------EAFCSEPGCMKYFTNKQCLEAHIRSC  220 (362)
Q Consensus       160 ~~~~~~C~~~~C~~~f-~~~~~l~~H~~~h~~~~~---~---------------~~~~~C~~C~~~f~~~~~l~~H~~~~  220 (362)
                      ......|-.  |...+ .+++.+..|+-.-++...   .               -..+.|-.|.+.|..+..|+.||+..
T Consensus       141 t~fslqClF--Cn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  141 TIFSLQCLF--CNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKK  218 (423)
T ss_pred             CeeeeEEEE--ecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhc
Confidence            345567888  88765 456677777754433211   0               11246788999999999999999874


Q ss_pred             C-CC--cCCCCCCccc-------chhHHHHHH----Hhh--ccC----------CC--CCceeecccCccccccCchhHH
Q 048459          221 H-QY--IPCEICGSMQ-------LKKNIKRHV----RTH--EAR----------DL--SERIKCQFKGCLLSFSTNSNLR  272 (362)
Q Consensus       221 h-~~--~~C~~C~~~~-------~~~~l~~H~----~~h--~~~----------~~--~~~~~C~~~~C~~~f~~~~~L~  272 (362)
                      . ..  -+-..-.+.|       .++....|.    .+-  .++          ..  .....|-+  |.....+...|.
T Consensus       219 ~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLf--C~~~~en~~~l~  296 (423)
T KOG2482|consen  219 RHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLF--CTNFYENPVFLF  296 (423)
T ss_pred             cCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEe--eccchhhHHHHH
Confidence            2 21  0111111111       011111111    111  111          00  12269977  999999999999


Q ss_pred             HHHHhhcCCC--------------------------cccccCCCCCCceeccchhhhhhhhc
Q 048459          273 QHVKAVHYEI--------------------------KPFACSFFGCGMRFAFKHVRDNHEKS  308 (362)
Q Consensus       273 ~H~~~~H~~~--------------------------~~~~C~~~~C~~~f~~~~~l~~H~~~  308 (362)
                      .||+.+|.-+                          ..-.|..  |..+|.....|..||.-
T Consensus       297 eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~--cd~~F~~e~~l~~hm~e  356 (423)
T KOG2482|consen  297 EHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAE--CDLSFWKEPGLLIHMVE  356 (423)
T ss_pred             HHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhcccccc--ccccccCcchhhhhccc
Confidence            9999998310                          1134666  99999999999999984

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.75  E-value=0.03  Score=28.94  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=18.8

Q ss_pred             ccccccccccccchHHHHHHHHh
Q 048459           24 RYYCDYCGICRSKKSLILSHIAS   46 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~   46 (362)
                      ...|+.||+.| ..+.|..|+..
T Consensus         2 l~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    2 LVPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CCcCCCCCCEE-CHHHHHHHHHh
Confidence            36899999999 77899999864

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=94.69  E-value=0.17  Score=44.88  Aligned_cols=73  Identities=16%  Similarity=0.187  Sum_probs=50.8

Q ss_pred             cccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCcccchhHHHHHHHhhccCCCCCceeecccCcc---ccccCchhHHHH
Q 048459          198 CSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCL---LSFSTNSNLRQH  274 (362)
Q Consensus       198 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~~~~~l~~H~~~h~~~~~~~~~~C~~~~C~---~~f~~~~~L~~H  274 (362)
                      -.|-.|++.+.+...-..||..+|+.|.-.+ ........|..-+....+    ..|.|-+  |+   +.|.+....+.|
T Consensus       167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdr-eYL~D~~GLl~YLgeKV~----~~~~CL~--CN~~~~~f~sleavr~H  239 (390)
T KOG2785|consen  167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDR-EYLTDEKGLLKYLGEKVG----IGFICLF--CNELGRPFSSLEAVRAH  239 (390)
T ss_pred             cceeecCCCcccHHHHHHHHhhccCCcCCch-HhhhchhHHHHHHHHHhc----cCceEEE--eccccCcccccHHHHHH
Confidence            3577899999999999999999898654221 011123344444433333    4589977  99   999999999999


Q ss_pred             HHh
Q 048459          275 VKA  277 (362)
Q Consensus       275 ~~~  277 (362)
                      |..
T Consensus       240 M~~  242 (390)
T KOG2785|consen  240 MRD  242 (390)
T ss_pred             Hhh
Confidence            974

>PRK04860 hypothetical protein; Provisional

Probab=94.65  E-value=0.029  Score=44.19  Aligned_cols=40  Identities=28%  Similarity=0.564  Sum_probs=33.6

Q ss_pred             ceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchh
Q 048459          253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHV  301 (362)
Q Consensus       253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  301 (362)
                      +|.|  . |+.   ....+.+|.+ +|+++++|.|..  |+..|.....
T Consensus       119 ~Y~C--~-C~~---~~~~~rrH~r-i~~g~~~YrC~~--C~~~l~~~~~  158 (160)
T PRK04860        119 PYRC--K-CQE---HQLTVRRHNR-VVRGEAVYRCRR--CGETLVFKGE  158 (160)
T ss_pred             EEEc--C-CCC---eeCHHHHHHH-HhcCCccEECCC--CCceeEEecc
Confidence            4888  6 886   6778899998 999999999999  9999876544

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.43  E-value=0.042  Score=28.38  Aligned_cols=18  Identities=33%  Similarity=0.824  Sum_probs=8.6

Q ss_pred             CCCCCCcccchhHHHHHH
Q 048459          225 PCEICGSMQLKKNIKRHV  242 (362)
Q Consensus       225 ~C~~C~~~~~~~~l~~H~  242 (362)
                      +|+.||+.|....|..|+
T Consensus         4 ~C~~CgR~F~~~~l~~H~   21 (25)
T PF13913_consen    4 PCPICGRKFNPDRLEKHE   21 (25)
T ss_pred             cCCCCCCEECHHHHHHHH
Confidence            344444444444444444

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.03  E-value=0.0095  Score=55.81  Aligned_cols=149  Identities=20%  Similarity=0.268  Sum_probs=109.4

Q ss_pred             CccccccccccccchHHHHHHHH--hhccccccccCCCCCcCCCcccccc--ccccccCChhHHHHHHHhccCCCCeecc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIA--SHHKEDEERVDGDGETKGVQCNTCE--ECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~--~h~~~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      .++.|..|...|.....|.+|.+  .|..+.            .+++.|+  .|++.|.....+.+|...|.+..++.+.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGES------------LKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             cCCCCccccCCcccccccccccccccccccc------------CCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            57999999999999999999999  566651            1448899  8999999999999999999999988887


Q ss_pred             cccccccccChhHHH------HHHHHcCCCcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcc
Q 048459           99 VDDCHASYRRKDHLT------RHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCG  172 (362)
Q Consensus        99 ~~~C~~~f~~~~~l~------~H~~~h~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~  172 (362)
                      +..+...+.....-.      .+........+.+....|...+.....+..|...+-..        ....+.+..  |.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~~  425 (467)
T COG5048         356 LLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSF--------RPYNCKNPP--CS  425 (467)
T ss_pred             cccCccccccccCCCCccchhhccCccCCccccccccchhhhhcccccccccccccccc--------CCcCCCCCc--ch
Confidence            766766655443311      11112222566666666777777777777776632211        223455666  99


Q ss_pred             hhccCHHHHHhHHhhccCcCC
Q 048459          173 KVFKYASKLRQHEDSHVNLDS  193 (362)
Q Consensus       173 ~~f~~~~~l~~H~~~h~~~~~  193 (362)
                      ..|.....+..|++.+....+
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~  446 (467)
T COG5048         426 KSFNRHYNLIPHKKIHTNHAP  446 (467)
T ss_pred             hhccCcccccccccccccCCc
Confidence            999999999999988875443

>PRK04860 hypothetical protein; Provisional

Probab=93.92  E-value=0.029  Score=44.24  Aligned_cols=38  Identities=21%  Similarity=0.384  Sum_probs=27.9

Q ss_pred             cccccccccccCChhHHHHHHHhccCCCCeecccccccccccCh
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRK  109 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~  109 (362)
                      +|.|. |+.   ....+++|.++|+++++|.|..  |+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~--C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRR--CGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCC--CCceeEEe
Confidence            47887 876   5566788888888888888844  88776543

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.00  E-value=0.069  Score=30.05  Aligned_cols=24  Identities=17%  Similarity=0.630  Sum_probs=21.6

Q ss_pred             ccccccccccccchHHHHHHHHhh
Q 048459           24 RYYCDYCGICRSKKSLILSHIASH   47 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h   47 (362)
                      +|.|.+|++.|.+...+..|++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            589999999999999999998753

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=92.59  E-value=0.04  Score=56.31  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=15.3

Q ss_pred             ccccccccccCChhHHHHHHHh
Q 048459           67 NTCEECGASFKKPAYLKQHMLS   88 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~   88 (362)
                      |.|+.|+..|.....|..|||.
T Consensus       466 ~~cpkc~~~yk~a~~L~vhmRs  487 (1406)
T KOG1146|consen  466 LKCPKCNWHYKLAQTLGVHMRS  487 (1406)
T ss_pred             ccCCccchhhhhHHHhhhcccc
Confidence            6677777777777777777665

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.34  E-value=0.092  Score=29.53  Aligned_cols=22  Identities=18%  Similarity=0.496  Sum_probs=18.0

Q ss_pred             ccccccccccCChhHHHHHHHh
Q 048459           67 NTCEECGASFKKPAYLKQHMLS   88 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~   88 (362)
                      |.|..|++.|.+...+..|+..
T Consensus         4 ~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        4 FYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             eEccccCCccCCHHHHHHHHCh
Confidence            7788888888888888888753

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=91.32  E-value=0.22  Score=44.15  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=27.2

Q ss_pred             CCCCCccccccccccccchHHHHHHHHhhccc
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      .....|=.|-+|++.+.+...-..||..+|+-
T Consensus       161 e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~Hgf  192 (390)
T KOG2785|consen  161 EDELIPTDCLFCDKKSKSLEENLKHMFKEHGF  192 (390)
T ss_pred             hcccCCcceeecCCCcccHHHHHHHHhhccCC
Confidence            34455678999999999999999999999885

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=90.00  E-value=0.11  Score=42.65  Aligned_cols=48  Identities=29%  Similarity=0.420  Sum_probs=38.5

Q ss_pred             eeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          254 IKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       254 ~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      --|++  |++.|.....|.+|+++.|     |+|-+  |.|..-+--.|..|--..|
T Consensus        11 pwcwy--cnrefddekiliqhqkakh-----fkchi--chkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   11 PWCWY--CNREFDDEKILIQHQKAKH-----FKCHI--CHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             ceeee--cccccchhhhhhhhhhhcc-----ceeee--ehhhhccCCCceeehhhhh
Confidence            35866  9999999999999988666     89999  9998888878877744333

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=88.71  E-value=0.26  Score=30.39  Aligned_cols=33  Identities=15%  Similarity=0.324  Sum_probs=28.5

Q ss_pred             CCCCCCccccccccccccchHHHHHHHHhhccc
Q 048459           18 KSRDVRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ...|+.-+.|+-||..|..+..+.+|+...|+-
T Consensus        11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~   43 (65)
T COG4049          11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGW   43 (65)
T ss_pred             ccCCceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence            445778899999999999999999999877763

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=88.41  E-value=1.5  Score=32.15  Aligned_cols=28  Identities=25%  Similarity=0.458  Sum_probs=21.9

Q ss_pred             CCCccccccccccccchHHHHHHHHhhcc
Q 048459           21 DVRRYYCDYCGICRSKKSLILSHIASHHK   49 (362)
Q Consensus        21 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~   49 (362)
                      .-+...|..|+..... +++..|++..|.
T Consensus         8 ~~~vlIC~~C~~av~~-~~v~~HL~~~H~   35 (109)
T PF12013_consen    8 EYRVLICRQCQYAVQP-SEVESHLRKRHH   35 (109)
T ss_pred             cCCEEEeCCCCcccCc-hHHHHHHHHhcc
Confidence            3456789999998877 899999995543

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=88.26  E-value=0.14  Score=52.53  Aligned_cols=69  Identities=19%  Similarity=0.290  Sum_probs=40.7

Q ss_pred             ccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHH
Q 048459           67 NTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHV  145 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~  145 (362)
                      |.|.+|...|.....|..|.+.             |.+.+.....+.-|+..+.. .+| |.+  |...|.....|..|+
T Consensus      1285 ~~~~~~~~~~~~~~~l~~~~~k-------------~~~~~~~~~~~~~~~l~~~d~~~~-c~~--c~~~~~~~~alqihm 1348 (1406)
T KOG1146|consen 1285 YLCRQCKMAFDGEAPLTAHQRK-------------FCFAGRGSGGSMPPPLRVPDCTYH-CLA--CEVLLSGREALQIHM 1348 (1406)
T ss_pred             HHHHHHHhhhcchhHHHHHHHH-------------HHhccCccccCCCCcccCcccccc-chH--HHhhcchhHHHHHHH
Confidence            5555555555555555555410             22233333333334444444 445 888  999999999999998


Q ss_pred             HHhcCC
Q 048459          146 KELHHE  151 (362)
Q Consensus       146 ~~~h~~  151 (362)
                      +..+..
T Consensus      1349 ~~~~~~ 1354 (1406)
T KOG1146|consen 1349 RSSAHR 1354 (1406)
T ss_pred             HHhhhc
Confidence            877654

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=87.20  E-value=0.28  Score=30.28  Aligned_cols=27  Identities=22%  Similarity=0.533  Sum_probs=19.6

Q ss_pred             CCCccccccccccccCChhHHHHHHHh
Q 048459           62 KGVQCNTCEECGASFKKPAYLKQHMLS   88 (362)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~   88 (362)
                      +|+..+.||-|++.|....++.+|...
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhH
Confidence            345557788888888888888888654

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=86.64  E-value=0.21  Score=41.04  Aligned_cols=41  Identities=29%  Similarity=0.605  Sum_probs=18.7

Q ss_pred             ccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHH
Q 048459           69 CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRH  115 (362)
Q Consensus        69 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H  115 (362)
                      |..|++.|.....|.+|++..    -|+|.+  |.+...+-..|..|
T Consensus        13 cwycnrefddekiliqhqkak----hfkchi--chkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKAK----HFKCHI--CHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhhhc----cceeee--ehhhhccCCCceee
Confidence            455555555555555554332    245544  54444443444333

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=85.54  E-value=0.17  Score=42.25  Aligned_cols=58  Identities=16%  Similarity=0.157  Sum_probs=30.9

Q ss_pred             CCccccccccccccchHHHHHHHHhhcc-ccccccCCCCCcCCCccccccccccccCCh
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHK-EDEERVDGDGETKGVQCNTCEECGASFKKP   79 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~   79 (362)
                      .|.+.|++|+..|.+..-.....+.-.. .+....-....+---....||.||.+|...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            4679999999999998655444443211 111111111111111224688888876543

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=84.71  E-value=2  Score=31.59  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=14.0

Q ss_pred             ccCCcCccCCCHHHHHHHHhhhCC
Q 048459          199 SEPGCMKYFTNKQCLEAHIRSCHQ  222 (362)
Q Consensus       199 ~C~~C~~~f~~~~~l~~H~~~~h~  222 (362)
                      .|..|+..... +++..|++..|.
T Consensus        13 IC~~C~~av~~-~~v~~HL~~~H~   35 (109)
T PF12013_consen   13 ICRQCQYAVQP-SEVESHLRKRHH   35 (109)
T ss_pred             EeCCCCcccCc-hHHHHHHHHhcc
Confidence            45666666554 667777775443

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=82.00  E-value=0.72  Score=38.53  Aligned_cols=46  Identities=22%  Similarity=0.583  Sum_probs=30.1

Q ss_pred             cCCCCCCcccchhHHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHH
Q 048459          224 IPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVK  276 (362)
Q Consensus       224 ~~C~~C~~~~~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~  276 (362)
                      |.|.+||....+..+..|+-..++.    .|.|  -.|++.|.. .++..|..
T Consensus         4 FtCnvCgEsvKKp~vekH~srCrn~----~fSC--IDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGESVKKPQVEKHMSRCRNA----YFSC--IDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             EehhhhhhhccccchHHHHHhccCC----eeEE--eeccccccc-chhhhhhh
Confidence            4566677666666666676666652    4777  667777776 55667765

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=81.40  E-value=0.77  Score=33.55  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=15.1

Q ss_pred             ccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCccc
Q 048459          199 SEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQ  233 (362)
Q Consensus       199 ~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~  233 (362)
                      .|+.||+.|....         ..|..|+.||..|
T Consensus        11 ~Cp~CG~kFYDLn---------k~PivCP~CG~~~   36 (108)
T PF09538_consen   11 TCPSCGAKFYDLN---------KDPIVCPKCGTEF   36 (108)
T ss_pred             cCCCCcchhccCC---------CCCccCCCCCCcc
Confidence            4566666665443         3455666666554

The function of members of this family is unknown.

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=80.59  E-value=1.1  Score=37.54  Aligned_cols=50  Identities=28%  Similarity=0.462  Sum_probs=39.3

Q ss_pred             ccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC
Q 048459           67 NTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  121 (362)
                      |.|.+||.... +..+.+|+..-++ ..|.|  -+|++.|.. .++..|..--+.
T Consensus         4 FtCnvCgEsvK-Kp~vekH~srCrn-~~fSC--IDC~k~F~~-~sYknH~kCITE   53 (276)
T KOG2186|consen    4 FTCNVCGESVK-KPQVEKHMSRCRN-AYFSC--IDCGKTFER-VSYKNHTKCITE   53 (276)
T ss_pred             Eehhhhhhhcc-ccchHHHHHhccC-CeeEE--eeccccccc-chhhhhhhhcch
Confidence            88999999876 4668889987766 67999  569999988 778888765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	362
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		2e-15
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		2e-08
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		2e-04
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-14
1tf3_A	92	Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures		1e-10
1tf3_A	92	Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures		1e-04
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		9e-10
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		7e-07
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		9e-09
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		1e-07
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		1e-05
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		3e-08
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		4e-08
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		5e-08
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		6e-08
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		8e-08
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		6e-07
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		6e-06
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		3e-04
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		2e-06
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		1e-04
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		3e-06
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		7e-04
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		3e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		8e-04
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		7e-06
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		9e-06
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		1e-05
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		1e-04
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-05
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		2e-04
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		1e-05
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		2e-04
1bbo_A	57	High-Resolution Solution Structure Of The Double Cy		4e-05
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		8e-05
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		3e-04
2epa_A	72	Solution Structure Of The First And Second Zf-C2h2		4e-04

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIE 129
           +CGA++ K   L+ H+  H  E+PF C  + C   +    HLTRH L H G K F C  +
Sbjct: 19  DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 130 NCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
            C+  FT + NMK+H    H+             Y+C    CGK FK  ++L+ H+ SH 
Sbjct: 79  GCDLRFTTKANMKKHFNRFHNIKICV--------YVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 190 NLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCE 227
                E  C   GC K F+    L+ H +  H   PC+
Sbjct: 131 QQLPYE--CPHEGCDKRFSLPSRLKRHEKV-HAGYPCK 165

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 86/220 (39%), Gaps = 41/220 (18%)
Query: 90  LLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKEL 148
           ++ + + CS  DC A+Y +   L  HL +H G K F C  E C + FT   ++ RH   L
Sbjct: 8   VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH--SL 65
Query: 149 HHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFT 208
            H G        +K + C   GC   F   + +++H +   N+      C    C K F 
Sbjct: 66  THTG--------EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFK 117
Query: 209 NKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTN 268
               L+ H  S  Q +P E                            C  +GC   FS  
Sbjct: 118 KHNQLKVHQFSHTQQLPYE----------------------------CPHEGCDKRFSLP 149
Query: 269 SNLRQH--VKAVHYEIKPFACSFFGCGMRFAFKHVRDNHE 306
           S L++H  V A +   K  +CSF G       KHV + H+
Sbjct: 150 SRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 9/151 (5%)
Query: 162 KQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAH--IRS 219
           K+YIC    CG  +    KL+ H   H         C E GC K FT+   L  H    +
Sbjct: 11  KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFP--CKEEGCEKGFTSLHHLTRHSLTHT 68
Query: 220 CHQYIPCEICG---SMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVK 276
             +   C+  G       K N+K+H        +   + C F+ C  +F  ++ L+ H +
Sbjct: 69  GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYV-CHFENCGKAFKKHNQLKVH-Q 126
Query: 277 AVHYEIKPFACSFFGCGMRFAFKHVRDNHEK 307
             H +  P+ C   GC  RF+       HEK
Sbjct: 127 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 157

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 90/193 (46%), Gaps = 24/193 (12%)
Query: 63  GVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG- 121
           G +   C ECG SF +  +L +H  +H  E+P++C   +C  S+  K  LTRH   H G 
Sbjct: 18  GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKC--PECGKSFSDKKDLTRHQRTHTGE 75
Query: 122 KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKL 181
           K +KCP   C + F+ + N++ H +         T +G+ K Y C E  CGK F   + L
Sbjct: 76  KPYKCP--ECGKSFSQRANLRAHQR---------THTGE-KPYACPE--CGKSFSQLAHL 121
Query: 182 RQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIP--CEICG-SMQLKKNI 238
           R H+ +H      +     P C K F+ +  L  H R+     P  C  CG S   +  +
Sbjct: 122 RAHQRTHTGEKPYKC----PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL 177
Query: 239 KRHVRTHEARDLS 251
             H RTH  +  S
Sbjct: 178 NVHQRTHTGKKTS 190

>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIE 129
           +CGA++ K   L+ H+  H  E+PF C  + C   +    HLTRH L H G K F C  +
Sbjct: 10  DCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 130 NCNREFTIQGNMKRHVKELH 149
            C+  FT + NMK+H    H
Sbjct: 70  GCDLRFTTKANMKKHFNRFH 89

>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 97  CSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTS 155
           CS  DC A+Y +   L  HL +H G K F C  E C + FT   ++ RH   L H G   
Sbjct: 6   CSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH--SLTHTG--- 60
Query: 156 TDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNL 191
                +K + C   GC   F   + +++H +   N+
Sbjct: 61  -----EKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 91

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 61  TKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQ 120
           T G + + C ECG +F + + LK+H L H  E+PF+C+ + C   +    +L  H+  H 
Sbjct: 29  THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT 88
Query: 121 G-KLFKCPIENCNREFTIQGNMKRHV 145
           G + + CP + CN++F    N+K H+
Sbjct: 89  GDRPYVCPFDGCNKKFAQSTNLKSHI 114

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 198 CSEPGCMKYFTNKQCLEAHIRSCHQYIP----CEICGSMQLKKN-IKRHVRTHEARDLSE 252
           C   GC K F +   +  H+   H + P    C  CG   ++ + +KRH   H      +
Sbjct: 8   CPHKGCTKMFRDNSAMRKHL---HTHGPRVHVCAECGKAFVESSKLKRHQLVHTG---EK 61
Query: 253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFA 297
             +C F+GC   FS + NLR HV+ +H   +P+ C F GC  +FA
Sbjct: 62  PFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFA 105

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 76  FKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNRE 134
           FK    L  HM  H  E+P +C+ + C  SY R ++L  HL  H G K + C  E C++ 
Sbjct: 49  FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 135 FTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQH 184
           F+   +  +H    H          ++K Y+C+  GC K +   S LR+H
Sbjct: 109 FSNASDRAKHQNRTH---------SNEKPYVCKLPGCTKRYTDPSSLRKH 149

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 112 LTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIG 170
           L  H+ RH G K  KC  E C + ++   N+K H++   H G        +K Y+C+  G
Sbjct: 55  LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS--HTG--------EKPYMCEHEG 104
Query: 171 CGKVFKYASKLRQHED-SHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCH 221
           C K F  AS   +H++ +H N       C  PGC K +T+   L  H+++ H
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKPY--VCKLPGCTKRYTDPSSLRKHVKTVH 154

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 166 CQEIGCGKVFKYASKLRQHEDS-HVNLDSVEAFCSEPGC---MKYFTNKQCLEAHIRSCH 221
           C+  GC + F    +L  H +S H++ +  E  C   GC   ++ F  +  L  H+R   
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 222 QYIP--CEICG---SMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVK 276
              P  C   G   S    +N+K H+R+H      +   C+ +GC  +FS  S+  +H  
Sbjct: 64  GEKPHKCTFEGCRKSYSRLENLKTHLRSHTG---EKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 277 AVHYEIKPFACSFFGCGMRFA-----FKHVRDNH 305
             H   KP+ C   GC  R+       KHV+  H
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 62  KGVQCNTCE--ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRH 119
           K    +TC+   CG ++ K ++LK H+ +H  E+P+ C  D C   + R D LTRH  +H
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 120 QG-KLFKCPIENCNREFTIQGNMKRHVK 146
            G + F+C  + C+R F+   ++  H+K
Sbjct: 61  TGHRPFQC--QKCDRAFSRSDHLALHMK 86

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 72  CGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIEN 130
           CG ++ K ++LK H+ +H  E+P+ C  D C   + R D LTRH  +H G + F+C  + 
Sbjct: 14  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QK 71
Query: 131 CNREFTIQGNMKRHVK 146
           C+R F+   ++  H+K
Sbjct: 72  CDRAFSRSDHLALHMK 87

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Query: 72  CGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIEN 130
           C   + K ++L+ H   H  E+P++C   DC   + R D L RH  RH G K F+C  + 
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--KT 71
Query: 131 CNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSH 188
           C R+F+   ++K H         T T +G+ K + C+   C K F  + +L +H + H
Sbjct: 72  CQRKFSRSDHLKTH---------TRTHTGE-KPFSCRWPSCQKKFARSDELVRHHNMH 119

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 72  CGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIEN 130
           C   + K ++LK H+ +H  E+P++C+ + C   + R D LTRH  +H G K F+C +  
Sbjct: 23  CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV-- 80
Query: 131 CNREFTIQGNMKRHVK 146
           CNR F+   ++  H+K
Sbjct: 81  CNRSFSRSDHLALHMK 96

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 61  TKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQ 120
           + G     CE CG  F+   +L +H LSH  E+P+ C V  C   ++RKD ++ H+  H 
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHD 59
Query: 121 GKLFKCPI-ENCNREFTIQGNMKRHVKELH 149
           G + K  I ++C + F+   ++  H+K++H
Sbjct: 60  GSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 16/98 (16%)
Query: 25  YYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQ 84
           Y C  CG   S+ S +  H  +H               G +   C ECG SF + + L++
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTH--------------TGEKPYKCPECGKSFSQSSDLQK 50
Query: 85  HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGK 122
           H  +H  E+P++C   +C  S+ R DHL+RH   HQ K
Sbjct: 51  HQRTHTGEKPYKC--PECGKSFSRSDHLSRHQRTHQNK 86

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 69  CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP 127
           C ECG SF + + L++H  +H  E+P++C   +C  S+ +   L +H   H G K +KCP
Sbjct: 7   CPECGKSFSQSSNLQKHQRTHTGEKPYKC--PECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 128 IENCNREFTIQGNMKRHVK 146
              C + F+   ++ RH +
Sbjct: 65  --ECGKSFSRSDHLSRHQR 81

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 17/101 (16%)
Query: 91  LERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELH 149
           +E+P++C   +C  S+ +  +L +H   H G K +KCP   C + F+   ++++H +   
Sbjct: 1   MEKPYKC--PECGKSFSQSSNLQKHQRTHTGEKPYKCP--ECGKSFSQSSDLQKHQR--- 53
Query: 150 HEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVN 190
                 T +G+ K Y C E  CGK F  +  L +H+ +H N
Sbjct: 54  ------THTGE-KPYKCPE--CGKSFSRSDHLSRHQRTHQN 85

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 70  EEC---GASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFK 125
           EEC   G SFK    L  H+  H  E+PF C    C   + R ++L  H   H G K FK
Sbjct: 63  EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 126 CPIENCNREFTIQGNMKRHVKELHHEGTTSTDSG 159
           C  E C+R F    + K+H+  +H    +   SG
Sbjct: 123 CEFEGCDRRFANSSDRKKHM-HVHTSDKSGPSSG 155

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 231 SMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFF 290
           S + K  +  H+R H      +   C F GC   F+ + NL+ H K  H   KPF C F 
Sbjct: 71  SFKAKYKLVNHIRVHTGE---KPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFE 126
Query: 291 GCGMRFAFKHVRDNHEKSGHHVYSS 315
           GC  RFA    R  H     HV++S
Sbjct: 127 GCDRRFANSSDRKKH----MHVHTS 147

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 70  EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI 128
           E C   F + A L +H+  H  ++PF+C +  C  ++ R DHLT H+  H G K F C I
Sbjct: 10  ESCDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 129 ENCNREFTIQGNMKRHVK 146
             C R+F      KRH K
Sbjct: 68  --CGRKFARSDERKRHTK 83

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 91  LERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELH 149
           +ERP+ C V+ C   + R   LTRH+  H G K F+C I  C R F+   ++  H++   
Sbjct: 1   MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRT-- 56
Query: 150 HEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
           H G        +K + C    CG+ F  + + ++H   H+
Sbjct: 57  HTG--------EKPFACD--ICGRKFARSDERKRHTKIHL 86

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 70  EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI 128
           E C   F + A L +H+  H  ++PF+C +  C  ++ R DHLT H+  H G K F C I
Sbjct: 10  ESCDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 129 ENCNREFTIQGNMKRHVK 146
             C R+F      KRH K
Sbjct: 68  --CGRKFARSDERKRHTK 83

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 91  LERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELH 149
           +ERP+ C V+ C   + R   LTRH+  H G K F+C I  C R F+   ++  H++   
Sbjct: 1   MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRT-- 56
Query: 150 HEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
           H G        +K + C    CG+ F  + + ++H   H+
Sbjct: 57  HTG--------EKPFACD--ICGRKFARSDERKRHTKIHL 86

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 70  EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI 128
           E C   F +   L +H+  H  ++PF+C +  C  ++ R DHLT H+  H G K F C I
Sbjct: 10  ESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 129 ENCNREFTIQGNMKRHVK 146
             C R+F      KRH K
Sbjct: 68  --CGRKFARSDERKRHTK 83

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 70  EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI 128
           E C   F   + L +H+  H  ++PF+C +  C  ++ R DHLT H+  H G K F C I
Sbjct: 10  ESCDRRFSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 129 ENCNREFTIQGNMKRHVK 146
             C R+F      KRH K
Sbjct: 68  --CGRKFARSDERKRHTK 83

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 70  EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI 128
           E C   F +   L +H+  H  ++PF+C +  C  ++ R DHLT H+  H G K F C I
Sbjct: 10  ESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 129 ENCNREFTIQGNMKRHVK 146
             C R+F      KRH K
Sbjct: 68  --CGRKFARSDERKRHTK 83

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 15/100 (15%)
Query: 91  LERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELH 149
           +ERP+ C V+ C   + R D LTRH+  H G K F+C I  C R F+   ++  H++   
Sbjct: 1   MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRT-- 56
Query: 150 HEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
           H G        +K + C    CG+ F  + + ++H   H+
Sbjct: 57  HTG--------EKPFACD--ICGRKFARSDERKRHTKIHL 86

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 70  EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI 128
           E C   F +   L +H+  H  ++PF+C +  C  ++ R DHLT H+  H G K F C I
Sbjct: 9   ESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI 66
Query: 129 ENCNREFTIQGNMKRHVK 146
             C R+F      KRH K
Sbjct: 67  --CGRKFARSDERKRHTK 82

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 92  ERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHH 150
           ERP+ C V+ C   + R D LTRH+  H G K F+C I  C R F+   ++  H++   H
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRT--H 56
Query: 151 EGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
            G        +K + C    CG+ F  + + ++H   H+
Sbjct: 57  TG--------EKPFACD--ICGRKFARSDERKRHTKIHL 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 70  EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI 128
           E C   F +   L +H+  H  ++PF+C +  C  ++ R DHLT H+  H G K F C I
Sbjct: 10  ESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 129 ENCNREFTIQGNMKRHVK 146
             C R+F      KRH K
Sbjct: 68  --CGRKFARSDERKRHTK 83

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 92  ERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHH 150
           ERP+ C V+ C   + R D LTRH+  H G K F+C I  C R F+   ++  H++   H
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRT--H 57
Query: 151 EGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHV 189
            G        +K + C    CG+ F  + + ++H   H+
Sbjct: 58  TG--------EKPFACD--ICGRKFARSDERKRHTKIHL 86

>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2 Zinc Finger From The Human Enhancer Binding Protein Mbp-1 Length = 57

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 69  CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHL 116
           CEECG   KKP+ LK+H+ +H   RP+ C+   C+ S++ K +LT+H+
Sbjct: 4   CEECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHM 49

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 225 PCEICGS-MQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIK 283
           P E C      K N+  H+R H  +   +  +C+   C+ +FS ++ L QH++  H   K
Sbjct: 8   PVESCDRRFSQKTNLDTHIRIHTGQ---KPFQCRI--CMRNFSQHTGLNQHIR-THTGEK 61
Query: 284 PFACSFFGCGMRFAFKHVRDNHEK 307
           PFAC    CG +FA  H RD H K
Sbjct: 62  PFACDI--CGRKFATLHTRDRHTK 83

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIE 129
           +CG SF   +   +HM  HL  RP+ C V  C   ++ K HL  H+  H G K ++C I 
Sbjct: 14  QCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECNI- 70
Query: 130 NCNREFTIQGNMKRHV 145
            C + F  + +  RHV
Sbjct: 71  -CAKRFMWRDSFHRHV 85

>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains From Human Krueppel-Like Factor 10 Length = 72

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 72  CGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRH 119
           CG ++ K ++LK H  +H  E+PF CS   C   + R D L+RH   H
Sbjct: 25  CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	362
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	6e-19
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-11
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-10
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	7e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-18
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-17
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-15
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-13
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-10
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-10
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	6e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-14
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	5e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	5e-14
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	6e-13
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	9e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	8e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-12
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	9e-12
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	4e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	7e-10
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-09
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	7e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-09
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-09
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	5e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	8e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-07
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-09
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-07
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	6e-07
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	6e-09
2epa_A	72	Krueppel-like factor 10; transforming growth facto	6e-08
2epa_A	72	Krueppel-like factor 10; transforming growth facto	8e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-09
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	5e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	6e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	7e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-05
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	9e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-05
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	4e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	6e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	7e-06
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	6e-05
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	1e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	3e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	5e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	5e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	7e-04
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	6e-04

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 81.9 bits (203), Expect = 6e-19
 Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 20/167 (11%)

Query: 25  YYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTC--EECGASFKKPAYL 82
              D C      +  ++ HI S H   E         K   C+          FK    L
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGER--------KEFVCHWGGCSRELRPFKAQYML 55

Query: 83  KQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNM 141
             HM  H  E+P +C+ + C  SY R ++L  HL  H G K + C  E C++ F+   + 
Sbjct: 56  VVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDR 115

Query: 142 KRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSH 188
            +H    H        S + K Y+C+  GC K +   S LR+H  + 
Sbjct: 116 AKHQNRTH--------SNE-KPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 55/193 (28%)

Query: 122 KLFKCPIENCNREFTIQGNMKRHVKELH-HEGTTSTDSGDQKQYICQEIGC---GKVFKY 177
              +   + C++EF  Q  +  H+   H H          +K+++C   GC    + FK 
Sbjct: 2   TDCRW--DGCSQEFDSQEQLVHHINSEHIHGE--------RKEFVCHWGGCSRELRPFKA 51

Query: 178 ASKLRQHEDSHVNLDSVEA--FCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLK 235
              L  H   H      E    C+  GC K ++         R  +              
Sbjct: 52  QYMLVVHMRRHTG----EKPHKCTFEGCRKSYS---------RLEN-------------- 84

Query: 236 KNIKRHVRTHEARDLSER-IKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGM 294
             +K H+R+H      E+   C+ +GC  +FS  S+  +H    H   KP+ C   GC  
Sbjct: 85  --LKTHLRSHTG----EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTK 138

Query: 295 RFAF-----KHVR 302
           R+       KHV+
Sbjct: 139 RYTDPSSLRKHVK 151

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 50/198 (25%), Positives = 70/198 (35%), Gaps = 54/198 (27%)

Query: 92  ERPFRCSVDDCHASYRRKDHLTRHLLR---HQG-KLFKCPIENCNRE---FTIQGNMKRH 144
           E   R   D C   +  ++ L  H+     H   K F C    C+RE   F  Q  +  H
Sbjct: 1   ETDCRW--DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58

Query: 145 VKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEA--FCSEPG 202
           ++   H G        +K + C   GC K +     L+ H  SH      E    C   G
Sbjct: 59  MRR--HTG--------EKPHKCTFEGCRKSYSRLENLKTHLRSHTG----EKPYMCEHEG 104

Query: 203 CMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSER-IKCQFKGC 261
           C K F+N      H                          RTH     +E+   C+  GC
Sbjct: 105 CSKAFSNASDRAKH------------------------QNRTH----SNEKPYVCKLPGC 136

Query: 262 LLSFSTNSNLRQHVKAVH 279
              ++  S+LR+HVK VH
Sbjct: 137 TKRYTDPSSLRKHVKTVH 154

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 19/125 (15%)

Query: 198 CSEPGCMKYFTNKQCLEAHIRSCHQYIP-----CEICGSMQLKK------NIKRHVRTHE 246
                C + F +++ L  HI S H +       C   G  +  +       +  H+R H 
Sbjct: 6   WDG--CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63

Query: 247 ARDLSER-IKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNH 305
                E+  KC F+GC  S+S   NL+ H++  H   KP+ C   GC   F+    R  H
Sbjct: 64  G----EKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKH 118

Query: 306 EKSGH 310
           +   H
Sbjct: 119 QNRTH 123

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 68  TCEE--CGASFKKPAYLKQHML-SHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG 121
            CE   C  +F   +   +H   +H  E+P+ C +  C   Y     L +H+    G
Sbjct: 99  MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 79.9 bits (198), Expect = 6e-18
 Identities = 55/188 (29%), Positives = 78/188 (41%), Gaps = 18/188 (9%)

Query: 65  QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KL 123
            C+   +CGA++ K   L+ H+  H  E+PF C  + C   +    HLTRH L H G K 
Sbjct: 14  ICSF-ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72

Query: 124 FKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQ 183
           F C  + C+  FT + NMK+H     H             Y+C    CGK FK  ++L+ 
Sbjct: 73  FTCDSDGCDLRFTTKANMKKH-FNRFHNIK-------ICVYVCHFENCGKAFKKHNQLKV 124

Query: 184 HEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRS---CHQYIP--CEICGSMQLKKNI 238
           H+ SH      E  C   GC K F+    L+ H +            C   G       +
Sbjct: 125 HQFSHTQQLPYE--CPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGK-TWTLYL 181

Query: 239 KRHVRTHE 246
           K     H+
Sbjct: 182 KHVAECHQ 189

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 76.9 bits (190), Expect = 6e-17
 Identities = 51/208 (24%), Positives = 75/208 (36%), Gaps = 29/208 (13%)

Query: 84  QHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMK 142
                 ++ + + CS  DC A+Y +   L  HL +H G K F C  E C + FT   ++ 
Sbjct: 2   GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61

Query: 143 RHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPG 202
           RH   L H G        +K + C   GC   F   + +++H +   N+      C    
Sbjct: 62  RH--SLTHTG--------EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFEN 111

Query: 203 CMKYFTNKQCLEAHIRS--------CHQYIPCEICG-SMQLKKNIKRHVRTHEARDLSER 253
           C K F     L+ H  S        C      E C     L   +KRH + H        
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPH----EGCDKRFSLPSRLKRHEKVHAGYPCK-- 165

Query: 254 IKCQFKGCLLSFSTNSNLRQHVKAVHYE 281
            K     C     T +   +HV   H +
Sbjct: 166 -KD--DSCSFVGKTWTLYLKHVAECHQD 190

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 25  YYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQ 84
                C    S    +++H+   H    E+ +     +      C   G SFK    L  
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE-----CPREGKSFKAKYKLVN 80

Query: 85  HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKR 143
           H+  H  E+PF C    C   + R ++L  H   H G K FKC  E C+R F    + K+
Sbjct: 81  HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140

Query: 144 H 144
           H
Sbjct: 141 H 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSV-------DDCHASYRRKDHLTRHLLRHQ 120
             + C  +F     L  H+    +  P + +             S++ K  L  H+  H 
Sbjct: 27  PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86

Query: 121 G-KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYAS 179
           G K F CP   C + F    N+K H +   H G        +K + C+  GC + F  +S
Sbjct: 87  GEKPFPCPFPGCGKIFARSENLKIHKRT--HTG--------EKPFKCEFEGCDRRFANSS 136

Query: 180 KLRQHEDSH 188
             ++H   H
Sbjct: 137 DRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 26/158 (16%)

Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-----KLFK 125
             G+S +              +         C  ++     L  H+              
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59

Query: 126 CPIENCNRE---FTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLR 182
           C  E C RE   F  +  +  H++   H G        +K + C   GCGK+F  +  L+
Sbjct: 60  CYWEECPREGKSFKAKYKLVNHIRV--HTG--------EKPFPCPFPGCGKIFARSENLK 109

Query: 183 QHEDSHVNLDSVEA--FCSEPGCMKYFTNKQCLEAHIR 218
            H+ +H    + E    C   GC + F N    + H+ 
Sbjct: 110 IHKRTH----TGEKPFKCEFEGCDRRFANSSDRKKHMH 143

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 44/190 (23%), Positives = 65/190 (34%), Gaps = 39/190 (20%)

Query: 101 DCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSG 159
              +S +            +         ++C+R F+    +  HV  + H G    ++ 
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHV-TMEHVGGPEQNNH 58

Query: 160 DQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRS 219
                 C     GK FK   KL  H   H         C  PGC K F          RS
Sbjct: 59  VCYWEECPR--EGKSFKAKYKLVNHIRVHTGEKPFP--CPFPGCGKIFA---------RS 105

Query: 220 CHQYIPCEICGSMQLKKNIKRHVRTHEARDLSER-IKCQFKGCLLSFSTNSNLRQHVKAV 278
                            N+K H RTH      E+  KC+F+GC   F+ +S+ ++H+  V
Sbjct: 106 E----------------NLKIHKRTHTG----EKPFKCEFEGCDRRFANSSDRKKHMH-V 144

Query: 279 HYEIKPFACS 288
           H   K    S
Sbjct: 145 HTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 24/149 (16%)

Query: 172 GKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCH---------- 221
           G        ++Q   S   +D  +    +  C + F+    L  H+   H          
Sbjct: 1   GSSGSSGQPIKQEL-SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59

Query: 222 -QYIPCEICG-SMQLKKNIKRHVRTHEARDLSER-IKCQFKGCLLSFSTNSNLRQHVKAV 278
             +  C   G S + K  +  H+R H      E+   C F GC   F+ + NL+ H +  
Sbjct: 60  CYWEECPREGKSFKAKYKLVNHIRVHT----GEKPFPCPFPGCGKIFARSENLKIHKR-T 114

Query: 279 HYEIKPFACSFFGCGMRFA-----FKHVR 302
           H   KPF C F GC  RFA      KH+ 
Sbjct: 115 HTGEKPFKCEFEGCDRRFANSSDRKKHMH 143

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 67.5 bits (166), Expect = 3e-14
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 15/124 (12%)

Query: 68  TCEE--CGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLF 124
            C    C   + K ++L+ H   H  E+P++C   DC   + R D L RH  RH G K F
Sbjct: 8   MCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67

Query: 125 KCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQH 184
           +C  + C R+F+   ++K H +   H G        +K + C+   C K F  + +L +H
Sbjct: 68  QC--KTCQRKFSRSDHLKTHTRT--HTG--------EKPFSCRWPSCQKKFARSDELVRH 115

Query: 185 EDSH 188
            + H
Sbjct: 116 HNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 15/128 (11%)

Query: 92  ERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHH 150
           +RPF C+   C+  Y +  HL  H  +H G K ++C  ++C R F+    +KRH +   H
Sbjct: 4   KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR--H 61

Query: 151 EGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNK 210
            G         K + C+   C + F  +  L+ H  +H         C  P C K F   
Sbjct: 62  TG--------VKPFQCKT--CQRKFSRSDHLKTHTRTHTGEKPFS--CRWPSCQKKFARS 109

Query: 211 QCLEAHIR 218
             L  H  
Sbjct: 110 DELVRHHN 117

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 14/119 (11%)

Query: 162 KQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCH 221
           + ++C   GC K +   S L+ H   H      +  C    C + F+    L+ H R  H
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQ--CDFKDCERRFSRSDQLKRHQRR-H 61

Query: 222 Q----YIPCEICG-SMQLKKNIKRHVRTHEARDLSER-IKCQFKGCLLSFSTNSNLRQH 274
                +  C+ C        ++K H RTH      E+   C++  C   F+ +  L +H
Sbjct: 62  TGVKPFQ-CKTCQRKFSRSDHLKTHTRTHTG----EKPFSCRWPSCQKKFARSDELVRH 115

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 67.2 bits (165), Expect = 5e-14
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC 126
             + C   F+  + +++H+ +H   R   C   +C  ++     L RH L H G K F+C
Sbjct: 9   PHKGCTKMFRDNSAMRKHLHTHG-PRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQC 65

Query: 127 PIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHED 186
             E C + F++  N++ HV+           +GD + Y+C   GC K F  ++ L+ H  
Sbjct: 66  TFEGCGKRFSLDFNLRTHVR---------IHTGD-RPYVCPFDGCNKKFAQSTNLKSHIL 115

Query: 187 SH 188
           +H
Sbjct: 116 TH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 36/139 (25%)

Query: 160 DQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRS 219
           + +   C   GC K+F+  S +R+H  +H                +     +C +A + S
Sbjct: 2   EPRTIACPHKGCTKMFRDNSAMRKHLHTH----------GP----RVHVCAECGKAFVES 47

Query: 220 CHQYIPCEICGSMQLKKNIKRHVRTHEARDLSER-IKCQFKGCLLSFSTNSNLRQHVKAV 278
                             +KRH   H      E+  +C F+GC   FS + NLR HV+ +
Sbjct: 48  SK----------------LKRHQLVHTG----EKPFQCTFEGCGKRFSLDFNLRTHVR-I 86

Query: 279 HYEIKPFACSFFGCGMRFA 297
           H   +P+ C F GC  +FA
Sbjct: 87  HTGDRPYVCPFDGCNKKFA 105

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG 121
           T E CG  F     L+ H+  H  +RP+ C  D C+  + +  +L  H+L H  
Sbjct: 66  TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 37/154 (24%), Positives = 51/154 (33%), Gaps = 39/154 (25%)

Query: 92  ERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKELHHE 151
            R   C    C   +R    + +HL  H  ++  C    C + F     +KRH  +L H 
Sbjct: 3   PRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVC--AECGKAFVESSKLKRH--QLVHT 58

Query: 152 GTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQ 211
           G        +K + C   GCGK F     LR H   H         C   GC K F    
Sbjct: 59  G--------EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV--CPFDGCNKKFA--- 105

Query: 212 CLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTH 245
                 +S +                +K H+ TH
Sbjct: 106 ------QSTN----------------LKSHILTH 117

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 63.4 bits (155), Expect = 6e-13
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC 126
               C   + K ++LK H+ +H  E+P++C+ + C   + R D LTRH  +H G K F+C
Sbjct: 19  DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC 78

Query: 127 PIENCNREFTIQGNMKRHVK 146
            +  CNR F+   ++  H+K
Sbjct: 79  GV--CNRSFSRSDHLALHMK 96

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 54.2 bits (131), Expect = 9e-10
 Identities = 29/118 (24%), Positives = 39/118 (33%), Gaps = 19/118 (16%)

Query: 74  ASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCN 132
            S        +        R   C    C   Y +  HL  HL  H G K +KC  E C+
Sbjct: 1   GSSGSSGPDLEK------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCD 54

Query: 133 REFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVN 190
             F     + RH ++  H G         K + C    C + F  +  L  H   H N
Sbjct: 55  WRFARSDELTRHYRK--HTG--------AKPFQCGV--CNRSFSRSDHLALHMKRHQN 100

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 230 GSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF 289
           GS           R H          C + GC   ++ +S+L+ H++  H   KP+ C++
Sbjct: 1   GSSGSSGPDLEKRRIH---------YCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTW 50

Query: 290 FGCGMRFA 297
            GC  RFA
Sbjct: 51  EGCDWRFA 58

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 152 GTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEA--FCSEPGCMKYFTN 209
           G++  D   ++ + C   GC KV+  +S L+ H  +H    + E    C+  GC   F  
Sbjct: 4   GSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTH----TGEKPYKCTWEGCDWRFAR 59

Query: 210 KQCLEAHIRSCHQYIP--CEICG-SMQLKKNIKRHVRTHE 246
              L  H R      P  C +C  S     ++  H++ H+
Sbjct: 60  SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC 126
               CG ++ K ++LK H+ +H  E+P+ C  D C   + R D LTRH  +H G + F+C
Sbjct: 9   DYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC 68

Query: 127 PIENCNREFTIQGNMKRHVK 146
               C+R F+   ++  H+K
Sbjct: 69  QK--CDRAFSRSDHLALHMK 86

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 46.0 bits (110), Expect = 6e-07
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 92  ERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHH 150
                C    C  +Y +  HL  HL  H G K + C  + C  +F     + RH ++  H
Sbjct: 3   TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK--H 60

Query: 151 EGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSH 188
            G         + + CQ+  C + F  +  L  H   H
Sbjct: 61  TG--------HRPFQCQK--CDRAFSRSDHLALHMKRH 88

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 59.6 bits (145), Expect = 9e-12
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC 126
             E CG +FKK   LK H  SH  + P+ C  + C   +     L RH   H G    K 
Sbjct: 5   HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64

Query: 127 PIENCNREFTIQGNMKRHVKELH 149
             ++C+          +HV E H
Sbjct: 65  --DSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 13/91 (14%)

Query: 95  FRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHEGT 153
           + C  ++C  ++++ + L  H   H     ++CP E C++ F++   +KRH K   H G 
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV--HAG- 58

Query: 154 TSTDSGDQKQYICQEIGCGKVFKYASKLRQH 184
                            C  V K  +   +H
Sbjct: 59  -------YPCKKDDS--CSFVGKTWTLYLKH 80

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 255 KCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEK 307
            C F+ C  +F  ++ L+ H +  H +  P+ C   GC  RF+       HEK
Sbjct: 3   VCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 54.4 bits (132), Expect = 7e-10
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCP 127
            C  C  +F +  +L  H+ +H  E+PF C  D C   + R D   RH            
Sbjct: 5   QCRICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHRDIQHILPILE- 61

Query: 128 IENCNREFTIQGNMKRHVK 146
            +      +   +++  V 
Sbjct: 62  -DKVEELLSKNYHLENEVA 79

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 76  FKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNRE 134
                 L  +++     RP+ C V+ C   + R D LTRH+  H G K F+C I  C R 
Sbjct: 3   PHPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRN 58

Query: 135 FTIQGNMKRHVK 146
           F+   ++  H++
Sbjct: 59  FSRSDHLTTHIR 70

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRH 119
             E C   F +   L +H+  H  ++PF+C +  C  ++ R DHLT H+  H
Sbjct: 23  PVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH 72

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 68  TCEECGASFKKPAYLKQHMLSH---LLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLF 124
            CE CG + ++ A L  H   H   +    F C    C   + + D +  H  +    L 
Sbjct: 9   QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPALL 66

Query: 125 KCPIENC 131
             P E+ 
Sbjct: 67  LAPQESS 73

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 9/68 (13%)

Query: 92  ERPFRCSVDDCHASYRRKDHLTRHLLRHQG----KLFKCPIENCNREFTIQGNMKRHVKE 147
               +C +  C  + R+K  L  H  +H        F C  E C + F    ++  H + 
Sbjct: 5   SSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPC--EFCGKRFEKPDSVAAH-RS 59

Query: 148 LHHEGTTS 155
             H     
Sbjct: 60  KSHPALLL 67

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 226 CEICG-SMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKP 284
           CEICG + + K ++  H R H     + R  C+F  C   F    ++  H    H  +  
Sbjct: 10  CEICGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPALLL 67

Query: 285 FACS 288
               
Sbjct: 68  APQE 71

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 52.5 bits (127), Expect = 3e-09
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG---KLF 124
            CE CG  F+   +L +H LSH  E+P+ C    C   ++RKD ++ H+  H G   K +
Sbjct: 9   ACEICGKIFRDVYHLNRHKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKPY 66

Query: 125 KCPIENCNREFTIQGNMKRHVKELH 149
            C  ++C + F+   ++  H+K++H
Sbjct: 67  IC--QSCGKGFSRPDHLNGHIKQVH 89

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 53.3 bits (129), Expect = 4e-09
 Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 20/121 (16%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRH---LLRHQG-KL 123
            C  C   F    YLK H   H  E+PF C    C   Y RK++L  H      ++  ++
Sbjct: 9   ECPTCHKKFLSKYYLKVHNRKHTGEKPFECP--KCGKCYFRKENLLEHEARNCMNRSEQV 66

Query: 124 FKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQ 183
           F C    C   F  +  ++ H+    H G        +  Y C    C + F     L+ 
Sbjct: 67  FTC--SVCQETFRRRMELRLHMVS--HTG--------EMPYKCSS--CSQQFMQKKDLQS 112

Query: 184 H 184
           H
Sbjct: 113 H 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLR 118
           TC  C  +F++   L+ HM+SH  E P++CS   C   + +K  L  H+++
Sbjct: 68  TCSVCQETFRRRMELRLHMVSHTGEMPYKCS--SCSQQFMQKKDLQSHMIK 116

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 52.1 bits (126), Expect = 5e-09
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 70  EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI 128
           E C   F +   L +H+  H  ++PF+C    C  ++ R DHLT H+  H G K F C  
Sbjct: 10  ESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFAC-- 65

Query: 129 ENCNREFTIQGNMKRHVK 146
           + C R+F      KRH K
Sbjct: 66  DICGRKFARSDERKRHTK 83

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 48.6 bits (117), Expect = 8e-08
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 15/99 (15%)

Query: 91  LERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELH 149
           +ERP+ C V+ C   + +   LTRH+  H G K F+C    C R F+   ++  H++   
Sbjct: 1   MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRT-- 56

Query: 150 HEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSH 188
           H G        +K + C    CG+ F  + + ++H   H
Sbjct: 57  HTG--------EKPFACDI--CGRKFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG 121
            C  C  +F +  +L  H+ +H  E+PF C  D C   + R D   RH   H  
Sbjct: 36  QCRICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHLR 87

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 51.8 bits (125), Expect = 5e-09
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 68  TCEECGASFKKPAYLKQHM-LSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFK 125
               CG  F    YL  H    H+ ++ F C    C  S+  K HL  H+  H   + + 
Sbjct: 11  DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYI 70

Query: 126 CPIENC 131
           C     
Sbjct: 71  CEFSGP 76

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 14/89 (15%)

Query: 89  HLLERPFRCSVDDCHASYRRKDHLTRHL-LRHQG-KLFKCPIENCNREFTIQGNMKRHVK 146
                   C    C   +  + +L  H   +H   K F CP   C + F  + ++K H+K
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61

Query: 147 ELHHEGTTSTDSGDQKQYICQEIGCGKVF 175
                      S   + YIC+    G   
Sbjct: 62  ---------LHSDT-RDYICEF--SGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 45.6 bits (109), Expect = 6e-07
 Identities = 20/53 (37%), Positives = 21/53 (39%)

Query: 255 KCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEK 307
            C F GC   FS    L  H K  H   K F+C    CG  F FK     H K
Sbjct: 9   PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 122 KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKL 181
               C    C R F+ +  +  H K  H           QK + C E  CGK F +   L
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQH--------IH-QKSFSCPEPACGKSFNFKKHL 56

Query: 182 RQHEDSH 188
           ++H   H
Sbjct: 57  KEHMKLH 63

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 28/95 (29%)

Query: 198 CSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQ 257
           C  PGC + F+N+Q L  H +  H                       H+     +   C 
Sbjct: 10  CDFPGCGRIFSNRQYLNHHKKYQH----------------------IHQ-----KSFSCP 42

Query: 258 FKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC 292
              C  SF+   +L++H+K +H + + + C F G 
Sbjct: 43  EPACGKSFNFKKHLKEHMK-LHSDTRDYICEFSGP 76

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 51.4 bits (124), Expect = 5e-09
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 82  LKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG---KLFKCPIENCNREFTIQ 138
                 +H  E+P+ C +  CHA + +   +  H+L+        F CP   C+     +
Sbjct: 3   SGSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARK 58

Query: 139 GNMKRHVKELH 149
            ++  H+++ H
Sbjct: 59  SDLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLE--RPFRCSVDDCHASYRRKDHLTRHL 116
            C  C A F +   +K H+L    E    F C    C     RK  L  HL
Sbjct: 17  ECYICHARFTQSGTMKMHILQKHTENVAKFHC--PHCDTVIARKSDLGVHL 65

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 82  LKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGN 140
                +     R   CS   C  +Y +  HL  H   H G K F C  + C R F     
Sbjct: 5   SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64

Query: 141 MKRHVK 146
           + RH +
Sbjct: 65  LSRHRR 70

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 48.2 bits (115), Expect = 6e-08
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 72  CGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRH 119
           CG ++ K ++LK H  +H  E+PF CS   C   + R D L+RH   H
Sbjct: 25  CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 239 KRHVRTHEARDLSERI-KCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFA 297
                  +      R   C   GC  ++  +S+L+ H +  H   KPF+CS+ GC  RFA
Sbjct: 2   SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFA 60

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 53.6 bits (130), Expect = 9e-09
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 17/122 (13%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC 126
            C ECG SF +  +L +H  +H  E+P++C   +C  S+  K  LTRH   H G K +KC
Sbjct: 23  ACPECGKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKDLTRHQRTHTGEKPYKC 80

Query: 127 PIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHED 186
               C + F+ + N++ H +   H G        +K Y C E  CGK F   + LR H+ 
Sbjct: 81  --PECGKSFSQRANLRAHQRT--HTG--------EKPYACPE--CGKSFSQLAHLRAHQR 126

Query: 187 SH 188
           +H
Sbjct: 127 TH 128

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 58/219 (26%), Positives = 78/219 (35%), Gaps = 60/219 (27%)

Query: 75  SFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNR 133
           S    +           E+P+ C   +C  S+ R DHL  H   H G K +KC    C +
Sbjct: 2   SEFGSSSSVAQAALEPGEKPYACP--ECGKSFSRSDHLAEHQRTHTGEKPYKC--PECGK 57

Query: 134 EFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDS 193
            F+ + ++ RH +   H G        +K Y C E  CGK F   + LR H+ +H     
Sbjct: 58  SFSDKKDLTRHQR--THTG--------EKPYKCPE--CGKSFSQRANLRAHQRTHTGEKP 105

Query: 194 VEAFCSEPGCMKYFTNKQCLEAHIRSCHQ----YIPCEICGSMQLKKNIKRHVRTHEARD 249
               C E  C K F+    L AH R+ H     Y  C  CG                   
Sbjct: 106 YA--CPE--CGKSFSQLAHLRAHQRT-HTGEKPYK-CPECGK------------------ 141

Query: 250 LSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS 288
                         SFS   NL  H +  H   KP+ C 
Sbjct: 142 --------------SFSREDNLHTH-QRTHTGEKPYKCP 165

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 47.0 bits (113), Expect = 4e-07
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 69  CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP 127
           C+ CG  F K   L  H  +H  ERP+ C  D CH ++RR+DHL  H   H   K FKC 
Sbjct: 20  CKFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKC- 76

Query: 128 IENCNREFTIQGNMKRH 144
            + C + F     +  H
Sbjct: 77  -QECGKGFCQSRTLAVH 92

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC 126
           TC+ C  +F++  +L+ H   H  E+PF+C   +C   + +   L  H   H        
Sbjct: 47  TCDICHKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVHKTLHMQTSSPTA 104

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 45.6 bits (109), Expect = 5e-07
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 69  CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG 121
           C EC  S    A L+ H   H  +RPF+C  + C    ++  +L++H+ +  G
Sbjct: 12  CSECSYSCSSKAALRIHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKKFHG 62

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 46.7 bits (112), Expect = 6e-07
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 19/113 (16%)

Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIE 129
           +CG SF   +   +HM  HL  RP+ C    C   ++ K HL  H+  H G K ++C   
Sbjct: 14  QCGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFKMKHHLVGHMKIHTGIKPYEC--N 69

Query: 130 NCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLR 182
            C + F  + +  RHV       T        K Y   +    +    AS   
Sbjct: 70  ICAKRFMWRDSFHRHV----TSCT--------KSYEAAK--AEQNTTEASGPS 108

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 45.9 bits (110), Expect = 7e-07
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 69  CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP 127
           CE CG  F +   LK HM  H   +P++C    C  +      L +HL  H   + FKC 
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKC- 67

Query: 128 IENCNREFTIQGNMKRH 144
            + C         +  H
Sbjct: 68  -QICPYASRNSSQLTVH 83

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 41.6 bits (99), Expect = 3e-05
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 17/103 (16%)

Query: 25  YYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQ 84
           + C+ CG C S+K  + +H+  H               GV+   C+ C  +    + L +
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCH--------------TGVKPYKCKTCDYAAADSSSLNK 54

Query: 85  HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC 126
           H+  H  ERPF+C    C  + R    LT HL  H G      
Sbjct: 55  HLRIHSDERPFKC--QICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 44.8 bits (107), Expect = 9e-07
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 69  CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLR-HQG 121
           CE C  +F +  +LK+H  SH  E+P+ C    C+ ++ R+D L RH  + H G
Sbjct: 5   CEVCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQKIHSG 56

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 68  TCEECGASFKKPAYLKQHMLS--HLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG 121
            C+ C   +   +   +H ++      + + C    C   + RKD++T H+     
Sbjct: 12  RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 92  ERPFRCSVDDCHASYRRKDHLTRHL--LRHQG-KLFKCPIENCNREFTIQGNMKRHVKEL 148
           E  +RC    C   Y    +  RH      +  K++ CP   C +EFT + NM  HVK +
Sbjct: 8   EHTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVK-I 62

Query: 149 HHE 151
            H+
Sbjct: 63  IHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 12/67 (17%)

Query: 122 KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKL 181
             ++C +  C+R +T   N  RH    H            K Y C    C K F     +
Sbjct: 9   HTYRCKV--CSRVYTHISNFCRHYVTSHKRN--------VKVYPCPF--CFKEFTRKDNM 56

Query: 182 RQHEDSH 188
             H    
Sbjct: 57  TAHVKII 63

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 85  HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC 126
              S   E+PF C+   C   + R D L+RH   H G K    
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 42.4 bits (99), Expect = 6e-06
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 68  TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG 121
            CEECG   KKP+ LK+H+ +H   RP+ C    C+ S++ K +LT+H+     
Sbjct: 3   ICEECGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAH 54

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 42.8 bits (102), Expect = 7e-06
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 69  CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP 127
           C+ CG SFK+ + L  H+L H   RP+ C    C   + +K  + +H   H G K  KC 
Sbjct: 4   CKICGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHKC- 60

Query: 128 IENCNREFTIQGNMKRH 144
            + C + F+   N+  H
Sbjct: 61  -QVCGKAFSQSSNLITH 76

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 69  CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRH 115
           C+ C ASF+    L  H   H  E+P+RC  + C A + R  +L  H
Sbjct: 20  CDRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLKTH 64

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 5/115 (4%)

Query: 6   DMEEEKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEE-RVDGDGETKGV 64
            +   KG+       +++RY+       R  ++++ + I +    DE   +     +K +
Sbjct: 13  YLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI 72

Query: 65  QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRH 119
               C  C   F     LKQH+     E    C V  C   +   D    H+ + 
Sbjct: 73  SQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPV--CKKEFTSTDSALDHVCKK 123

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 9/76 (11%)

Query: 25 YYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQC--NTCEECGASFKKPAYL 82
               C    S    +++H+   H        G  E     C    C   G SFK    L
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHV-------GGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 83 KQHMLSHLLERPFRCS 98
            H+  H  E+    S
Sbjct: 79 VNHIRVHTGEKSGPSS 94

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 126 CPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGC---GKVFKYASKLR 182
            P ++C+R F+    +  HV   H          +Q  ++C    C   GK FK   KL 
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEH------VGGPEQNNHVCYWEECPREGKSFKAKYKLV 79

Query: 183 QHEDSHVN 190
            H   H  
Sbjct: 80  NHIRVHTG 87

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 23/103 (22%), Positives = 30/103 (29%), Gaps = 10/103 (9%)

Query: 82  LKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNM 141
            K +         FRC   DC A+Y     LT H+               +     + + 
Sbjct: 7   GKLYGSIFTGASKFRCK--DCSAAYDTLVELTVHMNETGHYRDDN--HETDNNNPKRWSK 62

Query: 142 KRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQH 184
            R    L  EG        QK   C    CG  F+    L  H
Sbjct: 63  PRKRSLLEMEGKEDA----QKVLKCMY--CGHSFESLQDLSVH 99

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 68  TCEECGASFKKPAYLKQHM--LSHLLERPFRCSVDD-CHASYRRKDHLTRHLLRHQG-KL 123
            C++C A++     L  HM    H  +       ++    S  RK  L     +    K+
Sbjct: 21  RCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV 80

Query: 124 FKCPIENCNREFTIQGNMKRHVKELHH 150
            KC    C   F    ++  H+ +  H
Sbjct: 81  LKCMY--CGHSFESLQDLSVHMIKTKH 105

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 69  CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG 121
           C ECG +F + + L QH   H  E+P++C   +C  ++ +   L  H   H  
Sbjct: 17  CVECGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLINHQRIHTS 67

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 10/74 (13%)

Query: 25 YYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQ 84
          Y C +C     +K L+  H   +H                    C +CG +F +   + +
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYH----------DPNFVPAAFVCSKCGKTFTRRNTMAR 65

Query: 85 HMLSHLLERPFRCS 98
          H  +          
Sbjct: 66 HADNCAGPDGVEGE 79

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 69  CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRH 115
           C+ECG SF   + L +H  +H  E+P++C  D+C  ++ ++ HL  H
Sbjct: 21  CDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGH 65

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 47/313 (15%), Positives = 88/313 (28%), Gaps = 79/313 (25%)

Query: 40  ILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQ--HMLSHLLERP--- 94
           ILS       ++ +  D     K +   + EE          +     +   LL +    
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSIL--SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 95  ---FRCSVDD---------CHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMK 142
              F   V                R+   +TR  +  + +L+     N N+ F      K
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFA-----K 128

Query: 143 RHV--KELHHEGTTSTDSGDQKQYICQE--IGCGKVFKYASKLRQHEDSHVNLDSVEAF- 197
            +V   + + +   +       + +  +  +G GK +        ++        +  F 
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FW 186

Query: 198 -----CSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSE 252
                C+ P        +  LE   +  +Q I            NIK   R H  +    
Sbjct: 187 LNLKNCNSP--------ETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKL--RIHSIQAELR 235

Query: 253 RIKC--QFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGM----RFA--------- 297
           R+     ++ CLL       L  +V+        F      C +    RF          
Sbjct: 236 RLLKSKPYENCLLV------LL-NVQNAK-AWNAFN---LSCKILLTTRFKQVTDFLSAA 284

Query: 298 -FKHVRDNHEKSG 309
              H+  +H    
Sbjct: 285 TTTHISLDHHSMT 297

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 68 TCEECGASFKKPAYLKQHMLSHLLERPFRCS 98
           CE CG  F+   +L +H LSH  E+P+   
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSG 44

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 61  TKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQ 120
            +  +   C  C A          H    L      C    C   +   +    H  + +
Sbjct: 11  VENKEVYQCRLCNAKLSSLLEQGSHE--RLCRNAAVCPY--CSLRFFSPELKQEHESKCE 66

Query: 121 GKLFKCPIENCNREFTIQGNMKRHVKELHHEGTTS 155
            K   C    C R F    ++ RH  E+H++   +
Sbjct: 67  YKKLTCLE--CMRTFKSSFSIWRHQVEVHNQNNMA 99

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 203 CMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCL 262
           C    ++     +H R C     C  C        +K+    HE++   +++ C    C+
Sbjct: 22  CNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQE---HESKCEYKKLTCLE--CM 76

Query: 263 LSFSTNSNLRQHVKAVHYE 281
            +F ++ ++ +H   VH +
Sbjct: 77  RTFKSSFSIWRHQVEVHNQ 95

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Length = 31

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 93  RPFRCSVDDCHASYRRKDHLTRHLLRHQG 121
           RPF C+   C   + R D L RH   H G
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTG 29

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	362
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.87
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.86
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.86
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.85
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.85
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.84
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.84
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.83
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.76
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.73
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.73
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.72
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.72
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.7
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.69
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.69
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.68
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.68
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.68
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.67
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.66
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.64
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.63
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.63
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.63
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.62
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.62
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.61
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.61
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.6
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.59
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.57
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.55
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.55
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.52
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.52
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.49
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.47
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.45
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.45
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.44
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.41
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.41
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.41
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.4
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.39
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.39
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.38
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.38
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.37
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.37
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.35
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.34
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.34
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.33
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.33
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.32
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.31
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.3
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.29
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.29
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.27
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.26
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.24
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.24
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.24
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.24
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.22
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.19
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.18
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.17
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.14
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.12
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.07
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.04
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.98
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.97
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.94
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.91
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.9
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.9
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.9
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.89
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.89
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.89
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.89
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.88
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.86
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.86
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.86
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.85
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.83
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.83
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.83
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.83
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.82
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.81
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.81
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.81
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.8
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.8
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.8
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.79
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.79
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.79
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.79
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.78
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.78
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.78
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.78
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.78
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.78
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.77
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.77
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.77
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.77
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.77
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.77
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.76
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.76
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.76
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.76
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.75
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.75
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.75
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.75
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.75
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.75
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.75
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.75
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.75
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.75
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.74
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.74
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.73
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.73
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.73
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.73
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.73
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.73
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.73
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.72
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.72
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.72
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.72
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.71
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.71
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.71
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.71
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.7
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.7
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.7
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.69
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.69
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.69
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.68
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.68
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.68
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.68
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.68
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.67
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.67
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.67
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.66
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.66
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.66
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.66
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.65
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.65
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.64
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.64
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.64
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.63
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.62
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.62
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.6
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.6
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.6
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.59
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.58
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.58
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.58
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.58
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.57
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.56
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.55
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.54
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.53
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.52
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.47
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.45
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.43
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.41
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.41
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.4
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.39
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.37
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.31
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.31
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.29
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.29
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.27
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.26
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.26
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.25
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.21
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.17
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.16
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.14
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.13
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.11
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.11
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.11
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.1
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.09
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.09
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.09
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.08
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.08
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.06
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.06
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.06
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.06
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.06
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.05
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.05
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.03
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.02
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.02
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.02
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.01
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.0
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.99
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.99
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.97
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.97
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.96
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.96
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.95
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.95
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.94
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.94
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.94
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.93
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.93
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.15
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.92
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.92
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.15
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.92
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.14
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.13
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.87
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.07
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.84
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.99
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.78
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.76
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.75
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.68
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.59
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.84
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.04
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.01
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.79
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.78
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.69
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.65
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.09
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.31
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	91.83
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	88.56
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	87.26
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	87.2
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	86.02
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.54
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.34
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	85.3
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	84.25
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	83.07
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	80.91

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=9.9e-34  Score=233.52  Aligned_cols=178  Identities=33%  Similarity=0.650  Sum_probs=100.1

Q ss_pred             hHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCC
Q 048459           80 AYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDS  158 (362)
Q Consensus        80 ~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~  158 (362)
                      ..|..|++.|.++++|.|..  |++.|.+...|..|++.|.+ ++|.|+.  |++.|.+...|..|++.++         
T Consensus         7 ~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~---------   73 (190)
T 2i13_A            7 SSSVAQAALEPGEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHT---------   73 (190)
T ss_dssp             --------------------------CCSSHHHHHGGGCC---CCEECTT--TCCEESSHHHHHHHHHHHH---------
T ss_pred             ccchhhhhhcCCCCCCcCCC--CccccCCHHHHHHHHHHcCCCCCccCCC--cCchhCCHHHHHHHHHhcC---------
Confidence            45677777777777788854  88888888888888777776 7777766  7777777777777777555         


Q ss_pred             CCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCcccchhHH
Q 048459          159 GDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNI  238 (362)
Q Consensus       159 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~~~~~l  238 (362)
                       +.++|.|+.  |++.|.+...|..|++.|.++++    |.|+.|++.|.+...|..|+++                   
T Consensus        74 -~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~----~~C~~C~~~f~~~~~l~~H~~~-------------------  127 (190)
T 2i13_A           74 -GEKPYKCPE--CGKSFSQRANLRAHQRTHTGEKP----YACPECGKSFSQLAHLRAHQRT-------------------  127 (190)
T ss_dssp             -CCCCEECTT--TCCEESCHHHHHHHHHHHHTCCC----EECTTTCCEESSHHHHHHHHHH-------------------
T ss_pred             -CCCCccCcc--cCCccCCHHHHHHHHHhcCCCCC----CcCCCCCCccCCHHHHHHHHHH-------------------
Confidence             446777777  77777777777777777766443    3556666666666655555555                   


Q ss_pred             HHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          239 KRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       239 ~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                            |+++   ++|.|  +.|++.|.+...|..|++ .|+++++|.|++  |++.|.+...|..|+++|+
T Consensus       128 ------h~~~---~~~~C--~~C~~~f~~~~~L~~H~~-~H~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~  185 (190)
T 2i13_A          128 ------HTGE---KPYKC--PECGKSFSREDNLHTHQR-THTGEKPYKCPE--CGKSFSRRDALNVHQRTHT  185 (190)
T ss_dssp             ------HHCC---CCEEC--TTTCCEESCHHHHHHHHH-HHHCCCCEECTT--TCCEESSHHHHHHHHTTC-
T ss_pred             ------hCCC---CCeEC--CCCCcccCCHHHHHHHHH-hcCCCCCeECCC--CCCccCCHHHHHHHHHhcC
Confidence                  4443   34666  446666666666666665 566666666666  6666666666666666554

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=3.8e-33  Score=230.02  Aligned_cols=169  Identities=30%  Similarity=0.638  Sum_probs=88.1

Q ss_pred             CCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      +.++++|.|..|++.|.+...|..|++.|++..              +|.|+.|++.|.+...|..|++.|.++++|.|.
T Consensus        16 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   81 (190)
T 2i13_A           16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEK--------------PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP   81 (190)
T ss_dssp             ---------------CCSSHHHHHGGGCC---C--------------CEECTTTCCEESSHHHHHHHHHHHHCCCCEECT
T ss_pred             cCCCCCCcCCCCccccCCHHHHHHHHHHcCCCC--------------CccCCCcCchhCCHHHHHHHHHhcCCCCCccCc
Confidence            345556666666666666666666666555432              266666666666666666666666666666664


Q ss_pred             cccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccC
Q 048459           99 VDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKY  177 (362)
Q Consensus        99 ~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~  177 (362)
                      +  |++.|.+...|..|++.|.+ ++|.|+.  |++.|.+...|..|++.++          ++++|.|+.  |++.|.+
T Consensus        82 ~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~----------~~~~~~C~~--C~~~f~~  145 (190)
T 2i13_A           82 E--CGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRTHT----------GEKPYKCPE--CGKSFSR  145 (190)
T ss_dssp             T--TCCEESCHHHHHHHHHHHHTCCCEECTT--TCCEESSHHHHHHHHHHHH----------CCCCEECTT--TCCEESC
T ss_pred             c--cCCccCCHHHHHHHHHhcCCCCCCcCCC--CCCccCCHHHHHHHHHHhC----------CCCCeECCC--CCcccCC
Confidence            3  66666666666666666555 5566655  6666666666666665443          345566666  6666666


Q ss_pred             HHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhhhC
Q 048459          178 ASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCH  221 (362)
Q Consensus       178 ~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  221 (362)
                      ...|..|++.|.++++    |.|+.|++.|.+...|..|+++|+
T Consensus       146 ~~~L~~H~~~H~~~~~----~~C~~C~~~f~~~~~L~~H~~~H~  185 (190)
T 2i13_A          146 EDNLHTHQRTHTGEKP----YKCPECGKSFSRRDALNVHQRTHT  185 (190)
T ss_dssp             HHHHHHHHHHHHCCCC----EECTTTCCEESSHHHHHHHHTTC-
T ss_pred             HHHHHHHHHhcCCCCC----eECCCCCCccCCHHHHHHHHHhcC
Confidence            6666666666655433    345555555555555555555533

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=3.3e-30  Score=212.36  Aligned_cols=171  Identities=32%  Similarity=0.603  Sum_probs=145.2

Q ss_pred             CCCccccc--cccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccCh
Q 048459           62 KGVQCNTC--EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQ  138 (362)
Q Consensus        62 ~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~  138 (362)
                      .+.++|.|  +.|++.|.+...|..|++.|.++++|.|.++.|++.|.+...|..|++.|.+ ++|.|....|++.|.+.
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~   87 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTK   87 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCH
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCH
Confidence            34677999  7899999999999999999999999999322399999999999999999998 89999822399999999


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCCCcccc--CCCCcchhccCHHHHHhHHhhccCcCCcccccccCC--cCccCCCHHHHH
Q 048459          139 GNMKRHVKELHHEGTTSTDSGDQKQYIC--QEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPG--CMKYFTNKQCLE  214 (362)
Q Consensus       139 ~~l~~H~~~~h~~~~~~~~~~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~  214 (362)
                      ..|..|+...|..        +..+|.|  +.  |++.|.+...|..|+++|.++++    |.|+.  |++.|.+...|.
T Consensus        88 ~~l~~H~~~~h~~--------~~~~~~C~~~~--C~k~f~~~~~L~~H~~~H~~~~~----~~C~~~~C~k~F~~~~~L~  153 (190)
T 1tf6_A           88 ANMKKHFNRFHNI--------KICVYVCHFEN--CGKAFKKHNQLKVHQFSHTQQLP----YECPHEGCDKRFSLPSRLK  153 (190)
T ss_dssp             HHHHHHHHTTSST--------TTSCCEECSSS--SCEECSSHHHHHHHHGGGSSSCS----SBCCSSSCCCBCSSHHHHH
T ss_pred             HHHHHHHHHhcCC--------CcceeeCCCCC--CccccCCHHHHHHHHHHhCCCCC----ccCCCCCCCchhcCHHHHH
Confidence            9999999767742        4678999  88  99999999999999999998665    47877  999999999999


Q ss_pred             HHHhhhCCCcCCCC---CCccc-chhHHHHHHHhhcc
Q 048459          215 AHIRSCHQYIPCEI---CGSMQ-LKKNIKRHVRTHEA  247 (362)
Q Consensus       215 ~H~~~~h~~~~C~~---C~~~~-~~~~l~~H~~~h~~  247 (362)
                      +|+++|++ |+|++   |++.| +...|..|+++|++
T Consensus       154 ~H~~~H~~-~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          154 RHEKVHAG-YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             HHHTSSCS-CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             HHHHHhCC-CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence            99998555 88888   77777 56777777777765

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=3.9e-30  Score=211.93  Aligned_cols=173  Identities=27%  Similarity=0.527  Sum_probs=150.2

Q ss_pred             CCCCCCCcccc--ccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccc--cccccccCChhHHHHHHHhccCC
Q 048459           17 PKSRDVRRYYC--DYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTC--EECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        17 ~~~~~~k~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      ....+.++|.|  ..|++.|.+...|..|++.|+++.              +|.|  +.|++.|.+...|.+|+++|.++
T Consensus         5 ~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~--------------~~~C~~~~C~~~f~~~~~l~~H~~~h~~~   70 (190)
T 1tf6_A            5 ALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEK--------------PFPCKEEGCEKGFTSLHHLTRHSLTHTGE   70 (190)
T ss_dssp             -----CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCC--------------SSCCSSTTCCCCCSSHHHHHHHHTTTTTC
T ss_pred             cccCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCC--------------CccCCCCCCChhhCCHHHHHHHHHHccCC
Confidence            34456889999  689999999999999999998864              4999  88999999999999999999999


Q ss_pred             CCeecccccccccccChhHHHHHH-HHcC-C-CcccC--CccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccC
Q 048459           93 RPFRCSVDDCHASYRRKDHLTRHL-LRHQ-G-KLFKC--PIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQ  167 (362)
Q Consensus        93 ~~~~C~~~~C~~~f~~~~~l~~H~-~~h~-~-~~~~C--~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~  167 (362)
                      ++|.|..+.|++.|.+...|..|+ +.|. + ++|.|  ..  |++.|.+...|..|++.++          ++++|.|+
T Consensus        71 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~--C~k~f~~~~~L~~H~~~H~----------~~~~~~C~  138 (190)
T 1tf6_A           71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFEN--CGKAFKKHNQLKVHQFSHT----------QQLPYECP  138 (190)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSS--SCEECSSHHHHHHHHGGGS----------SSCSSBCC
T ss_pred             CceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCC--CccccCCHHHHHHHHHHhC----------CCCCccCC
Confidence            999996225999999999999999 4553 3 78999  76  9999999999999998544          56899995


Q ss_pred             CCCcchhccCHHHHHhHHhhccCcCCcccccccCC---cCccCCCHHHHHHHHhhhCC
Q 048459          168 EIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPG---CMKYFTNKQCLEAHIRSCHQ  222 (362)
Q Consensus       168 ~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~---C~~~f~~~~~l~~H~~~~h~  222 (362)
                      ..+|++.|.+...|..|+++|.+       +.|+.   |++.|.+...|..|+++||+
T Consensus       139 ~~~C~k~F~~~~~L~~H~~~H~~-------~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          139 HEGCDKRFSLPSRLKRHEKVHAG-------YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             SSSCCCBCSSHHHHHHHHTSSCS-------CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             CCCCCchhcCHHHHHHHHHHhCC-------CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence            54599999999999999999986       57788   99999999999999999774

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=7.3e-26  Score=180.02  Aligned_cols=148  Identities=28%  Similarity=0.515  Sum_probs=107.1

Q ss_pred             CccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccc-----cccccCChhHHHHHHHhccCCCCeec
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEE-----CGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~-----C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      .+|.|..|++.|.+...|..|++.++...           +.++|.|++     |++.|.+...|.+|++.|.++++|.|
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~-----------~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C   70 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHG-----------ERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKC   70 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSS-----------CSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCC
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCC-----------CCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccC
Confidence            46888888888888888888887422110           124466654     34788888888888888888888888


Q ss_pred             ccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhcc
Q 048459           98 SVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFK  176 (362)
Q Consensus        98 ~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~  176 (362)
                      .+++|++.|.+...|..|++.|.+ ++|.|++.+|++.|.+...|..|+...|.         ++++|.|+.++|++.|.
T Consensus        71 ~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~---------~~~~~~C~~~~C~~~f~  141 (155)
T 2gli_A           71 TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS---------NEKPYVCKLPGCTKRYT  141 (155)
T ss_dssp             CSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTC---------SCCCEECCSTTTCCEES
T ss_pred             CCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcC---------CCCCeeCCCCCCccccC
Confidence            544588888888888888888776 77888644588888888888888744554         55678886555888888


Q ss_pred             CHHHHHhHHhhccC
Q 048459          177 YASKLRQHEDSHVN  190 (362)
Q Consensus       177 ~~~~l~~H~~~h~~  190 (362)
                      +...|..|++.|+|
T Consensus       142 ~~~~L~~H~~~hhg  155 (155)
T 2gli_A          142 DPSSLRKHVKTVHG  155 (155)
T ss_dssp             SHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHhhcC
Confidence            88888888777654

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=2.3e-25  Score=177.09  Aligned_cols=143  Identities=22%  Similarity=0.394  Sum_probs=113.7

Q ss_pred             CccccCCCCcchhccCHHHHHhHHh---hccCcCCcccc-cccCCcCccCCCHHHHHHHHhhhCC--CcCCCC--CCccc
Q 048459          162 KQYICQEIGCGKVFKYASKLRQHED---SHVNLDSVEAF-CSEPGCMKYFTNKQCLEAHIRSCHQ--YIPCEI--CGSMQ  233 (362)
Q Consensus       162 ~~~~C~~~~C~~~f~~~~~l~~H~~---~h~~~~~~~~~-~~C~~C~~~f~~~~~l~~H~~~~h~--~~~C~~--C~~~~  233 (362)
                      .+|.|+.  |++.|.+...|..|++   .|.+.+++... +.|+.|++.|.+...|..|++.|++  +|.|++  |++.|
T Consensus         2 ~~~~C~~--C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f   79 (155)
T 2gli_A            2 TDCRWDG--CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSY   79 (155)
T ss_dssp             CBCCBTT--CCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCC
T ss_pred             CcCCcCC--CccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcc
Confidence            3566777  7777777777777776   45444443221 1356667888888888888888764  788875  88888


Q ss_pred             -chhHHHHHHHhhccCCCCCceeecccC--ccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          234 -LKKNIKRHVRTHEARDLSERIKCQFKG--CLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       234 -~~~~l~~H~~~h~~~~~~~~~~C~~~~--C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                       +...|..|+++|.++   ++|.|  +.  |++.|.+...|..|++..|+++++|.|++++|++.|.+...|..|+++||
T Consensus        80 ~~~~~l~~H~~~h~~~---~~~~C--~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A           80 SRLENLKTHLRSHTGE---KPYMC--EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             SSHHHHHHHHHHTTTC---CCEEC--CSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             cCHHHHHHHHHHcCCC---CCeeC--CCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence             678899999988886   57999  65  99999999999999955999999999987779999999999999999987


Q ss_pred             c
Q 048459          311 H  311 (362)
Q Consensus       311 ~  311 (362)
                      +
T Consensus       155 g  155 (155)
T 2gli_A          155 G  155 (155)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=3.3e-22  Score=152.48  Aligned_cols=115  Identities=27%  Similarity=0.535  Sum_probs=97.5

Q ss_pred             CCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHh---ccCCCCe
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLS---HLLERPF   95 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~~~~~   95 (362)
                      ..+.++|.|.+|++.|.+...|..|++.|+++.              +|.|+.|++.|.+...|..|++.   +.++.+|
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--------------~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~   67 (124)
T 2dlq_A            2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEK--------------PFECPKCGKCYFRKENLLEHEARNCMNRSEQVF   67 (124)
T ss_dssp             CCCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCC--------------SCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCE
T ss_pred             CCCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCC--------------CeECCCCCchhcCHHHHHHHHhhhhcCCCCCCe
Confidence            356788999999999999999999998888753              48899999999999999999885   5677889


Q ss_pred             ecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHHhcCC
Q 048459           96 RCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHE  151 (362)
Q Consensus        96 ~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~  151 (362)
                      .|.+  |++.|.+...|..|++.|++ ++|.|++  |++.|.+...|..|++.+|..
T Consensus        68 ~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           68 TCSV--CQETFRRRMELRLHMVSHTGEMPYKCSS--CSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             ECSS--SCCEESSHHHHHHHHHHHSSSCSEECSS--SCCEESSHHHHHHHHHHTSSC
T ss_pred             ECCC--CCCccCCHHHHHHHHHHcCCCCCccCCC--ccchhCCHHHHHHHHHHHCCC
Confidence            9965  99999999999999998887 8899987  999999999999998877753

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.87  E-value=3e-22  Score=159.02  Aligned_cols=135  Identities=25%  Similarity=0.415  Sum_probs=108.2

Q ss_pred             CCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           18 KSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      ...+..+|.|..|++.|.+...|..|++.++......     .......|.|+.|++.|.+...|..|+++|.++++|.|
T Consensus        19 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~-----~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   93 (155)
T 2rpc_A           19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ-----NNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPC   93 (155)
T ss_dssp             CCTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTC-----SSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEEC
T ss_pred             echhhcccccccCCcccCCHHHHHHHHHhhcCCCccc-----CCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccC
Confidence            4456788999999999999999999999854432110     00111237899999999999999999999999999999


Q ss_pred             ccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccC
Q 048459           98 SVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQ  167 (362)
Q Consensus        98 ~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~  167 (362)
                      .++.|++.|.+...|..|+++|++ ++|.|.+.+|++.|.+...|..|++.++          ++++|.|.
T Consensus        94 ~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~----------~~k~~~c~  154 (155)
T 2rpc_A           94 PFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT----------SDKSGPSS  154 (155)
T ss_dssp             SCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTT----------SCCCSCSC
T ss_pred             CcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhc----------CCCCCCCC
Confidence            544599999999999999999988 8899974469999999999999988544          56778774

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.87  E-value=3.1e-22  Score=152.69  Aligned_cols=114  Identities=29%  Similarity=0.647  Sum_probs=91.0

Q ss_pred             CCCccccc--cccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           21 DVRRYYCD--YCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        21 ~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++++|.|.  .|++.|.+...|..|++.| +.              ++|.|+.|++.|.+...|..|++.|.++++|.|.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~--------------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   66 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GP--------------RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT   66 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SC--------------CCEECTTTCCEESSHHHHHHHGGGTSCCCCEECC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CC--------------CCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCC
Confidence            45678888  7888888888888888877 33              3488888888888888888888888888888885


Q ss_pred             cccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHHhc
Q 048459           99 VDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELH  149 (362)
Q Consensus        99 ~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h  149 (362)
                      ++.|++.|.+...|..|++.|.+ ++|.|+++.|++.|.+...|..|++.++
T Consensus        67 ~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~  118 (124)
T 1ubd_C           67 FEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA  118 (124)
T ss_dssp             STTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHc
Confidence            44588888888888888888877 7888853348888888888888888554

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.86  E-value=4.6e-22  Score=150.53  Aligned_cols=109  Identities=32%  Similarity=0.690  Sum_probs=84.1

Q ss_pred             CCCCcccccc--ccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccc--ccccccCChhHHHHHHHhccCCCCe
Q 048459           20 RDVRRYYCDY--CGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCE--ECGASFKKPAYLKQHMLSHLLERPF   95 (362)
Q Consensus        20 ~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~   95 (362)
                      .++++|.|.+  |++.|.+...|..|++.|++..              +|.|+  .|++.|.+...|..|++.|+++++|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~--------------~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~   67 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEK--------------PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF   67 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTC--------------CEECCSTTCCCEESSHHHHHHHHHHHHCCCCE
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCC--------------CccCCCCCCcCccCCHHHHHHHHHHcCCCCCc
Confidence            3567788876  8888888888888888777653              37787  6888888888888888888888888


Q ss_pred             ecccccccccccChhHHHHHHHHcCC-CcccC--CccCCchhccChhHHHHHHH
Q 048459           96 RCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC--PIENCNREFTIQGNMKRHVK  146 (362)
Q Consensus        96 ~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C--~~~~C~~~f~~~~~l~~H~~  146 (362)
                      .|..  |++.|.+...|..|++.|++ ++|.|  +.  |++.|.+...|..|++
T Consensus        68 ~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~--C~~~f~~~~~L~~H~~  117 (119)
T 2jp9_A           68 QCKT--CQRKFSRSDHLKTHTRTHTGEKPFSCRWPS--CQKKFARSDELVRHHN  117 (119)
T ss_dssp             ECTT--TCCEESCHHHHHHHHHHHHTCCCEECCSTT--CCCEESSHHHHHHHHH
T ss_pred             cCCc--cCchhCCHHHHHHHHHHhcCCCCeeCCCCC--CccccCCHHHHHHHHh
Confidence            8854  88888888888888887776 77888  55  8888888888888876

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.86  E-value=6.9e-22  Score=149.57  Aligned_cols=112  Identities=31%  Similarity=0.677  Sum_probs=97.7

Q ss_pred             CCccccccc--cccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChh
Q 048459           63 GVQCNTCEE--CGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQG  139 (362)
Q Consensus        63 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~  139 (362)
                      +.++|.|+.  |++.|.+...|..|++.|.++++|.|.++.|++.|.+...|..|++.|.+ ++|.|+.  |++.|.+..
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~   80 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT--CQRKFSRSD   80 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTT--TCCEESCHH
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCc--cCchhCCHH
Confidence            456799987  99999999999999999999999999633599999999999999999887 8899987  999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCcccc--CCCCcchhccCHHHHHhHHhhc
Q 048459          140 NMKRHVKELHHEGTTSTDSGDQKQYIC--QEIGCGKVFKYASKLRQHEDSH  188 (362)
Q Consensus       140 ~l~~H~~~~h~~~~~~~~~~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~h  188 (362)
                      .|..|++.++          ++++|.|  +.  |++.|.+...|..|+++|
T Consensus        81 ~l~~H~~~h~----------~~~~~~C~~~~--C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           81 HLKTHTRTHT----------GEKPFSCRWPS--CQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHHH----------TCCCEECCSTT--CCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHHhc----------CCCCeeCCCCC--CccccCCHHHHHHHHhcC
Confidence            9999998655          5678999  77  999999999999998875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=7.3e-21  Score=144.97  Aligned_cols=112  Identities=29%  Similarity=0.608  Sum_probs=97.2

Q ss_pred             CCccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHc---CC-CcccCCccCCchhccCh
Q 048459           63 GVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRH---QG-KLFKCPIENCNREFTIQ  138 (362)
Q Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h---~~-~~~~C~~~~C~~~f~~~  138 (362)
                      +.++|.|+.|++.|.+...|..|++.|.++++|.|.+  |++.|.+...|..|++.+   .+ ++|.|++  |++.|.+.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~--C~~~f~~~   79 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETFRRR   79 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT--TCCBCSSHHHHHHHHHHCCCCSCCCCEECSS--SCCEESSH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC--CCchhcCHHHHHHHHhhhhcCCCCCCeECCC--CCCccCCH
Confidence            4567999999999999999999999999999999966  999999999999999874   33 7899987  99999999


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhh-ccC
Q 048459          139 GNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDS-HVN  190 (362)
Q Consensus       139 ~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~  190 (362)
                      ..|..|++.++          ++++|.|++  |++.|.+...|..|++. |.+
T Consensus        80 ~~l~~H~~~h~----------~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           80 MELRLHMVSHT----------GEMPYKCSS--CSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HHHHHHHHHHS----------SSCSEECSS--SCCEESSHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHcC----------CCCCccCCC--ccchhCCHHHHHHHHHHHCCC
Confidence            99999998655          567899999  99999999999999874 544

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.85  E-value=8.7e-22  Score=151.05  Aligned_cols=85  Identities=21%  Similarity=0.394  Sum_probs=52.0

Q ss_pred             CCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           20 RDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        20 ~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      .|+++|.|.+|++.|.+.+.|..|+++|.++              ++|.|+.|++.|.+...|..|+++|++++||.|..
T Consensus        18 ~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~--------------k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   83 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWE--------------KKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA   83 (133)
T ss_dssp             TTEEEEEETTTCCEESCHHHHHHHHHHHHCC--------------SCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESS
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHHHHcCCC--------------CCeeCCccCeecccccchhhhccccCCCccccCCC
Confidence            4556666666666666666666666666554              23666666666666666666666666666666633


Q ss_pred             ccccccccChhHHHHHHHHcC
Q 048459          100 DDCHASYRRKDHLTRHLLRHQ  120 (362)
Q Consensus       100 ~~C~~~f~~~~~l~~H~~~h~  120 (362)
                        |++.|.+...|..|+++|+
T Consensus        84 --C~k~F~~~~~L~~H~~~hh  102 (133)
T 2lt7_A           84 --CGKSFINYQFMSSHIKSVH  102 (133)
T ss_dssp             --SCCEESSHHHHHHHHHHHT
T ss_pred             --CCCCcCCHHHHHHHhHHhc
Confidence              6666666666666666554

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.84  E-value=1.9e-21  Score=149.12  Aligned_cols=108  Identities=24%  Similarity=0.505  Sum_probs=93.6

Q ss_pred             CCCccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhH
Q 048459           62 KGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGN  140 (362)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~  140 (362)
                      .|+++|.|++|++.|.+...|.+|+++|++++||.|..  |++.|.+...|..|+++|.+ +||.|+.  |++.|.+...
T Consensus        18 ~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~k~F~~~~~   93 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRY--CEKVFPLAEYRTKHEIHHTGERRYQCLA--CGKSFINYQF   93 (133)
T ss_dssp             TTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSS--SSCEESSHHHHHHHHHHHHTCCCEEESS--SCCEESSHHH
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCc--cCeecccccchhhhccccCCCccccCCC--CCCCcCCHHH
Confidence            45678999999999999999999999999999999965  99999999999999999988 8999987  9999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHH
Q 048459          141 MKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYAS  179 (362)
Q Consensus       141 l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~  179 (362)
                      |..|++.+|+..+.    ...++|.|..  |++.|....
T Consensus        94 L~~H~~~hh~~~p~----~~~k~~~C~~--C~k~~~~~~  126 (133)
T 2lt7_A           94 MSSHIKSVHSQDPS----GDSKLYRLHP--CRSLQIRQY  126 (133)
T ss_dssp             HHHHHHHHTCCCTT----SSSCCEEECC--CCSSCCCCC
T ss_pred             HHHHhHHhcCCCCC----CCCCCeecCC--CCchhhhcc
Confidence            99999988864322    2346799999  998886543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.84  E-value=2.8e-21  Score=147.30  Aligned_cols=117  Identities=27%  Similarity=0.629  Sum_probs=99.2

Q ss_pred             Ccccccc--ccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhH
Q 048459           64 VQCNTCE--ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGN  140 (362)
Q Consensus        64 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~  140 (362)
                      .++|.|+  .|++.|.+...|..|++.| +.++|.|.+  |++.|.+...|..|++.|.+ ++|.|.++.|++.|.+...
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~   79 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN   79 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTT--TCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCC--CCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHH
Confidence            3569999  8999999999999999999 888999966  99999999999999999988 8999975569999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCC
Q 048459          141 MKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDS  193 (362)
Q Consensus       141 l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~  193 (362)
                      |..|++.++          ++++|.|+..+|++.|.+...|..|+++|+++++
T Consensus        80 l~~H~~~h~----------~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~  122 (124)
T 1ubd_C           80 LRTHVRIHT----------GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN  122 (124)
T ss_dssp             HHHHHHHHH----------CCCCCCCCSTTCCCCCSSTTTTHHHHHHHC----
T ss_pred             HHHHHHHhC----------CCCceECCCCCCCCccCCHHHHHHHHHHHccccc
Confidence            999998666          5688999522299999999999999999988654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.83  E-value=1.5e-20  Score=149.23  Aligned_cols=122  Identities=30%  Similarity=0.454  Sum_probs=64.9

Q ss_pred             CCCccccCCCCcchhccCHHHHHhHHhh-ccCcCCccc----ccccCCcCccCCCHHHHHHHHhhhCC--CcCCCC--CC
Q 048459          160 DQKQYICQEIGCGKVFKYASKLRQHEDS-HVNLDSVEA----FCSEPGCMKYFTNKQCLEAHIRSCHQ--YIPCEI--CG  230 (362)
Q Consensus       160 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~~----~~~C~~C~~~f~~~~~l~~H~~~~h~--~~~C~~--C~  230 (362)
                      +..+|.|..  |++.|.+...|..|++. |.+..+...    .+.|+.|++.|.+...|..|+++|++  +|.|++  |+
T Consensus        22 ~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~   99 (155)
T 2rpc_A           22 AQLSRPKKS--CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCG   99 (155)
T ss_dssp             TCCSSSCCC--CCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTC
T ss_pred             hhccccccc--CCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCC
Confidence            446677777  88888888888888776 444322110    13455555555555555555555432  344544  55


Q ss_pred             ccc-chhHHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCccccc
Q 048459          231 SMQ-LKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFAC  287 (362)
Q Consensus       231 ~~~-~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  287 (362)
                      +.| +...|..|+++|+++   ++|.|.+++|++.|.+...|..|++ +|+++++|+|
T Consensus       100 ~~f~~~~~L~~H~~~h~~~---~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~~c  153 (155)
T 2rpc_A          100 KIFARSENLKIHKRTHTGE---KPFKCEFEGCDRRFANSSDRKKHMH-VHTSDKSGPS  153 (155)
T ss_dssp             CEESCHHHHHHHHTTTCSS---CSBCCSSTTCCCCBSSHHHHHHSST-TTTSCCCSCS
T ss_pred             CccCCHHHHHHHHHhhCCC---CCccCCCCCCCCccCCHHHHHHHHH-HhcCCCCCCC
Confidence            444 344455555555443   3355511125555555555555554 4555555544

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.76  E-value=2.7e-18  Score=126.84  Aligned_cols=95  Identities=26%  Similarity=0.529  Sum_probs=83.4

Q ss_pred             CCCCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCe
Q 048459           16 RPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPF   95 (362)
Q Consensus        16 ~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   95 (362)
                      .....+.++|.|.+|++.|.+...|..|++.|++..              +|.|++|++.|.+...|..|++.|.++++|
T Consensus         9 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   74 (106)
T 2ee8_A            9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDER--------------PYTCDICHKAFRRQDHLRDHRYIHSKEKPF   74 (106)
T ss_dssp             CCCCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSC--------------CCBCSSSCCBCSCHHHHHHHGGGSCCCCTT
T ss_pred             cCCcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCC--------------CcCCCCccchhCCHHHHHHHHHHhCCCCCe
Confidence            334557788999999999999999999999998764              499999999999999999999999999999


Q ss_pred             ecccccccccccChhHHHHHHHHcCC-CcccC
Q 048459           96 RCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC  126 (362)
Q Consensus        96 ~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C  126 (362)
                      .|.+  |++.|.....|..|+++|.+ ++|.+
T Consensus        75 ~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           75 KCQE--CGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             SCSS--SCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             ECCC--cCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            9965  99999999999999999987 67654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=4.6e-18  Score=123.17  Aligned_cols=86  Identities=30%  Similarity=0.605  Sum_probs=62.2

Q ss_pred             CCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           20 RDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        20 ~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      .++++|.|.+|++.|.+...|..|++.|+...              +|.|+.|++.|.+...|.+|++.|+++++|.|.+
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   69 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVK--------------PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI   69 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCC--------------SEECSSSCCEESSHHHHHHHHHHSCCCCCEECSS
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCC--------------CEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCC
Confidence            45667777777777777777777777776543              3777777777777777777777777777777754


Q ss_pred             ccccccccChhHHHHHHHHcCC
Q 048459          100 DDCHASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus       100 ~~C~~~f~~~~~l~~H~~~h~~  121 (362)
                        |++.|.....|..|+++|++
T Consensus        70 --C~~~f~~~~~l~~H~~~h~~   89 (96)
T 2dmd_A           70 --CPYASRNSSQLTVHLRSHTG   89 (96)
T ss_dssp             --SSCEESSHHHHHHHHTTCCS
T ss_pred             --CCCccCCHHHHHHHHHHhcC
Confidence              77777777777777777765

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.73  E-value=4.9e-18  Score=119.13  Aligned_cols=82  Identities=27%  Similarity=0.645  Sum_probs=70.2

Q ss_pred             ccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeeccccccc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCH  103 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~  103 (362)
                      ||.|.+|++.|.+...|..|++.|++..              +|.|+.|++.|.+...|..|++.|+++++|.|..  |+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~--------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~   64 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTR--------------PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV--CG   64 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCC--------------CEECSSSCCEESSHHHHHHHHHHHHTCCCEECTT--TS
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCC--------------CeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCC--cc
Confidence            5889999999999999999998887753              4889999999999999999999888888999955  99


Q ss_pred             ccccChhHHHHHHHHcCC
Q 048459          104 ASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus       104 ~~f~~~~~l~~H~~~h~~  121 (362)
                      +.|.+...|..|+++|++
T Consensus        65 ~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           65 KAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             CEESSHHHHHHHHHHHC-
T ss_pred             hhhCChHHHHHHHHhhCC
Confidence            999999999999888864

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.72  E-value=7.4e-18  Score=120.48  Aligned_cols=85  Identities=28%  Similarity=0.518  Sum_probs=70.0

Q ss_pred             CCCccccc--cccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           21 DVRRYYCD--YCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        21 ~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++++|.|.  .|++.|.+...|..|++.|++..              +|.|+.|++.|.+...|..|++.|+++++|.|.
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~--------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   66 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQK--------------PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD   66 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCC--------------CEECTTTCCEESCHHHHHHHHHHHHCCCCEECT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCC--------------CccCCCCCcccCCHHHHHHHHHHcCCCCCccCC
Confidence            35788887  58888888888888888887753              388888888888888888888888888888885


Q ss_pred             cccccccccChhHHHHHHHHcCC
Q 048459           99 VDDCHASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus        99 ~~~C~~~f~~~~~l~~H~~~h~~  121 (362)
                      +  |++.|.+...|..|+++|++
T Consensus        67 ~--C~~~f~~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           67 I--CGRKFARSDERKRHTKIHLR   87 (90)
T ss_dssp             T--TCCEESSHHHHHHHHGGGGC
T ss_pred             C--CCchhCCHHHHHHHHHHhcc
Confidence            5  88888888888888888875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.8e-17  Score=122.55  Aligned_cols=95  Identities=17%  Similarity=0.279  Sum_probs=83.7

Q ss_pred             cCCCCCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCC
Q 048459           14 EERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLER   93 (362)
Q Consensus        14 ~~~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (362)
                      .....+.++++|.|.+|++.|.....|..|++.|..                +|.|++|++.|.+...|.+|++ |.+++
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~----------------~~~C~~C~~~f~~~~~l~~H~~-H~~~~   68 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN----------------AAVCPYCSLRFFSPELKQEHES-KCEYK   68 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHHH----------------SBCCTTTCCCBSSHHHHHHHHH-HCSTG
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCCC----------------CccCCCCCCccCCHHHHHHHHH-cCCCC
Confidence            344567788999999999999999999999999843                3999999999999999999996 99999


Q ss_pred             CeecccccccccccChhHHHHHHH-HcCC-CcccCC
Q 048459           94 PFRCSVDDCHASYRRKDHLTRHLL-RHQG-KLFKCP  127 (362)
Q Consensus        94 ~~~C~~~~C~~~f~~~~~l~~H~~-~h~~-~~~~C~  127 (362)
                      +|.|.+  |++.|.....|..|++ .|.+ ++|.+.
T Consensus        69 ~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           69 KLTCLE--CMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             GGEEGG--GTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             CccCcc--ccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            999966  9999999999999997 7776 788775

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.6e-17  Score=118.92  Aligned_cols=82  Identities=28%  Similarity=0.533  Sum_probs=52.5

Q ss_pred             CCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCC--CCeec
Q 048459           20 RDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLE--RPFRC   97 (362)
Q Consensus        20 ~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C   97 (362)
                      .++++|.|.+|++.|.+...|..|++.|+++.              +|.|++|++.|.+...|..|++.|++.  ++|.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C   68 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEK--------------PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC   68 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSC--------------SEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCC--------------CCcCCCCCCccCCHHHHHHHHHHhcCCCCCceEC
Confidence            45566666666666666666666666665542              366666666666666666666666665  56666


Q ss_pred             ccccccccccChhHHHHHHH
Q 048459           98 SVDDCHASYRRKDHLTRHLL  117 (362)
Q Consensus        98 ~~~~C~~~f~~~~~l~~H~~  117 (362)
                      .+  |++.|.+...|..|++
T Consensus        69 ~~--C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           69 QS--CGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             SS--SCCCBSSHHHHHHHHH
T ss_pred             CC--ccchhCCHHHHHHHHH
Confidence            44  6666666666666664

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.7e-17  Score=122.27  Aligned_cols=88  Identities=27%  Similarity=0.478  Sum_probs=77.0

Q ss_pred             CCCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCee
Q 048459           17 PKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFR   96 (362)
Q Consensus        17 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   96 (362)
                      +.+.++++|.| .|++.|.+...|..|++.|+...              +|.|++|++.|.+...|.+|++.|.++++|.
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~--------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   67 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLR--------------PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE   67 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCC--------------SEECTTTSCEESSSHHHHHHHTTTCCCCCEE
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCc--------------CccCCCCCcccCCHHHHHHHHHHcCCCCCee
Confidence            45678889999 89999999999999999888753              4899999999999999999999999999999


Q ss_pred             cccccccccccChhHHHHHHHHcCC
Q 048459           97 CSVDDCHASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus        97 C~~~~C~~~f~~~~~l~~H~~~h~~  121 (362)
                      |.+  |++.|.....|..|++.|+.
T Consensus        68 C~~--C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           68 CNI--CAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             CSS--SCCEESCHHHHHHHHHHHHH
T ss_pred             CCC--CcchhcCHHHHHHHHHHccc
Confidence            965  99999999999999988763

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=3.8e-17  Score=120.78  Aligned_cols=86  Identities=16%  Similarity=0.239  Sum_probs=67.2

Q ss_pred             cccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCccc-chhHHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHH
Q 048459          198 CSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQ-LKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVK  276 (362)
Q Consensus       198 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~-~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~  276 (362)
                      |.|+.|++.|.....|..|+++|..+|.|++|++.| ....|..|+. |.++   ++|.|  +.|++.|.+...|..|++
T Consensus        17 ~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~-H~~~---~~~~C--~~C~~~f~~~~~L~~H~~   90 (107)
T 1wjp_A           17 YQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES-KCEY---KKLTC--LECMRTFKSSFSIWRHQV   90 (107)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHH-HCST---GGGEE--GGGTEECSSHHHHHHHHH
T ss_pred             eECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHH-cCCC---CCccC--ccccchhCCHHHHHHHHH
Confidence            466777777777777777777766677788888777 5677788874 7665   57999  669999999999999987


Q ss_pred             hhcCCCcccccCC
Q 048459          277 AVHYEIKPFACSF  289 (362)
Q Consensus       277 ~~H~~~~~~~C~~  289 (362)
                      .+|+++++|.|..
T Consensus        91 ~~H~~~~~~~~~~  103 (107)
T 1wjp_A           91 EVHNQNNMAPTSG  103 (107)
T ss_dssp             HTSCCCCCCCCCC
T ss_pred             HHcCCCCCCCCCC
Confidence            7899999888865

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=6.9e-17  Score=116.88  Aligned_cols=85  Identities=27%  Similarity=0.557  Sum_probs=76.2

Q ss_pred             CCCccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhH
Q 048459           62 KGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGN  140 (362)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~  140 (362)
                      .+.++|.|++|++.|.+...|..|++.|.++++|.|.+  |++.|.....|..|++.|.+ ++|.|.+  |++.|.+...
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~   79 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKT--CDYAAADSSSLNKHLRIHSDERPFKCQI--CPYASRNSSQ   79 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSS--SCCEESSHHHHHHHHHHSCCCCCEECSS--SSCEESSHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCC--CCCccCCHHHHHHHHHHhCCCCCccCCC--CCCccCCHHH
Confidence            34577999999999999999999999999999999965  99999999999999999987 8899987  9999999999


Q ss_pred             HHHHHHHhcC
Q 048459          141 MKRHVKELHH  150 (362)
Q Consensus       141 l~~H~~~~h~  150 (362)
                      |..|++.++.
T Consensus        80 l~~H~~~h~~   89 (96)
T 2dmd_A           80 LTVHLRSHTG   89 (96)
T ss_dssp             HHHHHTTCCS
T ss_pred             HHHHHHHhcC
Confidence            9999986554

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.68  E-value=2.6e-17  Score=115.35  Aligned_cols=80  Identities=24%  Similarity=0.508  Sum_probs=71.3

Q ss_pred             CcCCCCCCccc-chhHHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchh
Q 048459          223 YIPCEICGSMQ-LKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHV  301 (362)
Q Consensus       223 ~~~C~~C~~~~-~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~  301 (362)
                      +|.|++|++.| +...|..|+++|.++   ++|.|  +.|++.|.+...|..|++ .|.++++|.|.+  |++.|.+...
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~---~~~~C--~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~   72 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDT---RPYPC--QYCGKRFHQKSDMKKHTF-IHTGEKPHKCQV--CGKAFSQSSN   72 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTC---CCEEC--SSSCCEESSHHHHHHHHH-HHHTCCCEECTT--TSCEESSHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCC---CCeeC--CcCChhhCCHHHHHHHHH-HhcCCCCCcCCC--cchhhCChHH
Confidence            46788888888 677888888888876   56999  779999999999999998 899999999999  9999999999


Q ss_pred             hhhhhhccC
Q 048459          302 RDNHEKSGH  310 (362)
Q Consensus       302 l~~H~~~~h  310 (362)
                      |..|+++|+
T Consensus        73 l~~H~~~H~   81 (82)
T 2kmk_A           73 LITHSRKHT   81 (82)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhhC
Confidence            999999875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.68  E-value=1.1e-16  Score=116.69  Aligned_cols=93  Identities=34%  Similarity=0.665  Sum_probs=80.6

Q ss_pred             ccCCCCCCCCCcccccc--ccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccc--ccccccCChhHHHHHHHh
Q 048459           13 LEERPKSRDVRRYYCDY--CGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCE--ECGASFKKPAYLKQHMLS   88 (362)
Q Consensus        13 ~~~~~~~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~   88 (362)
                      ....+.....++|.|.+  |++.|.....|..|++.|++..              +|.|+  .|++.|.+...|.+|++.
T Consensus         4 ~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~--------------~~~C~~~~C~~~f~~~~~l~~H~~~   69 (100)
T 2ebt_A            4 GSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEK--------------PYKCTWEGCDWRFARSDELTRHYRK   69 (100)
T ss_dssp             CCCCCCCCSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCC--------------CEECCSSSCCCEESSHHHHHHHHHH
T ss_pred             CCCCcccccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCC--------------CeeCCCCCCCCccCCHHHHHHHHHH
Confidence            34455666788899997  9999999999999999988764              49996  699999999999999999


Q ss_pred             ccCCCCeecccccccccccChhHHHHHHHHcCC
Q 048459           89 HLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus        89 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  121 (362)
                      |+++++|.|.+  |++.|.....|..|+++|.+
T Consensus        70 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           70 HTGAKPFQCGV--CNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             HTSCCSCBCSS--SCCBCSSHHHHHHHHHHHCC
T ss_pred             hCCCCCeECCC--CcCccCCHHHHHHHHHHhCC
Confidence            99999999966  99999999999999998863

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.68  E-value=1.4e-16  Score=117.49  Aligned_cols=84  Identities=35%  Similarity=0.634  Sum_probs=74.5

Q ss_pred             CCCccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhH
Q 048459           62 KGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGN  140 (362)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~  140 (362)
                      .+.++|.|+.|++.|.+...|..|++.|.++++|.|.+  |++.|.....|..|++.|.+ ++|.|..  |++.|.+...
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~   88 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKPFKCQE--CGKGFCQSRT   88 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSS--SCCBCSCHHHHHHHGGGSCCCCTTSCSS--SCCCCSSHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCC--ccchhCCHHHHHHHHHHhCCCCCeECCC--cCCcccCHHH
Confidence            45677999999999999999999999999999999965  99999999999999999887 8899987  9999999999


Q ss_pred             HHHHHHHhc
Q 048459          141 MKRHVKELH  149 (362)
Q Consensus       141 l~~H~~~~h  149 (362)
                      |..|++.++
T Consensus        89 L~~H~~~H~   97 (106)
T 2ee8_A           89 LAVHKTLHM   97 (106)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            999988555

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.67  E-value=1.5e-16  Score=114.80  Aligned_cols=84  Identities=35%  Similarity=0.773  Sum_probs=74.3

Q ss_pred             CCccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC---CcccCCccCCchhccChh
Q 048459           63 GVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG---KLFKCPIENCNREFTIQG  139 (362)
Q Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~~~C~~~~C~~~f~~~~  139 (362)
                      +.++|.|+.|++.|.+...|..|++.|.++++|.|.+  |++.|.+...|..|++.|++   ++|.|..  |++.|.+..
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~~~~   79 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFSRPD   79 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSS--SCCEESCHHHHHHHHHHHCCCCCSSBCCSS--SCCCBSSHH
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCC--CCCccCCHHHHHHHHHHhcCCCCCceECCC--ccchhCCHH
Confidence            4577999999999999999999999999999999965  99999999999999999886   6899987  999999999


Q ss_pred             HHHHHHHHhcC
Q 048459          140 NMKRHVKELHH  150 (362)
Q Consensus       140 ~l~~H~~~~h~  150 (362)
                      .|..|++..|.
T Consensus        80 ~L~~H~~~~H~   90 (95)
T 2yt9_A           80 HLNGHIKQVHS   90 (95)
T ss_dssp             HHHHHHHHTSC
T ss_pred             HHHHHHHHhcC
Confidence            99999876775

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.66  E-value=1.3e-16  Score=113.89  Aligned_cols=82  Identities=35%  Similarity=0.741  Sum_probs=56.3

Q ss_pred             Ccccccc--ccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhH
Q 048459           64 VQCNTCE--ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGN  140 (362)
Q Consensus        64 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~  140 (362)
                      +++|.|+  .|++.|.+...|..|++.|.++++|.|..  |++.|.+...|..|++.|.+ ++|.|+.  |++.|.+...
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~   77 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDE   77 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTT--TCCEESCHHHHHHHHHHHHCCCCEECTT--TCCEESSHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCC--CCcccCCHHHHHHHHHHcCCCCCccCCC--CCchhCCHHH
Confidence            4567776  47777777777777777777777777744  77777777777777777665 6677765  7777777777


Q ss_pred             HHHHHHHhc
Q 048459          141 MKRHVKELH  149 (362)
Q Consensus       141 l~~H~~~~h  149 (362)
                      |..|++.++
T Consensus        78 l~~H~~~H~   86 (90)
T 1a1h_A           78 RKRHTKIHL   86 (90)
T ss_dssp             HHHHHGGGG
T ss_pred             HHHHHHHhc
Confidence            777766443

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.64  E-value=4.5e-17  Score=115.80  Aligned_cols=82  Identities=21%  Similarity=0.366  Sum_probs=76.9

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCCCcccCCccCCchhccChhHHHHH
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRH  144 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~~~C~~~f~~~~~l~~H  144 (362)
                      ++|.|++|++.|.+...|..|+++|.++++|.|..  |++.|.....|..|++.|++.+|.|..  |++.|.+...|..|
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~c~~--C~~~f~~~~~L~~H   77 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHRDIQHILPILEDK--VEELLSKNYHLENE   77 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTT--TCCEESSHHHHHHHHHHHTHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCC--CCCccCCHHHHHHHHHHhCCCcchHHH--HHHHHHHHhhhHHH
Confidence            56999999999999999999999999999999965  999999999999999999988999987  99999999999999


Q ss_pred             HHHhcC
Q 048459          145 VKELHH  150 (362)
Q Consensus       145 ~~~~h~  150 (362)
                      ++.+|.
T Consensus        78 ~~~~h~   83 (88)
T 1llm_C           78 VARLKK   83 (88)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.63  E-value=2.7e-16  Score=112.02  Aligned_cols=82  Identities=27%  Similarity=0.579  Sum_probs=71.4

Q ss_pred             CCcCCCC--CCccc-chhHHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceecc
Q 048459          222 QYIPCEI--CGSMQ-LKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAF  298 (362)
Q Consensus       222 ~~~~C~~--C~~~~-~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~  298 (362)
                      +.|.|++  |++.| +...|..|+++|.++   ++|.|.+++|++.|.+...|..|++ .|.++++|.|++  |++.|.+
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~---~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~   77 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGE---KPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQK--CDRAFSR   77 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSS---CCEECCSTTTCCEESSHHHHHHHHH-HHHCCCCEECSS--SSCEESS
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCC---CCcCCCCCCCCCccCCHHHHHHHHH-HcCCCCCccCCC--CCcccCC
Confidence            4577887  88887 677788888888876   5699954479999999999999998 999999999999  9999999


Q ss_pred             chhhhhhhhcc
Q 048459          299 KHVRDNHEKSG  309 (362)
Q Consensus       299 ~~~l~~H~~~~  309 (362)
                      ...|..|+++|
T Consensus        78 ~~~l~~H~~~H   88 (89)
T 2wbs_A           78 SDHLALHMKRH   88 (89)
T ss_dssp             HHHHHHHGGGG
T ss_pred             HHHHHHHHHhh
Confidence            99999999986

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.63  E-value=2.6e-16  Score=112.09  Aligned_cols=83  Identities=35%  Similarity=0.727  Sum_probs=66.0

Q ss_pred             CCCcccccc--ccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccc--ccccccCChhHHHHHHHhccCCCCee
Q 048459           21 DVRRYYCDY--CGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCE--ECGASFKKPAYLKQHMLSHLLERPFR   96 (362)
Q Consensus        21 ~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~   96 (362)
                      ..++|.|.+  |++.|.+...|..|++.|++..              +|.|+  .|++.|.+...|.+|++.|+++++|.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~--------------~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~   67 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEK--------------PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ   67 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTTSCSSC--------------CEECCSTTTCCEESSHHHHHHHHHHHHCCCCEE
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCC--------------CcCCCCCCCCCccCCHHHHHHHHHHcCCCCCcc
Confidence            356788888  8888888888888888877653              38886  58888888888888888888888888


Q ss_pred             cccccccccccChhHHHHHHHHc
Q 048459           97 CSVDDCHASYRRKDHLTRHLLRH  119 (362)
Q Consensus        97 C~~~~C~~~f~~~~~l~~H~~~h  119 (362)
                      |..  |++.|.+...|..|+++|
T Consensus        68 C~~--C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           68 CQK--CDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CSS--SSCEESSHHHHHHHGGGG
T ss_pred             CCC--CCcccCCHHHHHHHHHhh
Confidence            855  888888888888888776

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.63  E-value=2.1e-16  Score=102.37  Aligned_cols=57  Identities=25%  Similarity=0.578  Sum_probs=30.0

Q ss_pred             CCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCC
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      +|||.|.+||+.|...+.|..|+++|.+++              +|.|++|++.|.....|.+|+++|+|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ek--------------p~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYR--------------PRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCC--------------CEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCc--------------CeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            345555555555555555555555555442              255555555555555555555555543

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.62  E-value=1.4e-15  Score=110.73  Aligned_cols=85  Identities=33%  Similarity=0.740  Sum_probs=75.0

Q ss_pred             CCCccccccc--cccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccCh
Q 048459           62 KGVQCNTCEE--CGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQ  138 (362)
Q Consensus        62 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~  138 (362)
                      ...++|.|..  |++.|.+...|..|++.|.++++|.|.++.|++.|.....|..|++.|.+ ++|.|..  |++.|.+.
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~   88 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV--CNRSFSRS   88 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSS--SCCBCSSH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCC--CcCccCCH
Confidence            4567799996  99999999999999999999999999644699999999999999999988 8899987  99999999


Q ss_pred             hHHHHHHHHh
Q 048459          139 GNMKRHVKEL  148 (362)
Q Consensus       139 ~~l~~H~~~~  148 (362)
                      ..|..|++.+
T Consensus        89 ~~l~~H~~~H   98 (100)
T 2ebt_A           89 DHLALHMKRH   98 (100)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998854

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=6.2e-16  Score=114.83  Aligned_cols=83  Identities=35%  Similarity=0.751  Sum_probs=71.4

Q ss_pred             CCccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHH
Q 048459           63 GVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNM  141 (362)
Q Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l  141 (362)
                      +.++|.| .|++.|.+...|..|++.|.++++|.|.+  |++.|.+...|..|++.|.+ ++|.|.+  |++.|.+...|
T Consensus         7 ~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l   81 (110)
T 2csh_A            7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSF   81 (110)
T ss_dssp             CCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTT--TSCEESSSHHHHHHHTTTCCCCCEECSS--SCCEESCHHHH
T ss_pred             CCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCC--CCcccCCHHHHHHHHHHcCCCCCeeCCC--CcchhcCHHHH
Confidence            4567899 89999999999999999998888999965  99999999999999988887 8899987  99999999999


Q ss_pred             HHHHHHhcC
Q 048459          142 KRHVKELHH  150 (362)
Q Consensus       142 ~~H~~~~h~  150 (362)
                      ..|++.++.
T Consensus        82 ~~H~~~~~~   90 (110)
T 2csh_A           82 HRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHccc
Confidence            999886664

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=2.3e-16  Score=118.19  Aligned_cols=89  Identities=13%  Similarity=0.295  Sum_probs=67.3

Q ss_pred             CCCCCCccccccccccccchHHHHHHHHh--hccccccccCCCCCcCCCcccccccccccc--CChhHHHHHHHhccCCC
Q 048459           18 KSRDVRRYYCDYCGICRSKKSLILSHIAS--HHKEDEERVDGDGETKGVQCNTCEECGASF--KKPAYLKQHMLSHLLER   93 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f--~~~~~l~~H~~~h~~~~   93 (362)
                      .+.++++|.|.+|++.|.+...|..|++.  |....             ..+.|+.|++.|  .+...|.+|+++|.+++
T Consensus        13 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~-------------~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~   79 (115)
T 2dmi_A           13 IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDD-------------NHETDNNNPKRWSKPRKRSLLEMEGKEDAQK   79 (115)
T ss_dssp             CCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCS-------------CCCCCCCCCSCCSSCCCCCCCCCCCSCCCCS
T ss_pred             eeCCCCCEECCccCchhcCHHHHHHHHHHhCccccC-------------CCccCCCCCcccccccHHHHHHHhhccCCCc
Confidence            45677888888888888888888888887  43321             124588888877  77788888888888888


Q ss_pred             CeecccccccccccChhHHHHHHHHcCC
Q 048459           94 PFRCSVDDCHASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus        94 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~  121 (362)
                      ||.|.+  |++.|.....|..|++.|+.
T Consensus        80 ~~~C~~--C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           80 VLKCMY--CGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             SCBCSS--SCCBCSSHHHHHHHHHHTTT
T ss_pred             ceECCC--CCCccCCHHHHHHHHHHhCC
Confidence            888855  88888888888888887765

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=2.7e-17  Score=123.28  Aligned_cols=82  Identities=21%  Similarity=0.375  Sum_probs=52.1

Q ss_pred             ccccccccccccCChhHHHHHHHh--ccCCCCee-cccccccccc--cChhHHHHHHHHcCC-CcccCCccCCchhccCh
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLS--HLLERPFR-CSVDDCHASY--RRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQ  138 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~-C~~~~C~~~f--~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~  138 (362)
                      ++|.|+.|++.|.+...|..|++.  |.+..++. |.+  |++.|  .....|..|+++|.+ +||.|.+  |++.|.+.
T Consensus        18 ~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~--C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~--C~k~f~~~   93 (115)
T 2dmi_A           18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNN--NPKRWSKPRKRSLLEMEGKEDAQKVLKCMY--CGHSFESL   93 (115)
T ss_dssp             CSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCC--CCSCCSSCCCCCCCCCCCSCCCCSSCBCSS--SCCBCSSH
T ss_pred             CCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCC--CCcccccccHHHHHHHhhccCCCcceECCC--CCCccCCH
Confidence            336677777777666667667666  55555433 644  66666  666666666666665 6666665  66666666


Q ss_pred             hHHHHHHHHhcC
Q 048459          139 GNMKRHVKELHH  150 (362)
Q Consensus       139 ~~l~~H~~~~h~  150 (362)
                      ..|..|++.+|.
T Consensus        94 ~~L~~H~~~hh~  105 (115)
T 2dmi_A           94 QDLSVHMIKTKH  105 (115)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCC
Confidence            666666665553

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.60  E-value=1.4e-16  Score=113.20  Aligned_cols=83  Identities=20%  Similarity=0.365  Sum_probs=75.9

Q ss_pred             CCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeeccccc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDD  101 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~  101 (362)
                      +++|.|.+|++.|.+.+.|..|++.|+++.              +|.|+.|++.|.+...|.+|++.|++ .+|.|..  
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~--------------~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~--   63 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEK--------------PFACDICGRKFARSDERKRHRDIQHI-LPILEDK--   63 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCC--------------CEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHH--
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCC--------------CccCCCCCCccCCHHHHHHHHHHhCC-CcchHHH--
Confidence            478999999999999999999999998864              49999999999999999999999885 7899955  


Q ss_pred             ccccccChhHHHHHHHHcCC
Q 048459          102 CHASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus       102 C~~~f~~~~~l~~H~~~h~~  121 (362)
                      |++.|.+...|..|++.+++
T Consensus        64 C~~~f~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           64 VEELLSKNYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHH
Confidence            99999999999999987653

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.59  E-value=6.6e-16  Score=100.06  Aligned_cols=56  Identities=23%  Similarity=0.440  Sum_probs=52.1

Q ss_pred             CCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccCc
Q 048459          251 SERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHH  311 (362)
Q Consensus       251 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  311 (362)
                      ++||.|  ++|++.|...+.|..|++ +|++++||+|.+  ||++|.+.+.|..|+++|.+
T Consensus         2 EKpy~C--~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~--C~k~F~~~~~L~~H~~~Htg   57 (60)
T 4gzn_C            2 ERPFFC--NFCGKTYRDASGLSRHRR-AHLGYRPRSCPE--CGKCFRDQSEVNRHLKVHQN   57 (60)
T ss_dssp             CCCEEC--TTTCCEESSHHHHHHHHH-HHHTCCCEECTT--TCCEESSHHHHHHHGGGGSC
T ss_pred             CCCccC--CCCCCEeCCHHHHHHHHH-HhCCCcCeECCC--CCCCcCCHHHHHHHhCccCC
Confidence            378999  779999999999999998 999999999999  99999999999999998763

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.57  E-value=2.8e-15  Score=105.61  Aligned_cols=78  Identities=24%  Similarity=0.465  Sum_probs=62.9

Q ss_pred             cccc--ccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccc--cccccCChhHHHHHHHhccCCCCeeccc
Q 048459           24 RYYC--DYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEE--CGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        24 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ||.|  ..|++.|.+.+.|..|++.|.++.              +|.|+.  |++.|.+...|.+|+++|++   |.|  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~--------------~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C--   61 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQL--------------PYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC--   61 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTC--------------CEECCSTTCCCEESSHHHHHHHHHHHHS---EEC--
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCC--------------CeeCCCCCCcCccCCHHHHHHHHHHhCC---CCC--
Confidence            5788  778888888888888888887753              388877  88888888888888888877   888  


Q ss_pred             cc---ccccccChhHHHHHHHHcC
Q 048459          100 DD---CHASYRRKDHLTRHLLRHQ  120 (362)
Q Consensus       100 ~~---C~~~f~~~~~l~~H~~~h~  120 (362)
                      +.   |++.|.+...|..|++.|+
T Consensus        62 ~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           62 KKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCCCCCccCCHHHHHHHHHhcC
Confidence            55   8888888888888888764

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.55  E-value=5.1e-15  Score=104.28  Aligned_cols=82  Identities=32%  Similarity=0.616  Sum_probs=72.3

Q ss_pred             cccc--cccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCCCcccCCccC-CchhccChhHHH
Q 048459           66 CNTC--EECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIEN-CNREFTIQGNMK  142 (362)
Q Consensus        66 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~~~-C~~~f~~~~~l~  142 (362)
                      +|.|  +.|++.|.+...|..|+++|.++++|.|.+++|++.|.+...|..|+++|++  |.|.... |++.|.+...|.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f~~~~~l~   78 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYL   78 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEESSHHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCccCCHHHHH
Confidence            4889  8999999999999999999999999999444499999999999999999987  8995433 999999999999


Q ss_pred             HHHHHhc
Q 048459          143 RHVKELH  149 (362)
Q Consensus       143 ~H~~~~h  149 (362)
                      .|++.+|
T Consensus        79 ~H~~~hh   85 (85)
T 2j7j_A           79 KHVAECH   85 (85)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhcC
Confidence            9998654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=6.2e-15  Score=102.31  Aligned_cols=73  Identities=30%  Similarity=0.512  Sum_probs=60.5

Q ss_pred             CCCCCcccccc--ccccccchHHHHHHHH-hhccccccccCCCCCcCCCccccccc--cccccCChhHHHHHHHhccCCC
Q 048459           19 SRDVRRYYCDY--CGICRSKKSLILSHIA-SHHKEDEERVDGDGETKGVQCNTCEE--CGASFKKPAYLKQHMLSHLLER   93 (362)
Q Consensus        19 ~~~~k~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~   93 (362)
                      ..++++|.|..  |++.|.+...|..|++ .|.++              ++|.|+.  |++.|.+...|.+|+++|++++
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~--------------~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   67 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ--------------KSFSCPEPACGKSFNFKKHLKEHMKLHSDTR   67 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSC--------------CCEECSCTTTCCEESSHHHHHHHHHHHHTSC
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCC--------------CCeECCCCCCcCccCCHHHHHHHHHHhCCCC
Confidence            35677888887  9999999999999988 57665              3488988  9999999999999999998888


Q ss_pred             Ceeccccccccccc
Q 048459           94 PFRCSVDDCHASYR  107 (362)
Q Consensus        94 ~~~C~~~~C~~~f~  107 (362)
                      +|.|.+  |++.|.
T Consensus        68 ~~~C~~--C~k~F~   79 (79)
T 2dlk_A           68 DYICEF--SGPSSG   79 (79)
T ss_dssp             CCSCCS--SSCCCC
T ss_pred             CeeCCC--CCCCCC
Confidence            999955  988874

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.52  E-value=1.3e-14  Score=99.24  Aligned_cols=68  Identities=32%  Similarity=0.552  Sum_probs=52.7

Q ss_pred             cCCCCCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCC
Q 048459           14 EERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLER   93 (362)
Q Consensus        14 ~~~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (362)
                      .......++++|.|..|++.|.....|..|++.|+++.              +|.|++|++.|.+...|.+|+++|++++
T Consensus         7 ~~~~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~--------------~~~C~~C~k~f~~~~~L~~H~~~H~~~k   72 (74)
T 2lce_A            7 HHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK--------------PYRCNICGAQFNRPANLKTHTRIHSGEK   72 (74)
T ss_dssp             ----CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCC--------------SEECTTTCCEESCHHHHHHHHHHHCCSC
T ss_pred             ccccccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCC--------------CEECCCCCchhCCHHHHHHHHHhcCCCC
Confidence            34445567788888888888888888888888887753              4888888888888888888888888887


Q ss_pred             Ce
Q 048459           94 PF   95 (362)
Q Consensus        94 ~~   95 (362)
                      ||
T Consensus        73 p~   74 (74)
T 2lce_A           73 PY   74 (74)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.5e-14  Score=99.85  Aligned_cols=66  Identities=33%  Similarity=0.535  Sum_probs=54.2

Q ss_pred             CCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           18 KSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      ...++++|.|.+|++.|.....|..|++.|+++              ++|.|++|++.|.+...|.+|+++|++++||.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE--------------KPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS--------------CSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCC--------------cCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            455678888888888888888888888888765              348888888888888888888888888888876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=3e-14  Score=98.82  Aligned_cols=72  Identities=26%  Similarity=0.589  Sum_probs=60.3

Q ss_pred             CCccccccc--cccccCChhHHHHHHH-hccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhcc
Q 048459           63 GVQCNTCEE--CGASFKKPAYLKQHML-SHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFT  136 (362)
Q Consensus        63 ~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~  136 (362)
                      +.++|.|..  |++.|.+...|..|++ .|.++++|.|.++.|++.|.+...|..|+++|++ ++|.|.+  |++.|.
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~F~   79 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF--SGPSSG   79 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS--SSCCCC
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCC--CCCCCC
Confidence            456688886  9999999999999998 6888899999444499999999999999998887 8899987  988773

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=4.3e-14  Score=102.19  Aligned_cols=73  Identities=22%  Similarity=0.360  Sum_probs=59.9

Q ss_pred             CCCCCCCCccccccccccccchHHHHHHHHh-hccccccccCCCCCcCCCccccccccccccCChhHHHHH-HHhccCCC
Q 048459           16 RPKSRDVRRYYCDYCGICRSKKSLILSHIAS-HHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQH-MLSHLLER   93 (362)
Q Consensus        16 ~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~   93 (362)
                      ....+|+++|.|..|++.|...+.|..|++. |.+..           +.++|.|++|++.|.+...|.+| +++|++++
T Consensus        10 ~~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~-----------~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgek   78 (102)
T 2ghf_A           10 QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVV-----------LNSSYVCVECNFLTKRYDALSEHNLKYHPGEE   78 (102)
T ss_dssp             TTCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCC-----------CSCCEEETTTTEEESSTHHHHTHHHHTSTTCC
T ss_pred             cccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCC-----------CCCCcCCCCCCcccCCHHHHHHHHHHhcCCCC
Confidence            4456788999999999999999999999975 63310           13559999999999999999999 78999999


Q ss_pred             Ceeccc
Q 048459           94 PFRCSV   99 (362)
Q Consensus        94 ~~~C~~   99 (362)
                      ||.|.+
T Consensus        79 py~C~~   84 (102)
T 2ghf_A           79 NFKLTM   84 (102)
T ss_dssp             CEEEEE
T ss_pred             CeeCCc
Confidence            999965

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.45  E-value=2.7e-14  Score=109.13  Aligned_cols=117  Identities=19%  Similarity=0.308  Sum_probs=87.4

Q ss_pred             CCCCCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccC------ChhHHHHHHHh
Q 048459           15 ERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFK------KPAYLKQHMLS   88 (362)
Q Consensus        15 ~~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~------~~~~l~~H~~~   88 (362)
                      +...+.|.++|.|...+....  ..+..|.+.+.....           .+.+.|++|.+.|.      ....|..|+ .
T Consensus         3 ~~~~~~~~k~~~~~~k~~~~~--~s~ee~~~~~~l~~~-----------~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~   68 (129)
T 2wbt_A            3 ESDVDSGSKKYLSNHKGIFIH--VTLEELKRYHQLTPE-----------QKRLIRAIVKTLIHNPQLLDESSYLYRLL-A   68 (129)
T ss_dssp             --CCCTTCCGGGGCSSCEEEE--CCHHHHHHHTTSCHH-----------HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-H
T ss_pred             cchhcccccccccccCCeeee--ecHHhhhccccCChh-----------hCcccchhhhcccCCCcccCCHHHHHHHH-H
Confidence            345667899999987654432  234455444332211           23478888887776      556677776 6


Q ss_pred             ccCCCCeecccccccccccChhHHHHHHHHcCCCcccCCccCCchhccChhHHHHHHHHhcC
Q 048459           89 HLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKELHH  150 (362)
Q Consensus        89 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  150 (362)
                      |++++||.|.+  |++.|.....|..|+++| .+||.|..  |++.|.....|..|++.+|+
T Consensus        69 h~~~~~~~C~~--C~k~f~~~~~l~~H~~~H-~~~~~C~~--C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           69 SKAISQFVCPL--CLMPFSSSVSLKQHIRYT-EHTKVCPV--CKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             HHHHCSEECTT--TCCEESSHHHHHHHHHHT-CCCCBCTT--TCCBCSSHHHHHHHHHHTTC
T ss_pred             hCCCCCeECCC--CCcccCCHhHHHHHHHHC-CCCCCCCC--CCcccCCHHHHHHHHHHHCC
Confidence            88899999965  999999999999999999 78999988  99999999999999997775

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=9.8e-14  Score=93.72  Aligned_cols=65  Identities=20%  Similarity=0.262  Sum_probs=47.2

Q ss_pred             CCCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCe
Q 048459           17 PKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPF   95 (362)
Q Consensus        17 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   95 (362)
                      +.+.++++|.|.+|++.|.....|..|++.|+++.              +|.|++|++.|.+...|.+|+++|++++|.
T Consensus         2 ss~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~--------------~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDR--------------PFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CSCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSC--------------SEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCC--------------CEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            34566777777777777777777777777776653              377777777777777777777777776653

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.6e-13  Score=94.53  Aligned_cols=63  Identities=29%  Similarity=0.605  Sum_probs=58.6

Q ss_pred             CCCccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccC
Q 048459           62 KGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC  126 (362)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C  126 (362)
                      .+.++|.|++|++.|.+...|.+|+++|.++++|.|.+  |++.|.....|..|+++|++ +||.|
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDE--CGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSS--SCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCC--CCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            45688999999999999999999999999999999966  99999999999999999998 88887

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=3.2e-13  Score=95.13  Aligned_cols=77  Identities=17%  Similarity=0.257  Sum_probs=55.3

Q ss_pred             CCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           18 KSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      .+.++++|.|.+|++.|.....|..|++.++....          ..++|.|+.|++.|.+...|..|+++|+++.++.|
T Consensus         9 ~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~----------~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~   78 (86)
T 1x6h_A            9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF----------VPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEG   78 (86)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSC----------CCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCC
T ss_pred             eecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcC----------CCcceECCCCCChhCCHHHHHHHHHHccCCCCccc
Confidence            45667778888888888888888888777665421          11347788888888888888888888888778877


Q ss_pred             ccccccccc
Q 048459           98 SVDDCHASY  106 (362)
Q Consensus        98 ~~~~C~~~f  106 (362)
                      ..  |+..|
T Consensus        79 ~~--~~~~~   85 (86)
T 1x6h_A           79 EN--SGPSS   85 (86)
T ss_dssp             CC--CCCCC
T ss_pred             CC--CCCCC
Confidence            44  76654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=2.5e-13  Score=97.64  Aligned_cols=75  Identities=21%  Similarity=0.253  Sum_probs=56.1

Q ss_pred             cccchHHHHHHHHhhccccccccCCCCCcCCCcccccccccccc-CChhHHHHHHHhccCCCCeecccccccccccChhH
Q 048459           33 CRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASF-KKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDH  111 (362)
Q Consensus        33 ~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~  111 (362)
                      .|.....|..|++.+..+.              +|.|+.|++.| .+...|..|+++| ++++|.|.+  |++.|.....
T Consensus        15 ~~~~~~~~~~~~~~~~~~~--------------~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~--Cgk~F~~~~~   77 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKG--------------SVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHH--CGKQLRSLAG   77 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTS--------------CEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSS--SCCCCSSHHH
T ss_pred             CCCCchHHHHHHHHhcCCC--------------CcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCC--CCCeeCCHHH
Confidence            5566777777777777653              37788888888 7888888888888 777888854  8888888888


Q ss_pred             HHHH-HHHcCCCcc
Q 048459          112 LTRH-LLRHQGKLF  124 (362)
Q Consensus       112 l~~H-~~~h~~~~~  124 (362)
                      |..| +++|.++||
T Consensus        78 L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           78 MKYHVMANHNSLPS   91 (96)
T ss_dssp             HHHHHHHHTCCCSS
T ss_pred             HHHHhHHhcCCCCC
Confidence            8888 777776554

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=9e-14  Score=98.03  Aligned_cols=66  Identities=20%  Similarity=0.412  Sum_probs=43.5

Q ss_pred             ccccccccccccCChhHHHHHHHhccCC----CCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchh
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLE----RPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNRE  134 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~  134 (362)
                      ++|.|++|++.|.+...|.+|++.|++.    ++|.|.+  |++.|.....|..|++.|++ +++.|..  |+..
T Consensus        14 k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~~~~--~~~~   84 (86)
T 1x6h_A           14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--CGKTFTRRNTMARHADNCAGPDGVEGEN--SGPS   84 (86)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSS--SCCEESCHHHHHHHHHHCCCCCSCCCCC--CCCC
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCC--CCChhCCHHHHHHHHHHccCCCCcccCC--CCCC
Confidence            3377777777777777777777665544    5677744  77777777777777777766 6666654  6554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.40  E-value=4.7e-13  Score=91.42  Aligned_cols=61  Identities=33%  Similarity=0.670  Sum_probs=56.0

Q ss_pred             CCCccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-Ccc
Q 048459           62 KGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLF  124 (362)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~  124 (362)
                      .+.++|.|+.|++.|.+...|.+|++.|.++++|.|.+  |++.|.....|..|+++|++ +||
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTT--TCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCC--CCchhCCHHHHHHHHHhcCCCCCC
Confidence            56788999999999999999999999999999999966  99999999999999999987 664

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.39  E-value=3.7e-13  Score=93.73  Aligned_cols=62  Identities=24%  Similarity=0.350  Sum_probs=43.7

Q ss_pred             CCCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHH-hccCC
Q 048459           17 PKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHML-SHLLE   92 (362)
Q Consensus        17 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~   92 (362)
                      ......++|.|.+|++.|.+...|.+|+++|++++              +|.|++|++.|.+...|.+|++ .|.++
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k--------------~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQ--------------VFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSS--------------SEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCC--------------ccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            34445667777777777777777777777777653              3777777777777777777764 46554

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=5.3e-13  Score=90.59  Aligned_cols=61  Identities=28%  Similarity=0.462  Sum_probs=39.4

Q ss_pred             CCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCC
Q 048459           18 KSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      .+.++++|.|.+|++.|.....|..|++.|+.+              ++|.|++|++.|.+...|.+|+++|+++
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~--------------~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE--------------KPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS--------------CCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCCC--------------CCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            455666666666666666666666666666554              2366666666666666666666666554

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.38  E-value=3.6e-13  Score=86.85  Aligned_cols=56  Identities=32%  Similarity=0.686  Sum_probs=49.2

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  121 (362)
                      .++|.|+.|++.|.+...|..|+++|++++||.|.+  |++.|.....|..|++.|++
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEF--CEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSS--SSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCC--CcchhCCHHHHHHHHHHhcC
Confidence            467999999999999999999999999999999965  99999999999999998863

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=5.8e-14  Score=96.81  Aligned_cols=68  Identities=24%  Similarity=0.384  Sum_probs=60.2

Q ss_pred             HHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCC-cccccCCCCCCceeccchhhhhhhhccCcc
Q 048459          238 IKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEI-KPFACSFFGCGMRFAFKHVRDNHEKSGHHV  312 (362)
Q Consensus       238 l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~  312 (362)
                      |..|+++|.++   ++|.|  +.|++.|.+...|..|++..|.++ ++|+|++  |++.|.+...|..|++++|..
T Consensus         3 ~~~H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            3 SGSSGRTHSGE---KPYEC--YICHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCCSCC---CSEEC--TTTCCEESCHHHHHHHHHHHSSSSCSSEECSS--SSCEESSHHHHHHHHHHTSCC
T ss_pred             CCccccccCCC---CCeEC--CCcCchhCCHHHHHHHHHHhcCCCCCccCCCC--CCCccCCHHHHHHHHHHhCCC
Confidence            34578888887   67999  779999999999999997678875 8999999  999999999999999998864

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=4.1e-13  Score=96.99  Aligned_cols=67  Identities=25%  Similarity=0.424  Sum_probs=60.0

Q ss_pred             CcCCCccccccccccccCChhHHHHHHH-hc---cCCCCeecccccccccccChhHHHHH-HHHcCC-CcccCCc
Q 048459           60 ETKGVQCNTCEECGASFKKPAYLKQHML-SH---LLERPFRCSVDDCHASYRRKDHLTRH-LLRHQG-KLFKCPI  128 (362)
Q Consensus        60 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~h~~-~~~~C~~  128 (362)
                      ...++++|.|+.|++.|.+...|.+|++ .|   .+++||.|..  |++.|.....|..| +++|.+ +||.|.+
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~--Cgk~F~~~~~L~~H~~r~Htgekpy~C~~   84 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVE--CNFLTKRYDALSEHNLKYHPGEENFKLTM   84 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETT--TTEEESSTHHHHTHHHHTSTTCCCEEEEE
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCC--CCcccCCHHHHHHHHHHhcCCCCCeeCCc
Confidence            3467888999999999999999999998 58   5688999955  99999999999999 899998 9999986

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=2.5e-13  Score=90.51  Aligned_cols=63  Identities=29%  Similarity=0.485  Sum_probs=55.4

Q ss_pred             HhhccCCCCCceeecccCccccccCchhHHHHHHhhc-CCCcccccCCCCCCceeccchhhhhhhhccCcc
Q 048459          243 RTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVH-YEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHV  312 (362)
Q Consensus       243 ~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H-~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~  312 (362)
                      ++|.++   ++|.|  +.|++.|.+...|..|++..| .++++|+|++  |++.|.+...|..|++++|++
T Consensus         3 ~~h~~~---k~~~C--~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~i   66 (66)
T 2drp_A            3 FTKEGE---HTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHKI   66 (66)
T ss_dssp             CEEEET---TEEEC--TTTCCEESSHHHHHHHHHHHSSSSCCCEECTT--TCCEESCHHHHHHHHHHHTC-
T ss_pred             cccCCC---cceEC--CCCcchhCCHHHHHHHHHHHcCCCCcCeECCC--CCCccCCHHHHHHHHHHHcCC
Confidence            356665   67999  779999999999999998558 6999999999  999999999999999998863

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=1.7e-13  Score=99.22  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=33.1

Q ss_pred             hHHHHHHHhccCCCCeeccccccccccc-ChhHHHHHHHHcCC--CcccCCccCCchhccChhHHHHHHHHhc
Q 048459           80 AYLKQHMLSHLLERPFRCSVDDCHASYR-RKDHLTRHLLRHQG--KLFKCPIENCNREFTIQGNMKRHVKELH  149 (362)
Q Consensus        80 ~~l~~H~~~h~~~~~~~C~~~~C~~~f~-~~~~l~~H~~~h~~--~~~~C~~~~C~~~f~~~~~l~~H~~~~h  149 (362)
                      ..+..|++.|.++++|.|.+  |++.|. ....|..|+++|++  ++|.|.+  |++.|.....|..|++.+|
T Consensus        10 ~~~~~h~~~h~~~~~~~C~~--C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~--C~k~F~~~~~L~~H~~~h~   78 (98)
T 2gqj_A           10 GPEEQWQRAIHERGEAVCPT--CNVVTRKTLVGLKKHMEVCQKLQDALKCQH--CRKQFKSKAGLNYHTMAEH   78 (98)
T ss_dssp             CSCSHHHHTTTTTSCCCCTT--TCCCCSSCSHHHHHHHHHHHHHHHHHSCSS--SCCCCSCHHHHHHHHHHHS
T ss_pred             CcHHHHHHHhccCCCcCCCC--CCCChhhhHHHHHHHHHHHcCCCCCEECCC--CCCccCCHHHHHHHHHHHc
Confidence            33444555555555555533  555555 55555555555443  4455544  5555555555555554444

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.34  E-value=8.6e-13  Score=91.87  Aligned_cols=55  Identities=22%  Similarity=0.395  Sum_probs=49.9

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccCc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHH  311 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  311 (362)
                      ++|.|  ++|++.|.+...|.+|++ +|++++||+|.+  |+++|.++..|.+|++..|.
T Consensus        27 ~~h~C--~~Cgk~F~~~~~L~~H~~-~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           27 ECHLC--PVCGESFASKGAQERHLR-LLHAAQVFPCKY--CPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             TTEEC--TTSCCEESSHHHHHHHHH-TTSCSSSEECTT--SSCEESSHHHHHHHHHTTCT
T ss_pred             CCEEC--CCCCCCcCcHHHHhhhhh-hccCCCccCCCC--CCCEeCCHHHHHHhCcccCc
Confidence            57999  779999999999999998 899999999999  99999999999999876553

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.34  E-value=1.6e-13  Score=104.86  Aligned_cols=54  Identities=26%  Similarity=0.386  Sum_probs=29.1

Q ss_pred             CCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhhhCC
Q 048459          161 QKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQ  222 (362)
Q Consensus       161 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  222 (362)
                      +++|.|++  |++.|.....|..|++.|  +++    |.|+.|++.|.....|.+|++++|+
T Consensus        72 ~~~~~C~~--C~k~f~~~~~l~~H~~~H--~~~----~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           72 ISQFVCPL--CLMPFSSSVSLKQHIRYT--EHT----KVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             HCSEECTT--TCCEESSHHHHHHHHHHT--CCC----CBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             CCCeECCC--CCcccCCHhHHHHHHHHC--CCC----CCCCCCCcccCCHHHHHHHHHHHCC
Confidence            35555555  555555555555555555  222    3455555555555555555555443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.33  E-value=4.9e-13  Score=86.24  Aligned_cols=55  Identities=29%  Similarity=0.485  Sum_probs=49.3

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccCc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHH  311 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  311 (362)
                      ++|.|  +.|++.|.+...|..|++ .|+++++|.|++  |++.|.+...|..|+++||+
T Consensus         3 ~~~~C--~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            3 SSREC--SYCGKFFRSNYYLNIHLR-THTGEKPYKCEF--CEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             --CBC--TTTCCBCSCHHHHHHHHH-HHHCCCCEECSS--SSCEESSHHHHHHHHHHHC-
T ss_pred             CCccC--CCCcchhCChHHHHHHHH-HcCCCCCcCCCC--CcchhCCHHHHHHHHHHhcC
Confidence            57999  779999999999999998 899999999999  99999999999999998873

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.33  E-value=1.4e-12  Score=84.02  Aligned_cols=52  Identities=40%  Similarity=0.865  Sum_probs=28.7

Q ss_pred             ccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcC
Q 048459           67 NTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQ  120 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~  120 (362)
                      |.|+.|++.|.+...|..|+++|+++++|.|..  |++.|.+...|..|+++|+
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSS--SSCEESSHHHHHHHHHSSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCC--CCchhcCHHHHHHHHHHhc
Confidence            455555555555555555555555555555533  5555555555555555554

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=1.5e-12  Score=87.81  Aligned_cols=57  Identities=28%  Similarity=0.612  Sum_probs=48.1

Q ss_pred             CCccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC
Q 048459           63 GVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  121 (362)
                      +.++|.|++|++.|.+...|.+|+++|.++++|.|.+  |++.|.....|..|++.|++
T Consensus         6 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            6 SGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSS--SSCEESSHHHHHHHHHHHHS
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCC--CCCccCCHHHHHHHHHHHhC
Confidence            4567888888888888888888888888888888855  88888888888888888876

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=1.9e-12  Score=92.97  Aligned_cols=68  Identities=15%  Similarity=0.230  Sum_probs=58.1

Q ss_pred             chhHHHHHHHhhccCCCCCceeecccCccccc-cCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhh-hhccC
Q 048459          234 LKKNIKRHVRTHEARDLSERIKCQFKGCLLSF-STNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNH-EKSGH  310 (362)
Q Consensus       234 ~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f-~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~~h  310 (362)
                      ....|..|++.+.++   ++|.|  +.|++.| .+...|..|++ +| ++++|.|.+  |++.|.++..|..| +++|.
T Consensus        18 ~~~~~~~~~~~~~~~---~~~~C--~~C~k~F~~~~~~L~~H~~-~h-~~k~~~C~~--Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           18 AGSLEEQWYLEIVDK---GSVSC--PTCQAVGRKTIEGLKKHME-NC-KQEMFTCHH--CGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             TTCHHHHHHHHHHHT---SCEEC--TTTCSCEESSHHHHHHHHH-HH-CCCCCCCSS--SCCCCSSHHHHHHHHHHHTC
T ss_pred             CchHHHHHHHHhcCC---CCcCC--CCCCCCcccCHHHHHHHHH-HH-CCCCeECCC--CCCeeCCHHHHHHHhHHhcC
Confidence            456677788888776   57999  7799999 89999999998 88 999999999  99999999999999 77664

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=3.1e-13  Score=97.78  Aligned_cols=71  Identities=20%  Similarity=0.315  Sum_probs=62.6

Q ss_pred             chhHHHHHHHhhccCCCCCceeecccCcccccc-CchhHHHHHHhhcCC-CcccccCCCCCCceeccchhhhhhhhccCc
Q 048459          234 LKKNIKRHVRTHEARDLSERIKCQFKGCLLSFS-TNSNLRQHVKAVHYE-IKPFACSFFGCGMRFAFKHVRDNHEKSGHH  311 (362)
Q Consensus       234 ~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~-~~~~L~~H~~~~H~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  311 (362)
                      ....+..|+++|.++   ++|.|  +.|++.|. +...|..|++ .|.+ +++|+|.+  |++.|.++..|..|+++||.
T Consensus         8 ~~~~~~~h~~~h~~~---~~~~C--~~C~k~f~~~~~~L~~H~~-~h~~~~~~~~C~~--C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A            8 PGGPEEQWQRAIHER---GEAVC--PTCNVVTRKTLVGLKKHME-VCQKLQDALKCQH--CRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             CCCSCSHHHHTTTTT---SCCCC--TTTCCCCSSCSHHHHHHHH-HHHHHHHHHSCSS--SCCCCSCHHHHHHHHHHHSC
T ss_pred             CCCcHHHHHHHhccC---CCcCC--CCCCCChhhhHHHHHHHHH-HHcCCCCCEECCC--CCCccCCHHHHHHHHHHHcC
Confidence            345577889999886   67999  77999999 9999999998 7888 99999999  99999999999999998875


Q ss_pred             c
Q 048459          312 V  312 (362)
Q Consensus       312 ~  312 (362)
                      .
T Consensus        80 ~   80 (98)
T 2gqj_A           80 A   80 (98)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.29  E-value=2.7e-12  Score=82.63  Aligned_cols=54  Identities=28%  Similarity=0.698  Sum_probs=48.4

Q ss_pred             ceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccCc
Q 048459          253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHH  311 (362)
Q Consensus       253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  311 (362)
                      +|.|  +.|++.|.+...|..|++ .|+++++|.|++  |++.|.+...|..|+++|+.
T Consensus         1 p~~C--~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYIC--EECGIRXKKPSMLKKHIR-THTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBC--TTTCCBCSSHHHHHHHHH-HTSSCCCEECSS--SSCEESSHHHHHHHHHSSSS
T ss_pred             CCcC--CCCcCcCCCHHHHHHHHH-hcCCCCCccCCC--CCchhcCHHHHHHHHHHhcc
Confidence            4788  779999999999999998 899999999999  99999999999999998874

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=1.9e-12  Score=87.84  Aligned_cols=61  Identities=31%  Similarity=0.486  Sum_probs=54.9

Q ss_pred             HhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccCc
Q 048459          243 RTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHH  311 (362)
Q Consensus       243 ~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  311 (362)
                      ++|.++   ++|.|  +.|++.|.+...|..|++ .|.++++|+|.+  |++.|.+...|..|+++|+.
T Consensus         7 ~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            7 GIHSGE---KPYGC--VECGKAFSRSSILVQHQR-VHTGEKPYKCLE--CGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CTTTTC---CCEEC--SSSCCEESSHHHHHHHHH-GGGCSCCEECSS--SCCEESSHHHHHHHHHHHHS
T ss_pred             cccCCC---CCccC--CCCCCccCCHHHHHHHHH-hcCCCCCeECCC--CCcccCCHHHHHHHHHhcCC
Confidence            456665   67999  779999999999999998 899999999999  99999999999999998764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=4.5e-12  Score=87.43  Aligned_cols=67  Identities=25%  Similarity=0.359  Sum_probs=48.0

Q ss_pred             CCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHH-hccCCCCee
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHML-SHLLERPFR   96 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~   96 (362)
                      +.++++|.|.+|++.|.....|..|++.|++..           +.++|.|++|++.|.+...|.+|++ .|.+..+..
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~-----------~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETV-----------AALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHT-----------TTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccC-----------CCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            457788888888888888888888888877521           1244888888888888888888874 455555543

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=1.8e-12  Score=89.27  Aligned_cols=66  Identities=24%  Similarity=0.616  Sum_probs=50.1

Q ss_pred             HHHHHHhccCCCCeecccccccccccChhHHHHHHH-HcCC--CcccCCccCCchhccChhHHHHHHHHhcCC
Q 048459           82 LKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLL-RHQG--KLFKCPIENCNREFTIQGNMKRHVKELHHE  151 (362)
Q Consensus        82 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~--~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~  151 (362)
                      |.+|+++|++++||.|.+  |++.|.....|..|++ .|.+  ++|.|+.  |++.|.+...|..|++.+|..
T Consensus         3 ~~~H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCCSCCCSEECTT--TCCEESCHHHHHHHHHHHSSSSCSSEECSS--SSCEESSHHHHHHHHHHTSCC
T ss_pred             CCccccccCCCCCeECCC--cCchhCCHHHHHHHHHHhcCCCCCccCCCC--CCCccCCHHHHHHHHHHhCCC
Confidence            445777788888888855  8888888888888876 4554  5788876  888888888888888877754

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=6.5e-12  Score=81.78  Aligned_cols=54  Identities=24%  Similarity=0.602  Sum_probs=47.8

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      ++|.|  +.|++.|.+...|..|++ .|+++++|.|++  |++.|.+...|..|++..|
T Consensus         1 k~~~C--~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H   54 (60)
T 2adr_A            1 RSFVC--EVCTRAFARQEHLKRHYR-SHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIH   54 (60)
T ss_dssp             CCBCC--TTTCCCBSCHHHHHHHHH-TTTSSCSEECTT--TCCEESSHHHHHHHHTTTS
T ss_pred             CcCcC--CCCccccCCHHHHHHHHH-HhCCCCCccCCC--CCCccCCHHHHHHHHHHHc
Confidence            36899  779999999999999998 899999999999  9999999999999985444

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=2.5e-12  Score=87.51  Aligned_cols=55  Identities=25%  Similarity=0.568  Sum_probs=50.9

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhcc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      ++|.|.++.|++.|.+...|..|++ .|.++++|+|++  |++.|.+...|..|+++|
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHH-HHHCCCCEECTT--TCCEESCHHHHHHHHTTC
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHH-hhCCCCCeECCC--CCchhCCHHHHHHHHHhc
Confidence            6799954479999999999999998 899999999999  999999999999999986

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=6.8e-12  Score=83.43  Aligned_cols=56  Identities=20%  Similarity=0.494  Sum_probs=42.0

Q ss_pred             CccccccccccccCChhHHHHHHHh-c-cCCCCeecccccccccccChhHHHHHHHHcCC
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLS-H-LLERPFRCSVDDCHASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  121 (362)
                      .++|.|+.|++.|.+...|..|++. | .++++|.|..  |++.|.+...|..|++.|++
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTT--TCCEESCHHHHHHHHHHHTC
T ss_pred             CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCC--CCCccCCHHHHHHHHHHHcC
Confidence            3557888888888888888888776 6 4777788854  88888888888888777653

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=7.5e-12  Score=81.46  Aligned_cols=55  Identities=36%  Similarity=0.770  Sum_probs=48.0

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHH-HHcCC
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHL-LRHQG  121 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~  121 (362)
                      ++|.|+.|++.|.+...|.+|+++|+++++|.|.+  |++.|.+...|..|+ +.|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTT--TCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCC--CCCccCCHHHHHHHHHHHcCC
Confidence            35899999999999999999999999999999965  999999999999997 56654

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.4e-11  Score=88.33  Aligned_cols=71  Identities=21%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             CCccccccccccccchHHHHHHHHh-hccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIAS-HHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ...|.|..|++.|.....|..|++. |.+..+...      ..-..|.|+.|++.|.+...|.+|+++|++++||.|.
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~------~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN------HVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSC------CCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCc------cceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            3446788888888888888888887 544321000      0001277888888888888888888888888888773

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.19  E-value=2.1e-11  Score=82.76  Aligned_cols=62  Identities=23%  Similarity=0.372  Sum_probs=54.9

Q ss_pred             CCCCCCCCCccccc--cccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhcc
Q 048459           15 ERPKSRDVRRYYCD--YCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHL   90 (362)
Q Consensus        15 ~~~~~~~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   90 (362)
                      ....+.++++|.|.  .|++.|.....|..|++.|.++.              +|.|+.|++.|.+...|.+|+++|+
T Consensus        10 ~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~--------------~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQK--------------PFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             TSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCC--------------CEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             hhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCC--------------CeECCCCCchhCCHHHHHHHHHhcC
Confidence            34456788999998  59999999999999999998864              4999999999999999999999874

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=5.7e-11  Score=85.16  Aligned_cols=59  Identities=22%  Similarity=0.287  Sum_probs=52.2

Q ss_pred             ccccccccccCChhHHHHHHHh-ccCCCC--------eecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           67 NTCEECGASFKKPAYLKQHMLS-HLLERP--------FRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |.|+.|++.|.+...|.+|++. |.++++        |.|..  |++.|.....|..|+++|++ +||.|.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR--EGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSS--TTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCC--CCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            7899999999999999999998 888877        88855  99999999999999999887 888885

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1e-11  Score=85.62  Aligned_cols=56  Identities=27%  Similarity=0.561  Sum_probs=49.2

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCC---CcccccCCCCCCceeccchhhhhhhhccCcc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYE---IKPFACSFFGCGMRFAFKHVRDNHEKSGHHV  312 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~---~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~  312 (362)
                      ++|.|  +.|++.|.+...|..|++ .|.+   +++|.|.+  |++.|.+...|..|++.+|..
T Consensus         6 k~~~C--~~C~k~f~~~~~L~~H~~-~h~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            6 SGLQC--EICGFTCRQKASLNWHQR-KHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CCEEC--SSSCCEESSHHHHHHHHH-HHHHHTTTCCEECTT--TCCEESSHHHHHHHHHHTSTT
T ss_pred             cCeEC--CCCCCeeCCHHHHHHHHH-HhhccCCCcccCCCC--CCchhCCHHHHHHHHHHhCCC
Confidence            67999  779999999999999998 7775   88999999  999999999999999877754

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=3.1e-11  Score=80.17  Aligned_cols=59  Identities=22%  Similarity=0.243  Sum_probs=36.4

Q ss_pred             CCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccc-ccccccCChhHHHHHHHhccCCC
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCE-ECGASFKKPAYLKQHMLSHLLER   93 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~-~C~~~f~~~~~l~~H~~~h~~~~   93 (362)
                      .-+.++|.|..|++.|. .+.|..|+++ .++              ++|.|+ .|++.|.....|..|+++|.+..
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~--------------~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPR--------------LPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSS--------------SEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCC--------------cCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            34556666666666666 6666666665 443              336666 66666666666666666665443

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.12  E-value=5.3e-11  Score=80.53  Aligned_cols=58  Identities=34%  Similarity=0.733  Sum_probs=52.1

Q ss_pred             CCCccccccc--cccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHc
Q 048459           62 KGVQCNTCEE--CGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRH  119 (362)
Q Consensus        62 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h  119 (362)
                      ...++|.|..  |++.|.+...|.+|+++|+++++|.|.++.|++.|.....|..|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            4567899988  999999999999999999999999996446999999999999998765

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=9.1e-11  Score=77.88  Aligned_cols=53  Identities=21%  Similarity=0.347  Sum_probs=48.8

Q ss_pred             CCceeecccCccccccCchhHHHHHHhhcCCCcccccC-CCCCCceeccchhhhhhhhccC
Q 048459          251 SERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS-FFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       251 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~-~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      .++|.|  +.|++.|. ...|..|++ . ++++||+|+ .  ||+.|..++.|..|+++|-
T Consensus         8 ~~~~~C--~~C~k~f~-~~~L~~H~~-~-~~~~p~~C~~~--C~k~f~~~~~L~~H~~~hc   61 (66)
T 2eod_A            8 KRTQPC--TYCTKEFV-FDTIQSHQY-Q-CPRLPVACPNQ--CGVGTVAREDLPGHLKDSC   61 (66)
T ss_dssp             CCEEEC--SSSCCEEE-HHHHHHHHH-H-CSSSEEECTTC--CSCCEEETTTHHHHHHTTS
T ss_pred             CCCeec--cccCCccC-HHHHHHHHH-H-cCCcCccCCcc--cCcccccHHHHHHHHHhhc
Confidence            478999  77999999 999999998 5 999999999 9  9999999999999999864

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.07  E-value=1.4e-10  Score=78.35  Aligned_cols=62  Identities=26%  Similarity=0.432  Sum_probs=54.1

Q ss_pred             cCCCCCCCCCcccccc--ccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccc--cccccCChhHHHHHHHhc
Q 048459           14 EERPKSRDVRRYYCDY--CGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEE--CGASFKKPAYLKQHMLSH   89 (362)
Q Consensus        14 ~~~~~~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h   89 (362)
                      .........++|.|.+  |++.|.....|..|++.|+++.              +|.|++  |++.|.....|.+|+++|
T Consensus         7 ~~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~--------------~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A            7 GPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEK--------------PFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSC--------------SEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCCCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCC--------------CccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3445566788999999  9999999999999999998864              499965  999999999999999875

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.4e-12  Score=88.71  Aligned_cols=60  Identities=18%  Similarity=0.282  Sum_probs=46.7

Q ss_pred             hHHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          236 KNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       236 ~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      ..|..|+++|.++   ++|.|  +.|++.|.+...|..        +++|.|++  |++.|.+...|..|+++|+
T Consensus         4 ~~l~~H~~~h~~~---~~~~C--~~C~k~f~~~~~l~~--------~~~~~C~~--C~~~f~~~~~l~~H~~~H~   63 (73)
T 2ctu_A            4 GSSGKRQKIHLGD---RSQKC--SKCGIIFIRRSTLSR--------RKTPMCEK--CRKDSCQEAALNKDEGNES   63 (73)
T ss_dssp             CSCCCCCCCCCCC---SEEEC--SSSCCEEECCCCCCC--------SSSCCCHH--HHHTCSCCCSSCCCSSCCC
T ss_pred             hhHHHHHHHhCCC---CCeeC--CcccchhCCHHHhCc--------CCCCCCCC--CChhhcCHHHHHHHHHhhc
Confidence            3466677777775   56888  668888888877765        67888888  8888888888888888765

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=8.3e-12  Score=84.77  Aligned_cols=61  Identities=20%  Similarity=0.231  Sum_probs=48.4

Q ss_pred             CCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           18 KSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      .+.++++|.|.+|++.|...+.|..       +              ++|.|+.|++.|.+...|.+|+++|+++++|.|
T Consensus        12 ~h~~~~~~~C~~C~k~f~~~~~l~~-------~--------------~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C   70 (73)
T 2ctu_A           12 IHLGDRSQKCSKCGIIFIRRSTLSR-------R--------------KTPMCEKCRKDSCQEAALNKDEGNESGKKTSGP   70 (73)
T ss_dssp             CCCCCSEEECSSSCCEEECCCCCCC-------S--------------SSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSC
T ss_pred             HhCCCCCeeCCcccchhCCHHHhCc-------C--------------CCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCC
Confidence            4567788888888888888777665       1              348888888888888888888888888888888


Q ss_pred             cc
Q 048459           98 SV   99 (362)
Q Consensus        98 ~~   99 (362)
                      .+
T Consensus        71 ~~   72 (73)
T 2ctu_A           71 SS   72 (73)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.97  E-value=5.5e-10  Score=70.72  Aligned_cols=49  Identities=20%  Similarity=0.337  Sum_probs=43.3

Q ss_pred             CCCCCCCCccccccccccccchHHHHHHHH-hhccccccccCCCCCcCCCccccccccccccCC
Q 048459           16 RPKSRDVRRYYCDYCGICRSKKSLILSHIA-SHHKEDEERVDGDGETKGVQCNTCEECGASFKK   78 (362)
Q Consensus        16 ~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~   78 (362)
                      ...+.++++|.|.+|++.|.....|.+|++ .|.++              ++|.|++|++.|.+
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~--------------k~~~C~~C~k~F~~   53 (54)
T 2eps_A            4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE--------------RPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCC--------------CCCCSSSSCCSSCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCC--------------CCccCCCCCCCCCC
Confidence            456778899999999999999999999997 78776              45999999999986

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.94  E-value=6.6e-10  Score=70.35  Aligned_cols=44  Identities=25%  Similarity=0.416  Sum_probs=40.3

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFK  299 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~  299 (362)
                      ++|.|  +.|++.|.+...|..|++.+|+++++|+|.+  |++.|.++
T Consensus        11 k~~~C--~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~--C~k~F~~~   54 (54)
T 2eps_A           11 KPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGPSSG   54 (54)
T ss_dssp             CCEEC--SSSCCEESSHHHHHHHHHHTSCCCCCCCSSS--SCCSSCCC
T ss_pred             CCeEC--CCCCcccCCHHHHHHHHHHhcCCCCCccCCC--CCCCCCCC
Confidence            67999  7799999999999999976899999999999  99999863

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=3.4e-10  Score=68.32  Aligned_cols=43  Identities=28%  Similarity=0.333  Sum_probs=37.0

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+.+.|..|++ .|+++++|+|++
T Consensus         1 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   43 (44)
T 2emx_A            1 GSSGSSGE---KPFGC--SCCEKAFSSKSYLLVHQQ-THAEEKPSGPSS   43 (44)
T ss_dssp             CCCCCSSC---CCEEC--SSSSCEESSHHHHHHHHH-HHTSSCSCSCCC
T ss_pred             CCCCcCCC---cCccC--CCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            45667776   57999  779999999999999998 899999999988

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4.7e-10  Score=68.40  Aligned_cols=44  Identities=27%  Similarity=0.359  Sum_probs=38.1

Q ss_pred             HHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          240 RHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       240 ~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      .|+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||.|++
T Consensus         2 ~H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytj_A            2 SSGSSGTGE---KPYIC--AECGKAFTIRSNLIKHQK-IHTKQKPSGPSS   45 (46)
T ss_dssp             CSSCTTSSC---CSEEC--SSSCCEESSHHHHHHHHH-HTSCCCCSSCSC
T ss_pred             CcccCCCCC---cCeEC--CCCChhhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            367778776   57999  779999999999999998 899999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.7e-10  Score=68.87  Aligned_cols=44  Identities=27%  Similarity=0.326  Sum_probs=38.5

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.+.+.|..|++ +|++++||+|++  |
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~--C   46 (46)
T 2emm_A            3 SGSSGTGE---RPHKC--NECGKSFIQSAHLIQHQR-IHTGEKPSGPSS--G   46 (46)
T ss_dssp             CCSCSSCC---CSEEC--SSSCCEESSHHHHHHHHH-HHSCCCTTSSSC--C
T ss_pred             CcCCcCCC---CCeeC--CCCChhhCCHHHHHHHHH-HhCCCCCCCCCC--C
Confidence            66777776   57999  779999999999999998 899999999998  7

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.90  E-value=3.8e-10  Score=68.82  Aligned_cols=44  Identities=30%  Similarity=0.323  Sum_probs=38.4

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++  |
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~--C   46 (46)
T 2ely_A            3 SGSSGTGE---KPFKC--VECGKGFSRRSALNVHHK-LHTGEKPSGPSS--G   46 (46)
T ss_dssp             CCCCCCCC---CSBCC--SSSCCCBSSTTHHHHHHH-HHSCCSSCSCCC--C
T ss_pred             CCCCCCCC---CCccc--CccCcccCCHHHHHHHHH-HcCCCCCCCCCC--C
Confidence            56777776   57999  779999999999999998 899999999988  7

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.90  E-value=8.1e-11  Score=76.99  Aligned_cols=58  Identities=19%  Similarity=0.335  Sum_probs=49.3

Q ss_pred             HHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhh
Q 048459          238 IKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHE  306 (362)
Q Consensus       238 l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~  306 (362)
                      |..|+++|.++   ++|.|  +.|++.|.....|.   + .|++++||.|++  ||+.|....++..+.
T Consensus         2 L~~h~~~H~~~---k~~~C--~~C~k~F~~~~~l~---~-~H~~~k~~~C~~--C~k~f~~~~~~~~~~   59 (62)
T 1vd4_A            2 IETDERDSTNR---ASFKC--PVCSSTFTDLEANQ---L-FDPMTGTFRCTF--CHTEVEEDESAMPKK   59 (62)
T ss_dssp             CCCCSSSCCSS---SEEEC--SSSCCEEEHHHHHH---H-EETTTTEEBCSS--SCCBCEECTTCSCCC
T ss_pred             hhhHHHHcCCC---CCccC--CCCCchhccHHHhH---h-hcCCCCCEECCC--CCCccccCccccccc
Confidence            34577788886   67999  77999999988886   4 899999999999  999999998887654

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3.8e-10  Score=68.84  Aligned_cols=44  Identities=27%  Similarity=0.416  Sum_probs=38.4

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++  |
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~--C   46 (46)
T 2eoe_A            3 SGSSGTGE---KPYKC--NECGKVFTQNSHLANHQR-IHTGVKPSGPSS--G   46 (46)
T ss_dssp             CSSCCCCC---CSSEE--TTTTEECSSHHHHHHHHG-GGSCCCSCSSCC--C
T ss_pred             CCCCCCCC---CCeEC--CCcChhhCCHHHHHHHHH-HcCCCCCCCCCC--C
Confidence            66777776   57999  779999999999999997 899999999998  7

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3.7e-10  Score=68.89  Aligned_cols=44  Identities=27%  Similarity=0.347  Sum_probs=37.8

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.+.+.|..|++ +|++++||+|++  |
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~--C   46 (46)
T 2ene_A            3 SGSSGTGE---KPYKC--NECGKVFRHNSYLSRHQR-IHTGEKPSGPSS--G   46 (46)
T ss_dssp             CCSSCCCS---SSEEC--SSSCCEESSHHHHHHHHT-TTCCCCCCSCCC--C
T ss_pred             cccCCCCC---CCeEC--CCCCchhCChHHHHHHHh-hcCCCCCCCCCC--C
Confidence            66777776   57999  779999999999999998 899999999988  7

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4.2e-10  Score=68.62  Aligned_cols=43  Identities=23%  Similarity=0.322  Sum_probs=37.1

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eml_A            3 SGSSGTGE---KPYEC--SVCGKAFSHRQSLSVHQR-IHSGKKPSGPSS   45 (46)
T ss_dssp             CCCCCSSC---CSEEC--SSSCCEESSHHHHHHHHG-GGSSCCCSCSSC
T ss_pred             ccCCcCCC---CCeeC--CCcCCccCCHHHHHHHHH-HhcCCCCCCCCC
Confidence            66777776   56999  779999999999999988 899999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3.6e-10  Score=68.93  Aligned_cols=43  Identities=26%  Similarity=0.369  Sum_probs=36.4

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emf_A            3 SGSSGTGG---KHFEC--TECGKAFTRKSTLSMHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSSS---CCEEC--SSSCCEESCHHHHHHHGG-GTSCSSCSCCCC
T ss_pred             cccccCCC---CCeEC--CCCCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677776   56999  679999999999999987 899999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4e-10  Score=68.73  Aligned_cols=43  Identities=28%  Similarity=0.393  Sum_probs=37.7

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+.+.|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytk_A            3 SGSSGSGE---KPYKC--NECGKVFTQNSHLTNHWR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSS---CSEEC--SSSCCEESSHHHHHHHHH-HHSSSSCSSCCC
T ss_pred             CcccCCCC---CCEeC--CcCCCccCCHHHHHHHHH-HHCCCCCCCCCC
Confidence            56777776   57999  779999999999999998 899999999998

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4.1e-10  Score=68.69  Aligned_cols=43  Identities=28%  Similarity=0.327  Sum_probs=37.6

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eq4_A            3 SGSSGTGE---KLYNC--KECGKSFSRAPCLLKHER-LHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCC---CCCCB--TTTTBCCSCHHHHHHHHH-HCCSSSCCCCCC
T ss_pred             CcccCCCC---CCeEC--CCCCCccCchHHHHHHHH-hcCCCCCCCCCC
Confidence            66777776   57999  779999999999999998 899999999988

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.8e-10  Score=68.35  Aligned_cols=43  Identities=26%  Similarity=0.329  Sum_probs=37.3

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep2_A            3 SGSSGTGE---KPYEC--SICGKSFTKKSQLHVHQQ-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSSCSSCC---CSEEC--SSSCCEESSHHHHHHHHH-TTSSCCSCCSCC
T ss_pred             CCCCCCCC---cCcCC--CCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            66777776   57999  779999999999999998 899999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.89  E-value=4.2e-10  Score=68.66  Aligned_cols=43  Identities=37%  Similarity=0.462  Sum_probs=37.1

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ema_A            3 SGSSGTGE---KRYKC--NECGKVFSRNSQLSQHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             SCSSCTTS---CCEEC--SSSCCEESSHHHHHHHHT-GGGCCCCCSSSC
T ss_pred             CccCCCCC---cCcCC--CCCcchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            66777776   57999  779999999999999987 899999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.4e-10  Score=68.55  Aligned_cols=43  Identities=23%  Similarity=0.295  Sum_probs=37.5

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emy_A            3 SGSSGTGE---NPYEC--HECGKAFSRKYQLISHQR-THAGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSS---CCEEC--SSSCCEESSHHHHHHHHH-HHTTSCCSCSSC
T ss_pred             CCCCCCCC---cCcCC--CCCCcccCcHHHHHHHHH-HcCCCCCCCCCC
Confidence            66777776   57999  779999999999999998 899999999988

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.1e-10  Score=68.71  Aligned_cols=43  Identities=28%  Similarity=0.349  Sum_probs=37.2

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+.+.|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq0_A            3 SGSSGTGE---KPYKC--HECGKVFRRNSHLARHQL-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCTTCC---CCEEC--TTTCCEESSHHHHHHHHT-TTCCCCCSCCSC
T ss_pred             CCcCCCCC---CCeEC--CCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            56677776   67999  679999999999999987 899999999988

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3.6e-10  Score=68.97  Aligned_cols=43  Identities=28%  Similarity=0.387  Sum_probs=36.4

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytn_A            3 SGSSGTGK---KPYKC--NECGKVFTQNSHLARHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCC---SSCBC--TTTCCBCSSHHHHHHHGG-GTSCCCCCSCCC
T ss_pred             CCcCCCCC---cCeEC--CCCCCeeCCHHHHHHHhh-hcCCCCCCCCCC
Confidence            56677775   56999  669999999999999987 899999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.89  E-value=4.1e-10  Score=68.67  Aligned_cols=43  Identities=30%  Similarity=0.394  Sum_probs=37.5

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+.+.|..|++ +|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emk_A            3 SGSSGTGE---KPYEC--KECGKAFSQTTHLIQHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSS---CSCBC--SSSCCBCSCHHHHHHHHH-HHSSCCCSSCCC
T ss_pred             CCCccCCC---CceEC--CCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            66777776   56999  779999999999999998 899999999988

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.89  E-value=3.7e-10  Score=68.88  Aligned_cols=43  Identities=26%  Similarity=0.332  Sum_probs=36.7

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+.+.|..|++ +|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2el4_A            3 SGSSGTGV---KPYGC--SQCAKTFSLKSQLIVHQR-SHTGVKPSGPSS   45 (46)
T ss_dssp             CCCCSCCC---CSEEC--SSSSCEESSHHHHHHHGG-GSSSCCCSCCTT
T ss_pred             cccCCCCC---CceEC--CCCCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677776   56999  679999999999999987 899999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4e-10  Score=68.72  Aligned_cols=43  Identities=26%  Similarity=0.356  Sum_probs=37.3

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|+++++|+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2epz_A            3 SGSSGTGE---KPFDC--IDCGKAFSDHIGLNQHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCC---CSBCC--TTTCCCBSSHHHHHHHHT-TTTTCCCCSSCC
T ss_pred             CCCCcCCC---CCeEC--CCCCceeCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56777776   56999  779999999999999998 899999999988

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.89  E-value=3.8e-10  Score=68.86  Aligned_cols=43  Identities=33%  Similarity=0.431  Sum_probs=36.8

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+.+.|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em0_A            3 SGSSGMGE---KTWKC--RECDMCFSQASSLRLHQN-VHVGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCC---CCCCC--SSSCCCCSSHHHHHHHGG-GGSSSSCSCSSC
T ss_pred             CcCccCCC---cCeEC--CCCCcccCCHHHHHHHHH-HcCCCCCcCCCC
Confidence            56677776   56999  779999999999999987 899999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=4.3e-10  Score=68.60  Aligned_cols=44  Identities=25%  Similarity=0.354  Sum_probs=37.8

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++  |
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C   46 (46)
T 2em5_A            3 SGSSGSST---KSHQC--HECGRGFTLKSHLNQHQR-IHTGEKPSGPSS--G   46 (46)
T ss_dssp             CCCCCCCS---CSEEC--SSSCCEESSHHHHHHHHT-TTSCSCCSSCCC--C
T ss_pred             CcCCCCCC---CCeEC--CcCCCccCCHHHHHHHHH-HhCCCCCCCCCC--C
Confidence            66777776   57999  779999999999999987 899999999988  7

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.7e-10  Score=68.04  Aligned_cols=45  Identities=20%  Similarity=0.265  Sum_probs=38.7

Q ss_pred             HHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          240 RHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       240 ~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      .|+++|.++   ++|.|  +.|++.|.+...|..|++ .|+++++|+|++  |
T Consensus         2 ~H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C   46 (46)
T 2eme_A            2 SSGSSGSGE---KPYVC--DYCGKAFGLSAELVRHQR-IHTGEKPSGPSS--G   46 (46)
T ss_dssp             CCCCTTCCC---CSEEC--SSSCCEESSHHHHHHHHG-GGCCCSCCSSCC--C
T ss_pred             CCCCCCCCC---CCeEC--CCCChhhCCHHHHHHHHH-hcCCCCCCCCCC--C
Confidence            366778776   57999  779999999999999997 899999999988  7

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.2e-10  Score=68.19  Aligned_cols=43  Identities=23%  Similarity=0.246  Sum_probs=37.3

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|+++++|+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2epw_A            3 SGSSGTGE---KPCKC--TECGKAFCWKSQLIMHQR-THVDDKHSGPSS   45 (46)
T ss_dssp             CCCCCCCC---CSEEC--SSSCCEESSSHHHHHHHH-HCCSCCCSCCCC
T ss_pred             CcccCCCC---CCeeC--CCCCCccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            66777776   57999  779999999999999998 899999999988

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=4.9e-10  Score=68.34  Aligned_cols=43  Identities=30%  Similarity=0.344  Sum_probs=37.4

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||.|++
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eoq_A            3 SGSSGTGE---KPFKC--DICGKSFCGRSRLNRHSM-VHTAEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSS---CSCCC--SSSCCCCSSHHHHHHHHH-HTTCCCSSSCCC
T ss_pred             CCCCCCCC---CCcCC--CcCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            66777776   57999  679999999999999998 899999999988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=4.8e-10  Score=68.35  Aligned_cols=44  Identities=20%  Similarity=0.368  Sum_probs=38.5

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++  |
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C   46 (46)
T 2ytd_A            3 SGSSGSGE---KPYKC--SECGKAFHRHTHLNEHRR-IHTGYRPSGPSS--G   46 (46)
T ss_dssp             CCCCSCCC---CSEEC--SSSCCEESSHHHHHHHHH-HHTCCCSSCSSC--C
T ss_pred             CccccCCC---cCeEC--CCCCCeeCChHHHHHHHH-HcCCCCCCCCCC--C
Confidence            66777776   57999  779999999999999998 899999999998  7

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.6e-10  Score=68.92  Aligned_cols=43  Identities=26%  Similarity=0.285  Sum_probs=37.5

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+.+.|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emp_A            3 SGSSGTGV---KPYMC--NECGKAFSVYSSLTTHQV-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCSSCC---CSEEC--SSSCCEESCHHHHHHHHH-HHHCCSCCSCCC
T ss_pred             cccccCCC---cCeEC--CCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            66777776   57999  779999999999999998 899999999988

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=4.5e-10  Score=68.49  Aligned_cols=43  Identities=26%  Similarity=0.295  Sum_probs=36.6

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em7_A            3 SGSSGTGE---KPYKC--EECGKGFICRRDLYTHHM-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSCC---CSEEC--SSSCCEESCHHHHHHHGG-GGTTCCCSSTTC
T ss_pred             CCCCCCCC---cCccC--CCccchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677776   56999  779999999999999987 899999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.3e-10  Score=68.15  Aligned_cols=44  Identities=27%  Similarity=0.274  Sum_probs=37.9

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|+++++|+|++  |
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C   46 (46)
T 2eov_A            3 SGSSGTGE---KPYKC--SDCGKSFTWKSRLRIHQK-CHTGERHSGPSS--G   46 (46)
T ss_dssp             CCCCCSSC---CSCBC--SSSCCBCSSHHHHHHHHH-HHSCCSSCCSCC--C
T ss_pred             CCCCCCCC---CCccC--CccChhhCCHHHHHHHHH-hcCCCCCCCCCC--C
Confidence            66777776   56999  779999999999999987 899999999988  7

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.8e-10  Score=68.00  Aligned_cols=44  Identities=30%  Similarity=0.414  Sum_probs=37.6

Q ss_pred             HHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          240 RHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       240 ~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      .|+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         2 ~H~~~H~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2en1_A            2 SSGSSGSGE---KPFKC--EECGKRFTQNSQLHSHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CSTTCCCCC---CSEEE--TTTTEEESSHHHHHHHGG-GGSCCCCSCCCC
T ss_pred             CcccCCCCC---CCeeC--CCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            366778776   56999  779999999999999987 899999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.2e-10  Score=68.23  Aligned_cols=43  Identities=26%  Similarity=0.315  Sum_probs=36.8

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytq_A            3 SGSSGAGE---KPYGC--SECGKAFSSKSYLIIHMR-THSGEKPSGPSS   45 (46)
T ss_dssp             CSSCSSCC---CSCBC--SSSCCBCSCHHHHHHHHT-TTCCSCSSCCCC
T ss_pred             CCcCcCCC---CCcCC--CccChhhCChHHHHHHHH-HhCCCCCCCCCC
Confidence            56677776   56999  779999999999999987 899999999988

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=4.8e-10  Score=68.34  Aligned_cols=43  Identities=28%  Similarity=0.344  Sum_probs=36.7

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||.|++
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eop_A            3 SGSSGTGE---KPHEC--RECGKSFSFNSQLIVHQR-IHTGENPSGPSS   45 (46)
T ss_dssp             CCCSCCCC---CSCBC--TTTCCBCSSHHHHHHHHT-TTTTSCCSCCCC
T ss_pred             CccccCCC---CCeeC--CCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            56677776   56999  669999999999999987 899999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=4.1e-10  Score=68.67  Aligned_cols=43  Identities=28%  Similarity=0.330  Sum_probs=37.3

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emh_A            3 SGSSGTGE---RPYIC--TVCGKAFTDRSNLIKHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSCC---CSEEC--TTTCCEESSHHHHHHHHH-HHHCSSCSSSCC
T ss_pred             CCCCCCCC---CCcCC--CCCCchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            66777776   57999  669999999999999998 899999999988

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=6.7e-10  Score=67.71  Aligned_cols=44  Identities=27%  Similarity=0.305  Sum_probs=38.0

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++  |
T Consensus         3 h~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C   46 (46)
T 2enc_A            3 SGSSGSGE---KPFKC--EECGKGFYTNSQCYSHQR-SHSGEKPSGPSS--G   46 (46)
T ss_dssp             CSSCCCCC---CSEEC--SSSCCEESSHHHHHHHHH-HSCCSSCCSSCC--C
T ss_pred             CCCCCCCC---CCcCC--CCCCCcCCChHHHHHHHH-HhCCCCCCCCCC--C
Confidence            56677776   57999  779999999999999998 899999999988  7

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.7e-10  Score=68.04  Aligned_cols=44  Identities=25%  Similarity=0.286  Sum_probs=38.6

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++  |
T Consensus         3 h~~~H~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~--C   46 (46)
T 2en6_A            3 SGSSGSGE---KPYGC--NECGKTFSQKSILSAHQR-THTGEKPSGPSS--G   46 (46)
T ss_dssp             CSCCCCSS---CCEEE--TTTTEEESSHHHHHHHHH-HHSSCCCSSSCC--C
T ss_pred             CCCccCCC---cCeEC--CCCCcccCchHHHHHHHH-HcCCCCCCCCCC--C
Confidence            56778776   57999  779999999999999998 899999999998  7

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=4.8e-10  Score=68.34  Aligned_cols=43  Identities=28%  Similarity=0.396  Sum_probs=36.7

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ytr_A            3 SGSSGTGE---KPYKC--NECGKAFSQTSKLARHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSSC---CTTCC--TTTCCCCSSHHHHHHHHT-TTTTCSCCCSCC
T ss_pred             CCcCCCCC---cCcCC--CCCCCccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            66777776   56999  669999999999999987 899999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5e-10  Score=68.27  Aligned_cols=44  Identities=25%  Similarity=0.327  Sum_probs=38.1

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++  |
T Consensus         3 H~~~h~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C   46 (46)
T 2ysp_A            3 SGSSGTGE---KPYKC--EKCGKGYNSKFNLDMHQK-VHTGERPSGPSS--G   46 (46)
T ss_dssp             CCCCCSSC---CSEEE--TTTTEEESCHHHHHHHHT-TSCSCCSSCCSC--C
T ss_pred             CCcCCCCC---CCeEC--CCCCCccCCHHHHHHHHH-hhCCCCCCCCCC--C
Confidence            56677776   57999  779999999999999998 899999999988  7

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=5.6e-10  Score=68.05  Aligned_cols=43  Identities=26%  Similarity=0.247  Sum_probs=37.0

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ +|++++||+|++
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2en8_A            3 SGSSGSGE---KSHTC--DECGKNFCYISALRIHQR-VHMGEKCSGPSS   45 (46)
T ss_dssp             CCCCCCCC---SSEEC--TTTCCEESSHHHHHHHHT-TTCCSCSSCCSC
T ss_pred             ccccCCCC---CCeEC--CCcCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677776   57999  779999999999999987 899999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.86  E-value=5.5e-10  Score=68.10  Aligned_cols=43  Identities=30%  Similarity=0.322  Sum_probs=36.5

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em9_A            3 SGSSGTGE---KPYNC--KECGKSFRWASCLLKHQR-VHSGEKPSGPSS   45 (46)
T ss_dssp             SCCSCCCC---CSEEC--SSSCCEESSHHHHHHHGG-GGTSCCCCSTTC
T ss_pred             CCCCCCCC---cCeEC--CccccccCChHHHHHHHH-HhCCCCCCCCCC
Confidence            56677776   56999  679999999999999987 899999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=7.2e-10  Score=67.55  Aligned_cols=35  Identities=34%  Similarity=0.534  Sum_probs=24.5

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCC
T ss_pred             CCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCC
Confidence            44777777777777777777777777777777743

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4.6e-10  Score=68.46  Aligned_cols=44  Identities=23%  Similarity=0.326  Sum_probs=37.5

Q ss_pred             HHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          240 RHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       240 ~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      .|+++|.++   ++|.|  +.|++.|.+.+.|..|++ .|+++++|+|++
T Consensus         2 ~H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eoo_A            2 SSGSSGSGE---RPYGC--NECGKNFGRHSHLIEHLK-RHFREKSSGPSS   45 (46)
T ss_dssp             CCCCCCSCC---CCEEC--SSSCCEESSHHHHHHHHH-HHHSTTSSCCSC
T ss_pred             CCCCCCCCC---CCEEc--cccCcccCCHHHHHHHHH-HHcCCCCCCCCC
Confidence            366777776   57999  679999999999999998 899999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=6.4e-10  Score=67.79  Aligned_cols=44  Identities=18%  Similarity=0.158  Sum_probs=38.2

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ .|++++||+|.+  |
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~--C   46 (46)
T 2yso_A            3 SGSSGSRE---KSHQC--RECGEIFFQYVSLIEHQV-LHMGQKNSGPSS--G   46 (46)
T ss_dssp             CSCCSSCC---CCEEC--TTTCCEESSHHHHHHHHH-HHSCCSCCCTTC--C
T ss_pred             cccccCCC---CCEEc--cccChhhCCHHHHHHHHH-HhCCCCCCCCCC--C
Confidence            56677776   57999  779999999999999998 899999999988  7

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.86  E-value=4.9e-10  Score=68.33  Aligned_cols=35  Identities=34%  Similarity=0.515  Sum_probs=24.4

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|++|++.|.+...|.+|+++|++++||.|..
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44777777777777777777777777777777743

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.1e-10  Score=68.25  Aligned_cols=43  Identities=23%  Similarity=0.302  Sum_probs=36.1

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++
T Consensus         3 h~~~h~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2elz_A            3 SGSSGSVE---KPYKC--EDCGKGYNRRLNLDMHQR-VHMGEKTSGPSS   45 (46)
T ss_dssp             CCSCCCCC---SSCBC--SSSCCBCSSHHHHHHHGG-GGGSCCCCCSCC
T ss_pred             CCCCCCCC---CCeeC--cccCchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            56677776   56999  779999999999999987 899999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.9e-10  Score=68.80  Aligned_cols=43  Identities=30%  Similarity=0.387  Sum_probs=36.8

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2yu8_A            3 SGSSGTGE---KPYKC--NECGKVFTQNSHLARHRR-VHTGGKPSGPSS   45 (46)
T ss_dssp             CCCCCCCC---SSEEC--SSSCCEESSSHHHHHHTH-HHHSCCCSCSCC
T ss_pred             cCcCCCCC---CCeEC--CcCCchhCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            56677776   67999  779999999999999987 899999999987

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=1.7e-09  Score=66.51  Aligned_cols=46  Identities=17%  Similarity=0.254  Sum_probs=40.7

Q ss_pred             CCCCCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccccccc
Q 048459           15 ERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGA   74 (362)
Q Consensus        15 ~~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~   74 (362)
                      ..+.+.++++|.|.+|++.|.....|..|+++|+++              ++|.|++|++
T Consensus         3 ~~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--------------k~~~C~~C~k   48 (48)
T 2epr_A            3 SGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGE--------------KPYSSGPSSG   48 (48)
T ss_dssp             CCSCCCCCCSEEETTTTEEESSHHHHHHHGGGSCSC--------------CCCCSCCCCC
T ss_pred             CCCCCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCC--------------CCccCCCCCC
Confidence            345677899999999999999999999999999886              4499999986

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.6e-10  Score=68.05  Aligned_cols=35  Identities=31%  Similarity=0.413  Sum_probs=24.1

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|++|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS   45 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCC
T ss_pred             CCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            44777777777777777777777777777777743

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.3e-10  Score=67.83  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCC
T ss_pred             cCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCC
Confidence            45778888888888888888887787777887754

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.9e-10  Score=67.64  Aligned_cols=43  Identities=28%  Similarity=0.371  Sum_probs=36.6

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2ep3_A            3 SGSSGTGE---KPYRC--AECGKAFTDRSNLFTHQK-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSCC---CSEEC--SSSCCEESSHHHHHHHHT-TTTTSCCCCTTC
T ss_pred             CCCCCCCC---CCeEC--CCCCchhCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            66777776   56999  679999999999999987 899999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.1e-10  Score=68.28  Aligned_cols=44  Identities=25%  Similarity=0.330  Sum_probs=37.9

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++  |
T Consensus         3 h~~~h~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C   46 (46)
T 2ytm_A            3 SGSSGTGE---KPYKC--MECGKAFGDNSSCTQHQR-LHTGQRPSGPSS--G   46 (46)
T ss_dssp             SCCCCSSC---CSSSB--TTTTBCCSSHHHHHHHHH-HHHSCCCCCCCC--C
T ss_pred             CCcCCCCC---CCcCC--CCCCchhCCHHHHHHHHH-HcCCCCCCCCCC--C
Confidence            56677776   57999  779999999999999998 899999999988  7

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=8.9e-10  Score=67.14  Aligned_cols=35  Identities=31%  Similarity=0.503  Sum_probs=25.7

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|++|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS   45 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCC
T ss_pred             CCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44777777777777777777777777777777743

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.85  E-value=9e-10  Score=67.12  Aligned_cols=43  Identities=28%  Similarity=0.308  Sum_probs=36.8

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|.+
T Consensus         3 h~~~h~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2el6_A            3 SGSSGAGV---NPYKC--SQCEKSFSGKLRLLVHQR-MHTREKPSGPSS   45 (46)
T ss_dssp             SCCSSCCC---CSEEC--SSSSCEESSHHHHHHHHG-GGCCSSCCSCCC
T ss_pred             CCCCCCCC---CCeEC--CCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            45667776   56999  779999999999999987 899999999988

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=7.2e-10  Score=67.54  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=24.7

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|++|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS   45 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCC
T ss_pred             CCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44777777777777777777777777777777744

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=4.4e-10  Score=68.52  Aligned_cols=43  Identities=28%  Similarity=0.369  Sum_probs=35.1

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytg_A            3 SGSSGTGE---KPFKC--GECGKSYNQRVHLTQHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSC---CSEEC--TTTCCEESSSHHHHTTGG-GGSSCCSSCSCC
T ss_pred             CCCCCCCC---CCeEC--CCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            56667765   56888  669999998889999987 888888888887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.83  E-value=7.5e-10  Score=67.48  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=25.8

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCC
Confidence            44777777777777777777777777777777744

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=9.4e-10  Score=67.03  Aligned_cols=36  Identities=36%  Similarity=0.564  Sum_probs=27.4

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      +++|.|++|++.|.+...|.+|+++|++++||.|.+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytq_A           10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS   45 (46)
T ss_dssp             CCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCC
T ss_pred             CCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCC
Confidence            355788888888888888888888888878888744

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=8.6e-10  Score=67.21  Aligned_cols=35  Identities=31%  Similarity=0.416  Sum_probs=26.7

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|++|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCC
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCC
Confidence            45778888888888888888877777777777744

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=9.2e-10  Score=67.40  Aligned_cols=44  Identities=23%  Similarity=0.287  Sum_probs=36.0

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++.+|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A            3 SGSSGTGK---KPYEC--IECGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CCCCCCCC---CSBCC--SSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             cccccCCC---CCEEC--CccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            56677776   56889  6699999999999999865788889999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=9.1e-10  Score=67.09  Aligned_cols=35  Identities=34%  Similarity=0.427  Sum_probs=25.9

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCC
T ss_pred             CCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44777777777777777777777777777777743

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=7.7e-10  Score=67.44  Aligned_cols=44  Identities=20%  Similarity=0.194  Sum_probs=37.7

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC  292 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C  292 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|+++++|+|++  |
T Consensus         3 h~~~h~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C   46 (46)
T 2em8_A            3 SGSSGSGE---KPYKC--VECGKGYKRRLDLDFHQR-VHTGEKLSGPSS--G   46 (46)
T ss_dssp             CCCCCCSC---CSEEC--SSSCCEESSHHHHHHHHH-HHHCCCCCCSCC--C
T ss_pred             CCCCCCCC---CCeEC--cccCchhCCHHHHHHHHH-HHcCCCCCCCCC--C
Confidence            45667766   57999  779999999999999998 899999999988  7

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=9.5e-10  Score=66.99  Aligned_cols=35  Identities=31%  Similarity=0.517  Sum_probs=26.7

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|++|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCC
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            45778888888888888888877777777777744

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.1e-09  Score=66.68  Aligned_cols=42  Identities=21%  Similarity=0.301  Sum_probs=25.9

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|+++++|.|.+  |++.|.....|..|+++|.+ +||.|++
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytj_A            3 SGSSGTGEKPYICAE--CGKAFTIRSNLIKHQKIHTKQKPSGPSS   45 (46)
T ss_dssp             SSCTTSSCCSEECSS--SCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred             cccCCCCCcCeECCC--CChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            555566666666643  66666666666666666665 5666654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.1e-09  Score=66.78  Aligned_cols=43  Identities=28%  Similarity=0.424  Sum_probs=37.3

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em2_A            3 SGSSGSGE---KPFKC--KECGKAFRQNIHLASHLR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCC---CSEEC--SSSCCEESSHHHHHHHHH-HHCCCCSSCSSC
T ss_pred             CCCCCCCC---CCEEC--CcCCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677776   57999  779999999999999998 899999999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.82  E-value=3.7e-09  Score=63.98  Aligned_cols=44  Identities=23%  Similarity=0.403  Sum_probs=39.4

Q ss_pred             CCCCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccc
Q 048459           16 RPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECG   73 (362)
Q Consensus        16 ~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~   73 (362)
                      ...+.++++|.|.+|++.|...+.|..|+++|+++.              +|.|+.|+
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~--------------~~~C~~cg   45 (45)
T 2epq_A            2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV--------------GKSGPSSG   45 (45)
T ss_dssp             CCCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCC--------------CCCCCCCC
T ss_pred             CCCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCC--------------CCCCcCCC
Confidence            356788999999999999999999999999998864              49999996

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=7.5e-10  Score=67.49  Aligned_cols=35  Identities=34%  Similarity=0.602  Sum_probs=23.9

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCC
T ss_pred             CCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCC
Confidence            44777777777777777777777777777777743

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=9.7e-10  Score=66.98  Aligned_cols=36  Identities=31%  Similarity=0.394  Sum_probs=27.1

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      .++|.|++|++.|.+...|.+|+++|++++||.|.+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytm_A           10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS   45 (46)
T ss_dssp             CCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            355778888888888888888887777777777754

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7.7e-10  Score=67.42  Aligned_cols=35  Identities=34%  Similarity=0.577  Sum_probs=24.2

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS   45 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44777777777777777777777777777777743

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1e-09  Score=66.87  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=27.8

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      +++|.|+.|++.|.+...|.+|+++|++++||.|.+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2elz_A           10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS   45 (46)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCC
T ss_pred             CCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            355888888888888888888888888888888844

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1e-09  Score=66.89  Aligned_cols=35  Identities=31%  Similarity=0.425  Sum_probs=22.7

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|++|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCC
T ss_pred             CCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            34666666666666666666666666666666643

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.81  E-value=7.3e-10  Score=67.53  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=23.8

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS   45 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTT
T ss_pred             CceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            44677777777777777777777777777777643

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.4e-09  Score=65.55  Aligned_cols=40  Identities=28%  Similarity=0.378  Sum_probs=19.6

Q ss_pred             HHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           86 MLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        86 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      +++|++++||.|..  |++.|.....|..|+++|.+ ++|.|.
T Consensus         2 ~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (44)
T 2emx_A            2 SSGSSGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKPSGPS   42 (44)
T ss_dssp             CCCCSSCCCEECSS--SSCEESSHHHHHHHHHHHTSSCSCSCC
T ss_pred             CCCcCCCcCccCCC--CCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            33444555555533  55555555555555555544 445554

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.6e-09  Score=65.92  Aligned_cols=42  Identities=31%  Similarity=0.398  Sum_probs=24.9

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|+++++|.|..  |++.|.....|..|+++|.+ +||.|++
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emm_A            3 SGSSGTGERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSEECSS--SCCEESSHHHHHHHHHHHSCCCTTSSSC
T ss_pred             CcCCcCCCCCeeCCC--CChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            455566666666633  66666666666666666655 5666654

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=8.4e-10  Score=67.26  Aligned_cols=35  Identities=34%  Similarity=0.464  Sum_probs=24.4

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|++|++.|.+...|.+|+++|++++||.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS   45 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTC
T ss_pred             cCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            44777777777777777777777777777777743

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=9.9e-10  Score=66.94  Aligned_cols=42  Identities=29%  Similarity=0.430  Sum_probs=21.2

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|+++++|.|.+  |++.|.....|..|+++|.+ +||.|..
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eml_A            3 SGSSGTGEKPYECSV--CGKAFSHRQSLSVHQRIHSGKKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSS--SCCEESSHHHHHHHHGGGSSCCCSCSSC
T ss_pred             ccCCcCCCCCeeCCC--cCCccCCHHHHHHHHHHhcCCCCCCCCC
Confidence            444455555555533  55555555555555555544 4555543

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=9.3e-10  Score=67.05  Aligned_cols=42  Identities=29%  Similarity=0.439  Sum_probs=24.1

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|+++++|.|.+  |++.|.....|..|+++|.+ +||.|++
T Consensus         3 H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emh_A            3 SGSSGTGERPYICTV--CGKAFTDRSNLIKHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSCCCSEECTT--TCCEESSHHHHHHHHHHHHCSSCSSSCC
T ss_pred             CCCCCCCCCCcCCCC--CCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            445555556666633  66666666666666665555 5555554

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.80  E-value=1.6e-09  Score=65.96  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=16.4

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      .++|.|++|++.|.+...|.+|+++|++++||.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ely_A           10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP   43 (46)
T ss_dssp             CCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSC
T ss_pred             CCCcccCccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            3444444444444444444444444444444444

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=9.8e-10  Score=66.95  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=23.0

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|+++++|.|.+  |++.|.....|..|+++|.+ +||.|++
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emp_A            3 SGSSGTGVKPYMCNE--CGKAFSVYSSLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCSSCCCSEECSS--SCCEESCHHHHHHHHHHHHCCSCCSCCC
T ss_pred             cccccCCCcCeECCC--CCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            444555555555533  55555555555555555554 5555544

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.80  E-value=1.3e-09  Score=66.35  Aligned_cols=43  Identities=28%  Similarity=0.379  Sum_probs=36.9

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGE---KPFEC--AECGKSFSISSQLATHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCC---CSEEC--SSSSCEESSHHHHHHHHH-HHTTSCSSSSCC
T ss_pred             CCCCCCCC---CCEEC--CCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56777776   57999  779999999999999998 899999999975

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.80  E-value=9.5e-10  Score=67.02  Aligned_cols=42  Identities=24%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|+++++|.|..  |++.|.....|..|+++|.+ +||.|++
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ema_A            3 SGSSGTGEKRYKCNE--CGKVFSRNSQLSQHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             SCSSCTTSCCEECSS--SCCEESSHHHHHHHHTGGGCCCCCSSSC
T ss_pred             CccCCCCCcCcCCCC--CcchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            444455555555533  55555555555555555544 4555543

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.79  E-value=1.5e-09  Score=64.67  Aligned_cols=42  Identities=14%  Similarity=0.239  Sum_probs=33.3

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS  288 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  288 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|+++++|.|+
T Consensus         1 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGE---NPYEC--SECGKAFNRKDQLISHQR-THAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSC---CSEEC--SSSCCEESSHHHHHHHHG-GGCCCCSCCCC
T ss_pred             CCCCCCCC---CCccC--CCcChhhCCHHHHHHHHH-hcCCCCCCCCC
Confidence            45566665   56888  669999988888988887 88888888884

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.7e-09  Score=65.88  Aligned_cols=42  Identities=29%  Similarity=0.443  Sum_probs=23.9

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|+++++|.|..  |++.|.....|..|+++|.+ +||.|++
T Consensus         3 H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNE--CGKVFTQNSHLTNHWRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSCSEECSS--SCCEESSHHHHHHHHHHHSSSSCSSCCC
T ss_pred             CcccCCCCCCEeCCc--CCCccCCHHHHHHHHHHHCCCCCCCCCC
Confidence            445555555666633  66666666666666665555 5555554

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.8e-09  Score=65.80  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=22.8

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|++++||.|.+  |++.|.....|..|+++|.+ +||.|++
T Consensus         3 H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emy_A            3 SGSSGTGENPYECHE--CGKAFSRKYQLISHQRTHAGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCEECSS--SCCEESSHHHHHHHHHHHTTSCCSCSSC
T ss_pred             CCCCCCCCcCcCCCC--CCcccCcHHHHHHHHHHcCCCCCCCCCC
Confidence            444555555555533  55555555555555555555 5555543

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.6e-09  Score=66.03  Aligned_cols=43  Identities=26%  Similarity=0.287  Sum_probs=37.1

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQ---RPYEC--IECGKAFKTKSSLICHRR-SHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCS---SSEEC--SSSCCEESSHHHHHHHHH-HHSSSSCCCCCC
T ss_pred             CccccCCC---cCcCC--CCCCCccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            66778776   57999  779999999999999998 899999999975

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1e-09  Score=66.86  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=23.6

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|..
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS   45 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSC
T ss_pred             CCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            44677777777777777777777777767776643

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2e-09  Score=65.53  Aligned_cols=42  Identities=29%  Similarity=0.465  Sum_probs=22.5

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|++++||.|.+  |++.|.....|..|+++|.+ +||.|++
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSE--CGKAFHRHTHLNEHRRIHTGYRPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCSEECSS--SCCEESSHHHHHHHHHHHTCCCSSCSSC
T ss_pred             CccccCCCcCeECCC--CCCeeCChHHHHHHHHHcCCCCCCCCCC
Confidence            444555555555533  55555555555555555554 5555543

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.78  E-value=8e-10  Score=69.97  Aligned_cols=45  Identities=27%  Similarity=0.372  Sum_probs=21.9

Q ss_pred             ccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC
Q 048459           75 SFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus        75 ~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  121 (362)
                      .|.....|..|+++|+++++|.|..  |++.|.....|..|+++|++
T Consensus         5 ~~~~~~~l~~h~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~   49 (54)
T 1yui_A            5 RAKHPPGTEKPRSRSQSEQPATCPI--CYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             CCSCSSCCCCCHHHHTSSCCEECTT--TCCEESSHHHHHHHHHHHTT
T ss_pred             ccCCCcchhhHHHhcCCCCCccCCC--CCcccCCHHHHHHHHHHhcc
Confidence            3444444444555555555555533  55555555555555555444

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.4e-09  Score=66.30  Aligned_cols=41  Identities=27%  Similarity=0.351  Sum_probs=19.4

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|++++||.|..  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emf_A            3 SGSSGTGGKHFECTE--CGKAFTRKSTLSMHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSSSSCCEECSS--SCCEESCHHHHHHHGGGTSCSSCSCCC
T ss_pred             cccccCCCCCeECCC--CCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            334444444455533  55555555555555444444 444444

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.7e-09  Score=64.34  Aligned_cols=42  Identities=24%  Similarity=0.318  Sum_probs=33.5

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS  288 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  288 (362)
                      |+++|.++   ++|.|  +.|++.|.+.+.|..|++ +|+++++|+|+
T Consensus         1 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGE---KPYSC--AECKETFSDNNRLVQHQK-MHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSC---CSCBC--TTTCCBCSSHHHHHHHHH-HTSCCSSCCCC
T ss_pred             CCcCcCCC---CCeEC--CCCCCccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            45567665   56888  669999999999999987 88888888874

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.1e-09  Score=65.43  Aligned_cols=42  Identities=31%  Similarity=0.454  Sum_probs=21.6

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|+++++|.|.+  |++.|.....|..|+++|.+ +||.|++
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep2_A            3 SGSSGTGEKPYECSI--CGKSFTKKSQLHVHQQIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSCSSCCCSEECSS--SCCEESSHHHHHHHHHTTSSCCSCCSCC
T ss_pred             CCCCCCCCcCcCCCC--CCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            444455555555533  55555555555555555554 4555543

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=1.1e-09  Score=66.76  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=20.5

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|+++++|.|.+  |++.|.....|..|+++|.+ +||.|++
T Consensus         3 H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em5_A            3 SGSSGSSTKSHQCHE--CGRGFTLKSHLNQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCSEECSS--SCCEESSHHHHHHHHTTTSCSCCSSCCC
T ss_pred             CcCCCCCCCCeECCc--CCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            344444555555533  55555555555555555444 4455543

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.6e-09  Score=65.96  Aligned_cols=43  Identities=28%  Similarity=0.359  Sum_probs=35.7

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ +|++++||.|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGE---KPYKC--NECGKVFTQNSHLVRHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCC---CSCBC--SSSCCBCSSHHHHHHHHT-TTTTSSCCCCSC
T ss_pred             CCcCCCCC---cCeEC--CCCCcccCCHHHHHHHHH-hhCCCCCCCCCC
Confidence            56677765   56999  669999999999999987 899999999875

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.3e-09  Score=65.28  Aligned_cols=42  Identities=24%  Similarity=0.275  Sum_probs=23.5

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|+++++|.|..  |++.|.....|..|+++|.+ ++|.|++
T Consensus         3 H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epw_A            3 SGSSGTGEKPCKCTE--CGKAFCWKSQLIMHQRTHVDDKHSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSS--SCCEESSSHHHHHHHHHCCSCCCSCCCC
T ss_pred             CcccCCCCCCeeCCC--CCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            445555555566633  66666555556556555555 5555544

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.6e-09  Score=66.00  Aligned_cols=43  Identities=23%  Similarity=0.316  Sum_probs=36.1

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGE---NPFIC--SECGKVFTHKTNLIIHQK-IHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSC---CSCBC--TTTCCBCSSHHHHHHHHT-TTSCCCCSCSCC
T ss_pred             CCCCCCCC---CCEEC--CccCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677766   56999  679999999999999987 899999999875

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.7e-09  Score=65.80  Aligned_cols=43  Identities=26%  Similarity=0.307  Sum_probs=36.5

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGE---KPYKC--NECGKAFRARSSLAIHQA-THSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCC---CCEEC--TTSCCEESSHHHHHHHHH-HHCCCSCSCTTC
T ss_pred             ccCCCCCC---CCeec--cccCChhcCHHHHHHHHH-HcCCCCCCCCCC
Confidence            56677776   57999  679999999999999998 899999999975

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.8e-09  Score=65.69  Aligned_cols=43  Identities=23%  Similarity=0.329  Sum_probs=36.1

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGE---KPYEC--SDCGKSFIKKSQLHVHQR-IHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSC---CSSCC--SSSCCCCSSHHHHHHHHG-GGSSSCCCSSSC
T ss_pred             cccCCCCC---CCcCC--CCCCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677776   56999  679999999999999987 899999999875

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2e-09  Score=65.48  Aligned_cols=43  Identities=28%  Similarity=0.383  Sum_probs=35.9

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||.|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGE---KPFEC--SECQKAFNTKSNLIVHQR-THTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCC---CSEEC--SSSCCEESSHHHHHHHHH-TSCSSSSSCCCC
T ss_pred             CCCCCCCC---CCcCC--CCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677765   56999  669999999999999988 899999999875

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.8e-09  Score=65.77  Aligned_cols=43  Identities=23%  Similarity=0.337  Sum_probs=36.0

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ +|++++||.|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGE---RHYEC--SECGKAFARKSTLIMHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCC---CCEEC--SSSCCEESSHHHHHHHHT-TTSCCCCCSSCC
T ss_pred             cccCcCCC---CCeEC--CcCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677776   56999  679999999999999987 899999999874

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.9e-09  Score=65.68  Aligned_cols=43  Identities=28%  Similarity=0.378  Sum_probs=36.6

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGE---KPYEC--KVCSKAFTQKAHLAQHQK-THTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSC---CSEEC--SSSCCEESSHHHHHHHHH-HHCCCCCCCSCC
T ss_pred             CCCCCCCC---cCeEC--CCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677776   56999  679999999999999998 899999999975

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.7e-09  Score=65.82  Aligned_cols=42  Identities=33%  Similarity=0.453  Sum_probs=23.7

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|++++||.|.+  |++.|.....|..|+++|.+ ++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoo_A            3 SGSSGSGERPYGCNE--CGKNFGRHSHLIEHLKRHFREKSSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCEECSS--SCCEESSHHHHHHHHHHHHSTTSSCCSC
T ss_pred             CCCCCCCCCCEEccc--cCcccCCHHHHHHHHHHHcCCCCCCCCC
Confidence            445555555566633  66666666666666555554 5555544

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.1e-09  Score=65.48  Aligned_cols=43  Identities=23%  Similarity=0.334  Sum_probs=36.0

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|+++++|+|++
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGE---RHYEC--SECGKAFIQKSTLSMHQR-IHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSC---CCEEC--SSSCCEESSHHHHHHHHG-GGCSCCCCSCCC
T ss_pred             CCcccCCC---CCCCC--CCCCcccCCHHHHHHHHh-HhCCCCCCCCCC
Confidence            56677776   56999  669999999999999987 899999999874

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=2.9e-09  Score=64.81  Aligned_cols=41  Identities=24%  Similarity=0.339  Sum_probs=19.8

Q ss_pred             HHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           86 MLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        86 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      +++|++++||.|.+  |++.|.....|..|+++|.+ +||.|.+
T Consensus         4 ~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2enc_A            4 GSSGSGEKPFKCEE--CGKGFYTNSQCYSHQRSHSGEKPSGPSS   45 (46)
T ss_dssp             SSCCCCCCSEECSS--SCCEESSHHHHHHHHHHSCCSSCCSSCC
T ss_pred             CCCCCCCCCcCCCC--CCCcCCChHHHHHHHHHhCCCCCCCCCC
Confidence            34444455555533  55555555555555555444 4455443

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.6e-09  Score=63.59  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=24.9

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      ++|.|++|++.|.+...|.+|+++|++++||.|
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            457777777777777777777777777777776

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.8e-09  Score=65.74  Aligned_cols=43  Identities=26%  Similarity=0.341  Sum_probs=35.3

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGE---KPYIC--NECGKSFIQKSHLNRHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSC---CSEEC--SSSCCEESSHHHHHHHGG-GTSSCCSSCCCC
T ss_pred             CCCCCCCC---cCEEC--CCCChhhCChHHHHHHHH-hcCCCCCcCCCC
Confidence            56677765   56899  669999999999999987 899999999875

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.76  E-value=1.8e-09  Score=64.31  Aligned_cols=33  Identities=27%  Similarity=0.433  Sum_probs=23.9

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            447777777777777777777777777777776

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.7e-09  Score=65.84  Aligned_cols=43  Identities=28%  Similarity=0.369  Sum_probs=35.4

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||.|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGE---KPYKC--NECGKVFTQNSHLARHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCC---CTTCC--SSSCCCCSSHHHHHHHHT-TTSCSCCSSTTC
T ss_pred             CCcCCCCC---cCeEC--CCCCcccCChhHHHHHhH-hcCCCCCCCCCC
Confidence            56667765   56899  669999999999999987 899999999875

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2e-09  Score=65.54  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=32.1

Q ss_pred             HHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          273 QHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       273 ~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      .|++ +|+++++|+|++  |++.|.+...|..|+++|.
T Consensus         2 ~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytg_A            2 SSGS-SGTGEKPFKCGE--CGKSYNQRVHLTQHQRVHT   36 (46)
T ss_dssp             CCCC-CCSSCCSEECTT--TCCEESSSHHHHTTGGGGS
T ss_pred             CCCC-CCCCCCCeECCC--CCcccCCHHHHHHHHHHcC
Confidence            3666 899999999999  9999999999999999876

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.1e-09  Score=65.42  Aligned_cols=43  Identities=26%  Similarity=0.417  Sum_probs=36.6

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++
T Consensus         3 h~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGK---KLFKC--NECKKTFTQSSSLTVHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSS---CCCBC--TTTCCBCSSHHHHHHHHH-HHTSSCCCSCCC
T ss_pred             CCCCCCCC---CCEEC--CccCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            56677776   56999  679999999999999998 899999999975

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.7e-09  Score=65.86  Aligned_cols=43  Identities=23%  Similarity=0.377  Sum_probs=36.6

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGE---KPYNC--EECGKAFIHDSQLQEHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCC---CSEEC--TTTCCEESSHHHHHHHHH-HHHSCCCSSSTT
T ss_pred             CCcCcCCC---cCccC--CCCCCCcCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            66777776   56999  679999999999999998 899999999975

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.8e-09  Score=65.78  Aligned_cols=43  Identities=28%  Similarity=0.374  Sum_probs=35.1

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||.|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGG---KPYQC--NECGKAFSQTSKLARHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSS---CSSSC--CSSCCCCSSHHHHHHHGG-GGCCCCCCCCCC
T ss_pred             cccccCCC---CCeEC--CCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            56677775   56888  669999999999999987 888889998875

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=2.9e-09  Score=64.77  Aligned_cols=42  Identities=21%  Similarity=0.207  Sum_probs=21.2

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|++++||.|..  |++.|.....|..|+++|.+ +||.|..
T Consensus         3 H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yso_A            3 SGSSGSREKSHQCRE--CGEIFFQYVSLIEHQVLHMGQKNSGPSS   45 (46)
T ss_dssp             CSCCSSCCCCEECTT--TCCEESSHHHHHHHHHHHSCCSCCCTTC
T ss_pred             cccccCCCCCEEccc--cChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            344455555555533  55555555555555555554 4555543

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.5e-09  Score=66.09  Aligned_cols=41  Identities=27%  Similarity=0.423  Sum_probs=21.9

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|+++++|.|..  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSSCCCSEECSS--SCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCCCeECCC--CCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            444555555555533  55555555555555555554 555554

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.6e-09  Score=65.01  Aligned_cols=42  Identities=26%  Similarity=0.383  Sum_probs=22.4

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|+++++|.|.+  |++.|.....|..|+++|.+ +||.|.+
T Consensus         3 h~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en6_A            3 SGSSGSGEKPYGCNE--CGKTFSQKSILSAHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCEEETT--TTEEESSHHHHHHHHHHHSSCCCSSSCC
T ss_pred             CCCccCCCcCeECCC--CCcccCchHHHHHHHHHcCCCCCCCCCC
Confidence            344555555555533  55555555555555555554 5555543

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.1e-09  Score=65.38  Aligned_cols=43  Identities=26%  Similarity=0.398  Sum_probs=35.7

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ .|++++||.|++
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGE---KPYRC--GECGKAFAQKANLTQHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCC---CCEEC--SSSCCEESSHHHHHHHHT-TTSSCCSSCSCC
T ss_pred             CccCCCCC---CCeEC--CCCCCccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            56677775   56999  669999999999999987 899999999875

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.1e-09  Score=65.42  Aligned_cols=43  Identities=30%  Similarity=0.356  Sum_probs=35.7

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGE---KCYKC--DVCGKEFSQSSHLQTHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCC---CCCBC--SSSCCBCSSHHHHHHHHT-TTSSSCCCCTTC
T ss_pred             CccccCCC---CCeEC--CCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            56677775   56999  679999999999999987 899999999874

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.3e-09  Score=65.29  Aligned_cols=34  Identities=35%  Similarity=0.440  Sum_probs=26.1

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4577888888888777788887777777777775

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.5e-09  Score=65.10  Aligned_cols=42  Identities=26%  Similarity=0.391  Sum_probs=24.4

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|+++++|.|..  |++.|.....|..|+++|.+ +||.|+.
T Consensus         3 H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en1_A            3 SGSSGSGEKPFKCEE--CGKRFTQNSQLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             STTCCCCCCSEEETT--TTEEESSHHHHHHHGGGGSCCCCSCCCC
T ss_pred             cccCCCCCCCeeCCC--CCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            455555666666633  66666666666666666555 5566544

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.1e-09  Score=65.48  Aligned_cols=43  Identities=28%  Similarity=0.368  Sum_probs=35.8

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGE---KPYKC--NECGKAFRAHSNLTTHQV-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCS---CCCCC--TTTTCCCSSHHHHHHHHT-TTCCSCCSSCCC
T ss_pred             cccccCCC---CCeEC--CcCChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677776   56999  669999999999999987 899999999875

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.7e-09  Score=65.85  Aligned_cols=42  Identities=29%  Similarity=0.460  Sum_probs=22.8

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCc
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPI  128 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~  128 (362)
                      |+++|++++||.|..  |++.|.....|..|+++|.+ +||.|++
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNE--CGKVFTQNSHLARHRRVHTGGKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSEECSS--SCCEESSSHHHHHHTHHHHSCCCSCSCC
T ss_pred             cCcCCCCCCCeECCc--CCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            444555555555533  55555555555555555554 5555543

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.4e-09  Score=65.17  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=36.6

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ +|+++++|+|+.
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGE---KPYSC--NVCGKAFVLSAHLNQHLR-VHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSC---CSEEE--TTTTEEESSHHHHHHHHH-HHSSCCSSSCCC
T ss_pred             ccccCCCC---CCeEC--cccChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            66777776   57999  669999999999999998 899999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.3e-09  Score=65.26  Aligned_cols=43  Identities=28%  Similarity=0.416  Sum_probs=34.8

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGE---KPFQC--EECGKRFTQNSHLHSHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCS---SSBCC--SSSCCCBSSHHHHHHHGG-GGTTCCCSSCCC
T ss_pred             cccCCCCC---cCCCC--CCCCcccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            56667765   56888  669999999999999987 888888888874

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.3e-09  Score=65.53  Aligned_cols=35  Identities=31%  Similarity=0.430  Sum_probs=25.9

Q ss_pred             ccccccccccccCChhHHHHHHH-hccCCCCeeccc
Q 048459           65 QCNTCEECGASFKKPAYLKQHML-SHLLERPFRCSV   99 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~   99 (362)
                      ++|.|+.|++.|.....|.+|++ +|++++||.|.+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             CCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            45777777777777777777777 777777777744

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.74  E-value=2.3e-09  Score=65.23  Aligned_cols=41  Identities=29%  Similarity=0.407  Sum_probs=20.2

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|++++||.|..  |++.|.....|..|+++|.+ +||.|.
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em9_A            3 SGSSGTGEKPYNCKE--CGKSFRWASCLLKHQRVHSGEKPSGPS   44 (46)
T ss_dssp             SCCSCCCCCSEECSS--SCCEESSHHHHHHHGGGGTSCCCCSTT
T ss_pred             CCCCCCCCcCeECCc--cccccCChHHHHHHHHHhCCCCCCCCC
Confidence            344445555555533  55555555555555555544 445554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.4e-09  Score=65.15  Aligned_cols=34  Identities=32%  Similarity=0.469  Sum_probs=24.8

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|+.|++.|.....|.+|+++|++++||.|.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             cCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            4477777777777777777777777777777774

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2e-09  Score=65.52  Aligned_cols=43  Identities=28%  Similarity=0.342  Sum_probs=34.7

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         3 h~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGE---KPYKC--QVCGKAFRVSSHLVQHHS-VHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSC---CSCBC--SSSCCBCSSHHHHHHHTT-TTTSCCSCTTSC
T ss_pred             CCCCCCCC---cccCC--CCCCcccCcHHHHHHHHH-hcCCCCCCCCCC
Confidence            45667665   56888  669999999999999987 888888998874

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2.2e-09  Score=65.33  Aligned_cols=34  Identities=29%  Similarity=0.452  Sum_probs=17.1

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      .++|.|++|++.|.+...|.+|+++|++++||.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ysp_A           10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP   43 (46)
T ss_dssp             CCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCC
Confidence            3445555555555555555555555555555554

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=3.1e-09  Score=64.69  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=24.0

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4477777777777777777777777777777764

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=3.3e-09  Score=63.85  Aligned_cols=42  Identities=19%  Similarity=0.275  Sum_probs=34.0

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS  288 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  288 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ .|+++++|+|+
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGE---NPFKC--SKCDRVFTQRNYLVQHER-THARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCC---CSEEC--SSSSCEESSSHHHHHHHH-HCCCCCSSCCC
T ss_pred             CccccCCC---CCeEC--CCCCchhCCHHHHHHHhH-hcCCCCCCCCC
Confidence            56677766   56888  669999998899999987 88888888884

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2.5e-09  Score=65.06  Aligned_cols=34  Identities=32%  Similarity=0.482  Sum_probs=25.5

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             cCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            4577777777777777777777777777777774

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=3.1e-09  Score=63.94  Aligned_cols=42  Identities=21%  Similarity=0.323  Sum_probs=33.9

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS  288 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  288 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|+
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGE---KPYEC--NECQKAFNTKSNLMVHQR-THTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCC---CSEEC--TTTCCEESCHHHHHHHHH-HTTTSSCSCCC
T ss_pred             CccCCCCC---CCeEC--CCCCcccCCHhHHHHHHH-HhCCCCCCCCC
Confidence            56677765   56888  669999999999999987 88888888884

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=6.2e-09  Score=63.97  Aligned_cols=38  Identities=21%  Similarity=0.343  Sum_probs=35.4

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGM  294 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~  294 (362)
                      ++|.|  +.|++.|.+...|..|++ +|++++||+|.+  |+|
T Consensus        11 k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~--C~k   48 (48)
T 2epr_A           11 KQVAC--EICGKIFRDVYHLNRHKL-SHSGEKPYSSGP--SSG   48 (48)
T ss_dssp             CSEEE--TTTTEEESSHHHHHHHGG-GSCSCCCCCSCC--CCC
T ss_pred             cCeeC--CCCCcccCCHHHHHHHHH-hcCCCCCccCCC--CCC
Confidence            67999  779999999999999998 999999999999  986

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=3e-09  Score=64.76  Aligned_cols=42  Identities=24%  Similarity=0.359  Sum_probs=35.4

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS  288 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  288 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|+++++|+|+
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGK---KPYEC--KECRKTFIQIGHLNQHKR-VHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCS---CSCCC--SSSCCCCSSHHHHHHHHH-HCSSCCSCSTT
T ss_pred             CCCCcCCC---CCcCC--CCcCchhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            56677776   56999  679999999999999988 89999999986

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=3.2e-09  Score=64.59  Aligned_cols=34  Identities=35%  Similarity=0.484  Sum_probs=25.3

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4477777777777777777777777777777774

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2.6e-09  Score=64.33  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=34.0

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS  288 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  288 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|+++++|+|+
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGE---NPYEC--CECGKVFSRKDQLVSHQK-THSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSC---CSCEE--TTTTEECSSHHHHHHHHT-TSSSSCSCCCC
T ss_pred             CccccCCC---cCeeC--CCCCCccCCHHHHHHHHH-HcCCCCCCCCC
Confidence            56677776   56888  669999988888988987 88888888884

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=3.1e-09  Score=64.69  Aligned_cols=34  Identities=32%  Similarity=0.549  Sum_probs=25.9

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4577777777777777777777777777777774

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=3.1e-09  Score=64.65  Aligned_cols=34  Identities=32%  Similarity=0.653  Sum_probs=25.1

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4477777777777777777777777777777774

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=3.2e-09  Score=64.61  Aligned_cols=43  Identities=21%  Similarity=0.261  Sum_probs=36.0

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ .|+++++|+|+.
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yto_A            3 SGSSGTGE---KPYKC--SDCGKAFTRKSGLHIHQQ-SHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCSC---CCEEC--SSSCCEESSHHHHHHHHH-HHTCCCBTTTBC
T ss_pred             cccccCCC---CCEEC--cccCCccCCHhHHHHHHH-HcCCCCCCCCCC
Confidence            56677775   56999  679999999999999988 899999999873

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=4.5e-09  Score=63.94  Aligned_cols=41  Identities=34%  Similarity=0.518  Sum_probs=21.1

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|+++++|.|..  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            3 SGSSGSGEKPFKCKE--CGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCSEECSS--SCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCCEECCc--CCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455555555533  55555555555555555554 455554

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.4e-09  Score=65.18  Aligned_cols=34  Identities=32%  Similarity=0.511  Sum_probs=22.5

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4466666666666666666666666666666664

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=4e-09  Score=64.15  Aligned_cols=34  Identities=32%  Similarity=0.394  Sum_probs=25.3

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|++|++.|.....|.+|+++|++++||.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4577777777777777777777777777777774

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.6e-09  Score=65.00  Aligned_cols=34  Identities=35%  Similarity=0.509  Sum_probs=25.8

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|++|++.|.+...|.+|+++|++++||.|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             cccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            4577777777777777777777777777777774

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=3e-09  Score=64.00  Aligned_cols=42  Identities=17%  Similarity=0.207  Sum_probs=33.2

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS  288 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  288 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|+
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGM---KPYVC--NECGKAFRSKSYLIIHTR-THTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSS---SSSCC--TTTCCCCSSHHHHHHHHT-TTCCSSSSCCC
T ss_pred             CCcCCCCC---cCeEC--CCCCCccCCHHHHHHHhh-hcCCCCCCCCC
Confidence            55667665   56888  668888888888888887 88888888874

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.71  E-value=4e-09  Score=64.15  Aligned_cols=35  Identities=31%  Similarity=0.438  Sum_probs=19.2

Q ss_pred             CCccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           63 GVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      ++++|.|++|++.|.+...|.+|+++|++++||.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2el6_A            9 GVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP   43 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            34455555555555555555555555555555555

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=3.5e-09  Score=64.43  Aligned_cols=43  Identities=26%  Similarity=0.379  Sum_probs=34.3

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCC-CcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYE-IKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~-~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ +|++ ++||+|++
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKE---KCFKC--NKCEKTFSCSKYLTQHER-IHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCS---CCEEC--SSSCCEESSSHHHHHHHT-TCCSCCTTSSSCC
T ss_pred             CccccCCC---CCEEC--cCCCCcCCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            55667665   56888  669999998889999987 8888 88888863

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=3.3e-09  Score=64.55  Aligned_cols=34  Identities=32%  Similarity=0.573  Sum_probs=25.2

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4477777777777777777777777777777774

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.3e-08  Score=61.86  Aligned_cols=43  Identities=19%  Similarity=0.196  Sum_probs=38.2

Q ss_pred             CCCCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccccc
Q 048459           16 RPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEEC   72 (362)
Q Consensus        16 ~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C   72 (362)
                      ...+.++++|.|.+|++.|...+.|..|++.|+++.              +|.|++|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--------------~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEK--------------PSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSC--------------CCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCC--------------CCCCCCC
Confidence            456778999999999999999999999999998864              4999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.1e-08  Score=62.21  Aligned_cols=43  Identities=19%  Similarity=0.287  Sum_probs=38.2

Q ss_pred             CCCCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccccc
Q 048459           16 RPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEEC   72 (362)
Q Consensus        16 ~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C   72 (362)
                      ...+.++++|.|.+|++.|...+.|..|++.|+++.              +|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--------------~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREK--------------PSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCC--------------CCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCC--------------CCCCCCC
Confidence            345778999999999999999999999999999864              4999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=3.5e-09  Score=64.41  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=18.4

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      .++|.|++|++.|.+...|.+|+++|++++||.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em8_A           10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP   43 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCS
T ss_pred             CCCeECcccCchhCCHHHHHHHHHHHcCCCCCCC
Confidence            4445555555555555555555555555555555

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=3.5e-09  Score=64.41  Aligned_cols=34  Identities=35%  Similarity=0.532  Sum_probs=25.2

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            4477777777777777777777777777777774

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4e-09  Score=64.16  Aligned_cols=41  Identities=29%  Similarity=0.394  Sum_probs=34.6

Q ss_pred             HhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          243 RTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       243 ~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      ++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|.+
T Consensus         5 ~~h~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep0_A            5 SSGTGE---KPYKC--DVCHKSFRYGSSLTVHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CSSTTC---CSEEC--SSSCCEESSHHHHHHHHT-TTSSSCCCSCCC
T ss_pred             CCCCCC---CCeeC--cccCcccCChHHHHHHHH-HhCCCCCCCCCC
Confidence            456665   57999  779999999999999987 899999999987

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.70  E-value=2.8e-09  Score=67.37  Aligned_cols=45  Identities=22%  Similarity=0.374  Sum_probs=32.7

Q ss_pred             cccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHHhc
Q 048459          103 HASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELH  149 (362)
Q Consensus       103 ~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h  149 (362)
                      ++.|.....|..|++.|.+ ++|.|..  |++.|.....|..|++.+.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~   48 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPI--CYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTT--TCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCC--CCcccCCHHHHHHHHHHhc
Confidence            3566777777777777777 7778866  8888887778888877443

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=3.7e-09  Score=63.58  Aligned_cols=33  Identities=30%  Similarity=0.534  Sum_probs=25.8

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      ++|.|++|++.|.+...|.+|+++|++++||.|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             cCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            457788888888888888888877877777777

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.70  E-value=4.9e-09  Score=63.77  Aligned_cols=41  Identities=29%  Similarity=0.396  Sum_probs=24.2

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|.++++|.|..  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAE--CGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSS--SSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCEECCC--CCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445556666666633  66666666666666666655 556554

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=5.1e-09  Score=63.70  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=22.5

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|+++++|.|..  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIE--CGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSS--SCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCC--CCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            444555555555533  55555555555555555555 555554

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.69  E-value=4.5e-09  Score=62.51  Aligned_cols=41  Identities=17%  Similarity=0.243  Sum_probs=32.4

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCccccc
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFAC  287 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  287 (362)
                      |+++|.++   ++|.|  +.|++.|.+.+.|..|++ .|++++||+|
T Consensus         2 H~~~H~~~---~~~~C--~~C~k~f~~~~~l~~H~~-~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGE---TPYLC--GQCGKSFTQRGSLAVHQR-SCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSS---CCEEC--SSSCCEESSHHHHHHHHH-HTTCCCCCCC
T ss_pred             CCccCCCC---CCeEC--CCCCcccCCHHHHHHHhh-hcCCCCCCCC
Confidence            44566665   56888  668888888888888887 8888888887

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=3.7e-09  Score=63.63  Aligned_cols=42  Identities=24%  Similarity=0.377  Sum_probs=33.3

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS  288 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  288 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ +|++++||+|+
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTR---KRYEC--SKCQATFNLRKHLIQHQK-THAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCC---SSEEC--TTTCCEESCHHHHHHHGG-GGCCCCCTTCC
T ss_pred             cccccCCC---CCeEC--CCCCCccCCHHHHHHHHH-HcCCCCCcCCC
Confidence            56667665   56888  668888888888888887 88888888874

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=5.3e-09  Score=63.57  Aligned_cols=41  Identities=27%  Similarity=0.463  Sum_probs=24.2

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|+++++|.|..  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNE--CGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTT--SCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             ccCCCCCCCCeeccc--cCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            445555666666643  66666666666666666655 556654

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=5.5e-09  Score=63.54  Aligned_cols=41  Identities=32%  Similarity=0.538  Sum_probs=23.7

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|+++++|.|.+  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            3 SGSSGTGEKPYECKV--CSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSS--SCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCcCeECCC--CCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445555556666633  66666666666666666555 555554

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=4e-09  Score=64.15  Aligned_cols=43  Identities=26%  Similarity=0.350  Sum_probs=35.7

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ .|++++||+|+.
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGE---KPYEC--NQCGKAFSVRSSLTTHQA-IHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCC---CSSEE--TTTTEECSSHHHHHHHHT-TSCCCCCCCSCC
T ss_pred             cccCCCCC---CCeEC--CCCChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677775   56999  669999999999999987 899999999874

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=3.5e-09  Score=63.72  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=23.0

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      ++|.|++|++.|.+...|.+|+++|+++++|.|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            447777777777777777777777777777766

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=3.4e-09  Score=63.06  Aligned_cols=41  Identities=17%  Similarity=0.335  Sum_probs=29.4

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCccccc
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFAC  287 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  287 (362)
                      |+++|.++   ++|.|  +.|++.|.+.+.|..|++ .|++++||+|
T Consensus         2 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGE---KPYPC--EICGTRFRHLQTLKSHLR-IHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSS---CCBCC--SSSCCCBSSHHHHHHHTT-TTSCCSSTTC
T ss_pred             CCcccCCC---CCEEC--CCCCCccCCHHHHHHHHH-hcCCCCCCCC
Confidence            34556655   46777  668888888888888876 7777777776

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=4.1e-09  Score=64.11  Aligned_cols=41  Identities=29%  Similarity=0.454  Sum_probs=26.7

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|+++++|.|.+  |++.|.....|..|+++|.+ ++|.|+
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNV--CGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETT--TTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccccCCCCCCeECcc--cChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            555666666666644  66666666666666666665 666664

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=4.5e-09  Score=63.95  Aligned_cols=43  Identities=28%  Similarity=0.386  Sum_probs=34.0

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ +|++++||+|+.
T Consensus         3 h~~~h~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGE---KPYEC--DVCRKAFSHHASLTQHQR-VHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCS---SSCBC--TTTCCBCSSSHHHHHHGG-GSCCSCCCCCCC
T ss_pred             CCCCcCCC---CCcCC--CCcCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            45566665   56888  669999988889999987 888888888864

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.68  E-value=4.4e-09  Score=62.55  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=23.1

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            447777777777777777777777777777665

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.68  E-value=1.1e-08  Score=61.83  Aligned_cols=42  Identities=19%  Similarity=0.286  Sum_probs=36.3

Q ss_pred             hhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCC
Q 048459          244 THEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCG  293 (362)
Q Consensus       244 ~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~  293 (362)
                      .|.++   ++|.|  +.|++.|.....|..|++ .|+++++|.|++  ||
T Consensus         4 ~h~~~---k~~~C--~~C~k~f~~~~~l~~H~~-~H~~~~~~~C~~--cg   45 (45)
T 2epq_A            4 GSSGE---KPYSC--PVCGLRFKRKDRMSYHVR-SHDGSVGKSGPS--SG   45 (45)
T ss_dssp             CCSSC---CSSEE--TTTTEECSCHHHHHHHHH-HHSCCCCCCCCC--CC
T ss_pred             CcCCC---CCCcC--CCCCcccCCHHHHHHHHH-HccCCCCCCCcC--CC
Confidence            34554   67999  779999999999999998 899999999999  86

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=5.5e-09  Score=63.49  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=23.4

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|.++++|.|..  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEE--CGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTT--TCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCC--CCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            445555555666633  66666666666666665555 555554

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=3.5e-09  Score=63.00  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=25.4

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            557788888888877778888777777777766

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=6.2e-09  Score=63.28  Aligned_cols=41  Identities=32%  Similarity=0.458  Sum_probs=21.9

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|+++++|.|.+  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSE--CQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSS--SCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCcCCCC--CCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555533  55555555555555555554 555554

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=2.8e-09  Score=63.40  Aligned_cols=33  Identities=24%  Similarity=0.465  Sum_probs=25.1

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            457777777777777777777777777777766

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=2.9e-09  Score=64.78  Aligned_cols=43  Identities=23%  Similarity=0.335  Sum_probs=35.4

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ +|+++++|+|++
T Consensus         3 h~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGSSGSGE---RPFKC--NECGKGFGRRSHLAGHLR-LHSREKSSGPSS   45 (46)
T ss_dssp             CCSCSSCC---CSCCC--SSSCCCCSSHHHHHHHHH-HHHHTTCCCSCC
T ss_pred             CCcCCCCC---CCeEC--CCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            56677776   56899  669999999999999988 888899999874

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=8.1e-09  Score=62.06  Aligned_cols=40  Identities=25%  Similarity=0.424  Sum_probs=23.5

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC  126 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C  126 (362)
                      |+++|+++++|.|.+  |++.|.....|..|+++|.+ +||.|
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNE--CQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTT--TCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCC--CCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            445555666666643  66666666666666666655 55555

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=2.8e-09  Score=63.39  Aligned_cols=41  Identities=22%  Similarity=0.404  Sum_probs=26.9

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCccccc
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFAC  287 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  287 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|
T Consensus         2 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGE---KPYRC--DQCGKAFSQKGSLIVHIR-VHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSC---CSBCC--TTTTCCBSSHHHHHTTGG-GTSCCSCCCC
T ss_pred             CccccCCC---CCeeC--CCccchhCCHHHHHHHHH-HhCCCCCCCC
Confidence            44555554   45777  557777777777777766 6777777765

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=5.8e-09  Score=62.75  Aligned_cols=40  Identities=25%  Similarity=0.378  Sum_probs=23.7

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC  126 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C  126 (362)
                      |+++|++++||.|..  |++.|.....|..|+++|.+ ++|.|
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSK--CDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSS--SSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CccccCCCCCeECCC--CCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            455556666666633  66666666666666666655 55555

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=5.1e-09  Score=63.68  Aligned_cols=41  Identities=29%  Similarity=0.450  Sum_probs=26.1

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|++++||.|.+  |++.|.....|..|+++|.+ ++|.|+
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSD--CGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSS--SCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcc--cCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            555666666666644  66666666666666666665 666664

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=6.2e-09  Score=62.63  Aligned_cols=42  Identities=19%  Similarity=0.227  Sum_probs=34.3

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS  288 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  288 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ +|++++||+|+
T Consensus         3 h~~~h~~~---~~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAK---TTSEC--QECGKIFRHSSLLIEHQA-LHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSS---CCCCC--TTTCCCCSSHHHHHHHHH-HHTTSCCCCCC
T ss_pred             CCCCCCCC---cCeEC--CCCCcccCCHHHHHHHHH-HHCCCCCCCCC
Confidence            45566665   56899  679999999999999988 89999999884

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=3.3e-09  Score=63.09  Aligned_cols=41  Identities=24%  Similarity=0.396  Sum_probs=31.1

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCccccc
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFAC  287 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  287 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|
T Consensus         2 H~~~H~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGE---KPYKC--ETCGARFVQVAHLRAHVL-IHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSS---CSEEC--TTTCCEESSHHHHHHHTH-HHHSCCSSCC
T ss_pred             CCcccCCC---CCEeC--CCcChhhCCHHHHHHHHH-HcCCCCCCCC
Confidence            45566665   56888  668888888888888887 7888888876

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=4.3e-09  Score=64.01  Aligned_cols=34  Identities=29%  Similarity=0.461  Sum_probs=23.9

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|++|++.|.....|.+|+++|+++++|.|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4477777777777777777777777777777764

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=6.6e-09  Score=63.16  Aligned_cols=41  Identities=29%  Similarity=0.361  Sum_probs=20.0

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|+++++|.|.+  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSE--CGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSS--SCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCcccCCCCCCCCCC--CCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            344444555555533  55555555555555555544 445443

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=4e-09  Score=63.48  Aligned_cols=42  Identities=17%  Similarity=0.265  Sum_probs=33.0

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS  288 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  288 (362)
                      |+++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||.|.
T Consensus         3 H~~~H~~~---~~~~C--~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDS---KSYNC--NECGKAFTRIFHLTRHQK-IHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCC---CCEEE--TTTTEEESSSHHHHTTHH-HHCCCCCCSCC
T ss_pred             CCcCCCCC---CCeEC--cccCcccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            55667665   56888  668888888888888887 88888888874

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=4.3e-09  Score=64.01  Aligned_cols=41  Identities=32%  Similarity=0.369  Sum_probs=33.5

Q ss_pred             HhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          243 RTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       243 ~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      ++|.++   ++|.|  +.|++.|.+...|..|++ +|++++||+|++
T Consensus         5 ~~h~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytt_A            5 SSGEGE---KPYQC--SECGKSFSGSYRLTQHWI-THTREKPSGPSS   45 (46)
T ss_dssp             SSCSCC---CTTCC--SSSCCCCSSHHHHHHHHT-HHHHCCCCSCCC
T ss_pred             CCCCCC---CCeeC--CCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            445555   56889  669999999999999987 888899999987

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=5.4e-09  Score=63.54  Aligned_cols=34  Identities=26%  Similarity=0.459  Sum_probs=23.5

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      ++|.|+.|++.|.....|.+|+++|++++||.|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4477777777777777777777777777777663

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=8.1e-09  Score=62.09  Aligned_cols=34  Identities=26%  Similarity=0.459  Sum_probs=26.3

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      .++|.|++|++.|.....|.+|+++|++++||.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A           10 KTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             SCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            3557788888888888888888888877777777

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=6.6e-09  Score=63.15  Aligned_cols=41  Identities=32%  Similarity=0.477  Sum_probs=21.1

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|+++++|.|..  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGE--CGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSS--SCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCC--CCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            444455555555533  55555555555555555544 455554

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=4.3e-09  Score=64.02  Aligned_cols=42  Identities=24%  Similarity=0.415  Sum_probs=33.8

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS  288 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  288 (362)
                      |+++|.++   ++|.|  +.|++.|.....|..|++ .|+++++|+|+
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGE---KPFQC--KECGMNFSWSCSLFKHLR-SHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCC---CSEEC--SSSCCEESSSHHHHHHHH-HHHHSCCSSCS
T ss_pred             cccccCCC---CCeeC--cccChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            56667765   56888  668888888888888887 88888888886

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=6.5e-09  Score=63.18  Aligned_cols=41  Identities=34%  Similarity=0.468  Sum_probs=20.7

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|+++++|.|..  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNE--CGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSS--SCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCC--CChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            344455555555533  55555555555555555544 455554

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=3.9e-09  Score=62.81  Aligned_cols=33  Identities=36%  Similarity=0.566  Sum_probs=22.0

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      ++|.|+.|++.|.+...|.+|+++|++++||.|
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            446666666666666666666666666666665

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=6.9e-09  Score=63.09  Aligned_cols=35  Identities=31%  Similarity=0.410  Sum_probs=26.8

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      .++|.|++|++.|.....|.+|+++|++++||.|.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A           10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             SSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            35577888888888888888888788777777774

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=5.2e-09  Score=63.66  Aligned_cols=34  Identities=29%  Similarity=0.532  Sum_probs=26.2

Q ss_pred             ccccccccccccCChhHHHHHHHhccC-CCCeecc
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLL-ERPFRCS   98 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~   98 (362)
                      ++|.|+.|++.|.+...|.+|+++|++ ++||.|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            457788888888888888888877877 7777774

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=2.5e-08  Score=59.54  Aligned_cols=35  Identities=29%  Similarity=0.422  Sum_probs=27.5

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      .++|.|+.|++.|.....|.+|+++|++++||.|.
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            8 NGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            45688888888888888888888888888888774

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=9.5e-09  Score=63.04  Aligned_cols=44  Identities=25%  Similarity=0.449  Sum_probs=35.8

Q ss_pred             HHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          242 VRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       242 ~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      .++|.++   ++|.|.++.|++.|.....|..|++ +|++++||+|.+
T Consensus         4 ~~~H~~~---k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   47 (48)
T 2ent_A            4 GSSGTGE---KPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPSS   47 (48)
T ss_dssp             CCSSCCC---CCEECCSSSCCCEESSHHHHHHHHT-TSCCCCSCSSCC
T ss_pred             CCCcCCC---CCeECCCCCCCCccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            3456665   5799943379999999999999998 899999999987

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=2.2e-08  Score=59.82  Aligned_cols=40  Identities=20%  Similarity=0.215  Sum_probs=33.0

Q ss_pred             hhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          244 THEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       244 ~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      +|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|++
T Consensus         4 ~h~~~---k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGN---GAFFC--NECDCRFSEEASLKRHTL-QTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSS---CCBCC--SSSCCCBSSHHHHHHHHH-HHTCTTCSSSCC
T ss_pred             CcCCC---CCEEC--CCCCCeeCChHHHHHHHH-hhCCCCCccCCC
Confidence            45554   56999  779999999999999988 899999999874

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=3.1e-08  Score=60.07  Aligned_cols=35  Identities=29%  Similarity=0.446  Sum_probs=27.1

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      .++|.|+.|++.|.+...|.+|+++|++++||.|.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            45578888888888888888888888888888774

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.2e-08  Score=61.25  Aligned_cols=42  Identities=17%  Similarity=0.215  Sum_probs=30.7

Q ss_pred             HHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccC
Q 048459          241 HVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACS  288 (362)
Q Consensus       241 H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  288 (362)
                      |+++|.++   ++|.|  ++|++.|...+.|..|++ +|++++||.|.
T Consensus         3 H~~~H~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGE---KPYEC--NECGKAFIWKSLLIVHER-THAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCC---CSEEC--SSSCCEESSHHHHHHHHG-GGSSCSCCCCC
T ss_pred             CCcccCCC---cCeEC--CCCCcccCchHHHHHHHh-HhcCCCCCCCC
Confidence            55666665   56888  668888888888888876 78888887763

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=1.6e-08  Score=61.42  Aligned_cols=41  Identities=27%  Similarity=0.352  Sum_probs=34.4

Q ss_pred             HhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          243 RTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       243 ~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      ++|.++   ++|.|  +.|++.|.+...|..|++ .|++++||+|.+
T Consensus         5 ~~h~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eom_A            5 SSGHGE---RGHRC--SDCGKFFLQASNFIQHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCC---SSCCC--SSSCCCCSSHHHHHHHHH-HHSSCCCSSCCC
T ss_pred             CCCCCC---CCcCC--CCCCCeeCChHHHHHHHH-HhCCCCCCCCCC
Confidence            456655   57999  779999999999999998 899999999975

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=2.2e-08  Score=59.04  Aligned_cols=34  Identities=29%  Similarity=0.481  Sum_probs=26.6

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      +++|.|+.|++.|.....|..|+++|++++||.|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            8 QRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4567888888888888888888888888777776

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=1.1e-08  Score=61.42  Aligned_cols=40  Identities=23%  Similarity=0.384  Sum_probs=20.5

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC  126 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C  126 (362)
                      |+++|.++++|.|..  |++.|.....|..|+++|.+ +||.|
T Consensus         3 H~~~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSGHTRKRYECSK--CQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCSCCCCCSSEECTT--TCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccccCCCCCeECCC--CCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            444455555555533  55555555555555555554 45544

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.1e-08  Score=61.48  Aligned_cols=33  Identities=24%  Similarity=0.305  Sum_probs=22.4

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      ++|.|++|++.|.....|.+|+++|++++||.|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             cCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            446677777777777777777766766666665

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.3e-08  Score=61.47  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=33.2

Q ss_pred             HhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          243 RTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       243 ~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      ++|.++   ++|.|  +.|++.|.....|..|++ +|+++++|+|++
T Consensus         5 ~~h~~~---k~~~C--~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (45)
T 2epu_A            5 SSGTGQ---KPFEC--THCGKSFRAKGNLVTHQR-IHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCSC---CSEEE--TTTTEEESSHHHHHHHHT-TTSSCCCCCSCC
T ss_pred             CCCCCC---cCccC--CCCCCccCChHHHHHHHH-HhCCCCCCCCCC
Confidence            345554   56999  669999999999999987 899999999864

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.57  E-value=1.3e-09  Score=71.21  Aligned_cols=42  Identities=21%  Similarity=0.548  Sum_probs=24.7

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhH
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDH  111 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~  111 (362)
                      ++|.|+.|++.|.....|.   ++|.+++||.|..  |++.|....+
T Consensus        13 k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~--C~k~f~~~~~   54 (62)
T 1vd4_A           13 ASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTF--CHTEVEEDES   54 (62)
T ss_dssp             SEEECSSSCCEEEHHHHHH---HEETTTTEEBCSS--SCCBCEECTT
T ss_pred             CCccCCCCCchhccHHHhH---hhcCCCCCEECCC--CCCccccCcc
Confidence            3466666666666655554   5566666666644  6666655443

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=1e-08  Score=62.28  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=25.7

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCP  127 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~  127 (362)
                      |+++|++++||.|.+  |++.|.....|..|+++|.+ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKE--CGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSS--SCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcc--cChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455566666666644  66666666666666666655 566664

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.55  E-value=4.2e-08  Score=63.51  Aligned_cols=39  Identities=28%  Similarity=0.465  Sum_probs=32.8

Q ss_pred             CCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          251 SERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       251 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      .+||+|.++.|+++|...+.|..|++.+|++++||.|..
T Consensus        25 EKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           25 YRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             CCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            378999655699999999999999855899999998864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.4e-08  Score=61.06  Aligned_cols=40  Identities=25%  Similarity=0.309  Sum_probs=23.6

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKC  126 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C  126 (362)
                      |+++|++++||.|..  |++.|.....|..|+++|.+ +||.|
T Consensus         3 H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNE--CGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETT--TTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCCCeECcc--cCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            445556666666643  66666666666666666655 55555

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=3.8e-08  Score=58.01  Aligned_cols=33  Identities=24%  Similarity=0.441  Sum_probs=24.5

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCccccc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFAC  287 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  287 (362)
                      ++|.|  +.|++.|.....|..|++ +|++++||+|
T Consensus         9 k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~C   41 (41)
T 2ept_A            9 RVYEC--QECGKSFRQKGSLTLHER-IHTGSGPSSG   41 (41)
T ss_dssp             CCEEC--SSSCCEESSHHHHHHHGG-GCCCCSCSCC
T ss_pred             CCeEC--CCCCCCcCCHHHHHHHHH-HhCCCCCcCC
Confidence            46777  567777777777777776 7777777776

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=7.5e-08  Score=58.04  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=32.7

Q ss_pred             CCCCCCCCccccccccccccchHHHHHHHHhhccccc
Q 048459           16 RPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDE   52 (362)
Q Consensus        16 ~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   52 (362)
                      ...+.++++|.|.+|++.|.....|..|++.|+++++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKS   40 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCC
Confidence            4467789999999999999999999999999988643

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=1.1e-07  Score=54.70  Aligned_cols=34  Identities=15%  Similarity=0.229  Sum_probs=30.7

Q ss_pred             CCCCCCCcccccc--ccccccchHHHHHHHHhhccc
Q 048459           17 PKSRDVRRYYCDY--CGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        17 ~~~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ....+++||.|.+  |++.|...+.|.+|+++|++.
T Consensus         2 ~~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            2 SSGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CCSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            4567899999987  999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.47  E-value=1e-07  Score=53.18  Aligned_cols=32  Identities=28%  Similarity=0.392  Sum_probs=28.1

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCee
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFR   96 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   96 (362)
                      ++|.|++|++.|.....|..|+++|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            35889999999999999999999999988875

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.45  E-value=1.5e-07  Score=60.91  Aligned_cols=37  Identities=22%  Similarity=0.242  Sum_probs=32.4

Q ss_pred             CCCccccccc--cccccCChhHHHHHH-HhccCCCCeecc
Q 048459           62 KGVQCNTCEE--CGASFKKPAYLKQHM-LSHLLERPFRCS   98 (362)
Q Consensus        62 ~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~C~   98 (362)
                      .+++||.|+.  |++.|.....|.+|+ ++|++++||.|.
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            6789999965  999999999999997 589999999884

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.43  E-value=1.9e-07  Score=56.98  Aligned_cols=42  Identities=17%  Similarity=0.214  Sum_probs=37.1

Q ss_pred             CCCCCCCccccc--cccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccccc
Q 048459           17 PKSRDVRRYYCD--YCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEEC   72 (362)
Q Consensus        17 ~~~~~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C   72 (362)
                      ..+.++++|.|.  .|++.|...+.|..|+++|.++              ++|.|..|
T Consensus         5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~--------------k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGV--------------KPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCC--------------CSCSSCCC
T ss_pred             CCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCC--------------CCCCCCCC
Confidence            456789999998  8999999999999999999886              44999987

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=9.6e-08  Score=54.98  Aligned_cols=32  Identities=19%  Similarity=0.081  Sum_probs=17.9

Q ss_pred             cCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          279 HYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       279 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      +++++||+|+.++|+++|.+++.|..|+++|.
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            45556666653336666666666666665543

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.41  E-value=1.3e-07  Score=54.95  Aligned_cols=34  Identities=26%  Similarity=0.357  Sum_probs=26.5

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeec
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRC   97 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (362)
                      +++|.|+.|++.|.+...|..|+++|++++||.+
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4568888888888888888888888888877765

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.6e-08  Score=68.62  Aligned_cols=64  Identities=17%  Similarity=0.229  Sum_probs=52.6

Q ss_pred             HHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccCc
Q 048459          237 NIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHH  311 (362)
Q Consensus       237 ~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  311 (362)
                      .|..|+.++.+.   +++.|  +.|++.| ....|..|+  .|.+++||.|+.  |++.|. ...|..|++++..
T Consensus         4 ~L~~H~~~~c~~---r~~~C--~~C~~~~-~~~~L~~H~--~~c~~~~~~C~~--C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            4 GSSGHEETECPL---RLAVC--QHCDLEL-SILKLKEHE--DYCGARTELCGN--CGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCSCCCCCCCCC---CCEEC--SSSCCEE-CHHHHHHHH--HHHHHCEEECSS--SCCEEE-TTGGGTHHHHBTT
T ss_pred             HHHhhCcccCCC---cccCC--cccChHh-hHHHHHHHH--hHcCCCceEccc--CCCcCc-HHHHHHHHHHccC
Confidence            455666667665   67999  5599999 499999997  689999999999  999987 5999999987654

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.40  E-value=6.3e-08  Score=55.56  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=26.6

Q ss_pred             HHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          274 HVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       274 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      |++ .|++++||+|++  |++.|.+...|..|+++|.
T Consensus         2 H~~-~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STR-GSTGIKPFQCPD--CDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSS-TTCCSSSBCCTT--TCCCBSSHHHHHHHHGGGT
T ss_pred             CCC-cCCCCCCccCCC--CCcccCcHHHHHHHHHHhc
Confidence            444 778888888888  8888888888888887765

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.39  E-value=3e-08  Score=69.41  Aligned_cols=62  Identities=13%  Similarity=0.173  Sum_probs=51.2

Q ss_pred             HHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccCccccC
Q 048459          242 VRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSS  315 (362)
Q Consensus       242 ~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~  315 (362)
                      ..+|.++   ++|.|  +.|++.|.....|..|++ +|++++||+|..  |.    ....|..|.+++...+..
T Consensus        17 ~~~H~~~---kpy~C--~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~--~~----~~~~~~~~~~~~~~~~~~   78 (88)
T 1x6f_A           17 NGPRLQN---STYQC--KHCDSKLQSTAELTSHLN-IHNEEFQKRAKR--QE----RRKQLLSKQKYADGAFAD   78 (88)
T ss_dssp             CCSCCCC---SCEEC--SSSCCEESSHHHHHHHHH-HHHHHHHHHCCC--CS----CCCCCCCCCCCCCCSSSC
T ss_pred             ccccCCC---CCCcC--CCCCCEeCCHHHHHHHHH-HhCCCCCcccch--hh----hHHHHHhhhccccccccc
Confidence            3456665   67999  779999999999999998 999999999987  54    567788898888776544

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.1e-08  Score=69.41  Aligned_cols=52  Identities=19%  Similarity=0.255  Sum_probs=27.3

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG  121 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  121 (362)
                      +++.|+.|++.|. ...|..|+ .|.+.+|+.|..  |++.|. ...|..|++++.+
T Consensus        16 r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~--C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A           16 RLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGN--CGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSS--SCCEEE-TTGGGTHHHHBTT
T ss_pred             cccCCcccChHhh-HHHHHHHH-hHcCCCceEccc--CCCcCc-HHHHHHHHHHccC
Confidence            3355555555553 55555555 555555555533  555544 3555555555443

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.32  E-value=4.8e-07  Score=50.91  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=29.9

Q ss_pred             CCCCCccccccccccccchHHHHHHHHhhcccc
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKED   51 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   51 (362)
                      +.++++|.|.+|++.|...+.|..|++.|+++.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            467899999999999999999999999998753

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=5.5e-07  Score=51.07  Aligned_cols=34  Identities=21%  Similarity=0.409  Sum_probs=30.7

Q ss_pred             CCCCCCCccccccccccccchHHHHHHHHhhccc
Q 048459           17 PKSRDVRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        17 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ..+.++++|.|.+|++.|...+.|..|++.|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            4567889999999999999999999999999764

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.31  E-value=5.3e-07  Score=50.79  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=29.9

Q ss_pred             CCCCCccccccccccccchHHHHHHHHhhcccc
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKED   51 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   51 (362)
                      +.++++|.|.+|++.|...+.|..|++.|+++.
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            467899999999999999999999999998753

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=5.8e-07  Score=51.33  Aligned_cols=34  Identities=35%  Similarity=0.523  Sum_probs=30.9

Q ss_pred             CCCCCCccccccccccccchHHHHHHHHhhcccc
Q 048459           18 KSRDVRRYYCDYCGICRSKKSLILSHIASHHKED   51 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   51 (362)
                      .+.++++|.|.+|++.|...+.|..|++.|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            4678899999999999999999999999998763

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=7.5e-07  Score=50.47  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=30.8

Q ss_pred             CCCCCCCccccccccccccchHHHHHHHHhhccc
Q 048459           17 PKSRDVRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        17 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +.+.++++|.|.+|++.|.....|..|++.|+++
T Consensus         2 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            2 SSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            4567889999999999999999999999999864

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.29  E-value=6.8e-07  Score=58.08  Aligned_cols=57  Identities=28%  Similarity=0.449  Sum_probs=47.0

Q ss_pred             eeecccCccccccCchhHHHHHHhhcCCCc------ccccCCCCCCceeccchhhhhhhhccC
Q 048459          254 IKCQFKGCLLSFSTNSNLRQHVKAVHYEIK------PFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       254 ~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~------~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      |.|.|..|++.|.+...|..|+...|.+.+      +|.|.=.+|+..+.....|..|++..|
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            678888899999999999999866887665      799975569999888889999988654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=6.9e-07  Score=50.67  Aligned_cols=34  Identities=21%  Similarity=0.457  Sum_probs=30.5

Q ss_pred             CCCCCCCccccccccccccchHHHHHHHHhhccc
Q 048459           17 PKSRDVRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        17 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +.+.++++|.|.+|++.|.....|..|++.|.++
T Consensus         2 s~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             CTTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            4567889999999999999999999999999764

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.27  E-value=5.8e-07  Score=52.09  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=26.9

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCccccc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFAC  287 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C  287 (362)
                      ++|.|  +.|++.|.+.+.|..|++ .|+++++|.+
T Consensus         5 k~~~C--~~C~k~f~~~~~L~~H~~-~H~~~k~~~~   37 (39)
T 1njq_A            5 RSYTC--SFCKREFRSAQALGGHMN-VHRRDRARLR   37 (39)
T ss_dssp             SSEEC--TTTCCEESSHHHHHHHHH-TTCCSCTTTT
T ss_pred             CceEC--CCCCcccCCHHHHHHHHH-HcCCCcccee
Confidence            56888  668888888888888887 8888888875

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=7.2e-07  Score=50.60  Aligned_cols=34  Identities=21%  Similarity=0.458  Sum_probs=30.5

Q ss_pred             CCCCCCCccccccccccccchHHHHHHHHhhccc
Q 048459           17 PKSRDVRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        17 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ..+.++++|.|.+|++.|...+.|..|++.|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            3567889999999999999999999999998764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=6.4e-07  Score=50.81  Aligned_cols=33  Identities=15%  Similarity=0.139  Sum_probs=29.9

Q ss_pred             CCCCCCccccccccccccchHHHHHHHHhhccc
Q 048459           18 KSRDVRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      .+.++++|.|.+|++.|...+.|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            467889999999999999999999999998764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.26  E-value=5e-07  Score=50.24  Aligned_cols=32  Identities=19%  Similarity=0.408  Sum_probs=26.6

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCcccc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFA  286 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~  286 (362)
                      ++|.|  +.|++.|...+.|..|++ +|+++++|.
T Consensus         1 kp~~C--~~C~k~F~~~~~L~~H~~-~H~~~~~~~   32 (33)
T 1rim_A            1 YKFAC--PECPKRFMRSDHLSKHIT-LHELLGEER   32 (33)
T ss_dssp             CCCCC--SSSCCCCSSHHHHHHHHH-HHTTTCCCC
T ss_pred             CcccC--CCCCchhCCHHHHHHHHH-HhCCCCCCC
Confidence            36888  679999999999999987 888888875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.26  E-value=5.2e-07  Score=50.82  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             cCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          279 HYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       279 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      |+++++|.|.+  |++.|.+...|..|+++|.
T Consensus         2 H~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSS--SCCEESSHHHHHHHHGGGT
T ss_pred             CCCCcCeeCCC--CCcccCCHHHHHHHHHHcC
Confidence            56667777777  7777777777777776654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.25  E-value=1.5e-06  Score=56.48  Aligned_cols=14  Identities=36%  Similarity=0.441  Sum_probs=5.1

Q ss_pred             ccccccChhHHHHH
Q 048459          102 CHASYRRKDHLTRH  115 (362)
Q Consensus       102 C~~~f~~~~~l~~H  115 (362)
                      |++.|.+...|..|
T Consensus         9 C~~~f~~~~~l~~H   22 (64)
T 1zw8_A            9 CPESASSLFDLQRH   22 (64)
T ss_dssp             CCCCCSSHHHHHHH
T ss_pred             CCCcCCCHHHHHHH
Confidence            33333333333333

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.24  E-value=4.5e-07  Score=51.04  Aligned_cols=30  Identities=17%  Similarity=0.329  Sum_probs=19.5

Q ss_pred             cCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          279 HYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       279 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      |+++++|.|.+  |++.|.+...|..|+++|+
T Consensus         2 h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            2 SSGSSGYVCAL--CLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCSEECSS--SCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCeECCC--CcchhCCHHHHHHHHHHHc
Confidence            55666666666  6666666666666666654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.21  E-value=1.2e-07  Score=66.30  Aligned_cols=57  Identities=14%  Similarity=0.097  Sum_probs=37.6

Q ss_pred             CCCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccC
Q 048459           17 PKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLL   91 (362)
Q Consensus        17 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (362)
                      ..+.++++|.|.+|++.|...+.|..|+++|+++.              +|.|..|.    ....|..|.+.|.+
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ek--------------p~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEF--------------QKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHH--------------HHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCC--------------Ccccchhh----hHHHHHhhhccccc
Confidence            34567777777777777777777777777777653              37776544    34445556666554

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=8.2e-07  Score=50.70  Aligned_cols=29  Identities=24%  Similarity=0.495  Sum_probs=17.8

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCC
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLER   93 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (362)
                      ++|.|+.|++.|.....|..|+++|++++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            44666666666666666666666665554

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.17  E-value=1.4e-06  Score=49.64  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=29.9

Q ss_pred             CCCCCCccccccccccccch-HHHHHHHHhhccc
Q 048459           18 KSRDVRRYYCDYCGICRSKK-SLILSHIASHHKE   50 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~-~~l~~H~~~h~~~   50 (362)
                      .+.++++|.|..|++.|... +.|..|++.|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            46788999999999999999 9999999999764

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.16  E-value=4.9e-07  Score=51.65  Aligned_cols=34  Identities=35%  Similarity=0.631  Sum_probs=18.8

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQ  120 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~  120 (362)
                      |+++|++++||.|..  |++.|.....|..|+++|.
T Consensus         2 H~~~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTT--TCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCC--CCcccCcHHHHHHHHHHhc
Confidence            344555555566633  6666655555555555554

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.14  E-value=9.2e-07  Score=50.57  Aligned_cols=31  Identities=16%  Similarity=0.151  Sum_probs=23.9

Q ss_pred             hcCCCcccccCCCCCCceeccchhhhhh-hhccC
Q 048459          278 VHYEIKPFACSFFGCGMRFAFKHVRDNH-EKSGH  310 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~~h  310 (362)
                      .|++++||+|+.  |++.|.++..|..| +++|.
T Consensus         3 ~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            3 SGSSGHLYYCSQ--CHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSSSSCEEECSS--SSCEEECHHHHHHHHHHHTC
T ss_pred             ccCCCcCeECCC--CCcccCCHHHHHHHHHHHcc
Confidence            577788888887  88888888888888 66654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.13  E-value=8.6e-07  Score=50.14  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=17.5

Q ss_pred             CCCccccccccccccCChhHHHHHH
Q 048459           62 KGVQCNTCEECGASFKKPAYLKQHM   86 (362)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~   86 (362)
                      .++++|.|+.|+++|.+.+.|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            3456677777777777777777776

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.11  E-value=1.2e-06  Score=53.41  Aligned_cols=32  Identities=28%  Similarity=0.432  Sum_probs=27.0

Q ss_pred             hcCCCcccccCCCCCCceeccchhhhhhhh-ccCc
Q 048459          278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEK-SGHH  311 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~~h~  311 (362)
                      +|+++++|.|.+  |++.|.+...|..|++ +|..
T Consensus         1 ~Ht~~kp~~C~~--C~k~F~~~~~L~~H~~~~H~~   33 (48)
T 3iuf_A            1 GEDRDKPYACDI--CGKRYKNRPGLSYHYAHSHLA   33 (48)
T ss_dssp             -CTTTSCEECTT--TCCEESSHHHHHHHHHHSSCC
T ss_pred             CCCCCcCEECCC--cCcccCCHHHHHHHhhhhcCC
Confidence            488899999999  9999999999999998 6653

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.11  E-value=1.5e-06  Score=45.53  Aligned_cols=27  Identities=19%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             CCccccccccccccchHHHHHHHHhhc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      +++|.|..||+.|...+.|..|++.|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999999874

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.11  E-value=7.9e-07  Score=50.28  Aligned_cols=26  Identities=23%  Similarity=0.510  Sum_probs=15.9

Q ss_pred             cCCCcccccCCCCCCceeccchhhhhhh
Q 048459          279 HYEIKPFACSFFGCGMRFAFKHVRDNHE  306 (362)
Q Consensus       279 H~~~~~~~C~~~~C~~~f~~~~~l~~H~  306 (362)
                      +.+++||+|+.  ||++|.+++.|..|+
T Consensus         3 ~~gekp~~C~~--CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLP--CGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETT--TTEECSCHHHHHHHH
T ss_pred             CCCccCeECCC--CCCccCCHhHccCcC
Confidence            34556666666  666666666666665

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=9.6e-07  Score=50.00  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=22.3

Q ss_pred             hcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      .|+++++|+|.+  |++.|.+...|..|+++|.
T Consensus         3 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQ--CSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSS--SSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCC--CCcccCCHHHHHHHHHHcc
Confidence            466777777777  7777777777777777654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.10  E-value=3.7e-06  Score=54.82  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=32.5

Q ss_pred             CCCCCCCCccccccccccccchHHHHHHHHhhcccc
Q 048459           16 RPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKED   51 (362)
Q Consensus        16 ~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   51 (362)
                      ....+++++|.|.+|++.|...+.|.+|+++|++..
T Consensus         5 ~~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            5 SSGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             SCSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            345788999999999999999999999999999864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=1.5e-06  Score=49.20  Aligned_cols=31  Identities=19%  Similarity=0.254  Sum_probs=22.8

Q ss_pred             hcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      .|++++||+|.+  |++.|.+...|..|+++|.
T Consensus         3 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            3 SGSSGLLYDCHI--CERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CSCCCCCEECSS--SCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCeECCC--CCCccCCHHHHHHHHHHhc
Confidence            466777777777  7777777777777777654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.09  E-value=1.2e-07  Score=52.44  Aligned_cols=30  Identities=17%  Similarity=0.450  Sum_probs=26.9

Q ss_pred             cccccccccccCChhHHHHHHHhccCCCCe
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLLERPF   95 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   95 (362)
                      +|.|+.|++.|.....|.+|+++|++++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            589999999999999999999999988876

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.09  E-value=1.4e-06  Score=49.32  Aligned_cols=31  Identities=26%  Similarity=0.330  Sum_probs=22.7

Q ss_pred             hcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      .|++++||+|.+  |++.|.+...|..|+++|.
T Consensus         3 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            3 SGSSGKPFKCSL--CEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             SSCCCCSEECSS--SSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCccCCC--CCchhCCHHHHHHHHHHhc
Confidence            467777777777  7777777777777777654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.09  E-value=1.2e-06  Score=46.09  Aligned_cols=27  Identities=19%  Similarity=0.426  Sum_probs=24.7

Q ss_pred             CCccccccccccccchHHHHHHHHhhc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      +++|.|..|++.|...+.|..|++.|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999998874

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.08  E-value=1.7e-06  Score=45.80  Aligned_cols=28  Identities=32%  Similarity=0.522  Sum_probs=25.4

Q ss_pred             CCccccccccccccchHHHHHHHHhhcc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHK   49 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~   49 (362)
                      +++|.|..|++.|...+.|..|++.|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4689999999999999999999998753

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=2.2e-06  Score=48.89  Aligned_cols=33  Identities=24%  Similarity=0.469  Sum_probs=29.2

Q ss_pred             CCCCCCccccccccccccchHHHHHH-HHhhccc
Q 048459           18 KSRDVRRYYCDYCGICRSKKSLILSH-IASHHKE   50 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~~~l~~H-~~~h~~~   50 (362)
                      .+.+++||.|..|++.|...+.|..| ++.|.+.
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            45688999999999999999999999 8888653

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.06  E-value=2.4e-06  Score=45.82  Aligned_cols=29  Identities=31%  Similarity=0.777  Sum_probs=26.6

Q ss_pred             CCccccccccccccchHHHHHHHHhhccc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +++|.|..|++.|.....|..|++.|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            47899999999999999999999998764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.06  E-value=1.7e-06  Score=49.67  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=22.7

Q ss_pred             Ccccccc--ccccccCChhHHHHHHHhccCCCCe
Q 048459           64 VQCNTCE--ECGASFKKPAYLKQHMLSHLLERPF   95 (362)
Q Consensus        64 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~   95 (362)
                      +++|.|.  .|++.|.....|.+|+++|+++++|
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4557777  4777777777777777777776665

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.06  E-value=2e-06  Score=45.84  Aligned_cols=28  Identities=18%  Similarity=0.344  Sum_probs=25.9

Q ss_pred             CccccccccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ++|.|..|++.|...+.|..|++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            5899999999999999999999999764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.06  E-value=2.9e-06  Score=45.17  Aligned_cols=27  Identities=37%  Similarity=0.591  Sum_probs=22.2

Q ss_pred             cccccccccccCChhHHHHHHHhccCC
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      +|.|+.|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            478888888888888888888888765

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.06  E-value=2.9e-06  Score=45.16  Aligned_cols=28  Identities=25%  Similarity=0.572  Sum_probs=25.8

Q ss_pred             CccccccccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ++|.|..|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4799999999999999999999999764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.05  E-value=3.1e-06  Score=48.28  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=29.0

Q ss_pred             CCCCCcccccc--ccccccchHHHHHHHHhhccc
Q 048459           19 SRDVRRYYCDY--CGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        19 ~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +.++++|.|.+  |++.|...+.|..|+++|.++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            56789999995  999999999999999999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.05  E-value=1.4e-06  Score=49.23  Aligned_cols=31  Identities=23%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             hcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      .|+++++|.|.+  |++.|.+...|..|+++|.
T Consensus         3 ~h~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            3 SGSSGKTHLCDM--CGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCCSSCBCTT--TCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCeecCc--CCCCcCchHHHHHHHHHhc
Confidence            466677777777  7777777777777776654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.03  E-value=2.7e-06  Score=51.81  Aligned_cols=34  Identities=32%  Similarity=0.525  Sum_probs=29.0

Q ss_pred             CCCCCccccccccccccchHHHHHHHH-hhccccc
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIA-SHHKEDE   52 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~   52 (362)
                      +.++++|.|.+|++.|.....|..|++ .|.++..
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            568899999999999999999999999 8887654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.02  E-value=2.1e-06  Score=45.79  Aligned_cols=27  Identities=30%  Similarity=0.484  Sum_probs=21.3

Q ss_pred             cccccccccccCChhHHHHHHHhccCC
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      +|.|+.|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            477888888888888888888877764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.02  E-value=2.9e-06  Score=45.51  Aligned_cols=28  Identities=29%  Similarity=0.608  Sum_probs=22.0

Q ss_pred             ccccccccccccCChhHHHHHHHhccCC
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      ++|.|+.|++.|.....|..|++.|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            4578888888888888888888887764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=1.7e-06  Score=49.36  Aligned_cols=31  Identities=13%  Similarity=0.255  Sum_probs=22.4

Q ss_pred             hcCCCcccccCCCCCCceeccc-hhhhhhhhccC
Q 048459          278 VHYEIKPFACSFFGCGMRFAFK-HVRDNHEKSGH  310 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~-~~l~~H~~~~h  310 (362)
                      +|+++++|+|++  |++.|.+. ..|..|+++|.
T Consensus         3 ~h~~~k~~~C~~--C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            3 SGSSGRAMKCPY--CDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             SCCCCCCEECSS--SSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCeECCC--CChhhccCHHHHHHHHHhcC
Confidence            567777777777  77777777 77777777653

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.01  E-value=7.8e-07  Score=54.02  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=20.9

Q ss_pred             hcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      .|++++||+|.+++|++.|.+.+.|..|+++|.
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            566677777741127777777777777766654

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.00  E-value=3.8e-06  Score=45.04  Aligned_cols=28  Identities=18%  Similarity=0.329  Sum_probs=22.6

Q ss_pred             cccccccccccCChhHHHHHHHhccCCC
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLLER   93 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (362)
                      +|.|+.|++.|.....|..|+++|+++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            4788888888888888888888887664

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=3.7e-06  Score=44.70  Aligned_cols=28  Identities=21%  Similarity=0.349  Sum_probs=26.0

Q ss_pred             CccccccccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ++|.|..|++.|.....|..|++.|.++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            5799999999999999999999999764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.99  E-value=4e-06  Score=44.93  Aligned_cols=28  Identities=29%  Similarity=0.717  Sum_probs=26.1

Q ss_pred             CccccccccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ++|.|..|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccC
Confidence            5799999999999999999999999875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=2.5e-06  Score=48.28  Aligned_cols=31  Identities=29%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             hcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      .|.++++|+|.+  |++.|.+...|..|+++|.
T Consensus         3 ~~~~~k~~~C~~--C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            3 SGSSGKIFTCEY--CNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TTSCCCCEECTT--TCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCEECCC--CCceeCCHHHHHHHHHHhC
Confidence            355666666666  6666666666666666554

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.97  E-value=3.8e-06  Score=44.61  Aligned_cols=28  Identities=14%  Similarity=0.281  Sum_probs=26.0

Q ss_pred             CccccccccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ++|.|..|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            5899999999999999999999999875

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.97  E-value=3.7e-06  Score=44.66  Aligned_cols=27  Identities=26%  Similarity=0.615  Sum_probs=22.2

Q ss_pred             cccccccccccCChhHHHHHHHhccCC
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      +|.|+.|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            578888888888888888888888765

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.96  E-value=4.9e-06  Score=45.16  Aligned_cols=27  Identities=30%  Similarity=0.512  Sum_probs=22.2

Q ss_pred             ccccc--ccccccCChhHHHHHHHhccCC
Q 048459           66 CNTCE--ECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        66 ~~~C~--~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      +|.|+  .|++.|.....|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            57887  8888888888888888888765

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.96  E-value=5.8e-06  Score=47.32  Aligned_cols=32  Identities=19%  Similarity=0.351  Sum_probs=29.0

Q ss_pred             CCCCccccc--cccccccchHHHHHHHHhhcccc
Q 048459           20 RDVRRYYCD--YCGICRSKKSLILSHIASHHKED   51 (362)
Q Consensus        20 ~~~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~~   51 (362)
                      .++++|.|.  .|++.|...+.|.+|++.|.++.
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   35 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTL   35 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCC
Confidence            578999999  59999999999999999998864

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.95  E-value=2.7e-06  Score=44.63  Aligned_cols=25  Identities=16%  Similarity=0.425  Sum_probs=14.0

Q ss_pred             cccccCCCCCCceeccchhhhhhhhcc
Q 048459          283 KPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       283 ~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      +||+|+.  ||+.|.+.+.|..|+++|
T Consensus         2 k~~~C~~--C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPL--CRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETT--TTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCC--CCcccCCHHHHHHHHHhc
Confidence            4555555  555555555555555543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.95  E-value=3.8e-06  Score=43.86  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=23.7

Q ss_pred             ccccccccccccchHHHHHHHHhhcc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHK   49 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~   49 (362)
                      +|.|..|++.|...+.|..|++.|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            58999999999999999999999875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.94  E-value=3.6e-06  Score=44.74  Aligned_cols=27  Identities=37%  Similarity=0.626  Sum_probs=20.9

Q ss_pred             cccccccccccCChhHHHHHHHhccCC
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      +|.|+.|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            477888888888888888888777664

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.94  E-value=3.5e-06  Score=44.11  Aligned_cols=25  Identities=32%  Similarity=0.560  Sum_probs=13.9

Q ss_pred             cccccCCCCCCceeccchhhhhhhhcc
Q 048459          283 KPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       283 ~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      +||.|..  ||+.|.+...|..|+++|
T Consensus         2 k~~~C~~--C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSL--CPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSS--SSCEESSHHHHHHHHHHC
T ss_pred             cCccCCC--cChhhCCHHHHHHHHHHc
Confidence            4555555  555555555555555543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.94  E-value=4.3e-06  Score=43.65  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             cccccccccccCChhHHHHHHHhccC
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLL   91 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (362)
                      +|.|+.|++.|.+...|.+|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            37888888888888888888888865

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.93  E-value=6.2e-06  Score=45.08  Aligned_cols=29  Identities=28%  Similarity=0.516  Sum_probs=26.5

Q ss_pred             CCccccc--cccccccchHHHHHHHHhhccc
Q 048459           22 VRRYYCD--YCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        22 ~k~~~C~--~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +++|.|.  .|++.|...+.|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4789999  8999999999999999999864

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.93  E-value=5.6e-06  Score=44.93  Aligned_cols=28  Identities=29%  Similarity=0.650  Sum_probs=25.8

Q ss_pred             Cccccc--cccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCD--YCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~--~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +||.|.  .|++.|...+.|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            589998  9999999999999999999874

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.15  E-value=1.3e-06  Score=46.62  Aligned_cols=28  Identities=25%  Similarity=0.567  Sum_probs=25.8

Q ss_pred             CccccccccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ++|.|..|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            5799999999999999999999998764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.92  E-value=7e-06  Score=44.87  Aligned_cols=28  Identities=25%  Similarity=0.460  Sum_probs=22.3

Q ss_pred             cccccc--ccccccCChhHHHHHHHhccCC
Q 048459           65 QCNTCE--ECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        65 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      ++|.|+  .|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            458888  7888888888888888888765

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.92  E-value=4.7e-06  Score=43.94  Aligned_cols=25  Identities=40%  Similarity=0.994  Sum_probs=14.9

Q ss_pred             cccccCCCCCCceeccchhhhhhhhcc
Q 048459          283 KPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       283 ~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      ++|+|.+  |++.|.+...|..|+++|
T Consensus         2 k~~~C~~--C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            2 RPYSCSV--CGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CSEECSS--SCCEESCHHHHHHHHTTS
T ss_pred             cCccCCC--CCcccCCHHHHHHHHHhc
Confidence            4566666  666666666666665554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.15  E-value=1.4e-06  Score=45.28  Aligned_cols=26  Identities=31%  Similarity=0.651  Sum_probs=24.0

Q ss_pred             CccccccccccccchHHHHHHHHhhc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      ++|.|..||+.|...+.|..|++.|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999998873

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.92  E-value=7.8e-07  Score=54.03  Aligned_cols=42  Identities=24%  Similarity=0.504  Sum_probs=33.8

Q ss_pred             HHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCc
Q 048459          238 IKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIK  283 (362)
Q Consensus       238 l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  283 (362)
                      +..|+..|.++   ++|.|.++.|++.|...+.|..|++ .|++++
T Consensus         6 ~~~~~~~H~~~---k~~~C~~~~C~k~F~~~~~L~~H~~-~H~~ek   47 (47)
T 1ncs_A            6 SIDKYVKEMPD---KTFECLFPGCTKTFKRRYNIRSHIQ-THLEDR   47 (47)
T ss_dssp             SGGGSCEEETT---TEEECCCTTCCCEECSSSSHHHHHH-HHTTTC
T ss_pred             HHHHHhccCCC---CCeECCCCCCCCccCCHHHHHHHHH-HccCCC
Confidence            34455668776   6799955579999999999999998 898864

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.14  E-value=1.5e-06  Score=46.49  Aligned_cols=27  Identities=30%  Similarity=0.504  Sum_probs=21.7

Q ss_pred             cccccccccccCChhHHHHHHHhccCC
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      +|.|+.|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            478888888888888888888887764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.13  E-value=1.6e-06  Score=46.69  Aligned_cols=29  Identities=21%  Similarity=0.394  Sum_probs=26.4

Q ss_pred             CCccccccccccccchHHHHHHHHhhccc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +++|.|..|++.|...+.|..|++.|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            46899999999999999999999998764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.87  E-value=5.9e-07  Score=49.52  Aligned_cols=24  Identities=33%  Similarity=0.609  Sum_probs=12.5

Q ss_pred             ccccCCCCCCceeccchhhhhhhhcc
Q 048459          284 PFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       284 ~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      ||+|.+  |++.|.+.+.|..|+++|
T Consensus         2 p~~C~~--C~k~f~~~~~L~~H~~~H   25 (32)
T 2kfq_A            2 AFACPA--CPKRFMRSDALSKHIKTA   25 (32)
T ss_dssp             CSSSSS--SCTTHHHHHTTSSSTTSS
T ss_pred             CCCCCC--CCcccCCHHHHHHHHHHH
Confidence            455555  555555555555555544

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.07  E-value=2.1e-06  Score=46.17  Aligned_cols=28  Identities=29%  Similarity=0.522  Sum_probs=22.1

Q ss_pred             ccccccccccccCChhHHHHHHHhccCC
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      ++|.|+.|++.|.+...|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4578888888888888888888887764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.84  E-value=8.2e-06  Score=46.42  Aligned_cols=29  Identities=28%  Similarity=0.504  Sum_probs=18.5

Q ss_pred             Cccccccc--cccccCChhHHHHHHHhccCC
Q 048459           64 VQCNTCEE--CGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        64 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      .++|.|.+  |++.|.....|.+|+++|+++
T Consensus         6 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            45566663  666666666666666666654

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.99  E-value=3.1e-06  Score=43.84  Aligned_cols=25  Identities=36%  Similarity=0.727  Sum_probs=16.2

Q ss_pred             cccccCCCCCCceeccchhhhhhhhcc
Q 048459          283 KPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       283 ~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      +||+|+.  ||+.|.+...|..|+++|
T Consensus         1 kp~~C~~--C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCER--CGKRFVQSSQLANHIRHH   25 (26)
Confidence            3566666  666666666666666654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.78  E-value=1e-05  Score=43.30  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=22.1

Q ss_pred             cccccccccccCChhHHHHH-HHhccCC
Q 048459           66 CNTCEECGASFKKPAYLKQH-MLSHLLE   92 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H-~~~h~~~   92 (362)
                      +|.|+.|++.|.+...|..| +++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            58888888888888888888 5777765

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.76  E-value=9.6e-06  Score=43.45  Aligned_cols=28  Identities=21%  Similarity=0.600  Sum_probs=24.7

Q ss_pred             CccccccccccccchHHHHHH-HHhhccc
Q 048459           23 RRYYCDYCGICRSKKSLILSH-IASHHKE   50 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H-~~~h~~~   50 (362)
                      ++|.|..|++.|...+.|..| ++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            579999999999999999999 6777654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.75  E-value=8.9e-06  Score=53.00  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=18.0

Q ss_pred             cCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          279 HYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       279 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      |.+++||+|..  |++.|.+...|..|+++|.
T Consensus         8 ~~~ekpy~C~~--CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A            8 LREAGILPCGL--CGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             CCCCCCCCCTT--TCCCCSCHHHHHHHHHHHT
T ss_pred             CCCccCcCCCC--CCCccCCHHHHHhhhhhhC
Confidence            44556666666  6666666666666666554

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.68  E-value=2e-05  Score=41.65  Aligned_cols=27  Identities=22%  Similarity=0.418  Sum_probs=24.6

Q ss_pred             Cccccc--cccccccchHHHHHHHHhhcc
Q 048459           23 RRYYCD--YCGICRSKKSLILSHIASHHK   49 (362)
Q Consensus        23 k~~~C~--~C~~~f~~~~~l~~H~~~h~~   49 (362)
                      ++|.|.  .|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            479999  999999999999999998863

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.59  E-value=2.7e-05  Score=41.16  Aligned_cols=25  Identities=32%  Similarity=0.634  Sum_probs=16.7

Q ss_pred             ccccc--ccccccCChhHHHHHHHhcc
Q 048459           66 CNTCE--ECGASFKKPAYLKQHMLSHL   90 (362)
Q Consensus        66 ~~~C~--~C~~~f~~~~~l~~H~~~h~   90 (362)
                      +|.|+  .|++.|.....|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            36666  77777777777777766664

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.84  E-value=0.0013  Score=48.95  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=23.0

Q ss_pred             CccccccccccccchHHHHHHH--Hhhcc
Q 048459           23 RRYYCDYCGICRSKKSLILSHI--ASHHK   49 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~--~~h~~   49 (362)
                      +++.|.+|+..|.+.+.+..|.  +.|..
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~   59 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHAN   59 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHH
Confidence            5699999999999999999999  45543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.04  E-value=0.0018  Score=47.24  Aligned_cols=35  Identities=17%  Similarity=0.139  Sum_probs=30.0

Q ss_pred             cCCCCCCCCCccccccccccccchHHHHHHHHhhc
Q 048459           14 EERPKSRDVRRYYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        14 ~~~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      .....+.|.++|.|..|++.|.+.+.|..|+++..
T Consensus        40 ~~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           40 EFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             SSCSSSGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             cccccCCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            34566789999999999999999999999997543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.01  E-value=0.0015  Score=47.63  Aligned_cols=30  Identities=17%  Similarity=0.028  Sum_probs=27.6

Q ss_pred             hcCCCcccccCCCCCCceeccchhhhhhhhcc
Q 048459          278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      -|+|+++|.|..  |++.|.+...|..|+++.
T Consensus        44 d~tGekpfyC~~--C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRCLA--CARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEETT--TTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEccc--CcchhCCHHHHHHHHhhh
Confidence            688999999999  999999999999999854

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.79  E-value=0.022  Score=33.06  Aligned_cols=32  Identities=19%  Similarity=0.221  Sum_probs=27.3

Q ss_pred             CCCCccccccccccccchHHHHHHHHhhcccc
Q 048459           20 RDVRRYYCDYCGICRSKKSLILSHIASHHKED   51 (362)
Q Consensus        20 ~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   51 (362)
                      .+..+|.|+-|+..|...+.|+.||+..-++.
T Consensus         8 ~~~~~~~CPrCn~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A            8 QDGGRKICPRCNAQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             CCSSCCCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred             ccCCceeCCcccccccchHHHHhhhhhcCcch
Confidence            34488999999999999999999999766653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.78  E-value=0.015  Score=45.68  Aligned_cols=81  Identities=20%  Similarity=0.443  Sum_probs=40.8

Q ss_pred             CeecccccccccccChhHHHHHHHHcCCCcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcch
Q 048459           94 PFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGK  173 (362)
Q Consensus        94 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~  173 (362)
                      ...|+..+|+..+. ...|..|+..-.-.+..|+.  |+..+ .+..|..|+...-          ..+...|+.  |+.
T Consensus        82 ~v~C~n~GC~~~~~-~~~l~~H~~~C~~~~v~C~~--C~~~~-~r~~l~~H~~~~C----------~~r~~~C~~--C~~  145 (170)
T 3hcs_A           82 MVKCPNEGCLHKME-LRHLEDHQAHCEFALMDCPQ--CQRPF-QKFHINIHILKDC----------PRRQVSCDN--CAA  145 (170)
T ss_dssp             EEECCSTTCCCEEE-GGGHHHHHTTCTTSEEECTT--TCCEE-EGGGHHHHHHHTC----------TTCEEECTT--TCC
T ss_pred             ccCCCCCCCCceec-HhHHHHHHhcCCceeeECCC--CChHH-HHHHHHHHhhhhC----------CCCCeECCC--CCC
Confidence            34554334655443 34455665322225556653  66655 3555666664222          234455666  666


Q ss_pred             hccCHHHHHhHHhhccCc
Q 048459          174 VFKYASKLRQHEDSHVNL  191 (362)
Q Consensus       174 ~f~~~~~l~~H~~~h~~~  191 (362)
                      .+... .|..|...+.|.
T Consensus       146 ~~~~~-~l~~H~~~~~~~  162 (170)
T 3hcs_A          146 SMAFE-DKEIHDQNCPLA  162 (170)
T ss_dssp             EEEGG-GHHHHHTTCCC-
T ss_pred             ccCHH-HHHhHHHhCcCh
Confidence            55443 456666555543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.69  E-value=0.01  Score=44.00  Aligned_cols=76  Identities=16%  Similarity=0.256  Sum_probs=46.6

Q ss_pred             ccccccccccccCChhHHHHHH--HhccCC-CCeeccc----ccccccccChhHHHHHHHHcCC-CcccCCccCCchhcc
Q 048459           65 QCNTCEECGASFKKPAYLKQHM--LSHLLE-RPFRCSV----DDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFT  136 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~--~~h~~~-~~~~C~~----~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~  136 (362)
                      +++.|.+|+..|.+...+..|.  +.|... +.+.+..    +.=++.+....    +...+.+ ..|.|.+  |+..|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~--C~~~f~  104 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPV--CNMTFS  104 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETT--TTEECS
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCC--CCCEeC
Confidence            4588999999999999999998  445321 1222210    00012222111    1111222 6788987  999999


Q ss_pred             ChhHHHHHHH
Q 048459          137 IQGNMKRHVK  146 (362)
Q Consensus       137 ~~~~l~~H~~  146 (362)
                      +...|..|+.
T Consensus       105 s~~~~~~H~~  114 (127)
T 1zu1_A          105 SPVVAESHYI  114 (127)
T ss_dssp             SHHHHHHHHT
T ss_pred             CHHHHHHHHC
Confidence            9999988875

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.65  E-value=0.0098  Score=34.56  Aligned_cols=24  Identities=29%  Similarity=0.575  Sum_probs=21.3

Q ss_pred             ccccccccccccCChhHHHHHHHh
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLS   88 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~   88 (362)
                      ..|.|+.|+..|.....|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            568999999999999999999973

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.09  E-value=0.054  Score=42.41  Aligned_cols=71  Identities=15%  Similarity=0.320  Sum_probs=37.7

Q ss_pred             CCCcccchhHHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhh
Q 048459          228 ICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEK  307 (362)
Q Consensus       228 ~C~~~~~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~  307 (362)
                      -|+.......|..|...-.    ..++.|  +.|+..+ ....|..|+. ..-..++-.|+.  |+..+. ...|..|..
T Consensus        89 GC~~~~~~~~l~~H~~~C~----~~~v~C--~~C~~~~-~r~~l~~H~~-~~C~~r~~~C~~--C~~~~~-~~~l~~H~~  157 (170)
T 3hcs_A           89 GCLHKMELRHLEDHQAHCE----FALMDC--PQCQRPF-QKFHINIHIL-KDCPRRQVSCDN--CAASMA-FEDKEIHDQ  157 (170)
T ss_dssp             TCCCEEEGGGHHHHHTTCT----TSEEEC--TTTCCEE-EGGGHHHHHH-HTCTTCEEECTT--TCCEEE-GGGHHHHHT
T ss_pred             CCCceecHhHHHHHHhcCC----ceeeEC--CCCChHH-HHHHHHHHhh-hhCCCCCeECCC--CCCccC-HHHHHhHHH
Confidence            4555555555555553222    234566  5566665 4455666654 344455556666  666553 344566665


Q ss_pred             cc
Q 048459          308 SG  309 (362)
Q Consensus       308 ~~  309 (362)
                      ..
T Consensus       158 ~~  159 (170)
T 3hcs_A          158 NC  159 (170)
T ss_dssp             TC
T ss_pred             hC
Confidence            43

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.31  E-value=0.074  Score=28.87  Aligned_cols=29  Identities=31%  Similarity=0.503  Sum_probs=24.3

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCC
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEI  282 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  282 (362)
                      ..|.|  +.|.+.|.+...|..|....|...
T Consensus         4 EGFiC--P~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            4 EGFIC--PQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EEEEC--TTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             cccCC--cHHHHHcCCHHHHHHHHHhccccC
Confidence            35899  779999999999999998888654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=91.83  E-value=0.13  Score=27.91  Aligned_cols=27  Identities=15%  Similarity=0.370  Sum_probs=24.1

Q ss_pred             ccccccccccccchHHHHHHHHhhccc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      -|.|++|.+.|.+...|..|....|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            399999999999999999999876654

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=88.56  E-value=0.45  Score=25.90  Aligned_cols=27  Identities=26%  Similarity=0.445  Sum_probs=23.5

Q ss_pred             CCCCccccccccccccchHHHHHHHHh
Q 048459           20 RDVRRYYCDYCGICRSKKSLILSHIAS   46 (362)
Q Consensus        20 ~~~k~~~C~~C~~~f~~~~~l~~H~~~   46 (362)
                      .+...+.|..|+..|.+...+..|.+-
T Consensus         4 ~~~~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            4 AEVMKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCCCCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CccCcCeeccccceehhhHHHhhhhee
Confidence            355679999999999999999999874

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=87.26  E-value=0.14  Score=33.66  Aligned_cols=38  Identities=26%  Similarity=0.563  Sum_probs=17.9

Q ss_pred             cCCCCCCcccchhHHHHHHHhhccCCCCCceeecccCcccccc
Q 048459          224 IPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFS  266 (362)
Q Consensus       224 ~~C~~C~~~~~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~  266 (362)
                      |.|..||.+..+..|..|...-.+-   ..|.|  -.|++.|.
T Consensus        11 F~C~~Cgd~lKK~kv~~H~~~Cr~~---~~~SC--IDC~~~F~   48 (79)
T 1wjv_A           11 FTCNACGESVKKIQVEKHVSNCRNC---ECLSC--IDCGKDFW   48 (79)
T ss_dssp             EEESSSCCEEETTHHHHHHHHCTTC---CEEEE--TTTTEEEE
T ss_pred             EEcCCCCCeeecccchhHHhhCCCC---CcEEe--cccCCeeC
Confidence            3455555555555555554433321   13555  44555554

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=87.20  E-value=0.45  Score=28.49  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=20.0

Q ss_pred             cccccccccccchHHHHHHHHh
Q 048459           25 YYCDYCGICRSKKSLILSHIAS   46 (362)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~H~~~   46 (362)
                      -.|.+|+..|..+.+++.|+-+
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs   35 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFS   35 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTS
T ss_pred             ccccccCcccccccchhhhhcc
Confidence            5999999999999999999853

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=86.02  E-value=1.2  Score=24.24  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=17.2

Q ss_pred             ccccccccccccCChhHHHHHHHh
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLS   88 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~   88 (362)
                      ..+.|..|+.+|++...+..|.+-
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhee
Confidence            346777787788777777777654

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=85.54  E-value=0.48  Score=24.75  Aligned_cols=25  Identities=32%  Similarity=0.707  Sum_probs=20.4

Q ss_pred             eeecccCccccccCchhHHHHHHhhcC
Q 048459          254 IKCQFKGCLLSFSTNSNLRQHVKAVHY  280 (362)
Q Consensus       254 ~~C~~~~C~~~f~~~~~L~~H~~~~H~  280 (362)
                      --|.|  |.+.++...+|..|++..|.
T Consensus        10 qhcrf--ckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRF--CKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETT--TTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence            45756  99999999999999987664

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=85.34  E-value=1.2  Score=23.27  Aligned_cols=25  Identities=24%  Similarity=0.474  Sum_probs=22.3

Q ss_pred             cccccccccccchHHHHHHHHhhcc
Q 048459           25 YYCDYCGICRSKKSLILSHIASHHK   49 (362)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~H~~~h~~   49 (362)
                      -.|.+|.+.|++..+|..|++..|.
T Consensus        10 qhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5699999999999999999997654

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=85.30  E-value=0.56  Score=31.54  Aligned_cols=38  Identities=21%  Similarity=0.256  Sum_probs=28.8

Q ss_pred             cccCCCCCCCCCccccccccccccchHHHHHHHHhhccccc
Q 048459           12 GLEERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDE   52 (362)
Q Consensus        12 ~~~~~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   52 (362)
                      +..+.......+...|-+||+.|..   |.+|+..+++..+
T Consensus         9 pav~~kksi~~d~iiClecGK~fK~---LkRHL~~~hgltp   46 (87)
T 2jsp_A            9 PAVSVRKSVQDDHIVCLECGGSFKS---LKRHLTTHHSMTP   46 (87)
T ss_dssp             CCCCSSTTBCSSCEECTBTCCEESB---HHHHHHHTTCSCH
T ss_pred             CCCChhhccCCCceEecccchhhHH---HHHHHHHccCCCH
Confidence            3334445556677899999999995   7799999887655

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=84.25  E-value=1.7  Score=25.99  Aligned_cols=47  Identities=21%  Similarity=0.270  Sum_probs=37.9

Q ss_pred             cccccccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccccccc-ccCChhHHHHHHHh
Q 048459           25 YYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGA-SFKKPAYLKQHMLS   88 (362)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~-~f~~~~~l~~H~~~   88 (362)
                      -.|.+|.....+...|..|.......                 +||.|-. ...+.++|+.|.+.
T Consensus         4 mvC~~C~~ECET~kEl~~H~~sCp~g-----------------qCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            4 MVCDVCHHECETAKELESHRQSCING-----------------QCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             TBCTTTCCBCSSTTTHHHHHHHHTTT-----------------BCTTTCCBCCSSHHHHHHHHTT
T ss_pred             chhhHHHhhhhhHHHHHHHhccCCCC-----------------CCCcccCcCCcCHHHHHHHHHH
Confidence            57999999999999999999888763                 6888854 56778889988653

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=83.07  E-value=0.4  Score=28.08  Aligned_cols=15  Identities=27%  Similarity=0.791  Sum_probs=12.5

Q ss_pred             Cccccccccccccch
Q 048459           23 RRYYCDYCGICRSKK   37 (362)
Q Consensus        23 k~~~C~~C~~~f~~~   37 (362)
                      +.|.|.+||..|.-.
T Consensus         3 ~~y~C~vCGyvyd~~   17 (46)
T 6rxn_A            3 QKYVCNVCGYEYDPA   17 (46)
T ss_dssp             CCEEETTTCCEECGG
T ss_pred             CEEECCCCCeEEeCC
Confidence            579999999998743

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=80.91  E-value=0.74  Score=30.23  Aligned_cols=45  Identities=27%  Similarity=0.511  Sum_probs=27.9

Q ss_pred             ccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHH
Q 048459           67 NTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRH  115 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H  115 (362)
                      |.|..|+.++. +..|..|...-.+...|.|  -+|++.|.. ..++.|
T Consensus        11 F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SC--IDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A           11 FTCNACGESVK-KIQVEKHVSNCRNCECLSC--IDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             EEESSSCCEEE-TTHHHHHHHHCTTCCEEEE--TTTTEEEEG-GGTTTC
T ss_pred             EEcCCCCCeee-cccchhHHhhCCCCCcEEe--cccCCeeCC-CCEeCE
Confidence            67777777665 4567777655444455777  457777764 334444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	362
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	1e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.001
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	0.001
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	0.002
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.003
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	0.004

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (85), Expect = 1e-04
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 92  ERPFRCSVDDCHASYRRKDHLTRHLLRHQGK 122
           +RP+ C    C  ++ R   L RH   HQ K
Sbjct: 1   DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 68 TCEECGASFKKPAYLKQHM-LSHLLERPFRCSV 99
           C+ CG  F +P +L  H+   H  ERP +C V
Sbjct: 7  ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 93  RPFRCSVDDCHASYRRKDHLTRHLLRH 119
           RP+ C  D C+  + +  +L  H+L H
Sbjct: 1   RPYVCPFDGCNKKFAQSTNLKSHILTH 27

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 93  RPFRCSVDDCHASYRRKDHLTRHLLRHQG 121
           RP+ C V+ C   + R   LTRH+  H G
Sbjct: 1   RPYACPVESCDRRFSRSADLTRHIRIHTG 29

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 71  ECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRH 119
           +CG SF   +   +HM  HL  RP+ C    C   ++ K HL  H+  H
Sbjct: 7   QCGKSFTHKSQRDRHMSMHLGLRPYGC--GVCGKKFKMKHHLVGHMKIH 53

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.004
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 93  RPFRCSVDDCHASYRRKDHLTRHLLRHQG 121
           +P +C+ + C  SY R ++L  HL  H G
Sbjct: 1   KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	362
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.55
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.51
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.08
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.04
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.0
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.99
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.99
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.93
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.92
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.92
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.9
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.9
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.88
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.87
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.84
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.81
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.81
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.81
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.8
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.79
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.79
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.79
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.79
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.77
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.76
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.75
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.74
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.73
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.71
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.66
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.66
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.61
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.59
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.57
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.56
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.53
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.47
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.47
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.47
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.18
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.13
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.12
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.97
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.94
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.93
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.93
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.87
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.76
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.68
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.67
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.6
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.51
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.51
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.5
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.49
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.45
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.44
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.43
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.42
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.4
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.35
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.35
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.26
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.26
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.21
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.19
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.17
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.16
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.11
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.11
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.03
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.02
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.99
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.96
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.92
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.75
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.74
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.72
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.67
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.57
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	96.37
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.26
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.24
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.03
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.02
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.96
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.82
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.64
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.59
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.5
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.47
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.44
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.33
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.18
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.11
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.1
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.05
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.02
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	94.94
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.66
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.62
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.12
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.05
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.03
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	93.67
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.62
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	92.76
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.62
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.46
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.24
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	92.18
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	92.11
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.08
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	90.89
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	90.68
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.38
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	89.37
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.22
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	87.82
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	87.71
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	86.11
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	84.32
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	83.78
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	82.99

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.6e-15  Score=94.14  Aligned_cols=52  Identities=31%  Similarity=0.693  Sum_probs=49.8

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhcc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      ++|+|  . ||+.|.....|..|++ +|++++||+|.+  ||++|.+.+.|..|+++|
T Consensus         2 K~y~C--~-Cgk~F~~~~~l~~H~~-~Ht~ekpy~C~~--C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPC--Q-CGKSFTHKSQRDRHMS-MHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEEC--T-TSCEESSHHHHHHHHH-HHSCCCSEECTT--TSCEESSSHHHHHHHTTT
T ss_pred             cCCCC--C-CCCeECCHHHhHHHhh-ccccccCCcCCC--cCCEecCHHHHHHHHhcC
Confidence            68999  7 9999999999999998 999999999999  999999999999999876

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.7e-15  Score=91.96  Aligned_cols=53  Identities=36%  Similarity=0.725  Sum_probs=48.9

Q ss_pred             CccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHc
Q 048459           64 VQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRH  119 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h  119 (362)
                      +++|+| .||+.|.....|..|+++|++++||.|..  |+++|...+.|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~--C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTT--TSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCC--cCCEecCHHHHHHHHhcC
Confidence            367999 49999999999999999999999999955  999999999999999876

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.3e-12  Score=71.65  Aligned_cols=37  Identities=30%  Similarity=0.617  Sum_probs=34.1

Q ss_pred             CCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          251 SERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       251 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      .+||.|  ++||+.|...+.|.+|++.+|++++||+|.+
T Consensus         3 ~Kpy~C--~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEEC--SSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccC--CCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            478999  7799999999999999987899999999975

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.2e-11  Score=67.55  Aligned_cols=35  Identities=34%  Similarity=0.776  Sum_probs=30.9

Q ss_pred             CccccccccccccCChhHHHHHHH-hccCCCCeecc
Q 048459           64 VQCNTCEECGASFKKPAYLKQHML-SHLLERPFRCS   98 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~   98 (362)
                      ++||.|..|++.|.....|.+|++ +|++++||.|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            577999999999999999999986 69999999985

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.8e-11  Score=66.06  Aligned_cols=35  Identities=29%  Similarity=0.720  Sum_probs=32.8

Q ss_pred             eeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459          254 IKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF  289 (362)
Q Consensus       254 ~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  289 (362)
                      |.|+++.|+++|.+++.|.+|++ +|+|++||+|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r-~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMK-LHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHH-HHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccC-eeCCCCCEeCCC
Confidence            88988899999999999999999 899999999973

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=3.1e-11  Score=67.29  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=29.8

Q ss_pred             HHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          274 HVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       274 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      |.+ .|++++||+|..  |+++|.++++|..|+++|-
T Consensus         2 h~R-~HTgeKPy~C~~--C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STR-GSTGIKPFQCPD--CDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSS-TTCCSSSBCCTT--TCCCBSSHHHHHHHHGGGT
T ss_pred             CCC-ccCCccCeEeCC--CCCEecCHHHHHHHHhcCc
Confidence            445 899999999999  9999999999999998874

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.2e-11  Score=65.05  Aligned_cols=32  Identities=41%  Similarity=0.628  Sum_probs=29.2

Q ss_pred             hcCCCcccccCCCCCCceeccchhhhhhhhccCc
Q 048459          278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHH  311 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  311 (362)
                      +|+|++||+|.+  ||++|.+++.|..|+++|+.
T Consensus         2 ~HTgekPy~C~~--C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           2 THTGEKPYACSH--CDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TCCCCCCEECSS--SSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCEECCC--CCCCcCCHhHHHHhCcccCC
Confidence            799999999999  99999999999999998874

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8e-11  Score=63.20  Aligned_cols=31  Identities=26%  Similarity=0.581  Sum_probs=25.4

Q ss_pred             hcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      +|++++||+|..  ||++|.+++.|..|+++|.
T Consensus         1 IHTgekpy~C~~--Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVE--CGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSS--SCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCC--CCCEeCchHHhHhhccccC
Confidence            578888888888  8888888888888888764

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.9e-11  Score=66.63  Aligned_cols=34  Identities=18%  Similarity=0.370  Sum_probs=26.8

Q ss_pred             HHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          274 HVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       274 H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      |++ +|++++||+|+.  |||+|.+.++|..|+++|.
T Consensus         3 H~~-~Ht~ekpy~C~~--CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           3 SEW-QQRERRRYKCDE--CGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCS-CCCCSCSSBCSS--SCCBCSCHHHHHHHHTTTC
T ss_pred             cCc-ccCCCCCEecCC--CCceeeCHHHHHHhCccCC
Confidence            555 788888888888  8888888888888888765

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=2e-10  Score=62.48  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=26.2

Q ss_pred             cCCCcccccCCCCCCceeccchhhhhhhhccCc
Q 048459          279 HYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHH  311 (362)
Q Consensus       279 H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  311 (362)
                      |+|++||+|.+  |++.|.++++|..|+++|..
T Consensus         2 ~TGekPy~C~~--C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSS--SCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCC--CCCcccChHHHHHHccccCC
Confidence            78888888888  88888888888888888753

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.9e-10  Score=60.45  Aligned_cols=32  Identities=28%  Similarity=0.502  Sum_probs=30.3

Q ss_pred             CCCCCccccccccccccchHHHHHHHHhhccc
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +++++||+|.+||+.|...+.|..|+++|+++
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            68999999999999999999999999999874

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.9e-10  Score=63.41  Aligned_cols=32  Identities=28%  Similarity=0.496  Sum_probs=27.8

Q ss_pred             hcCCCcccccCCCCCCceeccchhhhhhhhccCc
Q 048459          278 VHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHH  311 (362)
Q Consensus       278 ~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  311 (362)
                      +|+|++||+|++  |+++|.++++|..|++.+|.
T Consensus         2 ~HTgekP~~C~~--C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           2 THSGEKPYECYI--CHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCSCCCSEECTT--TCCEESCHHHHHHHHHHHSS
T ss_pred             ccCCCCCEeCCC--CcccccchHHHHHHcccccC
Confidence            789999999999  99999999999999876663

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=5.1e-10  Score=60.86  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=30.2

Q ss_pred             CCCCCccccccccccccchHHHHHHHHhhccc
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ++|++||+|.+|++.|..++.|.+|+++|...
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            67999999999999999999999999999875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=4.2e-10  Score=57.76  Aligned_cols=28  Identities=21%  Similarity=0.440  Sum_probs=26.6

Q ss_pred             CCccccccccccccchHHHHHHHHhhcc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHK   49 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~   49 (362)
                      +|||+|.+|++.|...+.|.+|+++|++
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999975

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.87  E-value=6.6e-10  Score=57.79  Aligned_cols=29  Identities=34%  Similarity=0.598  Sum_probs=25.4

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCC
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLER   93 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (362)
                      +||.|++|++.|.....|.+|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            46899999999999999999999998874

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.84  E-value=8.8e-10  Score=57.31  Aligned_cols=28  Identities=25%  Similarity=0.572  Sum_probs=26.9

Q ss_pred             CccccccccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +||.|.+|++.|...+.|.+|+++|+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            6899999999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.2e-09  Score=56.65  Aligned_cols=28  Identities=18%  Similarity=0.476  Sum_probs=26.9

Q ss_pred             CccccccccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      |||.|.+||+.|..++.|.+|+++|+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            6899999999999999999999999986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=7.1e-10  Score=56.90  Aligned_cols=27  Identities=22%  Similarity=0.405  Sum_probs=19.3

Q ss_pred             ccccccccccccCChhHHHHHHHhccC
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLL   91 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (362)
                      +||.|++|++.|.....|.+|+++|+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            567777777777777777777777764

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.4e-09  Score=56.40  Aligned_cols=29  Identities=24%  Similarity=0.519  Sum_probs=25.1

Q ss_pred             ccccccccccccCChhHHHHHHHhccCCC
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLER   93 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (362)
                      ++|.|++|++.|..++.|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            46899999999999999999999998874

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=8.2e-10  Score=60.60  Aligned_cols=32  Identities=41%  Similarity=0.702  Sum_probs=25.1

Q ss_pred             ccccc--cccccCChhHHHHHHHhccCCCCeecc
Q 048459           67 NTCEE--CGASFKKPAYLKQHMLSHLLERPFRCS   98 (362)
Q Consensus        67 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~   98 (362)
                      |.|+.  |+++|..+..|.+|+++|+|++||.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            56765  888888888888888888888888874

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=1.2e-09  Score=57.94  Aligned_cols=29  Identities=31%  Similarity=0.592  Sum_probs=20.0

Q ss_pred             CcccccCCCCCCceeccchhhhhhhhccC
Q 048459          282 IKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       282 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      ++||.|.++||+++|.+.+.|.+|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            46677777777777777777777777664

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.2e-09  Score=57.66  Aligned_cols=31  Identities=23%  Similarity=0.469  Sum_probs=21.2

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIK  283 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  283 (362)
                      +||.|+++.|+++|...+.|.+|++ +|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r-~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHT-TTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcC-cccccC
Confidence            3567766677777777777777776 677664

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.9e-09  Score=59.40  Aligned_cols=34  Identities=32%  Similarity=0.663  Sum_probs=26.5

Q ss_pred             HhccCCCCeecccccccccccChhHHHHHHHHcCCC
Q 048459           87 LSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGK  122 (362)
Q Consensus        87 ~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~  122 (362)
                      ++|+|++||.|..  |+++|...+.|..|+++|++.
T Consensus         1 R~HTgekPy~C~~--C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSS--SSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCC--CCCCcCCHhHHHHhCcccCCC
Confidence            4678888888854  888888888888888888753

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.3e-09  Score=54.34  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=24.8

Q ss_pred             CccccccccccccchHHHHHHHHhhc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      |||+|.+||+.|...+.|.+|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.9e-09  Score=58.57  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             CCCCCCccccccccccccchHHHHHHHHhhccc
Q 048459           18 KSRDVRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      .++|++||.|.+|++.|...+.|..|++.++.+
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            478999999999999999999999999877764

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=2.7e-10  Score=66.90  Aligned_cols=39  Identities=23%  Similarity=0.356  Sum_probs=25.0

Q ss_pred             hHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          270 NLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       270 ~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      .|..|+  .|++++||+|.++||+++|.+++.|..|+++|.
T Consensus         6 ~l~~h~--~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_           6 SIDKYV--KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SGGGSC--EEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             hhcchh--hccCCCCeECCcCCCCccccCchHHHhhccccc
Confidence            344454  366677777766667777777777777766654

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=7.8e-10  Score=61.94  Aligned_cols=37  Identities=35%  Similarity=0.542  Sum_probs=32.5

Q ss_pred             HHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCC
Q 048459          240 RHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEI  282 (362)
Q Consensus       240 ~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  282 (362)
                      .|+++|+++   +||.|  ++||++|...+.|..|++ +|+||
T Consensus         2 rH~~~Ht~e---kpy~C--~~CgK~F~~~s~L~~H~r-~HtGE   38 (38)
T d2cota2           2 RSEWQQRER---RRYKC--DECGKSFSHSSDLSKHRR-THTGE   38 (38)
T ss_dssp             CCCSCCCCS---CSSBC--SSSCCBCSCHHHHHHHHT-TTCCS
T ss_pred             ccCcccCCC---CCEec--CCCCceeeCHHHHHHhCc-cCCCC
Confidence            367788887   67999  779999999999999998 99986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.2e-09  Score=55.73  Aligned_cols=27  Identities=30%  Similarity=0.674  Sum_probs=22.0

Q ss_pred             cccccCCCCCCceeccchhhhhhhhcc
Q 048459          283 KPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       283 ~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      +||.|+.+||||+|.+.++|+.|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            578888888888888888888888776

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=1e-09  Score=60.99  Aligned_cols=34  Identities=35%  Similarity=0.631  Sum_probs=27.0

Q ss_pred             HHHhccCCCCeecccccccccccChhHHHHHHHHcC
Q 048459           85 HMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQ  120 (362)
Q Consensus        85 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~  120 (362)
                      |.++|+|++||.|..  |++.|..++.|..|+++|.
T Consensus         2 h~R~HTgeKPy~C~~--C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTT--TCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCC--CCCEecCHHHHHHHHhcCc
Confidence            567788888888854  8888888888888888774

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.7e-09  Score=55.64  Aligned_cols=30  Identities=37%  Similarity=0.688  Sum_probs=19.7

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCC
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEI  282 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  282 (362)
                      +||.|.++.|+++|.+.+.|.+|++ +|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r-~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLR-SHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHH-HTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcC-cCcCC
Confidence            3566666667777777777777766 66664

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.3e-09  Score=56.01  Aligned_cols=29  Identities=41%  Similarity=0.772  Sum_probs=18.4

Q ss_pred             ceeecccCccccccCchhHHHHHHhhcCCC
Q 048459          253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEI  282 (362)
Q Consensus       253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  282 (362)
                      ||.|.++.|+++|.+.+.|.+|++ +|+||
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r-~HTGE   30 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVR-IHTGD   30 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHH-HHHCC
T ss_pred             CccCCCCCCCceECcHHHcCcccc-ccCCC
Confidence            566665666666666666666666 66654

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=3.2e-09  Score=54.84  Aligned_cols=28  Identities=25%  Similarity=0.510  Sum_probs=22.7

Q ss_pred             cccccCCCCCCceeccchhhhhhhhccC
Q 048459          283 KPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       283 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      |||+|.++||+++|.+.+.|.+|+++|.
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            5788888888888888888888888763

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=1.1e-09  Score=64.31  Aligned_cols=42  Identities=29%  Similarity=0.651  Sum_probs=35.4

Q ss_pred             HHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCc
Q 048459          237 NIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIK  283 (362)
Q Consensus       237 ~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  283 (362)
                      .|..|+. |.++   ++|.|.++.|++.|...+.|..|++ +|+|++
T Consensus         6 ~l~~h~~-h~ge---kpy~C~~~~C~k~F~~~~~L~~H~r-~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPD---KTFECLFPGCTKTFKRRYNIRSHIQ-THLEDR   47 (47)
T ss_dssp             SGGGSCE-EETT---TEEECCCTTCCCEECSSSSHHHHHH-HHTTTC
T ss_pred             hhcchhh-ccCC---CCeECCcCCCCccccCchHHHhhcc-cccCCC
Confidence            4555664 7777   7899977779999999999999998 999985

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.1e-08  Score=53.82  Aligned_cols=30  Identities=27%  Similarity=0.644  Sum_probs=24.0

Q ss_pred             CccccCCCCcchhccCHHHHHhHHhhccCc
Q 048459          162 KQYICQEIGCGKVFKYASKLRQHEDSHVNL  191 (362)
Q Consensus       162 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~  191 (362)
                      +||.|+.++|++.|...+.|..|+++|+++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            478887777888888888888888888775

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.4e-08  Score=52.87  Aligned_cols=28  Identities=25%  Similarity=0.496  Sum_probs=26.4

Q ss_pred             Ccccccc--ccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCDY--CGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~~--C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      |||.|.+  |++.|.+.+.|.+|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899999  999999999999999999874

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.2e-09  Score=51.62  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=17.8

Q ss_pred             cccccCCCCCCceeccchhhhhhhhcc
Q 048459          283 KPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       283 ~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      |||+|..  |||+|.+.+.|..|+++|
T Consensus         1 KPy~C~e--CgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLE--CGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSS--SCCEESSHHHHHHHHHHH
T ss_pred             CCccCCC--CcCeeccCcccccCccCC
Confidence            4677777  777777777777777665

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.6e-08  Score=52.72  Aligned_cols=28  Identities=21%  Similarity=0.516  Sum_probs=26.2

Q ss_pred             Ccccccc--ccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCDY--CGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~~--C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      |||.|.+  |++.|.+.+.|.+|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6899998  999999999999999999874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=1.1e-08  Score=52.80  Aligned_cols=29  Identities=24%  Similarity=0.612  Sum_probs=26.6

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCC
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYE  281 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  281 (362)
                      +||.|.++.|+++|.+.+.|.+|++ +|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r-~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIR-IHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTH-HHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcC-ccCC
Confidence            4799999999999999999999998 8875

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.2e-08  Score=50.97  Aligned_cols=28  Identities=32%  Similarity=0.726  Sum_probs=25.6

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcC
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHY  280 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  280 (362)
                      +||.|+++.|+++|.+.+.|.+|++ .|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r-~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHIL-THA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHH-HHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHh-hcc
Confidence            4799999999999999999999998 775

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=4.7e-08  Score=51.63  Aligned_cols=30  Identities=33%  Similarity=0.564  Sum_probs=27.4

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCC
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEI  282 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  282 (362)
                      +||.|.++.|+++|.+.+.|.+|++ .|+..
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r-~Ht~k   31 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKK-SHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHG-GGTCC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhh-hccCC
Confidence            6899999999999999999999998 89764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.3e-08  Score=48.93  Aligned_cols=28  Identities=32%  Similarity=0.659  Sum_probs=22.2

Q ss_pred             cccccCCCCCCceeccchhhhhhhhccC
Q 048459          283 KPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       283 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      +||.|.++||+++|...++|..|++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            5788888888888888888888888766

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.6e-07  Score=42.86  Aligned_cols=26  Identities=31%  Similarity=0.686  Sum_probs=24.0

Q ss_pred             ccccccccccccchHHHHHHHHhhcc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHK   49 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~   49 (362)
                      |.+|.+|++.|++++.|..|++.|++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            57899999999999999999999874

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=7.6e-07  Score=43.29  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=25.3

Q ss_pred             CCccccccccccccchHHHHHHHHhhc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      ++||.|.+||+.|.+.....+|.+.|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999884

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=7.5e-07  Score=41.76  Aligned_cols=25  Identities=40%  Similarity=0.731  Sum_probs=20.8

Q ss_pred             ccccccccccCChhHHHHHHHhccC
Q 048459           67 NTCEECGASFKKPAYLKQHMLSHLL   91 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~~   91 (362)
                      .+|++|++.|+.+..|..||+.|+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CccchhhhHhcchhHHHHHhhccCC
Confidence            5788888888888888888888875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.2e-06  Score=42.23  Aligned_cols=29  Identities=28%  Similarity=0.575  Sum_probs=27.1

Q ss_pred             CCccccccccccccchHHHHHHHHhhccc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +|||.|++|+..|.+++.+.-|+++|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999999774

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=1.6e-06  Score=42.11  Aligned_cols=26  Identities=46%  Similarity=0.843  Sum_probs=19.9

Q ss_pred             CcccccCCCCCCceeccchhhhhhhhcc
Q 048459          282 IKPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       282 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      ++||.|.+  ||+.|......++|.+.|
T Consensus         1 EkPf~C~~--CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDI--CGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTT--TCCEESSHHHHHHHHGGG
T ss_pred             CCCcccch--hhhhhhcchhhhhhhhhc
Confidence            46778887  888888877777777765

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.1e-06  Score=42.78  Aligned_cols=27  Identities=30%  Similarity=0.699  Sum_probs=23.3

Q ss_pred             cccccCCCCCCceeccchhhhhhh-hcc
Q 048459          283 KPFACSFFGCGMRFAFKHVRDNHE-KSG  309 (362)
Q Consensus       283 ~~~~C~~~~C~~~f~~~~~l~~H~-~~~  309 (362)
                      +||.|.++||.|.|+..++...|+ ++|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            589999999999999999999997 565

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.8e-06  Score=41.44  Aligned_cols=26  Identities=23%  Similarity=0.655  Sum_probs=12.9

Q ss_pred             CeecccccccccccChhHHHHHHHHc
Q 048459           94 PFRCSVDDCHASYRRKDHLTRHLLRH  119 (362)
Q Consensus        94 ~~~C~~~~C~~~f~~~~~l~~H~~~h  119 (362)
                      ||.|.+++|++++...++|+.|++.+
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhh
Confidence            44454445555555555555555443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.9e-06  Score=45.64  Aligned_cols=30  Identities=33%  Similarity=0.635  Sum_probs=25.9

Q ss_pred             CCcccccCCCCCCceeccchhhhhhhhccC
Q 048459          281 EIKPFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       281 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      .++||.|..+||+.+|.+...|..|.+.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            578999999999999999999999987664

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.9e-06  Score=43.47  Aligned_cols=31  Identities=39%  Similarity=0.685  Sum_probs=27.2

Q ss_pred             cccccccccccCChhHHHHHHHhccCCCCee
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHLLERPFR   96 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   96 (362)
                      ...|..||+.|.....|.+|...|++++||.
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            3679999999999999999999999999873

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.87  E-value=2.6e-06  Score=41.14  Aligned_cols=27  Identities=33%  Similarity=0.695  Sum_probs=18.3

Q ss_pred             cccccCCCCCCceeccchhhhhhhhcc
Q 048459          283 KPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       283 ~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      .||+|+..||+++|...+-|++|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            367777777777777777777776643

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.76  E-value=7.1e-06  Score=39.56  Aligned_cols=27  Identities=41%  Similarity=0.824  Sum_probs=18.8

Q ss_pred             CccccCCCCcchhccCHHHHHhHHhhc
Q 048459          162 KQYICQEIGCGKVFKYASKLRQHEDSH  188 (362)
Q Consensus       162 ~~~~C~~~~C~~~f~~~~~l~~H~~~h  188 (362)
                      .||.|+..||++.|...+.|++|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            467777777777777777777776655

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.2e-05  Score=38.56  Aligned_cols=28  Identities=25%  Similarity=0.511  Sum_probs=26.3

Q ss_pred             CCccccccccccccchHHHHHHHHhhcc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHK   49 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~   49 (362)
                      ++||+|+.|.+.-.+.+.|..|++.|++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            5799999999999999999999999986

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.2e-05  Score=40.48  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=27.6

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCCcccc
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFA  286 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~  286 (362)
                      +...|  +.||+.|.....|.+|.. .|++++||.
T Consensus         4 k~~~c--e~cgk~frdvyhlnrhkl-shs~ekpys   35 (35)
T d2epra1           4 KQVAC--EICGKIFRDVYHLNRHKL-SHSGEKPYS   35 (35)
T ss_dssp             CSEEE--TTTTEEESSHHHHHHHGG-GSCSCCCCC
T ss_pred             hhhhH--HHHHHHHHHHHHHHhhhc-ccCCCCCCC
Confidence            45788  779999999999999976 999999983

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.7e-05  Score=38.99  Aligned_cols=27  Identities=30%  Similarity=0.506  Sum_probs=17.0

Q ss_pred             ccccccccccccCChhHHHHHHHhccC
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLL   91 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (362)
                      +||.|++|+..|..+.-+..|.+.|.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            456666666666666666666666654

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=2.4e-05  Score=36.77  Aligned_cols=26  Identities=35%  Similarity=0.572  Sum_probs=23.6

Q ss_pred             cccccccccCChhHHHHHHHhccCCC
Q 048459           68 TCEECGASFKKPAYLKQHMLSHLLER   93 (362)
Q Consensus        68 ~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (362)
                      +|+.|.+.|.++..|+.|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            59999999999999999999999874

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.5e-05  Score=37.50  Aligned_cols=28  Identities=21%  Similarity=0.354  Sum_probs=20.9

Q ss_pred             ccccccccccccCChhHHHHHHHhccCC
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      +||+|..|...-.+.+.|..|++.|+|+
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CcceeeecccccCCchheEEeeecccCc
Confidence            5677777777777777777777777763

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.4e-05  Score=38.85  Aligned_cols=31  Identities=26%  Similarity=0.506  Sum_probs=27.3

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCC
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEI  282 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  282 (362)
                      +||.|.++.|.+.|++.++-.+|+...|..+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            4799999999999999999999986588753

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=3.2e-05  Score=37.28  Aligned_cols=28  Identities=39%  Similarity=0.659  Sum_probs=22.4

Q ss_pred             ccccccccccccCChhHHHHHHHhccCC
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      +.|+|..|...|..+-.|+.||-.|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            4588888888888888888888888764

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=4.7e-05  Score=36.77  Aligned_cols=27  Identities=37%  Similarity=0.794  Sum_probs=25.3

Q ss_pred             ccccccccccccchHHHHHHHHhhccc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      .|.|.+||.....++-|+.|+++|+++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCC
Confidence            489999999999999999999999875

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=3.6e-05  Score=36.76  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=24.3

Q ss_pred             ccccccccccccchHHHHHHHHhhccc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ...|..||+.|...+.|.+|...|+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            367999999999999999999999864

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=4.2e-05  Score=40.87  Aligned_cols=29  Identities=17%  Similarity=0.378  Sum_probs=25.5

Q ss_pred             CCCCccccccccccccchHHHHHHHHhhc
Q 048459           20 RDVRRYYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        20 ~~~k~~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      .|.|||.|..|++.|-.++++.+|.....
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C~   29 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSCT   29 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhhh
Confidence            47899999999999999999999986443

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=6.8e-05  Score=36.21  Aligned_cols=27  Identities=48%  Similarity=0.819  Sum_probs=23.5

Q ss_pred             ccccccccccCChhHHHHHHHhccCCC
Q 048459           67 NTCEECGASFKKPAYLKQHMLSHLLER   93 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (362)
                      |.|+.|+......+.|+.|++.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            789999999999999999999998763

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=5.6e-05  Score=36.69  Aligned_cols=28  Identities=32%  Similarity=0.668  Sum_probs=16.8

Q ss_pred             ceeecccCccccccCchhHHHHHHhhcCCC
Q 048459          253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEI  282 (362)
Q Consensus       253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  282 (362)
                      ||.|.+  |.......++|+.|+++.|..+
T Consensus         2 py~cqy--c~yrsadssnlkthiktkhske   29 (30)
T d1klra_           2 TYQCQY--CEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSS--SSCCCSCSHHHHHHHHHHTSSC
T ss_pred             Cccccc--cccccccchhhhhhhhcccccC
Confidence            466644  6666666666666666666544

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=3.6e-05  Score=41.15  Aligned_cols=27  Identities=33%  Similarity=0.763  Sum_probs=24.5

Q ss_pred             CCCcccccCCCCCCceeccchhhhhhhhc
Q 048459          280 YEIKPFACSFFGCGMRFAFKHVRDNHEKS  308 (362)
Q Consensus       280 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~  308 (362)
                      +|.+||.|.+  |+|.|-++.++.+|...
T Consensus         1 TGiKPYeC~~--C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNI--CAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSS--SCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccc--hhhhhhhHHHHHHhhhh
Confidence            5789999999  99999999999999763

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=7.7e-05  Score=35.44  Aligned_cols=27  Identities=26%  Similarity=0.565  Sum_probs=25.2

Q ss_pred             CCccccccccccccchHHHHHHHHhhc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      .|||+|..|.+.-.+.++|..|++.|.
T Consensus         1 vkp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           1 VKPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCCcccccccchhcchhhHhhhhhccc
Confidence            379999999999999999999999885

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.35  E-value=5.7e-05  Score=34.83  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=22.6

Q ss_pred             cccccccccccchHHHHHHHHhhc
Q 048459           25 YYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      |+|..|.+.|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999885

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00011  Score=38.71  Aligned_cols=29  Identities=31%  Similarity=0.763  Sum_probs=19.5

Q ss_pred             CCCCeecccccccccccChhHHHHHHHHc
Q 048459           91 LERPFRCSVDDCHASYRRKDHLTRHLLRH  119 (362)
Q Consensus        91 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h  119 (362)
                      .++||.|..++|+.+|.+...|..|...|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            35667776667777777777666666655

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.26  E-value=0.00012  Score=39.05  Aligned_cols=30  Identities=20%  Similarity=0.486  Sum_probs=27.3

Q ss_pred             CCccccccccccccchHHHHHHHHhhcccc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHKED   51 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   51 (362)
                      .+.|+|.+|++.|.+-.+|--|++.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            567999999999999999999999997764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0001  Score=35.12  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=18.2

Q ss_pred             eeecccCccccccCchhHHHHHHhhcCCC
Q 048459          254 IKCQFKGCLLSFSTNSNLRQHVKAVHYEI  282 (362)
Q Consensus       254 ~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  282 (362)
                      ..|  .+||+.|...+.|++|.. +|+++
T Consensus         3 hvc--~ecgkaf~essklkrh~l-vhtge   28 (28)
T d1ubdc2           3 HVC--AECGKAFVESSKLKRHQL-VHTGE   28 (28)
T ss_dssp             EEC--TTTCCEESSHHHHHHHGG-GTSCC
T ss_pred             chH--HHHhHHHHHHHHHHHHhh-cccCC
Confidence            456  667777777777777765 77664

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00014  Score=35.20  Aligned_cols=28  Identities=29%  Similarity=0.717  Sum_probs=25.6

Q ss_pred             CccccccccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      |||.|.+|...-.+.++|..|+++-|..
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            6899999999999999999999987764

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.17  E-value=0.00011  Score=35.51  Aligned_cols=28  Identities=25%  Similarity=0.511  Sum_probs=17.0

Q ss_pred             ceeecccCccccccCchhHHHHHHhhcCC
Q 048459          253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYE  281 (362)
Q Consensus       253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  281 (362)
                      ||.|.+..|.+.|.+...|.+|.. .|+|
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~-thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSL-THTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHH-HHHT
T ss_pred             CcCcccccccccchhhhhhhhhhc-cccC
Confidence            466666666666666666666654 5554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.00013  Score=34.16  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=17.7

Q ss_pred             cCccccccCchhHHHHHHhhcCCCc
Q 048459          259 KGCLLSFSTNSNLRQHVKAVHYEIK  283 (362)
Q Consensus       259 ~~C~~~f~~~~~L~~H~~~~H~~~~  283 (362)
                      +.|.+.|.++..|+.|-+ .|+|++
T Consensus         4 p~c~k~f~skyylkvhnr-~htgek   27 (27)
T d2dlqa4           4 PTCHKKFLSKYYLKVHNR-KHTGEK   27 (27)
T ss_dssp             TTTCCCCSSHHHHHHHHH-HHSSCC
T ss_pred             cchHHHHHHhHhhhhccc-cccCCC
Confidence            667777777777777776 777764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=9.8e-05  Score=35.63  Aligned_cols=24  Identities=33%  Similarity=0.753  Sum_probs=20.0

Q ss_pred             ccccCCCCCCceeccchhhhhhhhcc
Q 048459          284 PFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       284 ~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      ||.|..  |..+|.++.+|..||++.
T Consensus         1 py~C~~--CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTY--CNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSS--SSCEESSHHHHHHHHHSS
T ss_pred             Ccccce--eeeeEeeccchhHhhhhh
Confidence            688888  888888888888888853

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.11  E-value=9.3e-05  Score=35.76  Aligned_cols=29  Identities=34%  Similarity=0.649  Sum_probs=21.4

Q ss_pred             CccccCCCCcchhccCHHHHHhHHhhccC
Q 048459          162 KQYICQEIGCGKVFKYASKLRQHEDSHVN  190 (362)
Q Consensus       162 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  190 (362)
                      +||.|...||.+.|.+...|.+|...|++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CCcCcccccccccchhhhhhhhhhccccC
Confidence            36777777777777777777777777765

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.03  E-value=0.00022  Score=37.95  Aligned_cols=28  Identities=29%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             ccccccccccccCChhHHHHHHHhccCC
Q 048459           65 QCNTCEECGASFKKPAYLKQHMLSHLLE   92 (362)
Q Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (362)
                      +.|.|..|++.|.+..+|--||+.|..+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CccCCCCCCCccCCcccccchHhhhcch
Confidence            3477888888888888888887777544

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.0003  Score=33.79  Aligned_cols=29  Identities=21%  Similarity=0.395  Sum_probs=26.1

Q ss_pred             CCccccccccccccchHHHHHHHHhhccc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +..|.|..|...|.++-.|+.||.+|+++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            34699999999999999999999999874

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0002  Score=34.49  Aligned_cols=24  Identities=29%  Similarity=0.654  Sum_probs=22.4

Q ss_pred             ccccccccccccchHHHHHHHHhh
Q 048459           24 RYYCDYCGICRSKKSLILSHIASH   47 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h   47 (362)
                      ||.|..|+..|.++..|..||++-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            699999999999999999999864

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.96  E-value=0.00021  Score=35.41  Aligned_cols=26  Identities=23%  Similarity=0.616  Sum_probs=23.5

Q ss_pred             ccccccccccccchHHHHHHHHhhcc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHK   49 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~   49 (362)
                      ||.|.+|++.|.+++.|.+|++.-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            79999999999999999999986554

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0002  Score=33.97  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=17.9

Q ss_pred             cccccCCCCCCceeccchhhhhhhhcc
Q 048459          283 KPFACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       283 ~~~~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      +||+|..  |.+.-...++|..|+++|
T Consensus         2 kp~kck~--cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKT--CDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSS--SCCEESSHHHHHHHHHHS
T ss_pred             CCccccc--ccchhcchhhHhhhhhcc
Confidence            5677777  777777777777777765

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.75  E-value=0.00034  Score=34.37  Aligned_cols=30  Identities=27%  Similarity=0.534  Sum_probs=25.5

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCC
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEI  282 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  282 (362)
                      +.|.|.|+.|+..|.....|..|+- .|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLc-kHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLS-KHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHH-HHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhh-hhcCC
Confidence            4688999999999999999999986 88775

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.74  E-value=0.00045  Score=31.77  Aligned_cols=16  Identities=38%  Similarity=0.621  Sum_probs=8.4

Q ss_pred             ccccccCchhHHHHHH
Q 048459          261 CLLSFSTNSNLRQHVK  276 (362)
Q Consensus       261 C~~~f~~~~~L~~H~~  276 (362)
                      |.++|..++.|.+|++
T Consensus         6 cersfveksalsrhqr   21 (26)
T d1znfa_           6 CERSFVEKSALSRHQR   21 (26)
T ss_dssp             SCCBCSSHHHHHHHGG
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            5555555555555544

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00027  Score=36.43  Aligned_cols=29  Identities=24%  Similarity=0.493  Sum_probs=23.3

Q ss_pred             ceeecccCccc---cccCchhHHHHHHhhcCCC
Q 048459          253 RIKCQFKGCLL---SFSTNSNLRQHVKAVHYEI  282 (362)
Q Consensus       253 ~~~C~~~~C~~---~f~~~~~L~~H~~~~H~~~  282 (362)
                      .|.|.|..|.+   .|.....|..||+ +|+|+
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R-~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMR-RHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTH-HHHCC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHh-hcCCC
Confidence            47888888875   4888889999998 88875

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0007  Score=32.69  Aligned_cols=28  Identities=25%  Similarity=0.649  Sum_probs=25.3

Q ss_pred             CccccccccccccchHHHHHHHHhhccc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      +||+|.+|.......++|..|++..|+.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            5899999999999999999999987763

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.57  E-value=0.00074  Score=33.43  Aligned_cols=22  Identities=23%  Similarity=0.721  Sum_probs=11.2

Q ss_pred             ccccCCCCCCceeccchhhhhhhh
Q 048459          284 PFACSFFGCGMRFAFKHVRDNHEK  307 (362)
Q Consensus       284 ~~~C~~~~C~~~f~~~~~l~~H~~  307 (362)
                      ||.|.+  |++.|..+..|.+|.+
T Consensus         1 Pf~C~~--C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGL--CNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTT--TCCEESSHHHHHHHHT
T ss_pred             Cccccc--ccchhhHHHHHHHHHH
Confidence            345555  5555555555555544

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0015  Score=31.31  Aligned_cols=25  Identities=40%  Similarity=0.693  Sum_probs=17.2

Q ss_pred             eecccCccccccCchhHHHHHHhhc
Q 048459          255 KCQFKGCLLSFSTNSNLRQHVKAVH  279 (362)
Q Consensus       255 ~C~~~~C~~~f~~~~~L~~H~~~~H  279 (362)
                      .|.++.|++.|++...|..|.+-.|
T Consensus         2 ~cdf~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           2 PCDFPGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHHHGG
T ss_pred             CCCCCCchhhhccHHHHHhHHHHHH
Confidence            4666777777777777777766444

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.00064  Score=32.84  Aligned_cols=25  Identities=36%  Similarity=0.764  Sum_probs=11.8

Q ss_pred             ceeecccCccccccCchhHHHHHHhhc
Q 048459          253 RIKCQFKGCLLSFSTNSNLRQHVKAVH  279 (362)
Q Consensus       253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H  279 (362)
                      ||+|.+  |..-..+.++|..|++..|
T Consensus         2 PFkC~~--CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           2 PFKCNY--CSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             SEECSS--SSCEESSHHHHHHHHHHHH
T ss_pred             Ccccce--ecccccCcchHHHHHHHHc
Confidence            345533  5555555555555554333

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0013  Score=33.87  Aligned_cols=29  Identities=28%  Similarity=0.522  Sum_probs=20.4

Q ss_pred             ccccCCCCcch---hccCHHHHHhHHhhccCc
Q 048459          163 QYICQEIGCGK---VFKYASKLRQHEDSHVNL  191 (362)
Q Consensus       163 ~~~C~~~~C~~---~f~~~~~l~~H~~~h~~~  191 (362)
                      .|.|...||.+   .|.....|..|++.|+++
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            46677777754   477777888888877763

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0027  Score=29.92  Aligned_cols=23  Identities=35%  Similarity=0.706  Sum_probs=21.0

Q ss_pred             ccccccccccccchHHHHHHHHh
Q 048459           24 RYYCDYCGICRSKKSLILSHIAS   46 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~   46 (362)
                      ||+|..||+.|.++..|.+|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            69999999999999999999754

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.0028  Score=29.06  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=22.0

Q ss_pred             CccccccccccccchHHHHHHHHh
Q 048459           23 RRYYCDYCGICRSKKSLILSHIAS   46 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~   46 (362)
                      .||+|..|...|-.+..|+.|+..
T Consensus         1 mpykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHh
Confidence            489999999999999999999864

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0018  Score=29.68  Aligned_cols=22  Identities=32%  Similarity=0.632  Sum_probs=13.0

Q ss_pred             ccccCCCCCCceeccchhhhhhhh
Q 048459          284 PFACSFFGCGMRFAFKHVRDNHEK  307 (362)
Q Consensus       284 ~~~C~~~~C~~~f~~~~~l~~H~~  307 (362)
                      ||+|..  |...|-++.+|..||-
T Consensus         2 pykcss--csqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSS--CSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSS--SCCEESSHHHHHHHHH
T ss_pred             CCcccH--HHHHHHHHHHHHHHHH
Confidence            456665  6666666666666553

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.82  E-value=0.0034  Score=28.89  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=21.6

Q ss_pred             cccccccccccchHHHHHHHHhhc
Q 048459           25 YYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        25 ~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      |.|++|-+.|.+++.+..|.+.-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            899999999999999999987543

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0039  Score=29.65  Aligned_cols=24  Identities=38%  Similarity=0.821  Sum_probs=17.4

Q ss_pred             ccCCCCcchhccCHHHHHhHHhhc
Q 048459          165 ICQEIGCGKVFKYASKLRQHEDSH  188 (362)
Q Consensus       165 ~C~~~~C~~~f~~~~~l~~H~~~h  188 (362)
                      .|+..||++.|...+.++.|+-+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            466667777777777777777665

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0043  Score=29.40  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=19.1

Q ss_pred             ccccccccccCChhHHHHHHHhcc
Q 048459           67 NTCEECGASFKKPAYLKQHMLSHL   90 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~   90 (362)
                      -+|+.|..+.+++..|+.|.+.|-
T Consensus         3 ekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGC
T ss_pred             ccCcccccccCcHHHHHHhhcccc
Confidence            468888888888888888888774

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.50  E-value=0.0031  Score=30.86  Aligned_cols=29  Identities=34%  Similarity=0.693  Sum_probs=23.0

Q ss_pred             CccccCCCCcchhccCHHHHHhHHhhccC
Q 048459          162 KQYICQEIGCGKVFKYASKLRQHEDSHVN  190 (362)
Q Consensus       162 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  190 (362)
                      +.|.|..++|+..|.....|..|+-.|+|
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcC
Confidence            45778888888888888888888887776

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.006  Score=33.66  Aligned_cols=29  Identities=21%  Similarity=0.321  Sum_probs=25.6

Q ss_pred             CCccccccccccccchHHHHHHHHhhccc
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      .-.|.|..|+|.|.....|+.|...|-..
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQHG~t   32 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQHGVT   32 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             cceeeccccccccCCHHHHhHhHHhcCcc
Confidence            34699999999999999999999988764

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.44  E-value=0.0053  Score=28.24  Aligned_cols=24  Identities=33%  Similarity=0.732  Sum_probs=16.2

Q ss_pred             eeecccCccccccCchhHHHHHHhhc
Q 048459          254 IKCQFKGCLLSFSTNSNLRQHVKAVH  279 (362)
Q Consensus       254 ~~C~~~~C~~~f~~~~~L~~H~~~~H  279 (362)
                      |.|  +.|-+.|..+.++..|++.+|
T Consensus         2 ypc--p~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPC--PFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EEC--TTTCCEESCHHHHHHHHHHHT
T ss_pred             cCC--chhhHHhccccCceEEEEEec
Confidence            566  447777777777777776555

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.33  E-value=0.0033  Score=29.46  Aligned_cols=24  Identities=29%  Similarity=0.589  Sum_probs=11.5

Q ss_pred             cccCCCCCCceeccchhhhhhhhc
Q 048459          285 FACSFFGCGMRFAFKHVRDNHEKS  308 (362)
Q Consensus       285 ~~C~~~~C~~~f~~~~~l~~H~~~  308 (362)
                      |.|...+|++.|+....|+.|+-+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~   25 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFS   25 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeec
Confidence            344444455555555555554433

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.18  E-value=0.0053  Score=28.75  Aligned_cols=26  Identities=27%  Similarity=0.571  Sum_probs=22.7

Q ss_pred             eeecccCccccccCchhHHHHHHhhcC
Q 048459          254 IKCQFKGCLLSFSTNSNLRQHVKAVHY  280 (362)
Q Consensus       254 ~~C~~~~C~~~f~~~~~L~~H~~~~H~  280 (362)
                      |.|.+..|++.|..-..|+.|+- .|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf-~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQF-SHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHH-HHH
T ss_pred             eEEEecCchHHHhhccceEEEee-ccc
Confidence            78999999999999999999986 554

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.11  E-value=0.0046  Score=29.07  Aligned_cols=23  Identities=35%  Similarity=0.615  Sum_probs=19.2

Q ss_pred             ccccCCCCCCceeccchhhhhhhhc
Q 048459          284 PFACSFFGCGMRFAFKHVRDNHEKS  308 (362)
Q Consensus       284 ~~~C~~~~C~~~f~~~~~l~~H~~~  308 (362)
                      ||+|..  ||+.|-.+.+|..|...
T Consensus         1 pf~c~k--cgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPK--CGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTT--TCCBCSSHHHHHHHHHH
T ss_pred             CCcccc--chhhhhhHhHHHHHHHH
Confidence            688888  99999999999888753

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0096  Score=28.18  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=23.4

Q ss_pred             ccccccccccccchHHHHHHHHhhcc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHK   49 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~   49 (362)
                      |-+|..|.+..+++..|+.|.+.|..
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            56899999999999999999998854

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0067  Score=28.84  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=15.9

Q ss_pred             ccCCCCCCceeccchhhhhhhhcc
Q 048459          286 ACSFFGCGMRFAFKHVRDNHEKSG  309 (362)
Q Consensus       286 ~C~~~~C~~~f~~~~~l~~H~~~~  309 (362)
                      .|+..||+|.|...+.+..|+.+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            355566777777777777776664

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0088  Score=30.15  Aligned_cols=28  Identities=18%  Similarity=0.477  Sum_probs=25.1

Q ss_pred             ccccccccccccchHHHHHHHHhhcccc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHKED   51 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~   51 (362)
                      .|.|..||+.|.++..+.+|.....+.+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~d   31 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGPD   31 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCCC
Confidence            5899999999999999999998877754

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0065  Score=29.04  Aligned_cols=22  Identities=36%  Similarity=0.841  Sum_probs=19.8

Q ss_pred             ccCCCCCCceeccchhhhhhhh
Q 048459          286 ACSFFGCGMRFAFKHVRDNHEK  307 (362)
Q Consensus       286 ~C~~~~C~~~f~~~~~l~~H~~  307 (362)
                      .|..+|||+.|+++..|.-|.+
T Consensus         2 ~cdf~gc~kifsnrqylnhh~k   23 (30)
T d2dlka1           2 PCDFPGCGRIFSNRQYLNHHKK   23 (30)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHH
T ss_pred             CCCCCCchhhhccHHHHHhHHH
Confidence            5888999999999999988877

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.01  Score=32.74  Aligned_cols=25  Identities=32%  Similarity=0.539  Sum_probs=21.4

Q ss_pred             cccccccccccCChhHHHHHHHhcc
Q 048459           66 CNTCEECGASFKKPAYLKQHMLSHL   90 (362)
Q Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~   90 (362)
                      .|.|..|+|.|.....|+.|...|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            3889999999999999999988774

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.62  E-value=0.016  Score=27.78  Aligned_cols=27  Identities=33%  Similarity=0.808  Sum_probs=18.0

Q ss_pred             ceeecccCccccccCchhHHHHHHhhc
Q 048459          253 RIKCQFKGCLLSFSTNSNLRQHVKAVH  279 (362)
Q Consensus       253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H  279 (362)
                      .|+|.-+.|...|.++.+++.|....|
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhc
Confidence            366666667777777777777766555

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.021  Score=26.89  Aligned_cols=24  Identities=25%  Similarity=0.549  Sum_probs=13.2

Q ss_pred             eeecccCccccccCchhHHHHHHhhc
Q 048459          254 IKCQFKGCLLSFSTNSNLRQHVKAVH  279 (362)
Q Consensus       254 ~~C~~~~C~~~f~~~~~L~~H~~~~H  279 (362)
                      |.|  +.|+-....+++|..|++..|
T Consensus         3 ~qc--phc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHC--PHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EEC--SSSSCEESSHHHHHHHHHHTS
T ss_pred             ccC--CcchhheeehhhhhHHhhhcc
Confidence            455  445555555555555555444

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.05  E-value=0.016  Score=28.85  Aligned_cols=24  Identities=38%  Similarity=0.573  Sum_probs=21.4

Q ss_pred             CCccccccccccccchHHHHHHHH
Q 048459           22 VRRYYCDYCGICRSKKSLILSHIA   45 (362)
Q Consensus        22 ~k~~~C~~C~~~f~~~~~l~~H~~   45 (362)
                      .-.|.|.-||..|++.+.|..|+.
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            446999999999999999999975

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.023  Score=26.75  Aligned_cols=25  Identities=24%  Similarity=0.546  Sum_probs=22.6

Q ss_pred             ccccccccccccchHHHHHHHHhhc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHH   48 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~   48 (362)
                      .|.|+.|+....+++.|..|++.-|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            4899999999999999999998654

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.011  Score=36.35  Aligned_cols=28  Identities=14%  Similarity=0.072  Sum_probs=24.5

Q ss_pred             CCCCCccccccccccccchHHHHHHHHh
Q 048459           19 SRDVRRYYCDYCGICRSKKSLILSHIAS   46 (362)
Q Consensus        19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~   46 (362)
                      ..|...|-|..|++.|.+...|..|+++
T Consensus        10 ~pG~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          10 LPGGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCCCEEecccccCccCCHHHHHHHHcc
Confidence            3366779999999999999999999874

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.62  E-value=0.019  Score=27.52  Aligned_cols=29  Identities=34%  Similarity=0.577  Sum_probs=24.9

Q ss_pred             cccccCCCCCCceeccchhhhhhhhccCc
Q 048459          283 KPFACSFFGCGMRFAFKHVRDNHEKSGHH  311 (362)
Q Consensus       283 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~  311 (362)
                      +.|.|...+|+..|.++.+++.|...-|+
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CCccccCCCcceEEeehHHHHHHHhhhcc
Confidence            35889988999999999999999876554

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.038  Score=27.52  Aligned_cols=26  Identities=27%  Similarity=0.774  Sum_probs=22.4

Q ss_pred             eecccCccccccCchhHHHHHHhhcC
Q 048459          255 KCQFKGCLLSFSTNSNLRQHVKAVHY  280 (362)
Q Consensus       255 ~C~~~~C~~~f~~~~~L~~H~~~~H~  280 (362)
                      .|.|..|+..|.+...|..|+..-|.
T Consensus         3 nChW~~C~~eFdtQd~LV~HinndHI   28 (32)
T d2glia1           3 DCRWDGCSQEFDSQEQLVHHINSEHI   28 (32)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTS
T ss_pred             cccccccccccCCHHHHHHHcccccc
Confidence            47788999999999999999987664

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.62  E-value=0.086  Score=28.80  Aligned_cols=28  Identities=25%  Similarity=0.421  Sum_probs=22.8

Q ss_pred             CCCccccccccccccCChhHHHHHHHhc
Q 048459           62 KGVQCNTCEECGASFKKPAYLKQHMLSH   89 (362)
Q Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h   89 (362)
                      ..+++-+|++|+.+.....+|++|+..-
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel~   47 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLELR   47 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            4567788999999999889999998753

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.042  Score=27.60  Aligned_cols=25  Identities=20%  Similarity=0.466  Sum_probs=21.7

Q ss_pred             ccccccccccCChhHHHHHHHhccC
Q 048459           67 NTCEECGASFKKPAYLKQHMLSHLL   91 (362)
Q Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~~   91 (362)
                      |.|..|++.|..+..+.+|-..-.|
T Consensus         5 fvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeecccccchhcchHHHHHhhhcCC
Confidence            8899999999999999999876554

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.12  Score=24.66  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=15.9

Q ss_pred             cccCCcCccCCCHHHHHHHHhhhCC
Q 048459          198 CSEPGCMKYFTNKQCLEAHIRSCHQ  222 (362)
Q Consensus       198 ~~C~~C~~~f~~~~~l~~H~~~~h~  222 (362)
                      |.|..|++.+.+...+..|+...|.
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             eechhHHHHHhhccCceEEEeeccc
Confidence            4566666666666666666665443

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.026  Score=33.89  Aligned_cols=42  Identities=12%  Similarity=0.212  Sum_probs=29.2

Q ss_pred             CCCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccccccccc
Q 048459           18 KSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASF   76 (362)
Q Consensus        18 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f   76 (362)
                      .......|.|+.|++.|+....+.- +-.-.+                .|.|..|+-..
T Consensus         8 d~~~~~~y~Cp~C~~~ys~Lda~~L-~d~~~~----------------~F~C~~C~~el   49 (62)
T d1vd4a_           8 DSTNRASFKCPVCSSTFTDLEANQL-FDPMTG----------------TFRCTFCHTEV   49 (62)
T ss_dssp             SCCSSSEEECSSSCCEEEHHHHHHH-EETTTT----------------EEBCSSSCCBC
T ss_pred             ccccCCceECCCCCCCcchhhHHHh-cCcCCC----------------eEEecCCCCEE
Confidence            4456778999999999998776644 212222                28999997643

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.085  Score=29.57  Aligned_cols=35  Identities=29%  Similarity=0.498  Sum_probs=28.7

Q ss_pred             CCCCceeecccCccccccCchhHHHHHHhhcCCCc
Q 048459          249 DLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIK  283 (362)
Q Consensus       249 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  283 (362)
                      .+++||.|.-..|...|.-..+|..|.+.+|...-
T Consensus        16 spyrpyrcvhqgc~aaftiq~nlilhy~avh~s~l   50 (61)
T d1x3ca1          16 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDL   50 (61)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCC
T ss_pred             CCCCceeeeccchhhhhhhhhhHHHHHHHHhhhcC
Confidence            34678899888899999999999999988886653

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.09  Score=25.07  Aligned_cols=27  Identities=19%  Similarity=0.412  Sum_probs=23.7

Q ss_pred             ccccccccccccchHHHHHHHHhhccc
Q 048459           24 RYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        24 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      .|.|..||+...+...++-|+...|..
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn~   28 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHNS   28 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             ceechhHHHHHhhccCceEEEeecccC
Confidence            589999999999999999998876653

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.11  Score=30.59  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=31.1

Q ss_pred             cCCCCCCCCCccccccccccccchHHHHHHHHhhccc
Q 048459           14 EERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        14 ~~~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ...+...+...|.|..|...|.+...|..|+..|..+
T Consensus         8 l~~~~~~~s~~yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1           8 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             cCCCcccCCceeeechhHHHHhhHHHHHHHHHhccHH
Confidence            3445556777899999999999999999999998764

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.68  E-value=0.088  Score=26.50  Aligned_cols=30  Identities=23%  Similarity=0.423  Sum_probs=25.8

Q ss_pred             CCCccccccccccccchHHHHHHHHhhccc
Q 048459           21 DVRRYYCDYCGICRSKKSLILSHIASHHKE   50 (362)
Q Consensus        21 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   50 (362)
                      ++..|.|.+|.+.|...+.+-+|..+.|..
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk~   34 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHKR   34 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhccc
Confidence            456799999999999999999998876653

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.38  E-value=0.084  Score=26.19  Aligned_cols=21  Identities=29%  Similarity=0.697  Sum_probs=10.8

Q ss_pred             cccCCCCCCceeccchhhhhhhh
Q 048459          285 FACSFFGCGMRFAFKHVRDNHEK  307 (362)
Q Consensus       285 ~~C~~~~C~~~f~~~~~l~~H~~  307 (362)
                      |.|.-  ||-.|++.+.|..|+.
T Consensus         9 f~c~p--cgirfss~stleahqt   29 (36)
T d1y0jb1           9 FMCLP--CGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CBCTT--TCCBCSCHHHHHHHTT
T ss_pred             eeccc--cceeecChhHHHhhhh
Confidence            45554  5555555555555543

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.37  E-value=0.14  Score=26.05  Aligned_cols=29  Identities=21%  Similarity=0.564  Sum_probs=24.5

Q ss_pred             CceeecccCccccccCchhHHHHHHhhcCCC
Q 048459          252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEI  282 (362)
Q Consensus       252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~  282 (362)
                      +...|  -+|-+.|.+..++.+|+..+|...
T Consensus         2 kkltc--lecmrtfkssfsiwrhqvevhnqn   30 (41)
T d1wjpa3           2 KKLTC--LECMRTFKSSFSIWRHQVEVHNQN   30 (41)
T ss_dssp             GGGEE--GGGTEECSSHHHHHHHHHHTSCCC
T ss_pred             CcccH--HHHHHHHHHHHHHHHhhheecccc
Confidence            45788  789999999999999998888654

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.22  E-value=0.07  Score=32.57  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=20.1

Q ss_pred             CccccccccccccCChhHHHHHHH
Q 048459           64 VQCNTCEECGASFKKPAYLKQHML   87 (362)
Q Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~   87 (362)
                      .-.|.|..|++.|.+...|..|++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCEEecccccCccCCHHHHHHHHc
Confidence            344889999999999999999975

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=87.82  E-value=0.096  Score=26.37  Aligned_cols=25  Identities=16%  Similarity=0.388  Sum_probs=13.6

Q ss_pred             ccccCCCCCCceeccchhhhhhhhccC
Q 048459          284 PFACSFFGCGMRFAFKHVRDNHEKSGH  310 (362)
Q Consensus       284 ~~~C~~~~C~~~f~~~~~l~~H~~~~h  310 (362)
                      .|.|.+  |.+.+...+++-+|.-+.|
T Consensus         8 ~yRC~~--C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           8 TYRCKV--CSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             EEECTT--TCCEESSHHHHHHHHHHHS
T ss_pred             EEEeeh--hhHHHHHHHHHHHHHHhhc
Confidence            455555  5555555555555554433

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.71  E-value=0.24  Score=24.57  Aligned_cols=24  Identities=29%  Similarity=0.725  Sum_probs=14.8

Q ss_pred             CCccCCchhccChhHHHHHHHHhc
Q 048459          126 CPIENCNREFTIQGNMKRHVKELH  149 (362)
Q Consensus       126 C~~~~C~~~f~~~~~l~~H~~~~h  149 (362)
                      |.+.+|+..|.+...|..|+..-|
T Consensus         4 ChW~~C~~eFdtQd~LV~HinndH   27 (32)
T d2glia1           4 CRWDGCSQEFDSQEQLVHHINSEH   27 (32)
T ss_dssp             CCBTTCCCBCSCHHHHHHHHHHHT
T ss_pred             ccccccccccCCHHHHHHHccccc
Confidence            445566666666666666665554

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=86.11  E-value=0.19  Score=27.78  Aligned_cols=15  Identities=27%  Similarity=0.791  Sum_probs=12.5

Q ss_pred             Cccccccccccccch
Q 048459           23 RRYYCDYCGICRSKK   37 (362)
Q Consensus        23 k~~~C~~C~~~f~~~   37 (362)
                      +.|.|.+||..|...
T Consensus         2 ~~y~C~~CgyiYd~~   16 (45)
T d6rxna_           2 QKYVCNVCGYEYDPA   16 (45)
T ss_dssp             CCEEETTTCCEECGG
T ss_pred             CCeEeCCCCeEECcc
Confidence            469999999999764

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.32  E-value=0.85  Score=24.73  Aligned_cols=30  Identities=20%  Similarity=0.357  Sum_probs=22.9

Q ss_pred             CCCCccccCCCCcchhccCHHHHHhHHhhccC
Q 048459          159 GDQKQYICQEIGCGKVFKYASKLRQHEDSHVN  190 (362)
Q Consensus       159 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~  190 (362)
                      ..+.|-.|++  |+.+.....+|++|+..-+-
T Consensus        20 ~s~qpatcpi--c~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          20 QSEQPATCPI--CYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             TTSCCEECTT--TCCEESSHHHHHHHHHHHTS
T ss_pred             cccCCCCCch--HHHHHHHHHHHHHHHHHHhh
Confidence            3557788888  88888888888888866443

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.78  E-value=0.38  Score=24.35  Aligned_cols=29  Identities=17%  Similarity=0.252  Sum_probs=24.8

Q ss_pred             CccccccccccccchHHHHHHHHhhcccc
Q 048459           23 RRYYCDYCGICRSKKSLILSHIASHHKED   51 (362)
Q Consensus        23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   51 (362)
                      +...|-.|-+.|.+..++.+|+...|...
T Consensus         2 kkltclecmrtfkssfsiwrhqvevhnqn   30 (41)
T d1wjpa3           2 KKLTCLECMRTFKSSFSIWRHQVEVHNQN   30 (41)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHHHTSCCC
T ss_pred             CcccHHHHHHHHHHHHHHHHhhheecccc
Confidence            45789999999999999999998766653

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.99  E-value=0.55  Score=27.56  Aligned_cols=28  Identities=21%  Similarity=0.426  Sum_probs=20.4

Q ss_pred             CCccccccccccccCChhHHHHHHHhcc
Q 048459           63 GVQCNTCEECGASFKKPAYLKQHMLSHL   90 (362)
Q Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~   90 (362)
                      +...|.|..|...|.+...|..|+..|.
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhcc
Confidence            3455778888888888777877777664