Citrus Sinensis ID: 048702

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MVVASASAIRTKKTRAVGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQRAGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVSLQRPSLYMPFTWGEYKKAVYSLRLGESRLDLFKIRPGDKTGL
ccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccEEEEEEEEcccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccEEEEEccccccEEEEccccEEEcccccccEEEEEccEEEEEEcccccccccEEEEcccccEEEEEEccccccccEEEccccccccccccccccccHHHHHHHHHHccccccccccccccccccccc
ccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccccEEEccccccccHHEEEEccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccEEEEEcccccccccHHHHHccccccccccEEEEEEccccccEEEEEccccEEEccccccEEEEEEccHEEEEEcccEEEEEEEEEEEccccEEEEEEEcccccccEEcccHHHcccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHccccc
MVVASASairtkktravgvptidlslENKELLIKQIVSACEEYgffkvtnhgvpreiISRLedegvdffdkpvrekqragpacplgygsrnigfngdsGELEYLLLHAnptsiaersktisndplkfsraANDYVHAVRGLTCEILDLAAeglgvrdrfVFSRLIRdvhsdsilrlnhyppvedwdphnsrvgfgdhsdpqILTLLRsnnvggfqirlndglwvpvppdptgfYVLVGDALQvltngrfrsVRHRAITNSLNSRmsmvyfgappldawitslpetvslqrpslympftwgeyKKAVYSLRlgesrldlfkirpgdktgl
mvvasasairtkktravgvptidlslenKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDkpvrekqragpacplgygsrNIGFNGDSGELEYLLLHANPTSIAersktisndplKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVltngrfrsvRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVSLQRPSLYMPFTWGEYKKAVYslrlgesrldlfkirpgdktgl
MVVASASAIRTKKTRAVGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQRAGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVSLQRPSLYMPFTWGEYKKAVYSLRLGESRLDLFKIRPGDKTGL
**************RAVGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPV*****AGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSI***********LKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVSLQRPSLYMPFTWGEYKKAVYSLRLGESRLDLFKI********
MV*****************PTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVRE***********YGSRNIGFNGDSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVSLQRPSLYMPFTWGEYKKAVYSLRLGESRLDLF**********
***********KKTRAVGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQRAGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVSLQRPSLYMPFTWGEYKKAVYSLRLGESRLDLFKIRPGDKTGL
**************RAVGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQRAGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVSLQRPSLYMPFTWGEYKKAVYSLRLGESRLDLFKIRPG*****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVVASASAIRTKKTRAVGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQRAGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVSLQRPSLYMPFTWGEYKKAVYSLRLGESRLDLFKIRPGDKTGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query329 2.2.26 [Sep-21-2011]
Q9XHM5345 Gibberellin 2-beta-dioxyg N/A no 0.975 0.930 0.626 1e-121
Q9XG83332 Gibberellin 2-beta-dioxyg N/A no 0.930 0.921 0.491 2e-83
Q9XFR9341 Gibberellin 2-beta-dioxyg no no 0.878 0.847 0.493 4e-80
Q9SQ80327 Gibberellin 2-beta-dioxyg N/A no 0.899 0.905 0.483 1e-79
O64692335 Gibberellin 2-beta-dioxyg no no 0.933 0.916 0.455 1e-75
Q8LEA2329 Gibberellin 2-beta-dioxyg no no 0.902 0.902 0.464 3e-73
Q39111378 Gibberellin 20 oxidase 2 no no 0.841 0.732 0.328 1e-34
Q9FFQ4325 Probable flavonol synthas no no 0.848 0.858 0.319 1e-33
O04395291 Flavonol synthase/flavano N/A no 0.832 0.941 0.298 5e-32
O04707365 Gibberellin 20 oxidase 1- N/A no 0.787 0.709 0.335 9e-32
>sp|Q9XHM5|G2OX2_PEA Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1 Back     alignment and function desciption
 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/335 (62%), Positives = 263/335 (78%), Gaps = 14/335 (4%)

Query: 1   MVVAS-ASAIRTKKTRAVGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIIS 59
           MVV S  S IRTKKT+AVG+PTIDLSLE  +L  + +V ACEEYGFFKV NH VP+E+IS
Sbjct: 1   MVVPSPTSMIRTKKTKAVGIPTIDLSLERSQL-SELVVKACEEYGFFKVVNHSVPKEVIS 59

Query: 60  RLEDEGVDFFDKPVREKQRAGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKT 119
           RL++EG++FF K   EK++AG + P GYG +NIG NGD GELEYLLLH+NP SI+ERSKT
Sbjct: 60  RLDEEGIEFFSKNSSEKRQAGTSTPFGYGCKNIGPNGDKGELEYLLLHSNPISISERSKT 119

Query: 120 ISND-PLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNH 178
           I+ D P+KFS   NDY+ AV+ LTCEIL+LAAEGL V D+   S++I+D HSDS+LR+NH
Sbjct: 120 IAKDHPIKFSCIVNDYIKAVKDLTCEILELAAEGLWVPDKSSLSKIIKDEHSDSLLRINH 179

Query: 179 YPPV-----EDWDP------HNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVP 227
           YPPV     ++WDP      +N+ +GFG+HSDPQILT+LRSNNVGG QI  + GLW+PVP
Sbjct: 180 YPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTILRSNNVGGLQISTHHGLWIPVP 239

Query: 228 PDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVS 287
           PDP+ FYV+VGDALQVLTNGRF SVRHR +TN+   RMSM+YF APPL+  I+ L + V+
Sbjct: 240 PDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMVT 299

Query: 288 LQRPSLYMPFTWGEYKKAVYSLRLGESRLDLFKIR 322
              P LY PFTW +YK+A Y+LRLG++RLD FK++
Sbjct: 300 AHSPCLYRPFTWAQYKQAAYALRLGDTRLDQFKVQ 334
Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level. Catabolism of gibberellins (GAs) plays a central role in plant development. Converts GA9/GA20 to GA51/GA29 and GA4/GA1 to GA34/GA8.
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 3
>sp|Q9XG83|G2OX_PHACN Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XFR9|G2OX2_ARATH Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQ80|G2OX1_PEA Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1 Back     alignment and function description
>sp|O64692|G2OX3_ARATH Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1 Back     alignment and function description
>sp|Q8LEA2|G2OX1_ARATH Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2 Back     alignment and function description
>sp|Q39111|GAOX2_ARATH Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FFQ4|FLS5_ARATH Probable flavonol synthase 5 OS=Arabidopsis thaliana GN=FLS5 PE=2 SV=1 Back     alignment and function description
>sp|O04395|FLS_MATIN Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
255548359333 gibberellin 2-oxidase, putative [Ricinus 0.993 0.981 0.686 1e-133
225437645333 PREDICTED: gibberellin 2-beta-dioxygenas 0.993 0.981 0.677 1e-130
297744020334 unnamed protein product [Vitis vinifera] 0.969 0.955 0.688 1e-129
224130932322 gibberellin 2-oxidase [Populus trichocar 0.969 0.990 0.693 1e-128
224064641322 gibberellin 2-oxidase [Populus trichocar 0.969 0.990 0.681 1e-127
356536677356 PREDICTED: gibberellin 2-beta-dioxygenas 0.984 0.910 0.611 1e-122
356499745356 PREDICTED: gibberellin 2-beta-dioxygenas 0.984 0.910 0.612 1e-122
67077820355 gibberellin 2-oxidase [Vigna angularis] 0.963 0.892 0.621 1e-122
388490952343 unknown [Lotus japonicus] 0.996 0.956 0.613 1e-120
49035760345 RecName: Full=Gibberellin 2-beta-dioxyge 0.975 0.930 0.626 1e-119
>gi|255548359|ref|XP_002515236.1| gibberellin 2-oxidase, putative [Ricinus communis] gi|223545716|gb|EEF47220.1| gibberellin 2-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/332 (68%), Positives = 268/332 (80%), Gaps = 5/332 (1%)

Query: 1   MVVASASAIRTKKTRAVGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISR 60
           MVV S + +R KKT+AVG+PT+DLSL N+ ++ + IV ACE+YGFFKV NHGV +E+++R
Sbjct: 1   MVVPSPTPMRIKKTKAVGIPTVDLSL-NRSIVSELIVRACEDYGFFKVVNHGVNKEVVAR 59

Query: 61  LEDEGVDFFDKPVREKQRAGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTI 120
           LE+EG DFF KP +EKQRAGPA P GYG +NIG NGD GELEYLLL  NP S+AERSKT+
Sbjct: 60  LEEEGSDFFAKPAKEKQRAGPATPFGYGCKNIGCNGDMGELEYLLLQTNPVSVAERSKTV 119

Query: 121 SNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYP 180
           S DP KFS A NDY+  VR L CEILDL  EGL ++D+FVFSRLIRDVHSDS+LRLNHYP
Sbjct: 120 SVDPAKFSCAVNDYIEEVRELACEILDLLGEGLWMKDKFVFSRLIRDVHSDSVLRLNHYP 179

Query: 181 P----VEDWDPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVL 236
                V DWDP   R+GFG+HSDPQILT+LRSN+V G QI L+DGLWVPVPPDPTGF+++
Sbjct: 180 SAVKEVMDWDPSPKRIGFGEHSDPQILTILRSNDVAGLQICLHDGLWVPVPPDPTGFFLI 239

Query: 237 VGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVSLQRPSLYMP 296
           VGDALQVLTNGR  SVRHRA+ NS  SRMSM+YFGAPPL+ WI+ L E VS Q P+ Y P
Sbjct: 240 VGDALQVLTNGRLMSVRHRALANSNKSRMSMMYFGAPPLNTWISPLQEMVSPQNPTRYKP 299

Query: 297 FTWGEYKKAVYSLRLGESRLDLFKIRPGDKTG 328
           FTWGE+KKA YSLRLG+SRLDLFKI   D+  
Sbjct: 300 FTWGEFKKAAYSLRLGDSRLDLFKIHSTDRIA 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437645|ref|XP_002272155.1| PREDICTED: gibberellin 2-beta-dioxygenase 2 [Vitis vinifera] gi|147843548|emb|CAN79462.1| hypothetical protein VITISV_042495 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744020|emb|CBI36990.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224130932|ref|XP_002320960.1| gibberellin 2-oxidase [Populus trichocarpa] gi|222861733|gb|EEE99275.1| gibberellin 2-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224064641|ref|XP_002301530.1| gibberellin 2-oxidase [Populus trichocarpa] gi|222843256|gb|EEE80803.1| gibberellin 2-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356536677|ref|XP_003536863.1| PREDICTED: gibberellin 2-beta-dioxygenase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356499745|ref|XP_003518697.1| PREDICTED: gibberellin 2-beta-dioxygenase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|67077820|dbj|BAD99511.1| gibberellin 2-oxidase [Vigna angularis] Back     alignment and taxonomy information
>gi|388490952|gb|AFK33542.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|49035760|sp|Q9XHM5.1|G2OX2_PEA RecName: Full=Gibberellin 2-beta-dioxygenase 2; AltName: Full=GA 2-oxidase 2; AltName: Full=Gibberellin 2-beta-hydroxylase 2; AltName: Full=Gibberellin 2-oxidase 2 gi|5579092|gb|AAD45424.1| gibberellin 2-oxidase-like protein [Pisum sativum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
TAIR|locus:2204823329 GA2OX6 "gibberellin 2-oxidase 0.972 0.972 0.584 2e-95
UNIPROTKB|Q5W726382 OSJNBa0017J22.4 "Gibberellin 2 0.498 0.429 0.511 1.5e-81
TAIR|locus:2202587321 GA2OX4 "gibberellin 2-oxidase 0.887 0.909 0.539 1e-77
TAIR|locus:2198258341 GA2OX2 "gibberellin 2-oxidase" 0.917 0.885 0.477 4e-74
UNIPROTKB|Q8S0S6327 OJ1414_E05.17 "cDNA clone:001- 0.905 0.911 0.473 1.4e-71
TAIR|locus:505006289335 ATGA2OX3 "gibberellin 2-oxidas 0.933 0.916 0.455 4.3e-70
TAIR|locus:2032080329 ATGA2OX1 "Arabidopsis thaliana 0.899 0.899 0.472 1.8e-69
UNIPROTKB|Q68Y45242 P0022D06.9 "Putative gibberell 0.316 0.429 0.522 6e-48
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.881 0.796 0.336 1e-36
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.875 0.815 0.338 5.7e-36
TAIR|locus:2204823 GA2OX6 "gibberellin 2-oxidase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 191/327 (58%), Positives = 232/327 (70%)

Query:     1 MVVASASAIRT--KKTRA---VGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPR 55
             MV+ S++ ++T  KKT +      P ID SL ++  L ++IV ACE  GFFKV NHGV  
Sbjct:     1 MVLPSSTPLQTTGKKTISSPEYNFPVIDFSLNDRSKLSEKIVKACEVNGFFKVINHGVKP 60

Query:    56 EIISRLEDEGVDFFDKPVREKQRAGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAE 115
             EII R E EG +FF+KP  +K RAGPA P GYG +NIGFNGD GELEYLLLHANPT++A+
Sbjct:    61 EIIKRFEHEGEEFFNKPESDKLRAGPASPFGYGCKNIGFNGDLGELEYLLLHANPTAVAD 120

Query:   116 RSKTISND-PLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSIL 174
             +S+TIS+D P KFS A NDY+  VR L CEI+DL  E L  +     S LIRDV SDSIL
Sbjct:   121 KSETISHDDPFKFSSATNDYIRTVRDLACEIIDLTIENLWGQKSSEVSELIRDVRSDSIL 180

Query:   175 RLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFY 234
             RLNHYPP         ++GFG+HSDPQILT+LRSN+V G +I   DGLW+P+P DPT F+
Sbjct:   181 RLNHYPPAPYALSGVGQIGFGEHSDPQILTVLRSNDVDGLEICSRDGLWIPIPSDPTCFF 240

Query:   235 VLVGDALQVLTNGRFRSVRHRAITNSLNS-RMSMVYFGAPPLDAWITSLPETVSLQRPSL 293
             VLVGD LQ LTNGRF SVRHR + N+    RMS +YF APPL+A I+ LP+ VS + P  
Sbjct:   241 VLVGDCLQALTNGRFTSVRHRVLANTAKKPRMSAMYFAAPPLEAKISPLPKMVSPENPRR 300

Query:   294 YMPFTWGEYKKAVYSLRLGESRLDLFK 320
             Y  FTWG+YKKA YSLRL   RL+ FK
Sbjct:   301 YNSFTWGDYKKATYSLRLDVPRLEFFK 327
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009639 "response to red or far red light" evidence=IEP
GO:0045487 "gibberellin catabolic process" evidence=IDA
GO:0052634 "C-19 gibberellin 2-beta-dioxygenase activity" evidence=IDA
GO:0052635 "C-20 gibberellin 2-beta-dioxygenase activity" evidence=IDA
GO:0010286 "heat acclimation" evidence=RCA
UNIPROTKB|Q5W726 OSJNBa0017J22.4 "Gibberellin 2-oxidase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2202587 GA2OX4 "gibberellin 2-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198258 GA2OX2 "gibberellin 2-oxidase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8S0S6 OJ1414_E05.17 "cDNA clone:001-031-D01, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:505006289 ATGA2OX3 "gibberellin 2-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032080 ATGA2OX1 "Arabidopsis thaliana gibberellin 2-oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q68Y45 P0022D06.9 "Putative gibberellin 2-oxidase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XHM5G2OX2_PEA1, ., 1, 4, ., 1, 1, ., 1, 30.62680.97560.9304N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.976
4th Layer1.14.11.11LOW CONFIDENCE prediction!
3rd Layer1.14.11.130.991
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028161001
SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_42, whole genome shotgun sequence); (333 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-106
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-50
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 3e-50
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-48
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 4e-48
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 7e-48
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 3e-47
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-45
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 7e-42
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 5e-41
PLN02997325 PLN02997, PLN02997, flavonol synthase 3e-40
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-38
PLN02704335 PLN02704, PLN02704, flavonol synthase 5e-38
PLN02947374 PLN02947, PLN02947, oxidoreductase 9e-36
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-29
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 3e-29
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 8e-29
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-28
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-26
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-25
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 8e-25
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 3e-24
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-22
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 1e-21
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-21
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 9e-20
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 6e-13
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 8e-07
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information 
 Score =  313 bits (804), Expect = e-106
 Identities = 140/318 (44%), Positives = 201/318 (63%), Gaps = 5/318 (1%)

Query: 7   SAIRTKKTRAVGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGV 66
                 K   V +P IDL+  + +    QIV ACEE+GFFKV NHGV  +++++LE E +
Sbjct: 15  YVNPKCKPVPVLIPVIDLTDSDAK---TQIVKACEEFGFFKVINHGVRPDLLTQLEQEAI 71

Query: 67  DFFDKPVREKQRAGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTI-SNDPL 125
            FF  P   K +AGP  P GYG++ IG NGD G LEY+LL+AN    + ++  +  + P 
Sbjct: 72  GFFALPHSLKDKAGPPDPFGYGTKRIGPNGDVGWLEYILLNANLCLESHKTTAVFRHTPA 131

Query: 126 KFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDW 185
            F  A  +Y+  ++ ++ ++L++  E L +  +   S+L++   SDS LR+NHYP  E+ 
Sbjct: 132 IFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVKESDSCLRMNHYPEKEE- 190

Query: 186 DPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLT 245
            P    +GFG+H+DPQ+++LLRSN+  G QI + DG WV VPPD + F+VLVGD LQV+T
Sbjct: 191 TPEKVEIGFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQVMT 250

Query: 246 NGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVSLQRPSLYMPFTWGEYKKA 305
           NGRF+SV+HR +TN+  SR+SM+YF  PPL   I  L   V  Q   LY  FTW +YK +
Sbjct: 251 NGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQYKLS 310

Query: 306 VYSLRLGESRLDLFKIRP 323
            Y  +LG+ RL LF+ +P
Sbjct: 311 AYKTKLGDYRLGLFEKQP 328

Length = 335
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 329
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02216357 protein SRG1 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02704335 flavonol synthase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.83
PLN03176120 flavanone-3-hydroxylase; Provisional 99.7
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.34
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.17
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 94.81
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.24
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information 
Probab=100.00  E-value=9.7e-74  Score=528.93  Aligned_cols=308  Identities=45%  Similarity=0.809  Sum_probs=266.0

Q ss_pred             ccCCCCCCCceEeCCCcccHHHHHHHHHHHHhccEEEEEecCCCHHHHHHHHHHhhhhcCCCHHHHhhcCCCCCCCCccC
Q 048702           11 TKKTRAVGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQRAGPACPLGYGSR   90 (329)
Q Consensus        11 ~~~~~~~~iPvIDls~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~Gy~~~   90 (329)
                      .++....+||||||+..   +..++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++...+++||+..
T Consensus        19 ~~~~~~~~iPvIDls~~---~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~Gy~~~   95 (335)
T PLN02156         19 KCKPVPVLIPVIDLTDS---DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPPDPFGYGTK   95 (335)
T ss_pred             cccCCCCCCCcccCCCh---HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCCCCcccCcc
Confidence            45667778999999843   356799999999999999999999999999999999999999999999976666799654


Q ss_pred             CCCCCCCCCchhhhcccCCCcc-hhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhHHhhhCCC
Q 048702           91 NIGFNGDSGELEYLLLHANPTS-IAERSKTISNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVH  169 (329)
Q Consensus        91 ~~~~~~~~~~~e~~~~~~~~~~-~~~~~~~wp~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~  169 (329)
                      ..+..+..+|.|.+.+...+.. ....+|.||+.++.||+.+++|+++|.+|+.+|+++||++||++++++|.+++.+..
T Consensus        96 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~~~~  175 (335)
T PLN02156         96 RIGPNGDVGWLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVKE  175 (335)
T ss_pred             ccCCCCCCCceeeEeeecCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhcCCC
Confidence            4444455688888877554332 112468899888999999999999999999999999999999963578888775434


Q ss_pred             CcceeEEeeeCCCCCCCCCCCccccccccCCCceEEEeeCCCCcceEEecCCceEeCCCCCCeEEEEecchhhHhhCCce
Q 048702          170 SDSILRLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRF  249 (329)
Q Consensus       170 ~~~~lrl~~Ypp~~~~~~~~~~~~~~~HtD~~~lTlL~qd~~~GLqv~~~~g~W~~v~~~~~~~vVn~Gd~l~~~T~g~~  249 (329)
                      +.+.||++||||++.... ...+|+++|||+|+||||+||+++||||+.++|+|++|+|.+|++|||+||+|++||||+|
T Consensus       176 ~~~~lRl~~YP~~~~~~~-~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g~Wi~Vpp~pga~VVNiGD~l~~wTNg~~  254 (335)
T PLN02156        176 SDSCLRMNHYPEKEETPE-KVEIGFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQVMTNGRF  254 (335)
T ss_pred             ccceEeEEeCCCCCCCcc-ccccCCCCccCCCceEEEEeCCCCceEEEeCCCCEEEccCCCCcEEEEhHHHHHHHhCCee
Confidence            568999999999975321 3478999999999999999999999999988999999999999999999999999999999


Q ss_pred             eccccccccCCCCceEEEEeeeCCCCCCeEecCccccCCCCCCCCCccCHHHHHHHHHhcccCcccccccccc
Q 048702          250 RSVRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVSLQRPSLYMPFTWGEYKKAVYSLRLGESRLDLFKIR  322 (329)
Q Consensus       250 ~a~~HRV~~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  322 (329)
                      +||.|||+.+...+|||++||++|+.|++|.|++++++.++|.+|+|++++||+..++.+.+...+|+.++..
T Consensus       255 kSt~HRVv~~~~~~R~SiafF~~P~~d~~i~pl~~~v~~~~p~~y~p~~~~ey~~~~~~~~~~~~~~~~~~~~  327 (335)
T PLN02156        255 KSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQYKLSAYKTKLGDYRLGLFEKQ  327 (335)
T ss_pred             eccceeeecCCCCCEEEEEEeecCCCCCEEeCChHhcCCCCCccCCCccHHHHHHHHHhccCCCccchhhhcc
Confidence            9999999987788999999999999999999999999988999999999999999999887776556555443

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-26
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-26
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 7e-26
1w9y_A319 The Structure Of Acc Oxidase Length = 319 4e-24
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 5e-13
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 8e-12
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 2e-06
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 2e-06
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 152/316 (48%), Gaps = 37/316 (11%)
Query: 9   IRTKKTRAVGVPTIDL-SLEN-----KELLIKQIVSACEEYGFFKVTNHGVPREIISRLE 62
           +  KK     VPTIDL ++E+     +E  I+++  A  ++G   + NHG+P +++ R++
Sbjct: 37  LEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVK 96
Query: 63  DEGVDFFDKPVREKQR----AGPACPLGYGSRNIGFNGDSGELE---YLLLHANPTSIAE 115
             G +FF   V EK++           GYGS+    N  SG+LE   Y    A P    E
Sbjct: 97  KAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLA--NNASGQLEWEDYFFHLAYP----E 150
Query: 116 RSKTIS---NDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDS 172
             + +S     P  +  A ++Y   +R L  ++    + GLG+       RL ++V    
Sbjct: 151 EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEP----DRLEKEVGGLE 206
Query: 173 IL----RLNHYPPVEDWDPHNS-RVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVP 227
            L    ++N+YP      P     +G   H+D   LT +  N V G Q+   +G WV   
Sbjct: 207 ELLLQMKINYYPKC----PQPELALGVEAHTDVSALTFILHNMVPGLQL-FYEGKWVTAK 261
Query: 228 PDPTGFYVLVGDALQVLTNGRFRSVRHRAITNSLNSRMSMVYFGAPPLDAWITS-LPETV 286
             P    + +GD L++L+NG+++S+ HR + N    R+S   F  PP D  +   LPE V
Sbjct: 262 CVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV 321
Query: 287 SLQRPSLYMPFTWGEY 302
           S++ P+ + P T+ ++
Sbjct: 322 SVESPAKFPPRTFAQH 337
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-90
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-80
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 6e-78
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 4e-67
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-64
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-63
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
 Score =  271 bits (695), Expect = 1e-90
 Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 22/274 (8%)

Query: 16  AVGVPTIDLSLENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVRE 75
            + + TID    +     K+ V +  E GF  ++NH + +E++ R+  E   FF+   + 
Sbjct: 1   GMKLETIDYRAAD---SAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKN 57

Query: 76  KQRAGPACPLGYGSRNIGFNGDSGELEYLL--LHANPTSIAERSKTISNDPLKFSRAAND 133
           +         G+   +I        ++ +    H  P             P         
Sbjct: 58  EFMFNRETHDGFFPASISETAKGHTVKDIKEYYHVYP---------WGRIPDSLRANILA 108

Query: 134 YVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSD---SILRLNHYPPVEDWDPHNS 190
           Y      L  E+L+          +  FS  + ++ ++   ++LR+ HYPP+   D    
Sbjct: 109 YYEKANTLASELLEWIETYSPDEIKAKFSIPLPEMIANSHKTLLRILHYPPMTG-DEEMG 167

Query: 191 RVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRFR 250
            +    H D  ++T+L + N  G Q++  DG W+ VP D     + +GD LQ  ++G F 
Sbjct: 168 AIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDMLQEASDGYFP 227

Query: 251 SVRHRAI----TNSLNSRMSMVYFGAPPLDAWIT 280
           S  HR I    T+   SR+S+  F  P     ++
Sbjct: 228 STSHRVINPEGTDKTKSRISLPLFLHPHPSVVLS 261
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 94.45
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 90.4
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 87.25
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 85.77
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 85.6
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=6.3e-73  Score=521.62  Aligned_cols=288  Identities=23%  Similarity=0.349  Sum_probs=251.5

Q ss_pred             CCCCCceEeCCCc--ccHHHHHHHHHHHHhccEEEEEecCCCHHHHHHHHHHhhhhcCCCHHHHhhcCC--CCCCCCccC
Q 048702           15 RAVGVPTIDLSLE--NKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQRAGP--ACPLGYGSR   90 (329)
Q Consensus        15 ~~~~iPvIDls~~--~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~--~~~~Gy~~~   90 (329)
                      +..+||||||+.+  .+.+++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++..  ...+||...
T Consensus         3 ~~~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~   82 (312)
T 3oox_A            3 STSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPF   82 (312)
T ss_dssp             -CCSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEECC
T ss_pred             CCCCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCccccccc
Confidence            3578999999975  367889999999999999999999999999999999999999999999999964  245788643


Q ss_pred             CCC---CCCCCCchhhhcccCCCc--c---hhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhH
Q 048702           91 NIG---FNGDSGELEYLLLHANPT--S---IAERSKTISNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFS  162 (329)
Q Consensus        91 ~~~---~~~~~~~~e~~~~~~~~~--~---~~~~~~~wp~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~  162 (329)
                      +..   .....||+|.|.++....  .   ....+|.||+.+|+||+.+++|+++|.+|+.+|+++||++||++ +++|.
T Consensus        83 g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~-~~~f~  161 (312)
T 3oox_A           83 GVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLE-RDFFK  161 (312)
T ss_dssp             CCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-TTTTH
T ss_pred             cceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-HHHHH
Confidence            322   124568889888754211  1   11236899998999999999999999999999999999999998 88999


Q ss_pred             HhhhCCCCcceeEEeeeCCCCCCCCCCCccccccccCCCceEEEeeCCCCcceEEecCCceEeCCCCCCeEEEEecchhh
Q 048702          163 RLIRDVHSDSILRLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQ  242 (329)
Q Consensus       163 ~~~~~~~~~~~lrl~~Ypp~~~~~~~~~~~~~~~HtD~~~lTlL~qd~~~GLqv~~~~g~W~~v~~~~~~~vVn~Gd~l~  242 (329)
                      +.+.  .+.+.||++||||++..+  . .+|+++|||+|+||||+||.++||||++++|+|++|+|.||++|||+||+|+
T Consensus       162 ~~~~--~~~~~lr~~~Ypp~~~~~--~-~~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~W~~V~p~pg~~vVNiGD~l~  236 (312)
T 3oox_A          162 PTVQ--DGNSVLRLLHYPPIPKDA--T-GVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDMLE  236 (312)
T ss_dssp             HHHT--TCCCEEEEEEECCCSSCC--C---CEEEECCCSSEEEEECCTTSCEEEECTTSCEEECCCCSSCEEEEECHHHH
T ss_pred             HHhc--CCcceeeeEecCCCCCCc--C-CcCccceecCceEEEEeEcCcCceEEECCCCcEEECCCCCCeEEEEhHHHHH
Confidence            8874  356899999999997653  2 3999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCceeccccccccCC----CCceEEEEeeeCCCCCCeEecCccccCCCCCCCCC-ccCHHHHHHHHHh
Q 048702          243 VLTNGRFRSVRHRAITNS----LNSRMSMVYFGAPPLDAWITSLPETVSLQRPSLYM-PFTWGEYKKAVYS  308 (329)
Q Consensus       243 ~~T~g~~~a~~HRV~~~~----~~~R~S~~~F~~p~~d~~i~pl~~~~~~~~~~~~~-~~~~~e~~~~~~~  308 (329)
                      +||||+|+||.|||+.+.    ..+|||++||++|+.|++|.|+++++.+++|++|+ ++|++||+..+++
T Consensus       237 ~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~  307 (312)
T 3oox_A          237 RLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLR  307 (312)
T ss_dssp             HHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHH
T ss_pred             HHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCCCCcccCCCCeeHHHHHHHHHH
Confidence            999999999999998753    56799999999999999999999999999999999 9999999998776
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 329
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-63
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 8e-58
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-46
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 4e-40
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  201 bits (512), Expect = 1e-63
 Identities = 78/310 (25%), Positives = 132/310 (42%), Gaps = 16/310 (5%)

Query: 19  VPTIDLSL---ENKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVRE 75
            P I L       +   ++ I  ACE +GFF++ NHG+PRE++  +E      + K + +
Sbjct: 3   FPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQ 62

Query: 76  KQRAGPACPLGYGSRNIGFNGDSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYV 135
           + +   A     G +    + D     +L               + +   ++     D+ 
Sbjct: 63  RFKELVASKALEGVQAEVTDMDWESTFFL-----KHLPISNISEVPDLDEEYREVMRDFA 117

Query: 136 HAVRGLTCEILDLAAEGLGVRDRFVFSRLIRDVHSDSILRLNHYPPVEDWDPHNSRVGFG 195
             +  L  E+LDL  E LG+   ++ +        +   ++++YPP    D      G  
Sbjct: 118 KRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLI---KGLR 174

Query: 196 DHSDPQILTLLRSNNVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRFRSVRHR 255
            H+D   + LL  ++       L DG W+ VPP      V +GD L+V+TNG+++SV HR
Sbjct: 175 AHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHR 234

Query: 256 AITNSLNSRMSMVYFGAPPLDAWITSLPETV---SLQRPSLYMPFTWGEYKKAVYSLRL- 311
            I     +RMS+  F  P  DA I   P  V   + +   +Y  F + +Y K    L+  
Sbjct: 235 VIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQ 294

Query: 312 -GESRLDLFK 320
             E R +  K
Sbjct: 295 AKEPRFEAMK 304
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 90.67
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=2e-69  Score=496.12  Aligned_cols=294  Identities=27%  Similarity=0.451  Sum_probs=250.1

Q ss_pred             CCCceEeCCCc---ccHHHHHHHHHHHHhccEEEEEecCCCHHHHHHHHHHhhhhcCCCHHHHhhcCC--CCCCCCccCC
Q 048702           17 VGVPTIDLSLE---NKELLIKQIVSACEEYGFFKVTNHGVPREIISRLEDEGVDFFDKPVREKQRAGP--ACPLGYGSRN   91 (329)
Q Consensus        17 ~~iPvIDls~~---~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~--~~~~Gy~~~~   91 (329)
                      .+||||||+.+   ++.+++++|++||+++|||||+||||+.++++++++.+++||++|.|+|+++..  ....||..  
T Consensus         1 ~~lPvIDl~~~~~~~r~~~~~~l~~A~~~~GFF~l~nHGI~~~li~~~~~~~~~fF~lp~e~K~k~~~~~~~~~g~~~--   78 (307)
T d1w9ya1           1 ENFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQA--   78 (307)
T ss_dssp             CCCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred             CCCCeEECcccCCcCHHHHHHHHHHHHHcCeEEEEEcCCCCHHHHHHHHHHHHHHHhCcHHHhhhhhcCCCCCcCccc--
Confidence            37999999985   367889999999999999999999999999999999999999999999998742  23456643  


Q ss_pred             CCCCCCCCchhhhcccCCCcchhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhHHhhh-CCCC
Q 048702           92 IGFNGDSGELEYLLLHANPTSIAERSKTISNDPLKFSRAANDYVHAVRGLTCEILDLAAEGLGVRDRFVFSRLIR-DVHS  170 (329)
Q Consensus        92 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~wp~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~-~~~~  170 (329)
                        ...+.++.|.+.+...+.   ...+.||+.++.||+.+++|+++|.+|+.+|+++|+++||++ +++|.+.+. ....
T Consensus        79 --~~~~~d~~e~~~~~~~~~---~~~~~~~~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~-~~~f~~~~~~~~~~  152 (307)
T d1w9ya1          79 --EVTDMDWESTFFLKHLPI---SNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLE-KGYLKNAFYGSKGP  152 (307)
T ss_dssp             --CGGGCCCCEEEEEEEESC---CGGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-TTHHHHHHHTTTCC
T ss_pred             --cccccChhhhcccccccc---cCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHhhhhccccc
Confidence              223467778776643332   235678899999999999999999999999999999999998 788888763 2345


Q ss_pred             cceeEEeeeCCCCCCCCCCCccccccccCCCceEEEeeC-CCCcceEEecCCceEeCCCCCCeEEEEecchhhHhhCCce
Q 048702          171 DSILRLNHYPPVEDWDPHNSRVGFGDHSDPQILTLLRSN-NVGGFQIRLNDGLWVPVPPDPTGFYVLVGDALQVLTNGRF  249 (329)
Q Consensus       171 ~~~lrl~~Ypp~~~~~~~~~~~~~~~HtD~~~lTlL~qd-~~~GLqv~~~~g~W~~v~~~~~~~vVn~Gd~l~~~T~g~~  249 (329)
                      .+.+|++||||++.+   ....|+++|||+|+||||+|+ .++||||. ++|+|++|+|.+|++|||+||+|++||||+|
T Consensus       153 ~~~lr~~~YP~~~~~---~~~~g~~~HtD~~~lTlL~q~~~~ggl~~~-~~g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~  228 (307)
T d1w9ya1         153 NFGTKVSNYPPCPKP---DLIKGLRAHTDAGGIILLFQDDKVSGLQLL-KDGQWIDVPPMRHSIVVNLGDQLEVITNGKY  228 (307)
T ss_dssp             EEEEEEEECCCCSCG---GGGSSCCCBCCSSSEEEEEESSSCCCEEEE-ETTEEEECCCCTTCEEEEECHHHHHHTTTSS
T ss_pred             cccceecCCCCCccc---ccccccccccccceeEEeeccCCCCeEEEe-cCCcEEEeccCCCeEEEEcchhhHHhhCCcc
Confidence            789999999999764   346789999999999999996 57889986 5899999999999999999999999999999


Q ss_pred             eccccccccCCCCceEEEEeeeCCCCCCeEecCccccC---CCCCCCCCccCHHHHHHHHHhcccCcc--cccccccc
Q 048702          250 RSVRHRAITNSLNSRMSMVYFGAPPLDAWITSLPETVS---LQRPSLYMPFTWGEYKKAVYSLRLGES--RLDLFKIR  322 (329)
Q Consensus       250 ~a~~HRV~~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~---~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~  322 (329)
                      +||.|||+.+.+.+||||+||++|+.|++|+|++++++   .++|++|+|+|++||++.+++++++.+  +|+.||-.
T Consensus       229 kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~~~~~p~~y~~~t~~ey~~~~~~~~~~~~~~~~~~~~~~  306 (307)
T d1w9ya1         229 KSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMKAM  306 (307)
T ss_dssp             CCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHHHHHHHHHHC
T ss_pred             cCcCceeecCCCCCcEEEEEEeeCCCCCEEeCCHHHhcccCccCCCCCCCeeHHHHHHHHHhccCCcccHHHHHhhcc
Confidence            99999999988889999999999999999999999986   457899999999999999888888753  47777654
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure