Citrus Sinensis ID: 048650

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVTTNRPSLYRPFTWAEYKATAYSLSLGDNRLDLFINCKDDDHKKLLD
cHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccEEEEEEcccccccccccccccccccccccEEEEEEcccccEEEEcccccEEEEccccccEEEEcccEEEEEEccccccEEEEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHcccccccHHHHHcccccccccccc
cHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccEEEEcccccccccccHEccccccccccEEEEEEccccccEEEEEcccEEEEccccccEEEEEEccHHHEHccccEcEEEEEEEEEcccccEEEEEEcccccccEEcccHHHcccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccc
MNNYIRAVRELACEILDLMAeglwvrdpsyfsKMIRdvendsffrinhypsccnnnttrvgfgehsdpqILTILRsndvgglqispdhgvwipvapdsaaFCVNVGDVLQAMTNGRFVSVRHRAlsyssqsrmsmayfgapalqarvsappemvttnrpslyrpftwaeYKATAYSLslgdnrldlfinckdddhkklld
MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVTTNRPSLYRPFTWAEYKATAYSLSLGDNRLDLFINCKDDDHKKLLD
MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVTTNRPSLYRPFTWAEYKATAYSLSLGDNRLDLFINCKDDDHKKLLD
***YIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRHRALSY*******MAYFGAPAL************TNRPSLYRPFTWAEYKATAYSLSLGDNRLDLFINCK*********
*NNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVT*NRPSLYRPFTWAEYKATAYSLSLGDNRLDLF*************
MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVTTNRPSLYRPFTWAEYKATAYSLSLGDNRLDLFINCKDDDHKKLLD
MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVTTNRPSLYRPFTWAEYKATAYSLSLGDNRLDLFINCKDDDH*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVTTNRPSLYRPFTWAEYKATAYSLSLGDNRLDLFINCKDDDHKKLLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query200 2.2.26 [Sep-21-2011]
Q9XHM5345 Gibberellin 2-beta-dioxyg N/A no 0.97 0.562 0.579 3e-65
Q9XG83332 Gibberellin 2-beta-dioxyg N/A no 0.935 0.563 0.489 1e-50
Q9SQ80327 Gibberellin 2-beta-dioxyg N/A no 0.915 0.559 0.502 2e-50
Q9XFR9341 Gibberellin 2-beta-dioxyg no no 0.995 0.583 0.442 2e-48
Q8LEA2329 Gibberellin 2-beta-dioxyg no no 0.935 0.568 0.435 4e-45
O64692335 Gibberellin 2-beta-dioxyg no no 0.935 0.558 0.414 6e-42
Q39112380 Gibberellin 20 oxidase 3 no no 0.895 0.471 0.361 3e-24
Q39111378 Gibberellin 20 oxidase 2 no no 0.9 0.476 0.369 5e-24
O04706365 Gibberellin 20 oxidase 1- N/A no 0.795 0.435 0.371 2e-23
O04707365 Gibberellin 20 oxidase 1- N/A no 0.795 0.435 0.371 2e-23
>sp|Q9XHM5|G2OX2_PEA Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1 Back     alignment and function desciption
 Score =  247 bits (631), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/207 (57%), Positives = 145/207 (70%), Gaps = 13/207 (6%)

Query: 1   MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYP---------- 50
           +N+YI+AV++L CEIL+L AEGLWV D S  SK+I+D  +DS  RINHYP          
Sbjct: 132 VNDYIKAVKDLTCEILELAAEGLWVPDKSSLSKIIKDEHSDSLLRINHYPPVKKLGNDNW 191

Query: 51  ---SCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGD 107
                 N+N   +GFGEHSDPQILTILRSN+VGGLQIS  HG+WIPV PD + F V VGD
Sbjct: 192 DPSKIQNSNNNNIGFGEHSDPQILTILRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGD 251

Query: 108 VLQAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVTTNRPSLYRPFTW 167
            LQ +TNGRFVSVRHR L+ +++ RMSM YF AP L   +S   +MVT + P LYRPFTW
Sbjct: 252 ALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMVTAHSPCLYRPFTW 311

Query: 168 AEYKATAYSLSLGDNRLDLFINCKDDD 194
           A+YK  AY+L LGD RLD F   K +D
Sbjct: 312 AQYKQAAYALRLGDTRLDQFKVQKQED 338
Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level. Catabolism of gibberellins (GAs) plays a central role in plant development. Converts GA9/GA20 to GA51/GA29 and GA4/GA1 to GA34/GA8.
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 3
>sp|Q9XG83|G2OX_PHACN Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQ80|G2OX1_PEA Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1 Back     alignment and function description
>sp|Q9XFR9|G2OX2_ARATH Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1 Back     alignment and function description
>sp|Q8LEA2|G2OX1_ARATH Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2 Back     alignment and function description
>sp|O64692|G2OX3_ARATH Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1 Back     alignment and function description
>sp|Q39112|GAOX3_ARATH Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1 Back     alignment and function description
>sp|Q39111|GAOX2_ARATH Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
37544101 335 gibberellin 2-oxidase [Populus alba x Po 0.925 0.552 0.683 1e-73
255556484 346 gibberellin 2-oxidase, putative [Ricinus 0.935 0.540 0.661 3e-72
224108798 306 gibberellin 2-oxidase [Populus trichocar 0.94 0.614 0.668 4e-72
225432055 339 PREDICTED: gibberellin 2-beta-dioxygenas 0.985 0.581 0.619 4e-71
380448150 339 gibberellin 2-beta-dioxygenase 4 [Vitis 0.985 0.581 0.619 9e-71
224101511 322 gibberellin 2-oxidase [Populus trichocar 0.91 0.565 0.666 3e-70
340796367 320 GA2ox6 [Gossypium hirsutum] 0.945 0.590 0.670 6e-70
67077818 323 gibberellin 2-oxidase [Vigna angularis] 0.955 0.591 0.659 9e-69
357448799 322 Gibberellin 2-oxidase [Medicago truncatu 0.935 0.580 0.683 2e-68
356564662 329 PREDICTED: gibberellin 2-beta-dioxygenas 0.945 0.574 0.644 4e-68
>gi|37544101|gb|AAQ93035.1| gibberellin 2-oxidase [Populus alba x Populus tremuloides] Back     alignment and taxonomy information
 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/199 (68%), Positives = 160/199 (80%), Gaps = 14/199 (7%)

Query: 1   MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYP---------- 50
           M+ YI AVRELACE+LDLMAEGLWV D S FS++IRD ++DS  R+NHYP          
Sbjct: 130 MSGYIEAVRELACELLDLMAEGLWVPDRSVFSRLIRDDDSDSIIRLNHYPPMPILCKDKD 189

Query: 51  --SCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDV 108
             S CN+N  RVGFGEHSDPQILTILRSNDVGGLQIS + GVW+PV PD +AFCVNVGD+
Sbjct: 190 SSSPCNHN--RVGFGEHSDPQILTILRSNDVGGLQISLNDGVWVPVTPDPSAFCVNVGDL 247

Query: 109 LQAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVTTNRPSLYRPFTWA 168
           LQAMTNGRFVSVRH+AL+ S +SRMSMAYF AP L AR++ PPEMVT  +P+LYRPF+WA
Sbjct: 248 LQAMTNGRFVSVRHKALTNSYKSRMSMAYFAAPPLNARIAVPPEMVTPIKPALYRPFSWA 307

Query: 169 EYKATAYSLSLGDNRLDLF 187
           E+K  A++L LGD+RL LF
Sbjct: 308 EFKKAAFALRLGDSRLGLF 326

Source: Populus alba x Populus tremuloides

Species: Populus alba x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556484|ref|XP_002519276.1| gibberellin 2-oxidase, putative [Ricinus communis] gi|223541591|gb|EEF43140.1| gibberellin 2-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224108798|ref|XP_002314971.1| gibberellin 2-oxidase [Populus trichocarpa] gi|222864011|gb|EEF01142.1| gibberellin 2-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432055|ref|XP_002280426.1| PREDICTED: gibberellin 2-beta-dioxygenase 2 [Vitis vinifera] gi|296083208|emb|CBI22844.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|380448150|gb|AFD54198.1| gibberellin 2-beta-dioxygenase 4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101511|ref|XP_002312310.1| gibberellin 2-oxidase [Populus trichocarpa] gi|222852130|gb|EEE89677.1| gibberellin 2-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|340796367|gb|AEK70422.1| GA2ox6 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|67077818|dbj|BAD99510.1| gibberellin 2-oxidase [Vigna angularis] Back     alignment and taxonomy information
>gi|357448799|ref|XP_003594675.1| Gibberellin 2-oxidase [Medicago truncatula] gi|355483723|gb|AES64926.1| Gibberellin 2-oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356564662|ref|XP_003550570.1| PREDICTED: gibberellin 2-beta-dioxygenase 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
TAIR|locus:2202587321 GA2OX4 "gibberellin 2-oxidase 0.955 0.595 0.583 5.9e-57
UNIPROTKB|Q5W726382 OSJNBa0017J22.4 "Gibberellin 2 0.675 0.353 0.571 6.9e-55
TAIR|locus:2204823329 GA2OX6 "gibberellin 2-oxidase 0.93 0.565 0.534 1.2e-49
TAIR|locus:2198258341 GA2OX2 "gibberellin 2-oxidase" 0.995 0.583 0.442 1.9e-44
TAIR|locus:2032080329 ATGA2OX1 "Arabidopsis thaliana 0.935 0.568 0.440 8.4e-42
UNIPROTKB|Q8S0S6327 OJ1414_E05.17 "cDNA clone:001- 0.935 0.571 0.447 1.7e-41
TAIR|locus:505006289335 ATGA2OX3 "gibberellin 2-oxidas 0.935 0.558 0.414 1.3e-38
TAIR|locus:2165341378 GA20OX2 "gibberellin 20 oxidas 0.905 0.478 0.370 4.6e-25
UNIPROTKB|Q6L4Y3408 OSJNBb0092E21.11 "Putative gib 0.89 0.436 0.376 5.9e-25
TAIR|locus:2182875380 GA20OX3 "gibberellin 20-oxidas 0.885 0.465 0.365 7.6e-25
TAIR|locus:2202587 GA2OX4 "gibberellin 2-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 119/204 (58%), Positives = 147/204 (72%)

Query:     1 MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYP---------- 50
             +N YI AV++LA EILDL AEGL V  P  FS++I  V++DS  R+NHYP          
Sbjct:   119 VNCYIEAVKQLAREILDLTAEGLHV-PPHSFSRLISSVDSDSVLRVNHYPPSDQFFGEAN 177

Query:    51 -SCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVL 109
              S  + + TRVGFGEH+DPQILT+LRSN VGGLQ+S   G+W+ V+PD +AFCVNVGD+L
Sbjct:   178 LSDQSVSLTRVGFGEHTDPQILTVLRSNGVGGLQVSNSDGMWVSVSPDPSAFCVNVGDLL 237

Query:   110 QAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVTT-NRPSLYRPFTWA 168
             Q MTNGRF+SVRHRAL+Y  +SR+S AYF  P LQA++     MV T N+P LY+ FTW 
Sbjct:   238 QVMTNGRFISVRHRALTYGEESRLSTAYFAGPPLQAKIGPLSAMVMTMNQPRLYQTFTWG 297

Query:   169 EYKATAYSLSLGDNRLDLFINCKD 192
             EYK  AYSL L D+RLD+F  CKD
Sbjct:   298 EYKKRAYSLRLEDSRLDMFRTCKD 321
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0045487 "gibberellin catabolic process" evidence=IDA
GO:0052634 "C-19 gibberellin 2-beta-dioxygenase activity" evidence=IDA
GO:0016020 "membrane" evidence=IDA
UNIPROTKB|Q5W726 OSJNBa0017J22.4 "Gibberellin 2-oxidase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2204823 GA2OX6 "gibberellin 2-oxidase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198258 GA2OX2 "gibberellin 2-oxidase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032080 ATGA2OX1 "Arabidopsis thaliana gibberellin 2-oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8S0S6 OJ1414_E05.17 "cDNA clone:001-031-D01, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:505006289 ATGA2OX3 "gibberellin 2-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165341 GA20OX2 "gibberellin 20 oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6L4Y3 OSJNBb0092E21.11 "Putative gibberellin 20-oxidase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2182875 GA20OX3 "gibberellin 20-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766
4th Layer1.14.11.11LOW CONFIDENCE prediction!
3rd Layer1.14.11.13LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GA2ox5
gibberellin 2-oxidase (306 aa)
(Populus trichocarpa)
Predicted Functional Partners:
TB1
SubName- Full=Teosinte-branched-like protein; (454 aa)
      • 0.510
gw1.XVI.1327.1
type-a response regulator (146 aa)
      • 0.508
PtRR11
type-a response regulator (134 aa)
      • 0.508
gw1.XIX.1648.1
type-a response regulator (136 aa)
      • 0.508
gw1.XIII.278.1
type-a response regulator (128 aa)
      • 0.508
gw1.VIII.35.1
type-a response regulator (147 aa)
      • 0.508
gw1.VIII.329.1
type-a response regulator (160 aa)
      • 0.508
PtRR4
type-a response regulator (153 aa)
      • 0.508
gw1.II.42.1
type-a response regulator (176 aa)
      • 0.508
ARR3
type-a response regulator (193 aa)
      • 0.508

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-59
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 9e-37
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-35
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-34
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-29
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-29
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 4e-28
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 4e-27
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-26
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-26
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-26
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-25
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 4e-24
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 4e-24
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-22
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 8e-22
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-19
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-19
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 4e-19
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 9e-18
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-17
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-17
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-16
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-15
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 7e-15
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 3e-11
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information 
 Score =  189 bits (481), Expect = 1e-59
 Identities = 78/185 (42%), Positives = 117/185 (63%), Gaps = 1/185 (0%)

Query: 4   YIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYPSCCNN-NTTRVGF 62
           Y++ ++ ++ ++L+++ E L +      SK+++  E+DS  R+NHYP          +GF
Sbjct: 140 YMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVKESDSCLRMNHYPEKEETPEKVEIGF 199

Query: 63  GEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRH 122
           GEH+DPQ++++LRSND  GLQI    G W+ V PD ++F V VGD LQ MTNGRF SV+H
Sbjct: 200 GEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQVMTNGRFKSVKH 259

Query: 123 RALSYSSQSRMSMAYFGAPALQARVSAPPEMVTTNRPSLYRPFTWAEYKATAYSLSLGDN 182
           R ++ + +SR+SM YF  P L  +++    +V      LY  FTW++YK +AY   LGD 
Sbjct: 260 RVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQYKLSAYKTKLGDY 319

Query: 183 RLDLF 187
           RL LF
Sbjct: 320 RLGLF 324

Length = 335
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 200
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02216357 protein SRG1 100.0
PLN02904357 oxidoreductase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02947374 oxidoreductase 100.0
PLN02997325 flavonol synthase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.93
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.95
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.25
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.35
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 93.84
TIGR02466201 conserved hypothetical protein. This family consis 88.39
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 84.53
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 81.48
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information 
Probab=100.00  E-value=6.5e-53  Score=367.44  Aligned_cols=187  Identities=34%  Similarity=0.583  Sum_probs=169.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhhc---CCCCCceeEEeecCCCCCCCCCccccccccCCCceeEEeeC
Q 048650            1 MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIR---DVENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSN   77 (200)
Q Consensus         1 ~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~---~~~~~~~lr~~~Yp~~~~~~~~~~g~~~HtD~g~lTll~q~   77 (200)
                      +++|+++|.+|+++||++||++||++ +++|+.++.   ...+.+.+|++|||||+.+ +..+|+++|||+|+||||+||
T Consensus       167 ~~~Y~~~~~~L~~~ll~~la~~Lgl~-~~~~~~~~~~~~~~~~~~~lRl~~YPp~p~~-~~~~G~~~HtD~g~lTiL~Qd  244 (358)
T PLN02254        167 MEEYQKEMKKLAERLMWLMLGSLGIT-EEDIKWAGPKSGSQGAQAALQLNSYPVCPDP-DRAMGLAPHTDSSLLTILYQS  244 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHhhcccccCcceeEEEecCCCCCCc-ccccCcCCccCCCcEEEEecC
Confidence            47899999999999999999999998 788877662   1245678999999999875 678999999999999999999


Q ss_pred             CCCCceEeCCCCcEEEccCCCCceeecchhhhhhhhCCceeccccccccCCCCCeeEEEEeeCCCCCceEeCCCCCcCCC
Q 048650           78 DVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVTTN  157 (200)
Q Consensus        78 ~~~GLqv~~~~g~W~~v~p~~~~~vvn~Gd~l~~~TnG~~~s~~HRV~~~~~~~R~Si~~F~~p~~~~~i~pl~~~~~~~  157 (200)
                      +++||||+..+|+|++|+|.||++|||+||+||+||||+|||++|||+.+..++|||++||++|+.|++|+|++++++++
T Consensus       245 ~v~GLQV~~~~~~Wi~V~p~pgalVVNiGD~lq~~SNg~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~lv~~~  324 (358)
T PLN02254        245 NTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVVNKTRHRISVAYFYGPPSDVQISPLPKLVDPN  324 (358)
T ss_pred             CCCCceEECCCCEEEEcccCCCCEEEEhHHHHHHHhCCeeccccceeecCCCCCEEEEEEEecCCCCcEEeCcHHhcCCC
Confidence            99999999766699999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             CCCCcCCccHHHHHHHHHhcccCCccccceeccc
Q 048650          158 RPSLYRPFTWAEYKATAYSLSLGDNRLDLFINCK  191 (200)
Q Consensus       158 ~p~~y~~~t~~e~~~~~~~~~~~~~~l~~~~~~~  191 (200)
                      +|++|++++++||++..++...+  .++.+++++
T Consensus       325 ~p~~Y~~~t~~ey~~~~~~~~~~--~~~~~~~~~  356 (358)
T PLN02254        325 HPPLYRSVTWKEYLATKAKHFNK--ALSLIRNCN  356 (358)
T ss_pred             CCcccCCcCHHHHHHHHHHhhhh--hhhhhhccC
Confidence            99999999999999998876554  566666654

>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-16
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-16
1w9y_A319 The Structure Of Acc Oxidase Length = 319 8e-16
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 3e-15
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 6e-10
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-09
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 9/173 (5%)
Query: 2   NNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSF-FRINHYPSCCNNNTTRV 60
           + Y + +R LA ++   ++ GL + +P    K +  +E      +IN+YP C       +
Sbjct: 170 SEYAKCLRLLATKVFKALSVGLGL-EPDRLEKEVGGLEELLLQMKINYYPKCPQPELA-L 227
Query: 61  GFGEHSDPQILTILRSNDVGGLQISPDHGVWIPV--APDSAAFCVNVGDVLQAMTNGRFV 118
           G   H+D   LT +  N V GLQ+  + G W+     PDS    +++GD L+ ++NG++ 
Sbjct: 228 GVEAHTDVSALTFILHNMVPGLQLFYE-GKWVTAKCVPDS--IVMHIGDTLEILSNGKYK 284
Query: 119 SVRHRALSYSSQSRMSMAYFGAPALQARVSAP-PEMVTTNRPSLYRPFTWAEY 170
           S+ HR L    + R+S A F  P     V  P PEMV+   P+ + P T+A++
Sbjct: 285 SILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH 337
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 2e-56
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 5e-55
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 6e-54
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-50
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 9e-47
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-45
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  181 bits (461), Expect = 2e-56
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 5/172 (2%)

Query: 1   MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFF-RINHYPSCCNNNTTR 59
            + Y + +R LA ++   ++ GL + +P    K +  +E      +IN+YP C       
Sbjct: 169 TSEYAKCLRLLATKVFKALSVGLGL-EPDRLEKEVGGLEELLLQMKINYYPKCPQPELA- 226

Query: 60  VGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVS 119
           +G   H+D   LT +  N V GLQ+  + G W+       +  +++GD L+ ++NG++ S
Sbjct: 227 LGVEAHTDVSALTFILHNMVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSNGKYKS 285

Query: 120 VRHRALSYSSQSRMSMAYFGAPALQARVSAP-PEMVTTNRPSLYRPFTWAEY 170
           + HR L    + R+S A F  P     V  P PEMV+   P+ + P T+A++
Sbjct: 286 ILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH 337
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 94.93
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 93.76
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 89.97
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 86.42
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 84.45
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 84.0
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 81.8
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 80.41
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=3.1e-52  Score=356.36  Aligned_cols=173  Identities=25%  Similarity=0.455  Sum_probs=159.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhhcCCCCCceeEEeecCCCCCCCCCccccccccCCCceeEEeeCCCC
Q 048650            1 MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSNDVG   80 (200)
Q Consensus         1 ~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~g~~~HtD~g~lTll~q~~~~   80 (200)
                      |++|+++|.+++..|+++||++||++ +++|++.+..  +.+.+|++||||++.+.+ .+|+++|||+|+||||+||+++
T Consensus       131 ~~~y~~~~~~l~~~ll~~la~~Lgl~-~~~f~~~~~~--~~~~lr~~~Ypp~~~~~~-~~g~~~HtD~g~lTlL~qd~v~  206 (312)
T 3oox_A          131 VSWLYNSLDGMGGKVLEAIATYLKLE-RDFFKPTVQD--GNSVLRLLHYPPIPKDAT-GVRAGAHGDINTITLLLGAEEG  206 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSC-TTTTHHHHTT--CCCEEEEEEECCCSSCCC---CEEEECCCSSEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcC-HHHHHHHhcC--CcceeeeEecCCCCCCcC-CcCccceecCceEEEEeEcCcC
Confidence            47899999999999999999999999 7999998853  567899999999987533 4999999999999999999999


Q ss_pred             CceEeCCCCcEEEccCCCCceeecchhhhhhhhCCceeccccccccCC----CCCeeEEEEeeCCCCCceEeCCCCCcCC
Q 048650           81 GLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRHRALSYS----SQSRMSMAYFGAPALQARVSAPPEMVTT  156 (200)
Q Consensus        81 GLqv~~~~g~W~~v~p~~~~~vvn~Gd~l~~~TnG~~~s~~HRV~~~~----~~~R~Si~~F~~p~~~~~i~pl~~~~~~  156 (200)
                      ||||++++|+|++|+|.||++|||+||+||+||||+|||++|||+.+.    ..+|||++||++|+.|++|+|+++++++
T Consensus       207 GLqV~~~~g~W~~V~p~pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~  286 (312)
T 3oox_A          207 GLEVLDRDGQWLPINPPPGCLVINIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTA  286 (312)
T ss_dssp             CEEEECTTSCEEECCCCSSCEEEEECHHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCS
T ss_pred             ceEEECCCCcEEECCCCCCeEEEEhHHHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCC
Confidence            999998999999999999999999999999999999999999998763    5689999999999999999999999999


Q ss_pred             CCCCCcC-CccHHHHHHHHHhc
Q 048650          157 NRPSLYR-PFTWAEYKATAYSL  177 (200)
Q Consensus       157 ~~p~~y~-~~t~~e~~~~~~~~  177 (200)
                      ++|++|+ ++|++||++.+++.
T Consensus       287 ~~p~~y~~~~t~~eyl~~r~~~  308 (312)
T 3oox_A          287 ENPDRYPESITADEFLQQRLRE  308 (312)
T ss_dssp             SSCCSCSSCEEHHHHHHHHHHH
T ss_pred             CCcccCCCCeeHHHHHHHHHHH
Confidence            9999999 99999999988763
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 200
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-33
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-31
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 6e-25
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 4e-19
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  119 bits (298), Expect = 4e-33
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 3/171 (1%)

Query: 1   MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSFFRINHYPSCCNNNTTRV 60
            + Y + +R LA ++   ++ GL + +P    K +  +E        +Y   C      +
Sbjct: 168 TSEYAKCLRLLATKVFKALSVGLGL-EPDRLEKEVGGLEELLLQMKINYYPKCPQPELAL 226

Query: 61  GFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSV 120
           G   H+D   LT +  N V GLQ+  + G W+       +  +++GD L+ ++NG++ S+
Sbjct: 227 GVEAHTDVSALTFILHNMVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSI 285

Query: 121 RHRALSYSSQSRMSMAYFGAPALQARVSAP-PEMVTTNRPSLYRPFTWAEY 170
            HR L    + R+S A F  P     V  P PEMV+   P+ + P T+A++
Sbjct: 286 LHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH 336
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 92.91
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 85.14
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=7.3e-51  Score=344.30  Aligned_cols=185  Identities=28%  Similarity=0.517  Sum_probs=162.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhhcC-CCCCceeEEeecCCCCCCCCCccccccccCCCceeEEeeC-C
Q 048650            1 MNNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRD-VENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSN-D   78 (200)
Q Consensus         1 ~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~-~~~~~~lr~~~Yp~~~~~~~~~~g~~~HtD~g~lTll~q~-~   78 (200)
                      |++|+++|.+|+..|+++++++||++ +++|.+.+.. ....+.+|++||||++.+ +...|+++|||+|+||||+|+ .
T Consensus       113 ~~~y~~~~~~la~~ll~~la~~Lgl~-~~~f~~~~~~~~~~~~~lr~~~YP~~~~~-~~~~g~~~HtD~~~lTlL~q~~~  190 (307)
T d1w9ya1         113 MRDFAKRLEKLAEELLDLLCENLGLE-KGYLKNAFYGSKGPNFGTKVSNYPPCPKP-DLIKGLRAHTDAGGIILLFQDDK  190 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCC-TTHHHHHHHTTTCCEEEEEEEECCCCSCG-GGGSSCCCBCCSSSEEEEEESSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHhhhhccccccccceecCCCCCccc-ccccccccccccceeEEeeccCC
Confidence            46899999999999999999999999 7999887643 345678999999999885 677899999999999999995 5


Q ss_pred             CCCceEeCCCCcEEEccCCCCceeecchhhhhhhhCCceeccccccccCCCCCeeEEEEeeCCCCCceEeCCCCCcC---
Q 048650           79 VGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVT---  155 (200)
Q Consensus        79 ~~GLqv~~~~g~W~~v~p~~~~~vvn~Gd~l~~~TnG~~~s~~HRV~~~~~~~R~Si~~F~~p~~~~~i~pl~~~~~---  155 (200)
                      ++||||. ++|+|++|+|.+|++|||+||+||+||||+|||+.|||+.+.+.+|||++||++|+.|++|+|++++++   
T Consensus       191 ~ggl~~~-~~g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~~  269 (307)
T d1w9ya1         191 VSGLQLL-KDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEA  269 (307)
T ss_dssp             CCCEEEE-ETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC----
T ss_pred             CCeEEEe-cCCcEEEeccCCCeEEEEcchhhHHhhCCcccCcCceeecCCCCCcEEEEEEeeCCCCCEEeCCHHHhcccC
Confidence            7999997 589999999999999999999999999999999999999988889999999999999999999999986   


Q ss_pred             CCCCCCcCCccHHHHHHHHHhcccCCc--ccccee
Q 048650          156 TNRPSLYRPFTWAEYKATAYSLSLGDN--RLDLFI  188 (200)
Q Consensus       156 ~~~p~~y~~~t~~e~~~~~~~~~~~~~--~l~~~~  188 (200)
                      +++|++|+|+|++||++.+++.+++.+  +|+.+|
T Consensus       270 ~~~p~~y~~~t~~ey~~~~~~~~~~~~~~~~~~~~  304 (307)
T d1w9ya1         270 EENKQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMK  304 (307)
T ss_dssp             ----CCCCCEEHHHHHHTTTTTTCSSHHHHHHHHH
T ss_pred             ccCCCCCCCeeHHHHHHHHHhccCCcccHHHHHhh
Confidence            467899999999999999888888653  255554
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure