Citrus Sinensis ID: 048720

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MVLLLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK
Secondary Structure (PSIPRED)
cEEEEEEEcEEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEEEEEEEEEccEEEEEEEEEEEccccEEEEEEEEEcccccEEEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEcEEEEEEEEEEcccccEEEEEEEEEEccHcHHEHEEcccccccccccccccccc
Coil and Loop (DISEMBL)
MVLLLLLQGVydygsnrknadveGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKSWNKFKQLWEfkhtkhgpfsnlsnlnvk
Flexible Loop (DISEMBL)
MVLLLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKSWNKFKQLWEfkhtkhgpfsnlsnlnvk
Low Complexity Region (SEG)
MVLLLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK
Disordered region (IsUnstruct)
*VLLLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTK*************
Disordered Region (DISOPRED)
**LLLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSN**NLN**
Disordered Region (DISEMBL)
MVLLLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK
Disordered Region (DISPRO)
MV***LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKSWNKFKQLWEFKHT**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLLLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
Q8H0X6	234	Cysteine proteinase inhib	no	no	0.972	0.452	0.490	3e-22
Q0JNR2	250	Cysteine proteinase inhib	yes	no	0.926	0.404	0.427	9e-19
Q06445	97	Cysteine proteinase inhib	N/A	no	0.880	0.989	0.437	3e-18
Q8LC76	232	Cysteine proteinase inhib	no	no	0.798	0.375	0.539	4e-18
Q41906	125	Cysteine proteinase inhib	no	no	0.834	0.728	0.439	4e-17
P31726	135	Cystatin-1 OS=Zea mays GN	N/A	no	0.862	0.696	0.425	1e-15
Q945Q1	101	Cysteine proteinase inhib	no	no	0.816	0.881	0.415	9e-15
Q10992	82	Cysteine proteinase inhib	N/A	no	0.669	0.890	0.506	2e-14
Q6I570	184	Cysteine proteinase inhib	no	no	0.715	0.423	0.461	4e-14
P09229	140	Cysteine proteinase inhib	no	no	0.798	0.621	0.454	3e-13

>sp|Q8H0X6|CYT6_ARATH Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 71/106 (66%)

Query: 4   LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFIL 63
           + L+ GV D  +N+ + +VE    F++ EHNKKENALLEFARV+KAK QVVAG L+   L
Sbjct: 34  MALVGGVGDVPANQNSGEVESLARFAVDEHNKKENALLEFARVVKAKEQVVAGTLHHLTL 93

Query: 64  QVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
           ++++  +KK+YEAK+ VK W  FK+L EFK     P    S+L  K
Sbjct: 94  EILEAGQKKLYEAKVWVKPWLNFKELQEFKPASDAPAITSSDLGCK 139

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0JNR2|CYT12_ORYSJ Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 6   LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
           +L G +D  S   + + +    F++ EHNK+ENALLEF RV++AK QVVAG L+   L+ 
Sbjct: 47  VLGGAHDAPSAANSVETDALARFAVDEHNKRENALLEFVRVVEAKEQVVAGTLHHLTLEA 106

Query: 66  IKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNV 108
           ++  +KK+YEAK+ VK W  FK+L EF++T  G  +  +N ++
Sbjct: 107 LEAGRKKVYEAKVWVKPWLDFKELQEFRNT--GDATTFTNADL 147

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q06445|CYTI_VIGUN Cysteine proteinase inhibitor OS=Vigna unguiculata PE=3 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 60/96 (62%)

Query: 4  LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFIL 63
          +  L G  D   N+ + +++    F+++EHNKK+NALLEF RV+ A+ QVV+G LY   L
Sbjct: 1  MAALGGNRDVAGNQNSLEIDSLARFAVEEHNKKQNALLEFGRVVSAQQQVVSGTLYTITL 60

Query: 64 QVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGP 99
          +     +KK+YEAK+  K W  FK+L EFKH    P
Sbjct: 61 EAKDGGQKKVYEAKVWEKPWLNFKELQEFKHVGDAP 96

Vigna unguiculata (taxid: 3917)

>sp|Q8LC76|CYT7_ARATH Cysteine proteinase inhibitor 7 OS=Arabidopsis thaliana GN=CYS7 PE=2 SV=2

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 63/89 (70%), Gaps = 2/89 (2%)

Query: 21  DVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISV 80
           +++    F++QEHN++ENA+LE ARVLKA  QVVAGKLY   L+VI+  +KKIYEAK+ V
Sbjct: 60  EIDDIALFAVQEHNRRENAVLELARVLKATEQVVAGKLYRLTLEVIEAGEKKIYEAKVWV 119

Query: 81  KSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
           K W  FKQL EFK+    P   +S+L  K
Sbjct: 120 KPWMNFKQLQEFKNII--PSFTISDLGFK 146

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41906|CYT3_ARATH Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana GN=CYS3 PE=2 SV=2

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 62/91 (68%)

Query: 5   LLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQ 64
           ++L GV+D   N+ + ++E    F+IQEHNK++N +LEF +++KA+ QVVAG +Y   L+
Sbjct: 33  MMLGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLE 92

Query: 65  VIKNVKKKIYEAKISVKSWNKFKQLWEFKHT 95
             +  + K +EAK+ VK W  FKQL EFK +
Sbjct: 93  AKEGDQTKNFEAKVWVKPWMNFKQLQEFKES 123

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|P31726|CYT1_MAIZE Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 58/94 (61%)

Query: 5   LLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQ 64
           +L  G+ D  +N  +  ++    F++ EHN+K NALL F +++KAK QVVAG +Y   ++
Sbjct: 39  MLAGGIKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGTMYYLTIE 98

Query: 65  VIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHG 98
           V     KK+YEAK+  K W  FKQL EFK  + G
Sbjct: 99  VKDGEVKKLYEAKVWEKPWENFKQLQEFKPVEEG 132

Zea mays (taxid: 4577)

>sp|Q945Q1|CYT1_ARATH Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 52/89 (58%)

Query: 6  LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
          ++ GV D  +N  +  VE    F++ EHNK EN  LE+ R+L AK QVVAG ++   ++V
Sbjct: 9  IVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEV 68

Query: 66 IKNVKKKIYEAKISVKSWNKFKQLWEFKH 94
                K+YEAK+  K+W   KQL  F H
Sbjct: 69 ADGETNKVYEAKVLEKAWENLKQLESFNH 97

Involved in suppression of hypersensitive cell death activated by either avirulent pathogen or oxidative stress.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10992|CYTA_HELAN Cysteine proteinase inhibitor A OS=Helianthus annuus PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 49/73 (67%)

Query: 21 DVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISV 80
          +++    F++ EHNKK+NALLEF +V+  K QVVAGK+Y   L+      KK YEAK+ V
Sbjct: 3  EIDELARFAVDEHNKKQNALLEFGKVVNTKEQVVAGKMYYITLEATNGGVKKTYEAKVWV 62

Query: 81 KSWNKFKQLWEFK 93
          K W  FK+L EFK
Sbjct: 63 KPWENFKELQEFK 75

Strong inhibitor of papain and ficin but poor inhibitor of cathepsin H, B and L.

Helianthus annuus (taxid: 4232)

>sp|Q6I570|CYT3_ORYSJ Cysteine proteinase inhibitor 3 OS=Oryza sativa subsp. japonica GN=Os05g0409300 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 53/78 (67%)

Query: 17  RKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEA 76
           R+ A+ E    F++ E+NK + A LEFAR++KAK QVV G L+  +L+V+ + KK +Y A
Sbjct: 55  REQAEAEDAARFAVAEYNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSA 114

Query: 77  KISVKSWNKFKQLWEFKH 94
           K+ VK W  FK + EF+H
Sbjct: 115 KVWVKPWLDFKAVVEFRH 132

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P09229|CYT1_ORYSJ Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 6   LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
           +L GV   G N  +  +     F++ EHNKK N+LLEF +++  K QVVAG LY F ++V
Sbjct: 46  VLGGVEPVG-NENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEV 104

Query: 66  IKNVKKKIYEAKISVKSWNKFKQLWEFK 93
            +   KK+YEAK+  K W  FK+L EFK
Sbjct: 105 KEGDAKKLYEAKVWEKPWMDFKELQEFK 132

There are two distinct cystatins in rice seeds (Oryzacystatin-1 and -2) with different specificities against cysteine proteinases. May be involved in the control of germination by inhibition of endogenous cysteine proteinases. May play a role in defense by inhibiting exogenous proteases such as those present in digestive tracks of insects and nematodes.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
225440171	234	PREDICTED: cysteine proteinase inhibitor	0.954	0.444	0.548	5e-22
297741695	201	unnamed protein product [Vitis vinifera]	0.954	0.517	0.548	6e-22
52851108	143	cysteine protease inhibitor [Populus tre	0.972	0.741	0.490	8e-22
52851056	143	cysteine protease inhibitor [Populus tre	0.972	0.741	0.490	1e-21
52851096	143	cysteine protease inhibitor [Populus tre	0.972	0.741	0.490	2e-21
52851072	143	cysteine protease inhibitor [Populus tre	0.972	0.741	0.5	2e-21
52851092	143	cysteine protease inhibitor [Populus tre	0.972	0.741	0.490	2e-21
52851062	143	cysteine protease inhibitor [Populus tre	0.972	0.741	0.490	2e-21
52851114	143	cysteine protease inhibitor [Populus tre	0.972	0.741	0.490	3e-21
52851070	143	cysteine protease inhibitor [Populus tre	0.972	0.741	0.490	3e-21

>gi|225440171|ref|XP_002283400.1| PREDICTED: cysteine proteinase inhibitor 12-like [Vitis vinifera]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 72/104 (69%)

Query: 6   LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
           LL GV D G  + +A++E    F++QEHNK +NALLEFA+VLKAK QVVAGK+Y   L+ 
Sbjct: 36  LLGGVRDCGGIQNSAEIESIARFAVQEHNKNQNALLEFAKVLKAKEQVVAGKIYYLTLEA 95

Query: 66  IKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
           I   KKKIYEAK+ VK W  FK+L EFKH++       S+L VK
Sbjct: 96  IDAGKKKIYEAKVWVKPWMNFKELQEFKHSQETKSFAPSDLGVK 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741695|emb|CBI32827.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 72/104 (69%)

Query: 6   LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
           LL GV D G  + +A++E    F++QEHNK +NALLEFA+VLKAK QVVAGK+Y   L+ 
Sbjct: 3   LLGGVRDCGGIQNSAEIESIARFAVQEHNKNQNALLEFAKVLKAKEQVVAGKIYYLTLEA 62

Query: 66  IKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
           I   KKKIYEAK+ VK W  FK+L EFKH++       S+L VK
Sbjct: 63  IDAGKKKIYEAKVWVKPWMNFKELQEFKHSQETKSFAPSDLGVK 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52851108|emb|CAH57557.1| cysteine protease inhibitor [Populus tremula]

 Score =  107 bits (268), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 73/106 (68%)

Query: 4   LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFIL 63
           +  L GV+D  S++ +A+++G   F++ EHNKKENA+LEFARV+KAK QVVAG ++   +
Sbjct: 36  MATLGGVHDSQSSQNSAEIDGLARFAVDEHNKKENAILEFARVVKAKEQVVAGTMHHLTI 95

Query: 64  QVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
           + I+  KKK+YEAK+ VK W  FK+L EFK     P    S+L VK
Sbjct: 96  EAIEAGKKKLYEAKVWVKPWLNFKELHEFKDASDAPVFTSSDLGVK 141

Source: Populus tremula

Species: Populus tremula

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52851056|emb|CAH57531.1| cysteine protease inhibitor [Populus tremula]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 72/106 (67%)

Query: 4   LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFIL 63
           +  L GV D  S++ +A+++G   F++ EHNKKENA+LEFARV+KAK QVVAG ++   +
Sbjct: 36  MATLGGVQDSQSSQNSAEIDGLARFAVDEHNKKENAILEFARVVKAKEQVVAGTMHHLTI 95

Query: 64  QVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
           + I+  KKK+YEAK+ VK W  FK+L EFK     P    S+L VK
Sbjct: 96  EAIEAGKKKLYEAKVRVKPWLNFKELHEFKDASDVPVFTSSDLGVK 141

Source: Populus tremula

Species: Populus tremula

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52851096|emb|CAH57551.1| cysteine protease inhibitor [Populus tremula]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 73/106 (68%)

Query: 4   LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFIL 63
           +  L GV+D  S++ +A+++G   F++ EHNKKENA+LEFARV+KAK QVVAG ++   +
Sbjct: 36  MATLGGVHDSQSSQNSAEIDGLARFAVDEHNKKENAMLEFARVVKAKEQVVAGTMHHLTI 95

Query: 64  QVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
           + I+  KKK+YEAK+ VK W  FK+L EFK     P    S+L VK
Sbjct: 96  EAIEAGKKKLYEAKVWVKPWLNFKELHEFKDASDVPVFTSSDLGVK 141

Source: Populus tremula

Species: Populus tremula

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52851072|emb|CAH57539.1| cysteine protease inhibitor [Populus tremula]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 73/106 (68%)

Query: 4   LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFIL 63
           +  L GV+D  S++ +A+++G   F+I EHNKKENA+LEFARV+KAK QVVAG ++   +
Sbjct: 36  MATLGGVHDSQSSQNSAEIDGLARFAIDEHNKKENAILEFARVVKAKEQVVAGTMHHLTI 95

Query: 64  QVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
           + I+  KKK+YEAK+ VK W  FK+L EFK     P    S+L VK
Sbjct: 96  EAIEAGKKKLYEAKVWVKPWLNFKELHEFKDAGDVPVFTSSDLGVK 141

Source: Populus tremula

Species: Populus tremula

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52851092|emb|CAH57549.1| cysteine protease inhibitor [Populus tremula] gi|52851134|emb|CAH57570.1| cysteine protease inhibitor [Populus tremula]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 73/106 (68%)

Query: 4   LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFIL 63
           +  L GV+D  S++ +A+++G   F++ EHNKKENA+LEFARV+KAK QVVAG ++   +
Sbjct: 36  MATLGGVHDSQSSQNSAEIDGLARFAVDEHNKKENAILEFARVVKAKEQVVAGPMHHLTI 95

Query: 64  QVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
           + I+  KKK+YEAK+ VK W  FK+L EFK     P    S+L VK
Sbjct: 96  EAIEAGKKKLYEAKVWVKPWLNFKELHEFKDASDVPVFTSSDLGVK 141

Source: Populus tremula

Species: Populus tremula

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52851062|emb|CAH57534.1| cysteine protease inhibitor [Populus tremula] gi|52851064|emb|CAH57535.1| cysteine protease inhibitor [Populus tremula] gi|52851066|emb|CAH57536.1| cysteine protease inhibitor [Populus tremula] gi|52851098|emb|CAH57552.1| cysteine protease inhibitor [Populus tremula] gi|52851106|emb|CAH57556.1| cysteine protease inhibitor [Populus tremula] gi|52851116|emb|CAH57561.1| cysteine protease inhibitor [Populus tremula] gi|52851124|emb|CAH57565.1| cysteine protease inhibitor [Populus tremula] gi|52851126|emb|CAH57566.1| cysteine protease inhibitor [Populus tremula] gi|52851132|emb|CAH57569.1| cysteine protease inhibitor [Populus tremula] gi|52851144|emb|CAH57575.1| cysteine protease inhibitor [Populus tremula] gi|52851146|emb|CAH57576.1| cysteine protease inhibitor [Populus tremula]

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 73/106 (68%)

Query: 4   LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFIL 63
           +  L GV+D  S++ +A+++G   F++ EHNKKENA+LEFARV+KAK QVVAG ++   +
Sbjct: 36  MATLGGVHDSQSSQNSAEIDGLARFAVDEHNKKENAILEFARVVKAKEQVVAGTMHHLTI 95

Query: 64  QVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
           + I+  KKK+YEAK+ VK W  FK+L EFK     P    S+L VK
Sbjct: 96  EAIEAGKKKLYEAKVWVKPWLNFKELHEFKDASDVPVFTSSDLGVK 141

Source: Populus tremula

Species: Populus tremula

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52851114|emb|CAH57560.1| cysteine protease inhibitor [Populus tremula] gi|52851138|emb|CAH57572.1| cysteine protease inhibitor [Populus tremula]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 73/106 (68%)

Query: 4   LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFIL 63
           +  L GV+D  S++ +A+++G   F++ EHNKKENA+LEFARV+KAK QVVAG ++   +
Sbjct: 36  MTTLGGVHDSQSSQNSAEIDGLARFAVDEHNKKENAILEFARVVKAKEQVVAGTMHHLTI 95

Query: 64  QVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
           + I+  KKK+YEAK+ VK W  FK+L EFK     P    S+L VK
Sbjct: 96  EAIEAGKKKLYEAKVWVKPWLNFKELHEFKDAGDVPVFTSSDLGVK 141

Source: Populus tremula

Species: Populus tremula

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52851070|emb|CAH57538.1| cysteine protease inhibitor [Populus tremula] gi|52851080|emb|CAH57543.1| cysteine protease inhibitor [Populus tremula] gi|52851082|emb|CAH57544.1| cysteine protease inhibitor [Populus tremula] gi|52851110|emb|CAH57558.1| cysteine protease inhibitor [Populus tremula] gi|52851120|emb|CAH57563.1| cysteine protease inhibitor [Populus tremula]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 73/106 (68%)

Query: 4   LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFIL 63
           +  L GV+D  S++ +A+++G   F++ EHNKKENA+LEFARV+KAK QVVAG ++   +
Sbjct: 36  MATLGGVHDSQSSQNSAEIDGLARFAVDEHNKKENAILEFARVVKAKEQVVAGTMHHLTI 95

Query: 64  QVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
           + I+  KKK+YEAK+ VK W  FK+L EFK     P    S+L VK
Sbjct: 96  EAIEAGKKKLYEAKVWVKPWLNFKELHEFKDAGDVPVFTSSDLGVK 141

Source: Populus tremula

Species: Populus tremula

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2092492	234	CYSB "cystatin B" [Arabidopsis	0.972	0.452	0.490	5.5e-22
TAIR|locus:2175294	232	AT5G05110 [Arabidopsis thalian	0.963	0.452	0.490	8.3e-19
TAIR|locus:2058515	125	CYSA "cystatin A" [Arabidopsis	0.834	0.728	0.439	7.5e-18
TAIR|locus:2177063	101	CYS1 "cystatin-1" [Arabidopsis	0.816	0.881	0.415	2.6e-15
UNIPROTKB|Q6TPK4	116	Q6TPK4 "Cysteine proteinase in	0.688	0.646	0.32	7.8e-07
TAIR|locus:2130709	117	AT4G16500 [Arabidopsis thalian	0.715	0.666	0.341	1.1e-05
TAIR|locus:2168973	122	AT5G47550 [Arabidopsis thalian	0.761	0.680	0.333	3e-05
UNIPROTKB|P09228	141	CST2 "Cystatin-SA" [Homo sapie	0.568	0.439	0.333	0.00093

TAIR|locus:2092492 CYSB "cystatin B" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 52/106 (49%), Positives = 71/106 (66%)

Query:     4 LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFIL 63
             + L+ GV D  +N+ + +VE    F++ EHNKKENALLEFARV+KAK QVVAG L+   L
Sbjct:    34 MALVGGVGDVPANQNSGEVESLARFAVDEHNKKENALLEFARVVKAKEQVVAGTLHHLTL 93

Query:    64 QVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
             ++++  +KK+YEAK+ VK W  FK+L EFK     P    S+L  K
Sbjct:    94 EILEAGQKKLYEAKVWVKPWLNFKELQEFKPASDAPAITSSDLGCK 139

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2175294 AT5G05110 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 54/110 (49%), Positives = 71/110 (64%)

Query:     2 VLLLLLQGVYDYGSNRKNA--DVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLY 59
             V+ + L G  D   N  N   +++    F++QEHN++ENA+LE ARVLKA  QVVAGKLY
Sbjct:    40 VVKMKLGGFSD-SKNDWNGGKEIDDIALFAVQEHNRRENAVLELARVLKATEQVVAGKLY 98

Query:    60 CFILQVIKNVKKKIYEAKISVKSWNKFKQLWEFKHTKHGPFSNLSNLNVK 109
                L+VI+  +KKIYEAK+ VK W  FKQL EFK+    P   +S+L  K
Sbjct:    99 RLTLEVIEAGEKKIYEAKVWVKPWMNFKQLQEFKNII--PSFTISDLGFK 146

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2058515 CYSA "cystatin A" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 40/91 (43%), Positives = 62/91 (68%)

Query:     5 LLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQ 64
             ++L GV+D   N+ + ++E    F+IQEHNK++N +LEF +++KA+ QVVAG +Y   L+
Sbjct:    33 MMLGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLE 92

Query:    65 VIKNVKKKIYEAKISVKSWNKFKQLWEFKHT 95
               +  + K +EAK+ VK W  FKQL EFK +
Sbjct:    93 AKEGDQTKNFEAKVWVKPWMNFKQLQEFKES 123

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2177063 CYS1 "cystatin-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 37/89 (41%), Positives = 52/89 (58%)

Query:     6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
             ++ GV D  +N  +  VE    F++ EHNK EN  LE+ R+L AK QVVAG ++   ++V
Sbjct:     9 IVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEV 68

Query:    66 IKNVKKKIYEAKISVKSWNKFKQLWEFKH 94
                   K+YEAK+  K+W   KQL  F H
Sbjct:    69 ADGETNKVYEAKVLEKAWENLKQLESFNH 97

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q6TPK4 Q6TPK4 "Cysteine proteinase inhibitor 1" [Actinidia deliciosa (taxid:3627)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 24/75 (32%), Positives = 39/75 (52%)

Query:    19 NADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKI 78
             +A+V+    F++ EHNK+ N  L++  V++   QVVAG  Y  ++          YEA +
Sbjct:    40 SAEVQDVAQFAVSEHNKQANDELQYQSVVRGYTQVVAGTNYRLVIAAKDGAVVGNYEAVV 99

Query:    79 SVKSWNKFKQLWEFK 93
               K W  F+ L  F+
Sbjct:   100 WDKPWMHFRNLTSFR 114

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IDA

TAIR|locus:2130709 AT4G16500 [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 27/79 (34%), Positives = 38/79 (48%)

Query:    16 NRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKK-KIY 74
             N  + DV     ++I+EHNK+    L F +V++   QVV+G  Y   +       K K Y
Sbjct:    37 NVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTKYDLKIAAKDGGGKIKNY 96

Query:    75 EAKISVKSWNKFKQLWEFK 93
             EA +  K W   K L  FK
Sbjct:    97 EAVVVEKLWLHSKSLESFK 115

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0030234 "enzyme regulator activity" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2168973 AT5G47550 [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 30/90 (33%), Positives = 45/90 (50%)

Query:    15 SNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKN----VK 70
             SN  +  V     F++ E+NK+  + L+F  V+  + QVV+G  Y   L+V  N    V 
Sbjct:    35 SNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVSGTNYR--LKVAANDGDGVS 92

Query:    71 KKIYEAKISVKSWNKFKQLWEFKHTKHGPF 100
             K  Y A +  K W KF+ L  F+   +G F
Sbjct:    93 KN-YLAIVWDKPWMKFRNLTSFEPANNGRF 121

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IDA

UNIPROTKB|P09228 CST2 "Cystatin-SA" [Homo sapiens (taxid:9606)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query:     9 GVYDYGSNRKNADVEGFVHFSIQEHNK--KENALLEFARVLKAKVQVVAGKLYCFILQVI 66
             G+YD   N +   V+  +HF I E+NK  ++       RVL+A+ Q+V G  Y F ++V 
Sbjct:    33 GIYDADLNDER--VQRALHFVISEYNKATEDEYYRRLLRVLRAREQIVGGVNYFFDIEVG 90

Query:    67 KNVKKK 72
             + +  K
Sbjct:    91 RTICTK 96


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109       109   0.00091  102 3  11 22  0.42    30
                                                     29  0.41    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  128 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.94u 0.13s 12.07t   Elapsed:  00:00:01
  Total cpu time:  11.94u 0.13s 12.07t   Elapsed:  00:00:01
  Start:  Sat May 11 16:20:40 2013   End:  Sat May 11 16:20:41 2013

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
cd00042	105	cd00042, CY, Cystatin-like domain; Cystatins are a	2e-09
smart00043	107	smart00043, CY, Cystatin-like domain	9e-09
pfam00031	92	pfam00031, Cystatin, Cystatin domain	3e-06

>gnl|CDD|238002 cd00042, CY, Cystatin-like domain; Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins

 Score = 50.2 bits (120), Expect = 2e-09
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 20/96 (20%)

Query: 19  NADVEGFVHFSIQEHNKKENAL-LEFARVLKAKVQVVAGKLYCFILQV------------ 65
           + +V+    F++ E+NKK N   LEF +VL AK QVVAG  Y   ++             
Sbjct: 10  DPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGDTNCKKSSVPL 69

Query: 66  -------IKNVKKKIYEAKISVKSWNKFKQLWEFKH 94
                  ++  KKK   AK+  K W  FK+L  FK 
Sbjct: 70  DCPDCKLLEEGKKKFCTAKVWEKPWENFKELLSFKC 105

However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 105

>gnl|CDD|214484 smart00043, CY, Cystatin-like domain

 Score = 48.6 bits (116), Expect = 9e-09
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 16  NRKNADVEGFVHFSIQEHNKKENALLEFA--RVLKAKVQVVAGKLYCFILQVIK-NVKKK 72
              + +V+    F++ E+NKK N   E    +V+ AK QVVAG  Y   ++V + N KK 
Sbjct: 10  PPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKVEVGETNCKKL 69

Query: 73  ---------------IYEAKISVKSWNKFKQLWEFKHT 95
                             AK+  K W    +L EFK T
Sbjct: 70  SVDLENCPFLDQGEKFCTAKVWEKPWENKIKLVEFKCT 107

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 107

>gnl|CDD|215667 pfam00031, Cystatin, Cystatin domain

 Score = 41.5 bits (98), Expect = 3e-06
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 16 NRKNADVEGFVHFSIQEHNKKENA-LLEFARVLKAKVQVVAGKLYCFILQVIKN---VKK 71
          N  + +V+  + F++ ++N K N    E   VL+AK QVVAG  Y   ++V +      K
Sbjct: 7  NDNDPEVQEALDFALAKYNAKSNNYYFELVEVLRAKSQVVAGMNYYIKVEVGETNCSKSK 66

Query: 72 KIYEAKISVKS-WNKFKQLWEFK 93
          K  E    +      F +   FK
Sbjct: 67 KDLEDCPLLDEKQEGFCKAQVFK 89

Very diverse family. Attempts to define separate sub-families failed. Typically, either the N-terminal or C-terminal end is very divergent. But splitting into two domains would make very short families. pfam00666 are related to this family but have not been included. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
cd00042	105	CY Substituted updates: Jan 30, 2002	99.91
smart00043	107	CY Cystatin-like domain. Cystatins are a family of	99.91
PF00031	94	Cystatin: Cystatin domain; InterPro: IPR000010 Pep	99.86
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	99.66
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	99.16
TIGR01638	92	Atha_cystat_rel Arabidopsis thaliana cystatin-rela	99.04
PF06907	220	Latexin: Latexin; InterPro: IPR009684 This family	96.34
TIGR01572	265	A_thl_para_3677 Arabidopsis paralogous family TIGR	94.68
PF05679	499	CHGN: Chondroitin N-acetylgalactosaminyltransferas	82.25

>cd00042 CY Substituted updates: Jan 30, 2002

Probab=99.91  E-value=9.4e-24  Score=138.57  Aligned_cols=85  Identities=40%  Similarity=0.573  Sum_probs=79.2

Q ss_pred             cceeecCCCCCCHHHHHHHHHHHHHHHhhcCCc-eeEEEEEEEEEEeeeeEeEEEEEEEeeC------------------
Q 048720            8 QGVYDYGSNRKNADVEGFVHFSIQEHNKKENAL-LEFARVLKAKVQVVAGKLYCFILQVIKN------------------   68 (109)
Q Consensus         8 GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~-~~~~kVv~a~~QVVaG~nY~l~v~~~~~------------------   68 (109)
                      |||.++  +.+||++++++++|+.+||+.+++. +++.+|++|++|||+|++|+|+|++.++                  
T Consensus         1 gg~~~~--~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~i~~~~~QvvaG~~y~i~~~~~~t~C~k~~~~~~~~~c~~~~   78 (105)
T cd00042           1 GGPSDI--PANDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGDTNCKKSSVPLDCPDCKLLE   78 (105)
T ss_pred             CCCccC--CCCCHHHHHHHHHHHHHHHhhcCccceeEEEEEEEEEEEEeeeEEEEEEEEecccccccCcccccccccccc
Confidence            899988  5899999999999999999999887 8999999999999999999999999874                  


Q ss_pred             -ceeeEEEEEEEEecCCCceeEEEEEe
Q 048720           69 -VKKKIYEAKISVKSWNKFKQLWEFKH   94 (109)
Q Consensus        69 -~~~~~y~~~Vw~~PW~~~~~l~~f~~   94 (109)
                       +....|.+.||.+||+++.+|++|.|
T Consensus        79 ~~~~~~C~~~V~~~pw~~~~~l~~~~C  105 (105)
T cd00042          79 EGKKKFCTAKVWEKPWENFKELLSFKC  105 (105)
T ss_pred             cCCCEEEEEEEEecCCCCceeeeeccC
Confidence             35789999999999999999999876

>smart00043 CY Cystatin-like domain

Probab=99.91  E-value=1.9e-24  Score=142.40  Aligned_cols=87  Identities=36%  Similarity=0.446  Sum_probs=79.8

Q ss_pred             cccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCcee--EEEEEEEEEEeeeeEeEEEEEEEeeCcee------------
Q 048720            6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLE--FARVLKAKVQVVAGKLYCFILQVIKNVKK------------   71 (109)
Q Consensus         6 ~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~~--~~kVv~a~~QVVaG~nY~l~v~~~~~~~~------------   71 (109)
                      ++|||+++  +.+||++++++++|+++||+++++.+.  +++|++|++|||+|++|+|+|++.++...            
T Consensus         2 ~~Gg~~~~--~~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~~v~~a~~QvvaG~~y~l~~~v~~t~C~k~~~~~~~C~~~   79 (107)
T smart00043        2 CLGGPSDV--PPNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKVEVGETNCKKLSVDLENCPFL   79 (107)
T ss_pred             CCCCCccC--CCCCHHHHHHHHHHHHHHHHhcccchhhhhhhhheeeeeeecceEEEEEEEEEeceeccCCcccccCCCC
Confidence            68999999  588999999999999999999988776  79999999999999999999999986543            


Q ss_pred             ----eEEEEEEEEecCCCceeEEEEEe
Q 048720           72 ----KIYEAKISVKSWNKFKQLWEFKH   94 (109)
Q Consensus        72 ----~~y~~~Vw~~PW~~~~~l~~f~~   94 (109)
                          ..|.++||.+||+++.++++|+|
T Consensus        80 ~~~~~~C~~~V~~~pw~~~~~~~~~~C  106 (107)
T smart00043       80 DQGEKFCTAKVWEKPWENKIKLVEFKC  106 (107)
T ss_pred             CCCccEEEEEEEecCCCCccCccceec
Confidence                38999999999999999999987

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.

>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.86  E-value=8.1e-21  Score=122.22  Aligned_cols=74  Identities=22%  Similarity=0.385  Sum_probs=66.7

Q ss_pred             cceeecCCCCCCHHHHHHHHHHHHHHHhhcCC--ceeEEEEEEEEEEeeeeEeEEEEEEEeeC-----------------
Q 048720            8 QGVYDYGSNRKNADVEGFVHFSIQEHNKKENA--LLEFARVLKAKVQVVAGKLYCFILQVIKN-----------------   68 (109)
Q Consensus         8 GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~--~~~~~kVv~a~~QVVaG~nY~l~v~~~~~-----------------   68 (109)
                      |||+++  +++||+++++|++|+.+||+++++  .|++.+|++|++|||+|++|+|+|.+.++                 
T Consensus         1 Gg~~~~--~~~dp~v~~~~~~al~~~N~~~~~~~~~~~~~v~~a~~QvV~G~~Y~i~~~~~~t~C~k~~~~~~~C~~~~~   78 (94)
T PF00031_consen    1 GGPSPV--DPNDPEVQEAAEFALDKFNEQSNSGYKFKLVKVISATTQVVAGINYYIEFEVGETNCKKSSKDFENCPFQEE   78 (94)
T ss_dssp             SSEEEE--CTTSHHHHHHHHHHHHHHHHHSTTSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETCEEEEEECEBEST
T ss_pred             CCCccC--CCCCHHHHHHHHHHHHHHHHhCcccCcceeeeeeEEEEeecCCceEEEEEEEEcccccccccccccCCcccc
Confidence            899999  589999999999999999999855  47889999999999999999999999874                 


Q ss_pred             -ceeeEEEEEEEEecC
Q 048720           69 -VKKKIYEAKISVKSW   83 (109)
Q Consensus        69 -~~~~~y~~~Vw~~PW   83 (109)
                       .....|.++||.+||
T Consensus        79 ~~~~~~C~~~v~~~pW   94 (94)
T PF00031_consen   79 QPWTKFCKFTVWERPW   94 (94)
T ss_dssp             TSSEEEEEEEEEEECG
T ss_pred             CCceeeEEEEEEECCC
Confidence             235689999999998

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=99.66  E-value=1.5e-15  Score=109.58  Aligned_cols=83  Identities=23%  Similarity=0.205  Sum_probs=72.8

Q ss_pred             cccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeee--eEeEEEEEEEeeC-ceeeEEEEEEEEe-
Q 048720            6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVA--GKLYCFILQVIKN-VKKKIYEAKISVK-   81 (109)
Q Consensus         6 ~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVa--G~nY~l~v~~~~~-~~~~~y~~~Vw~~-   81 (109)
                      ...+|.+++ |+++|.+|++++|||.||| +.+++++|.+|.+++.|=++  |++|+|++.+.|+ ++...|+|.||++ 
T Consensus       113 ~~~~Wi~I~-nin~p~VQeLgkFAV~EhN-K~gd~LkF~KV~eGw~q~l~~d~ikYrLhI~AkDg~G~~~~YeAvV~~k~  190 (202)
T PF07430_consen  113 QSKKWIPIP-NINNPFVQELGKFAVIEHN-KAGDKLKFEKVYEGWYQDLGNDGIKYRLHIVAKDGLGRLGNYEAVVWEKQ  190 (202)
T ss_pred             ccCCCEECC-CCCcHHHHHHHHHHHHHHh-hcCCceEEEEEeeEEEEeccCCCceEEEEEEeecCCCCcCceEEEEEEec
Confidence            345799997 7999999999999999999 67889999999999999885  6999999999997 8889999999999 


Q ss_pred             cCCCceeEE
Q 048720           82 SWNKFKQLW   90 (109)
Q Consensus        82 PW~~~~~l~   90 (109)
                      +|.+...+.
T Consensus       191 ~~sk~i~i~  199 (202)
T PF07430_consen  191 FLSKKIKIL  199 (202)
T ss_pred             cCcceEEEE
Confidence            566644443

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=99.16  E-value=5.4e-11  Score=86.10  Aligned_cols=89  Identities=13%  Similarity=0.146  Sum_probs=80.8

Q ss_pred             cccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEE--EEeeeeEeEEEEEEEee-CceeeEEEEEEEEec
Q 048720            6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAK--VQVVAGKLYCFILQVIK-NVKKKIYEAKISVKS   82 (109)
Q Consensus         6 ~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~--~QVVaG~nY~l~v~~~~-~~~~~~y~~~Vw~~P   82 (109)
                      ..+||.+++ |..+|.+|.++.|||.+++.+.++.|+|..|++++  .|.+.+++|||.+++.| -+..-.|++.|+++-
T Consensus         6 ~~~~w~~ip-~v~~~~~q~v~~~~veq~k~~~~~~l~~~~v~egwy~el~~~~~~yrlhv~a~d~l~r~l~~e~ii~e~~   84 (202)
T PF07430_consen    6 FSPKWIKIP-DVKEPCLQEVAKFAVEQFKIQYGDSLKFRSVVEGWYFELCPNSLKYRLHVKAIDFLGRSLKYEAIIIEEK   84 (202)
T ss_pred             cCcccccCC-cccchHHHHHHHHHHHHHhhhcccceeeeeeeeceeecccccceeEEEeehhhhhhccccceeeeeeehh
Confidence            468999998 79999999999999999999999999999999999  67889999999999987 567788999999995


Q ss_pred             --CCCceeEEEEEec
Q 048720           83 --WNKFKQLWEFKHT   95 (109)
Q Consensus        83 --W~~~~~l~~f~~~   95 (109)
                        |++.++|.+|-..
T Consensus        85 ~~~~~~~kl~s~l~~   99 (202)
T PF07430_consen   85 PQLTRIRKLASILAI   99 (202)
T ss_pred             hhhhhhhhhheeeEE
Confidence              9999999987543

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein

Probab=99.04  E-value=2.4e-09  Score=69.55  Aligned_cols=65  Identities=12%  Similarity=0.051  Sum_probs=56.5

Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeEeEEEEEEEeeC---ceeeEEEEEEEEe
Q 048720           17 RKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKN---VKKKIYEAKISVK   81 (109)
Q Consensus        17 ~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~nY~l~v~~~~~---~~~~~y~~~Vw~~   81 (109)
                      .+.+-++.++..|+++||+..+.+++|++|++|..|..+|++|+|||.+.|.   ...+.|++.||..
T Consensus        10 T~rd~~~~la~~al~k~N~~~~t~lEfV~vVrAn~~~~~g~~~yITF~Ard~~d~p~~e~~q~~v~~~   77 (92)
T TIGR01638        10 TNRDLLERLSYVASKKYNDTKFLNLELVEVVRANYRGGAKSKSYITFEARDKPDGPLGEYQQAAVVYL   77 (92)
T ss_pred             CHHHHHHHHHHHHHHHhhhhcCceEEEEEEEEEEeeccceEEEEEEEEEecCCCCCHHHhhheeeEec
Confidence            4556699999999999999999999999999999999999999999999873   3456677777764

This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.

>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []

Probab=96.34  E-value=0.21  Score=37.26  Aligned_cols=78  Identities=13%  Similarity=0.100  Sum_probs=54.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCc---eeEEEEEEEEEEeee--eEeEEEEEEEee---CceeeEEEEEEEEecCCCcee
Q 048720           17 RKNADVEGFVHFSIQEHNKKENAL---LEFARVLKAKVQVVA--GKLYCFILQVIK---NVKKKIYEAKISVKSWNKFKQ   88 (109)
Q Consensus        17 ~~d~~v~~la~~Av~~~N~~~~~~---~~~~kVv~a~~QVVa--G~nY~l~v~~~~---~~~~~~y~~~Vw~~PW~~~~~   88 (109)
                      ++.-..+++|+-|+.=+|-+.+.+   +.+.+|.+|...++.  |-+|.|.|.+.+   +.....|.|+|+-. -.+..-
T Consensus         4 p~h~~a~rAA~va~hy~N~~~GSP~~l~~l~~V~~a~~e~ip~~G~Ky~L~FSte~~~~~e~~g~CsA~V~f~-~qkp~P   82 (220)
T PF06907_consen    4 PSHRPAQRAARVAQHYINYRAGSPSRLFVLQQVQKARAEDIPGEGCKYDLVFSTEEYIEGEHLGNCSAEVFFK-NQKPRP   82 (220)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHH-BTTB-EEEEEEEEEEEEEETTTEEEEEEEEEEEETTT---EEEEEEEEEET-T-----
T ss_pred             CcchHHHHHHHHHHHHhccccCCCceeeehhhhhhhhheeccCCCCEEEEEEEhHHhhcCCceeEeEEEEEec-CCCCCC
Confidence            445568899999998889987765   566889999999884  799999999987   35678999999873 233333


Q ss_pred             EEEEEec
Q 048720           89 LWEFKHT   95 (109)
Q Consensus        89 l~~f~~~   95 (109)
                      -..+.|.
T Consensus        83 ~V~vtc~   89 (220)
T PF06907_consen   83 AVNVTCT   89 (220)
T ss_dssp             EEEEEEC
T ss_pred             cEEEEEE
Confidence            4555554

Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.

>TIGR01572 A_thl_para_3677 Arabidopsis paralogous family TIGR01572

Probab=94.68  E-value=0.21  Score=38.20  Aligned_cols=60  Identities=17%  Similarity=0.241  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeEeEEEEEEEeeC---ceeeEEEEEEEEe
Q 048720           22 VEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKN---VKKKIYEAKISVK   81 (109)
Q Consensus        22 v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~nY~l~v~~~~~---~~~~~y~~~Vw~~   81 (109)
                      +.-.|+.++.-||-+.+.+|+|..|.+.-++..+=+.|+||+.+.|.   ...+.|+..|.++
T Consensus        42 vklyAr~GLH~YN~~~GTNlel~~v~K~N~~~~~~~syyITL~A~DP~s~~s~qTFQtrV~e~  104 (265)
T TIGR01572        42 VKIYARVGLHRYNFLEGTNLELDHVDKFNKRMCALSSYYITLLAVDPDSRFLQQTFQVRVDEQ  104 (265)
T ss_pred             HHHHHHhhhhhhhhccCccceehhhhhhccchhhheeeeEEEEEecCCccccceEEEEEEEec
Confidence            68889999999999999999999999999999999999999999884   3567888888776

This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.

>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase

Probab=82.25  E-value=5.7  Score=32.81  Aligned_cols=49  Identities=20%  Similarity=0.352  Sum_probs=43.2

Q ss_pred             CHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEe--eeeEeEEEEEEEee
Q 048720           19 NADVEGFVHFSIQEHNKKENALLEFARVLKAKVQV--VAGKLYCFILQVIK   67 (109)
Q Consensus        19 d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QV--VaG~nY~l~v~~~~   67 (109)
                      -.++.++...|+...|+.....++|.+++.+...+  .-|+-|.|++.+..
T Consensus       160 ~~dl~~vi~~a~~~ln~~~~~~~~~~~l~~GY~R~dp~rG~~Y~Ldl~l~~  210 (499)
T PF05679_consen  160 REDLDDVIEQAMEELNRKSRRVLEFRDLINGYRRFDPTRGMDYILDLLLKY  210 (499)
T ss_pred             HHHHHHHHHHHHHHHhccccccEEeeeeeeEEEEecCCCCceEEEEEEEee
Confidence            36799999999999999988889999999998876  56999999998765

Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	109
3ima_B	91	Complex Strcuture Of Tarocystatin And Papain Length		2e-17
2l4v_A	135	Three Dimensional Structure Of Pineapple Cystatin L		2e-15
1eqk_A	102	Solution Structure Of Oryzacystatin-I, A Cysteine P		3e-14
3ul5_A	139	Saccharum Officinarum Canecystatin-1 In Space Group		4e-12
2w9p_A	87	Crystal Structure Of Potato Multicystatin Length =		8e-12

>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain Length = 91

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 63/87 (72%)
Query: 6  LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
          L+ G+ D    + +A+VE    F++ EHNKKENALL+F+R++KAK QVV+G ++   ++V
Sbjct: 2  LMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVEV 61
Query: 66 IKNVKKKIYEAKISVKSWNKFKQLWEF 92
          I+  KKK+YEAK+ V++W   K+L EF
Sbjct: 62 IEGGKKKVYEAKVWVQAWLNSKKLHEF 88

>pdb|2L4V|A Chain A, Three Dimensional Structure Of Pineapple Cystatin Length = 135

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 6   LLQGVYDYGSNRKNA-DVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQ 64
           ++ G+YD   N +N  D E    F+++E+N K NALLEF RV+KAK QVV+G ++   ++
Sbjct: 42  IMGGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVE 101
Query: 65  VIKNVKKKIYEAKISVKSWNKFKQLWEFKH 94
           V    KKK+YEAK+  + W  F+QL EF +
Sbjct: 102 VNDAGKKKLYEAKVWEQVWMNFRQLQEFTY 131

>pdb|1EQK|A Chain A, Solution Structure Of Oryzacystatin-I, A Cysteine Proteinase Inhibitor Of The Rice, Oryza Sativa L. Japonica Length = 102

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 6  LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
          +L GV   G N  +  +     F++ EHNKK N+LLEF +++  K QVVAG LY F ++V
Sbjct: 8  VLGGVEPVG-NENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEV 66
Query: 66 IKNVKKKIYEAKISVKSWNKFKQLWEFK 93
           +   KK+YEAK+  K W  FK+L EFK
Sbjct: 67 KEGDAKKLYEAKVWEKPWMDFKELQEFK 94

>pdb|3UL5|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group C2221 Length = 139

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 10  VYDYGSNRKNADVEG--FVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIK 67
           V D  +  +N D+E      F++ EHN K NA+LEF R++K + QVVAG ++ F +QV +
Sbjct: 49  VRDAPAGHEN-DLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFTVQVKE 107
Query: 68  -NVKKKIYEAKISVKSWNKFKQLWEFK 93
               KK+YEAK+  K W  FKQL  F+
Sbjct: 108 AGGGKKLYEAKVWEKVWENFKQLQSFQ 134

>pdb|2W9P|A Chain A, Crystal Structure Of Potato Multicystatin Length = 87

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 15 SNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNV-KKKI 73
           N  N   +    F+IQ++NKK+NA LEF   L  K QVVAG +Y   L    +  KKKI
Sbjct: 6  PNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKI 65
Query: 74 YEAKISVKSWNKFKQLWEFK 93
          Y+AKI VK W  FK++ EFK
Sbjct: 66 YKAKIWVKEWEDFKKVVEFK 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	4e-24
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	3e-23
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	4e-22
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	2e-21
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	2e-12
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	3e-08
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	4e-08
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	8e-08
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	1e-07

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus} Length = 135

 Score = 88.3 bits (218), Expect = 4e-24
 Identities = 36/84 (42%), Positives = 52/84 (61%)

Query: 15  SNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIY 74
           +N    D E    F+++E+N K NALLEF RV+KAK QVV+G ++   ++V    KKK+Y
Sbjct: 52  NNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDAGKKKLY 111

Query: 75  EAKISVKSWNKFKQLWEFKHTKHG 98
           EAK+  + W  F+QL EF +    
Sbjct: 112 EAKVWEQVWMNFRQLQEFTYLGDA 135

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} Length = 91

 Score = 85.0 bits (210), Expect = 3e-23
 Identities = 41/89 (46%), Positives = 63/89 (70%)

Query: 6  LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
          L+ G+ D    + +A+VE    F++ EHNKKENALL+F+R++KAK QVV+G ++   ++V
Sbjct: 2  LMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVEV 61

Query: 66 IKNVKKKIYEAKISVKSWNKFKQLWEFKH 94
          I+  KKK+YEAK+ V++W   K+L EF  
Sbjct: 62 IEGGKKKVYEAKVWVQAWLNSKKLHEFSP 90

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2 Length = 102

 Score = 82.3 bits (203), Expect = 4e-22
 Identities = 36/85 (42%), Positives = 50/85 (58%)

Query: 15  SNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIY 74
            N  +  +     F++ EHNKK N+LLEF +++  K QVVAG LY F ++V +   KK+Y
Sbjct: 16  GNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLY 75

Query: 75  EAKISVKSWNKFKQLWEFKHTKHGP 99
           EAK+  K W  FK+L EFK      
Sbjct: 76  EAKVWEKPWMDFKELQEFKPVDASA 100

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A Length = 87

 Score = 79.9 bits (197), Expect = 2e-21
 Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 16 NRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNV-KKKIY 74
          N  N   +    F+IQ++NKK+NA LEF   L  K QVVAG +Y   L    +  KKKIY
Sbjct: 7  NPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIY 66

Query: 75 EAKISVKSWNKFKQLWEFKH 94
          +AKI VK W  FK++ EFK 
Sbjct: 67 KAKIWVKEWEDFKKVVEFKL 86

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata} Length = 115

 Score = 57.9 bits (139), Expect = 2e-12
 Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 19/97 (19%)

Query: 16  NRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIK-------- 67
           +   A      HF+     +          V + + QVVAG  Y   +++          
Sbjct: 11  DPTEARFLELAHFATSSQTEGREFYDTVVTVKEVETQVVAGMNYKLTIEISPSVCKIGEV 70

Query: 68  -----------NVKKKIYEAKISVKSWNKFKQLWEFK 93
                        +K    A I    W   K +  ++
Sbjct: 71  QYSAEQCVPKDAQQKSTCVAVIYHVPWQNQKSVTSYR 107

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A Length = 115

 Score = 47.0 bits (111), Expect = 3e-08
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 22/100 (22%)

Query: 15  SNRKNADVEGFVHFSIQEHNKKENALLEF---ARVLKAKVQVVAGKLYCFILQVIK---- 67
           SN+ + +     H++    + ++     F     V+K + Q VAG  Y   L+V +    
Sbjct: 13  SNQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMKVETQTVAGTNYRLTLKVAESTCE 72

Query: 68  --------------NVKKKIYEAKISVKSWNKFKQLWEFK 93
                         N  ++     I  ++    K +  F+
Sbjct: 73  LTSTYNKDTCQANANAAQRTCTTVI-YRNMQGEKSINSFE 111

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens} Length = 131

 Score = 46.8 bits (110), Expect = 4e-08
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 23/98 (23%)

Query: 19  NADVEGFVHFSIQEHNKKENALLEFA--RVLKAKVQVVAGKLY----------------- 59
           +  V     +S+++ N   N +  F   R+ +A VQ+V G  Y                 
Sbjct: 27  DPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHL 86

Query: 60  ----CFILQVIKNVKKKIYEAKISVKSWNKFKQLWEFK 93
               C         +     +++ V  W +  ++   +
Sbjct: 87  RLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLR 124

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A Length = 122

 Score = 46.0 bits (108), Expect = 8e-08
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 23/98 (23%)

Query: 19  NADVEGFVHFSIQEHNKKENA---LLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYE 75
           +  V+  + F+I E+NK  N         +V+ A  Q+V G  Y F ++  +    K   
Sbjct: 21  DKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQP 80

Query: 76  --------------------AKISVKSWNKFKQLWEFK 93
                                +I+   W     +  +K
Sbjct: 81  NLDNCPFNDQPKLKEEEFCSFQINEVPWEDKISILNYK 118

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A Length = 111

 Score = 45.1 bits (106), Expect = 1e-07
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 22/97 (22%)

Query: 19  NADVEGFVHFSIQEHNKKENALLEFA--RVLKAKVQVVAGKLY----------------- 59
           +  ++  + F++ E+N+  N        RV+ AK Q+V+G  Y                 
Sbjct: 13  DEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTTCPKSSGD 72

Query: 60  ---CFILQVIKNVKKKIYEAKISVKSWNKFKQLWEFK 93
              C      +  K       +    W    +L E K
Sbjct: 73  LQSCEFHDEPEMAKYTTCTFVVYSIPWLNQIKLLESK 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	100.0
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	100.0
3ul5_A	139	Canecystatin-1; defense, hydrolase inhibitor; 2.30	100.0
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	99.98
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	99.97
2o9u_X	97	Monellin chain B and monellin chain A; alternative	99.97
2kxg_A	95	Aspartic protease inhibitor; sqapi, protein, hydro	99.97
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	99.96
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	99.95
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	99.95
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	99.95
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	99.95
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	99.94
2oct_A	98	Cystatin B; stefin, amyloid, domain-swapping, hand	99.9
1cyu_A	98	Cystatin A, stefin A; proteinase inhibitor (cystei	99.89
2bo9_B	222	Human latexin, MUM; metallocarboxypeptidase, X-RAY	96.55
1kwi_A	101	Protegrin-3 precursor; cathelicidin motif, disulfi	92.88

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} SCOP: d.17.1.0

Probab=100.00  E-value=5.6e-35  Score=188.55  Aligned_cols=91  Identities=45%  Similarity=0.714  Sum_probs=81.9

Q ss_pred             ecccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeEeEEEEEEEeeCceeeEEEEEEEEecCC
Q 048720            5 LLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKSWN   84 (109)
Q Consensus         5 ~~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~nY~l~v~~~~~~~~~~y~~~Vw~~PW~   84 (109)
                      +++|||++++++++||+++++|+||+.+||+++|+.|.|++|+++++|||||+||+|+|++.+++..+.|+++||++||+
T Consensus         1 ~~~GG~~~~~~~~~d~~v~~~a~fav~~~n~~~n~~~~~~~Vv~a~~QVVaG~nY~l~v~~~~~~~~~~y~a~V~~~pW~   80 (91)
T 3ima_B            1 ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVEVIEGGKKKVYEAKVWVQAWL   80 (91)
T ss_dssp             CCBTCEEC------CHHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEESSSEEEEEEEEEEETTEEEEEEEEEEEEGGG
T ss_pred             CCCcccccCcCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCceEEEEEEEEEeeCC
Confidence            46899999954589999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEEec
Q 048720           85 KFKQLWEFKHT   95 (109)
Q Consensus        85 ~~~~l~~f~~~   95 (109)
                      |+++|++|+|+
T Consensus        81 ~~~~l~~F~~~   91 (91)
T 3ima_B           81 NSKKLHEFSPI   91 (91)
T ss_dssp             TEEEEEEEEC-
T ss_pred             CcEEEEEEEeC
Confidence            99999999984

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2

Probab=100.00  E-value=2.1e-34  Score=189.02  Aligned_cols=96  Identities=42%  Similarity=0.645  Sum_probs=91.5

Q ss_pred             eecccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeEeEEEEEEEeeCceeeEEEEEEEEecC
Q 048720            4 LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKSW   83 (109)
Q Consensus         4 ~~~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~nY~l~v~~~~~~~~~~y~~~Vw~~PW   83 (109)
                      .+++|||+++. +++||+++++++||+.+||+++|+.|+|++|+++++|||||+||+|+|++.++++.+.|+++||++||
T Consensus         6 ~~~~GG~~~~~-~~~~~~v~~~a~~Av~~~n~~~n~~~~~~~Vv~a~~QVVaG~~Y~l~v~~~~~~~~~~c~~~V~~~PW   84 (102)
T 1eqk_A            6 GPVLGGVEPVG-NENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPW   84 (102)
T ss_dssp             CSCSSSSEEEC-CTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEESSSEEEEEEEEEEETTCCEEEEEEEEEBTT
T ss_pred             CCCCcccccCC-CCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCCcEEEEEEEEEeeC
Confidence            35799999984 58999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEEEecCCCCC
Q 048720           84 NKFKQLWEFKHTKHGPF  100 (109)
Q Consensus        84 ~~~~~l~~f~~~~~~~~  100 (109)
                      +++++|++|+|..++|+
T Consensus        85 ~~~~~l~~f~c~~~~~~  101 (102)
T 1eqk_A           85 MDFKELQEFKPVDASAN  101 (102)
T ss_dssp             TTBCCEEEEECCCCCCC
T ss_pred             CCceEEEEEEcCCCCCC
Confidence            99999999999999985

>3ul5_A Canecystatin-1; defense, hydrolase inhibitor; 2.30A {Saccharum officinarum} PDB: 3ul6_A*

Probab=100.00  E-value=1.4e-33  Score=194.64  Aligned_cols=95  Identities=37%  Similarity=0.576  Sum_probs=78.8

Q ss_pred             eecccceeecC-CCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeEeEEEEEEEee-CceeeEEEEEEEEe
Q 048720            4 LLLLQGVYDYG-SNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIK-NVKKKIYEAKISVK   81 (109)
Q Consensus         4 ~~~~GG~~~~~-~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~nY~l~v~~~~-~~~~~~y~~~Vw~~   81 (109)
                      +.++|||++++ ++++||+++++|+||+.+||+++|+.|+|++|++|++|||||+||+|+|++.+ ++..+.|+|+||++
T Consensus        43 ~~~~GG~~~i~~~~~ndpeVqela~fAV~e~Nkksn~~l~~~kVv~a~sQVVAG~nY~L~V~a~d~~g~~~~y~a~Vwek  122 (139)
T 3ul5_A           43 VGMVGDVRDAPAGHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFTVQVKEAGGGKKLYEAKVWEK  122 (139)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred             CCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEEEecCEEEEEEEEEecCCCCeEEEEEEEEEe
Confidence            46799999992 34899999999999999999999999999999999999999999999999999 88899999999999


Q ss_pred             cCCCceeEEEEEecCCC
Q 048720           82 SWNKFKQLWEFKHTKHG   98 (109)
Q Consensus        82 PW~~~~~l~~f~~~~~~   98 (109)
                      ||+++++|++|+|+.++
T Consensus       123 PW~n~k~L~sF~p~~~~  139 (139)
T 3ul5_A          123 VWENFKQLQSFQPVGDA  139 (139)
T ss_dssp             TTTTEEEEEEEEECC--
T ss_pred             eCCCceEEEEEEEcCCC
Confidence            99999999999999764

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus}

Probab=99.98  E-value=5.8e-32  Score=185.91  Aligned_cols=95  Identities=41%  Similarity=0.619  Sum_probs=89.6

Q ss_pred             eecccceeecC-CCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeEeEEEEEEEeeCceeeEEEEEEEEec
Q 048720            4 LLLLQGVYDYG-SNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKS   82 (109)
Q Consensus         4 ~~~~GG~~~~~-~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~nY~l~v~~~~~~~~~~y~~~Vw~~P   82 (109)
                      .+++|||++++ ++++|++++++++||+.+||+++|+.|.|++|+++++|||||+||+|+|++.++++.+.|+++||++|
T Consensus        40 ~~~~GG~~~i~~~~~nd~evqe~a~fAv~e~N~~sn~~~~f~kVv~a~~QVVAG~nY~l~vev~~~~~~~~c~a~Vw~kP  119 (135)
T 2l4v_A           40 HPIMGGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDAGKKKLYEAKVWEQV  119 (135)
T ss_dssp             CCCCCCSSCCCCTTTTSHHHHHHHHHHHHHHHHHTSCCCEEEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred             CCCCCccCcCCCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEecCEEEEEEEEEecCCceEEEEEEEEEec
Confidence            35799999994 34899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEEecCCC
Q 048720           83 WNKFKQLWEFKHTKHG   98 (109)
Q Consensus        83 W~~~~~l~~f~~~~~~   98 (109)
                      |+|+++|++|+|+.++
T Consensus       120 W~n~~~L~~f~~~~~~  135 (135)
T 2l4v_A          120 WMNFRQLQEFTYLGDA  135 (135)
T ss_dssp             SSCCEEEEEEEECSCC
T ss_pred             CCCceEEEEEEecCCC
Confidence            9999999999999764

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A

Probab=99.97  E-value=4e-31  Score=168.72  Aligned_cols=86  Identities=45%  Similarity=0.668  Sum_probs=82.0

Q ss_pred             ceeecCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeEeEEEEEEEee-CceeeEEEEEEEEecCCCce
Q 048720            9 GVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIK-NVKKKIYEAKISVKSWNKFK   87 (109)
Q Consensus         9 G~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~nY~l~v~~~~-~~~~~~y~~~Vw~~PW~~~~   87 (109)
                      ||++++ |++||+++++|+||+.+||+++|+.+++++|+++++|||||+||+|++++.+ +++...|+++||++||++++
T Consensus         1 G~~~~~-~~~d~~v~~~~~fAv~~~n~~~n~~~~~~~vv~a~~QVVaG~~Y~l~v~~~~~~~~~~~c~~~V~~~PW~~~~   79 (87)
T 2w9q_A            1 GIVNVP-NPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIYKAKIWVKEWEDFK   79 (87)
T ss_dssp             CCEECS-STTSHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEEEEESSSEEEEEEEEEEETTTEEEEEEEEEEEEGGGTEE
T ss_pred             CcccCC-CCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCCCeEEEEEEEEEeeCCCce
Confidence            799996 6899999999999999999999999999999999999999999999999998 57788999999999999999


Q ss_pred             eEEEEEec
Q 048720           88 QLWEFKHT   95 (109)
Q Consensus        88 ~l~~f~~~   95 (109)
                      +|++|+|+
T Consensus        80 ~l~~f~~~   87 (87)
T 2w9q_A           80 KVVEFKLV   87 (87)
T ss_dssp             EEEEEEEC
T ss_pred             EEEeeccC
Confidence            99999985

>2o9u_X Monellin chain B and monellin chain A; alternative conformations, 3-10 polyproline II helix, plant protein; 1.15A {Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A 1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A 1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B* 2q33_A*

Probab=99.97  E-value=3.8e-31  Score=172.27  Aligned_cols=85  Identities=18%  Similarity=0.243  Sum_probs=78.4

Q ss_pred             ccceeecCCCCCCHHHHHHHHHHHHHHHhhc-CCceeEEEEEEE-----------EEEeeeeEeEEEEEEEeeCceeeEE
Q 048720            7 LQGVYDYGSNRKNADVEGFVHFSIQEHNKKE-NALLEFARVLKA-----------KVQVVAGKLYCFILQVIKNVKKKIY   74 (109)
Q Consensus         7 ~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~-~~~~~~~kVv~a-----------~~QVVaG~nY~l~v~~~~~~~~~~y   74 (109)
                      .|||+++  |+ ||+++++|+|||++||++. ++.|+|.+|+++           ++| |||+||+|+|++.++    .|
T Consensus         1 ~Ggw~~i--dv-~~~iqela~FAV~e~nk~~~~~~L~f~~Vv~~~~~~~~~~~~~~~Q-VaG~nY~Ltlea~d~----~y   72 (97)
T 2o9u_X            1 MGEWEII--DI-GPFTQNLGKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEGFRE-IKGYEYQLYVYASDK----LF   72 (97)
T ss_dssp             -CCCEEE--CC-SHHHHHHHHHHHHHHHHHCTTCSCCEEEEEEEEEEEEEECSSSSCS-EEEEEEEEEEEETTE----EC
T ss_pred             CCCceEC--CC-CHHHHHHHHHHHHHHhccccCCCcEEEEEEEcccccccccchhhee-eccEEEEEEEEEeCC----ce
Confidence            4999999  58 9999999999999999997 889999999999           999 999999999999876    89


Q ss_pred             EEEEEEecCCCceeEEEEEecCCCC
Q 048720           75 EAKISVKSWNKFKQLWEFKHTKHGP   99 (109)
Q Consensus        75 ~~~Vw~~PW~~~~~l~~f~~~~~~~   99 (109)
                      +|+||++||+++++|++|+|..++|
T Consensus        73 eA~V~ekpw~n~k~L~sF~~~~~~~   97 (97)
T 2o9u_X           73 RADISEDYKTRGRKLLRFNGPVPPP   97 (97)
T ss_dssp             -CEEEEETTTCCEEEEECCCCCCCC
T ss_pred             EEEEEEecCCCcEEeeEccCCCCCC
Confidence            9999999999999999999886665

>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}

Probab=99.97  E-value=6.6e-30  Score=166.40  Aligned_cols=84  Identities=20%  Similarity=0.277  Sum_probs=80.1

Q ss_pred             ecccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeE-----eEEEEEEEeeC--ceeeEEEEE
Q 048720            5 LLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGK-----LYCFILQVIKN--VKKKIYEAK   77 (109)
Q Consensus         5 ~~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~-----nY~l~v~~~~~--~~~~~y~~~   77 (109)
                      .++|||+++  |++||+++++|+|||++||++   .++|++|++|  |||||+     ||+|+|++.++  ++.+.|+|+
T Consensus         4 ~~~Gg~~~i--~~nd~~v~e~a~fAv~e~N~~---~l~~~~Vv~a--QVVaG~~~~~~~Y~L~l~~~~~~~~~~~~y~a~   76 (95)
T 2kxg_A            4 PAIGEVIGI--SVNDPRVKEIAEFALKQHAEQ---NLILAGVDAG--QIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVV   76 (95)
T ss_dssp             CSSCCCCCC--CTTCHHHHHHHHHHHHHCCTT---CCEEEEEEEE--EEECSSCSSCCEEEEEEEEESCTTSCCEEEEEE
T ss_pred             CCCCcceEC--CCCCHHHHHHHHHHHHHHHhh---CcEEEEEEEE--eEecCccccCccEEEEEEEecCCCCCceEEEEE
Confidence            578999999  699999999999999999998   7999999999  999999     99999999998  788999999


Q ss_pred             EEEecCCCceeEEEEEec
Q 048720           78 ISVKSWNKFKQLWEFKHT   95 (109)
Q Consensus        78 Vw~~PW~~~~~l~~f~~~   95 (109)
                      ||++||+++++|++|+|+
T Consensus        77 Vw~kpW~n~~~L~sF~~~   94 (95)
T 2kxg_A           77 VLEKASDNSLKLVAFVPL   94 (95)
T ss_dssp             EEEETTTTEEEEEEEEEC
T ss_pred             EEEccCCCcEEEEEeEec
Confidence            999999999999999985

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A

Probab=99.96  E-value=2e-28  Score=161.65  Aligned_cols=88  Identities=22%  Similarity=0.302  Sum_probs=82.4

Q ss_pred             cccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCce--eEEEEEEEEEEeeeeEeEEEEEEEeeCc--------------
Q 048720            6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALL--EFARVLKAKVQVVAGKLYCFILQVIKNV--------------   69 (109)
Q Consensus         6 ~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~--~~~kVv~a~~QVVaG~nY~l~v~~~~~~--------------   69 (109)
                      ++|||+++  +++||+++++|+||+++||+++|+.+  ++++|++|++|||||++|+|+|++.++.              
T Consensus         2 ~~Gg~~~~--~~~d~~v~~~~~~av~~~N~~s~~~~~~~l~~v~~a~~QvVaG~~y~l~v~v~~t~C~k~~~~~~~C~~~   79 (111)
T 1yvb_I            2 LLGAPVPV--DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTTCPKSSGDLQSCEFH   79 (111)
T ss_dssp             CTTCEECC--CTTCHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCCEEEESSSEEEEEEEEEEEBSSCSSSSCSSCCCBC
T ss_pred             CCCCceEC--CCCCHHHHHHHHHHHHHHHHhCCCcceeEEEEEEEEEEEEECCeEEEEEEEEEccccCCCCCCcccCCCC
Confidence            68999999  58999999999999999999999876  9999999999999999999999999863              


Q ss_pred             ------eeeEEEEEEEEecCCCceeEEEEEec
Q 048720           70 ------KKKIYEAKISVKSWNKFKQLWEFKHT   95 (109)
Q Consensus        70 ------~~~~y~~~Vw~~PW~~~~~l~~f~~~   95 (109)
                            +...|.++||++||+++++|++|+|.
T Consensus        80 ~~~~~~~~~~C~~~V~~~pW~~~~~l~~~~C~  111 (111)
T 1yvb_I           80 DEPEMAKYTTCTFVVYSIPWLNQIKLLESKCQ  111 (111)
T ss_dssp             SSTTTSCCEEEEEEEEEEGGGTEEEEEEEEEC
T ss_pred             CCcccccccEEEEEEEecCCCCccEeeccccC
Confidence                  46899999999999999999999984

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata}

Probab=99.95  E-value=9.5e-28  Score=160.53  Aligned_cols=89  Identities=20%  Similarity=0.284  Sum_probs=79.7

Q ss_pred             ecccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCce--eEEEEEEEEEEeeeeEeEEEEEEEeeC--------------
Q 048720            5 LLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALL--EFARVLKAKVQVVAGKLYCFILQVIKN--------------   68 (109)
Q Consensus         5 ~~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~--~~~kVv~a~~QVVaG~nY~l~v~~~~~--------------   68 (109)
                      +++|||++++  ++||+++++|+||+.  |+++++.+  ++++|++|++|||||+||+|+|+++++              
T Consensus         2 ~~~GG~~~i~--~~d~~v~~~a~~Av~--N~~s~~~~~~~~~kV~~a~~QVVaG~~Y~i~v~v~~t~C~K~~~~~~~~~C   77 (115)
T 3l0r_A            2 SIPGGWTRQD--PTEARFLELAHFATS--SQTEGREFYDTVVTVKEVETQVVAGMNYKLTIEISPSVCKIGEVQYSAEQC   77 (115)
T ss_dssp             -CCCSCEEEC--TTCHHHHHHHHHHHT--TCCTTCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEEBTTBCCCTTTC
T ss_pred             CCcccceeCC--CCCHHHHHHHHHHHh--ccccCCCcceEEEEEEEEEEEEEeeEEEEEEEEEecccccccccccccccC
Confidence            4689999994  799999999999999  88888774  889999999999999999999999763              


Q ss_pred             -----ceeeEEEEEEEEecCCCceeEEEEEecCC
Q 048720           69 -----VKKKIYEAKISVKSWNKFKQLWEFKHTKH   97 (109)
Q Consensus        69 -----~~~~~y~~~Vw~~PW~~~~~l~~f~~~~~   97 (109)
                           ++...|.++||++||+++++|++|+|-.+
T Consensus        78 ~~~~~~~~~~C~~~V~~~PW~~~~~l~~~~~~~~  111 (115)
T 3l0r_A           78 VPKDAQQKSTCVAVIYHVPWQNQKSVTSYRCEHH  111 (115)
T ss_dssp             CBSCTTSCEEEEEEEEEEGGGTEEEEEEEEECC-
T ss_pred             cccCCCceeEEEEEEEEecCCCeeEEEEEEcccc
Confidence                 36689999999999999999999999765

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A

Probab=99.95  E-value=2e-27  Score=159.62  Aligned_cols=88  Identities=20%  Similarity=0.319  Sum_probs=80.3

Q ss_pred             cccceeecCCCCCCHHHHHHHHHHHHHHHhh-cCCce--eEEEEEEEEEEeeeeEeEEEEEEEeeCc-------------
Q 048720            6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKK-ENALL--EFARVLKAKVQVVAGKLYCFILQVIKNV-------------   69 (109)
Q Consensus         6 ~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~-~~~~~--~~~kVv~a~~QVVaG~nY~l~v~~~~~~-------------   69 (109)
                      ++|||+++  +++||+++++++||+++||++ +++.+  ++++|+++++|||+|+||+|+|++.++.             
T Consensus        10 ~~Gg~~~~--~~~d~~v~~~a~~Av~~~N~~~s~~~~~~~l~~v~~a~~QVVaG~~Y~l~v~v~~t~C~k~~~~~~~C~~   87 (122)
T 1roa_A           10 LAGGIHAT--DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPF   87 (122)
T ss_dssp             --CCEEEE--CTTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTSSCCSSCCB
T ss_pred             CCCCCeEC--CCCCHHHHHHHHHHHHHHHhcccCCCceeEEEEEEEEEEEEECCeEEEEEEEEEccccCCCCCCcccCCC
Confidence            68999999  589999999999999999999 99886  5599999999999999999999999864             


Q ss_pred             -------eeeEEEEEEEEecCCCceeEEEEEec
Q 048720           70 -------KKKIYEAKISVKSWNKFKQLWEFKHT   95 (109)
Q Consensus        70 -------~~~~y~~~Vw~~PW~~~~~l~~f~~~   95 (109)
                             +...|.++||++||+++++|++|+|.
T Consensus        88 ~~~~~~~~~~~C~~~V~~~PW~~~~~l~~~~C~  120 (122)
T 1roa_A           88 NDQPKLKEEEFCSFQINEVPWEDKISILNYKCR  120 (122)
T ss_dssp             CCSTTCCCCEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             CCCcccccceEEEEEEEecccCCccEECccccc
Confidence                   36899999999999999999999995

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=161.48  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=82.9

Q ss_pred             eecccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCce--eEEEEEEEEEEeeeeEeEEEEEEEeeCc------------
Q 048720            4 LLLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALL--EFARVLKAKVQVVAGKLYCFILQVIKNV------------   69 (109)
Q Consensus         4 ~~~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~--~~~kVv~a~~QVVaG~nY~l~v~~~~~~------------   69 (109)
                      .+++|||+++  +++||+++++|+||+++||+++|+.+  ++++|++|++|||||+||+|+|++.++.            
T Consensus        14 ~~~~Gg~~~~--~~~d~ev~e~a~~Av~~~N~~sn~~~~~~l~~V~~a~~QVVaG~~Y~l~v~v~~t~C~K~~~~~~~~C   91 (131)
T 2ch9_A           14 RVKPGFPKTI--KTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDC   91 (131)
T ss_dssp             SSCCCCCEEC--CTTCHHHHHHHHHHHHHHHHHSCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETTSCCCGGGC
T ss_pred             ccCCCCCeeC--CCCCHHHHHHHHHHHHHHHHhCCCCcceEEEEEEEeeeEecCCeEEEEEEEEEcccccCCCCCccccC
Confidence            4679999999  58999999999999999999999875  7899999999999999999999998741            


Q ss_pred             ---------eeeEEEEEEEEecCCCceeEEEEEecCC
Q 048720           70 ---------KKKIYEAKISVKSWNKFKQLWEFKHTKH   97 (109)
Q Consensus        70 ---------~~~~y~~~Vw~~PW~~~~~l~~f~~~~~   97 (109)
                               +...|.++||++||+++++|++|+|-.+
T Consensus        92 ~~~~~~~~~~~~~C~~~V~~~PW~~~~~l~~f~~~~~  128 (131)
T 2ch9_A           92 DFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRCHHH  128 (131)
T ss_dssp             CBCCSTTTCCEEEEEEEEEEEGGGTEEEEEEEEEECC
T ss_pred             CcccCcccccccEEEEEEEEecCCCeeEEEEEecccc
Confidence                     1348999999999999999999999765

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} SCOP: d.17.1.2 PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 3sva_A 3s67_A 1r4c_A

Probab=99.95  E-value=5e-27  Score=157.52  Aligned_cols=89  Identities=22%  Similarity=0.325  Sum_probs=79.6

Q ss_pred             ecccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCc--eeEEEEEEEEEEeeeeEeEEEEEEEeeC--------------
Q 048720            5 LLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENAL--LEFARVLKAKVQVVAGKLYCFILQVIKN--------------   68 (109)
Q Consensus         5 ~~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~--~~~~kVv~a~~QVVaG~nY~l~v~~~~~--------------   68 (109)
                      .++|||+++  +++||+++++|+||+.+||+++++.  |++++|+++++|||+|++|+|+|++.++              
T Consensus         8 ~~~Gg~~~~--~~~d~~v~~~a~~av~~~N~~sn~~~~~~~~~v~~a~~QvVaG~~Y~l~v~v~~t~C~K~~~~~~~C~~   85 (120)
T 3gax_A            8 RLVGGPMDA--SVEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAGVNYFLDVELCRTTCTKTQPNLDNCPF   85 (120)
T ss_dssp             ----CCEEE--CTTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEESCC--CCCCCB
T ss_pred             ccCCCCEeC--CCCCHHHHHHHHHHHHHHHhccCCcceeeEEEEEEEEEEEecCeEEEEEEEEEeeeccCCCCCcccCCC
Confidence            578999999  5899999999999999999999987  7999999999999999999999999874              


Q ss_pred             ------ceeeEEEEEEEEecCCCceeEEEEEec
Q 048720           69 ------VKKKIYEAKISVKSWNKFKQLWEFKHT   95 (109)
Q Consensus        69 ------~~~~~y~~~Vw~~PW~~~~~l~~f~~~   95 (109)
                            ++...|.++||++||+++++|+++.|.
T Consensus        86 ~~~~~~~~~~~C~~~V~~~PW~~~~~l~~~~C~  118 (120)
T 3gax_A           86 HDQPHLKRKAFCSFQIYAVPWQGTMTLSKSTCQ  118 (120)
T ss_dssp             CSSHHHHCCEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             cCCccccCceEEEEEEEecCCCCeEEeccceec
Confidence                  246899999999999999999999996

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A

Probab=99.94  E-value=3.3e-26  Score=152.42  Aligned_cols=90  Identities=19%  Similarity=0.272  Sum_probs=80.7

Q ss_pred             ecccceeecCCCCCCHHHHHHHHHHHHHHHhhcC-Cce--eEEEEEEEEEEeeeeEeEEEEEEEee--------------
Q 048720            5 LLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKEN-ALL--EFARVLKAKVQVVAGKLYCFILQVIK--------------   67 (109)
Q Consensus         5 ~~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~-~~~--~~~kVv~a~~QVVaG~nY~l~v~~~~--------------   67 (109)
                      .++|||++++ +.+||+++++++||+.+||++++ +.+  ++++|++|++|||||+||+|+|++++              
T Consensus         4 ~~~Gg~~~~~-~~~~~~v~~~~~~av~~~N~~sn~~~~~~~~~~V~~a~~QvVaG~~Y~l~v~v~~t~C~K~~~~~~~~C   82 (115)
T 3mwz_A            4 ALRGGYRERS-NQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMKVETQTVAGTNYRLTLKVAESTCELTSTYNKDTC   82 (115)
T ss_dssp             CCSSCCEEEC-TTSCTHHHHHHHHHHHHHHHTSTTCCEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETTSCCCTTTC
T ss_pred             ccCCcceECC-CCCCHHHHHHHHHHHHHHHhhcCCcccceeeeeeeEEEeeccCCEEEEEEEEEEeccccCCCcCCcccC
Confidence            5789999995 23899999999999999999988 554  78999999999999999999999964              


Q ss_pred             ----CceeeEEEEEEEEecCCCceeEEEEEecC
Q 048720           68 ----NVKKKIYEAKISVKSWNKFKQLWEFKHTK   96 (109)
Q Consensus        68 ----~~~~~~y~~~Vw~~PW~~~~~l~~f~~~~   96 (109)
                          ++....|.++||++| +++++|++|+|..
T Consensus        83 ~~~~~~~~~~C~~~V~~~P-~~~~~l~~~~C~~  114 (115)
T 3mwz_A           83 QANANAAQRTCTTVIYRNM-QGEKSINSFECAA  114 (115)
T ss_dssp             CCCTTSCEEEEEEEEEECT-TSCEEEEEEEECC
T ss_pred             CCCCCCCeeEEEEEEEECC-CCEEEEccccccC
Confidence                346789999999999 9999999999973

>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*

Probab=99.90  E-value=1.8e-23  Score=136.53  Aligned_cols=84  Identities=17%  Similarity=0.121  Sum_probs=77.7

Q ss_pred             cccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeEeEEEEEEEeeCceeeEEEEEEEEe-c-C
Q 048720            6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVK-S-W   83 (109)
Q Consensus         6 ~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~nY~l~v~~~~~~~~~~y~~~Vw~~-P-W   83 (109)
                      |+|||++++  ++||+++++++||+.++|++.|..+++.+++++++|||||+||+|++++.+++   .++++||+. | |
T Consensus         2 m~GG~~~~~--~~~~evq~i~~~a~~~~n~~~~~~~~~~~vv~~~tQVVAG~NY~ikv~v~~~~---~~h~~vy~~lp~~   76 (98)
T 2oct_A            2 MSGAPSATQ--PATAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVAGTNYFIKVHVGDED---FVHLRVFQSLPHE   76 (98)
T ss_dssp             CCSSCCCCE--ECCHHHHHHHHHHHHHHHHHHTSCCSCCEEEEEEEEEEEEEEEEEEEECSTTC---EEEEEEEEESSTT
T ss_pred             CcccCcCCC--CCCHHHHHHHHHHHHHHHhhcCCccceeEEEEEEEEEeCCEEEEEEEEECCCc---EEEEEEEecCCCC
Confidence            699999994  68999999999999999999999999999999999999999999999998876   489999998 4 7


Q ss_pred             CCceeEEEEEe
Q 048720           84 NKFKQLWEFKH   94 (109)
Q Consensus        84 ~~~~~l~~f~~   94 (109)
                      .+..+|++|..
T Consensus        77 ~~~~~l~~~q~   87 (98)
T 2oct_A           77 NKSLTLSNYQT   87 (98)
T ss_dssp             CCCEEEEEEEE
T ss_pred             CCceEEEEEec
Confidence            88999999964

>1cyu_A Cystatin A, stefin A; proteinase inhibitor (cysteine); NMR {Homo sapiens} SCOP: d.17.1.2 PDB: 1cyv_A 1gd3_A 1dvc_A 1dvd_A 1n9j_A 1nb3_I* 1nb5_I* 3k9m_C 3kfq_C 3kse_D* 1gd4_A

Probab=99.89  E-value=9.1e-24  Score=137.31  Aligned_cols=84  Identities=18%  Similarity=0.156  Sum_probs=77.7

Q ss_pred             cccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeEeEEEEEEEeeCceeeEEEEEEEEec--C
Q 048720            6 LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKS--W   83 (109)
Q Consensus         6 ~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~nY~l~v~~~~~~~~~~y~~~Vw~~P--W   83 (109)
                      ++|||+++  +++||+++++|+||+.++|+++|+.|++++|++|++|||||+||+|++++.++.   .++++||...  |
T Consensus         2 ~~GG~~~~--~~~d~ev~~~a~~av~~~n~~~n~~~~~~~vv~a~~QVVaG~nY~l~v~~~~~~---c~~~~V~~~l~~~   76 (98)
T 1cyu_A            2 IPGGLSEA--KPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNK---YLHLKVFKSLPGQ   76 (98)
T ss_dssp             CCSSCSSE--EESCTTHHHHHHHTCTTTTTSSCCSSSCEEEEEEEEECSSSCEEEEEEEECSSC---BCEEEEECCCSSS
T ss_pred             CCcccccC--CCCCHHHHHHHHHHHHHHHhhcCCCcceEEEEEEEEEEecceEEEEEEEEcCCc---EEEEEEecCCCCC
Confidence            68999999  488999999999999999999999999999999999999999999999999976   3789999984  7


Q ss_pred             CCceeEEEEEe
Q 048720           84 NKFKQLWEFKH   94 (109)
Q Consensus        84 ~~~~~l~~f~~   94 (109)
                      .+.++|++|..
T Consensus        77 ~~~~~l~~~q~   87 (98)
T 1cyu_A           77 NEDLVLTGYQV   87 (98)
T ss_dssp             CCCCEEEEEEC
T ss_pred             CCCeEEEEEec
Confidence            88999999974

>2bo9_B Human latexin, MUM; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: d.17.1.5 d.17.1.5 PDB: 1wnh_A

Probab=96.55  E-value=0.13  Score=37.36  Aligned_cols=79  Identities=15%  Similarity=0.088  Sum_probs=59.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCc---eeEEEEEEEEEEeee--eEeEEEEEEEeeC---ceeeEEEEEEEEec-CCCce
Q 048720           17 RKNADVEGFVHFSIQEHNKKENAL---LEFARVLKAKVQVVA--GKLYCFILQVIKN---VKKKIYEAKISVKS-WNKFK   87 (109)
Q Consensus        17 ~~d~~v~~la~~Av~~~N~~~~~~---~~~~kVv~a~~QVVa--G~nY~l~v~~~~~---~~~~~y~~~Vw~~P-W~~~~   87 (109)
                      +.--..+++|+-|+.=+|-..+..   +.+-+|.+|+.+++.  |-+|.|+|.+.+-   +....|.|+|+-.+ -.+..
T Consensus         5 psh~~a~rAA~vA~hy~N~~~gSP~~l~~L~~V~~a~a~~ip~~G~Ky~l~Fs~e~~~~~~~~~~CsA~Vlf~~~~qk~~   84 (222)
T 2bo9_B            5 PTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQKQVKVNCTAEVLYPSTGQETA   84 (222)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTCCCEEEEEEEEEEECTTCCCC
T ss_pred             CcchHHHHHHHHHHHHhhcccCCCceeeehhhhhhhhhhhccCCCcEEEEEEEeeeeecCCceeEEEEEEEEccCCCCCC
Confidence            445567899999999999987765   566889999999885  7899999999883   55789999998753 33444


Q ss_pred             eEEEEEec
Q 048720           88 QLWEFKHT   95 (109)
Q Consensus        88 ~l~~f~~~   95 (109)
                      --..|.|.
T Consensus        85 P~Vn~tc~   92 (222)
T 2bo9_B           85 PEVNFTFE   92 (222)
T ss_dssp             CEEEEEES
T ss_pred             CceEEEEe
Confidence            44445544

>1kwi_A Protegrin-3 precursor; cathelicidin motif, disulfide, MAD, selenocystine, antimicrobial protein; 2.19A {Sus scrofa} SCOP: d.17.1.3 PDB: 1lxe_A 1n5h_A 1n5p_A 1pfp_A

Probab=92.88  E-value=0.92  Score=29.04  Aligned_cols=68  Identities=10%  Similarity=0.061  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEee----eeEeEEEEEEEeeC------------------ceeeEEEEE
Q 048720           20 ADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVV----AGKLYCFILQVIKN------------------VKKKIYEAK   77 (109)
Q Consensus        20 ~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVV----aG~nY~l~v~~~~~------------------~~~~~y~~~   77 (109)
                      ..++++...||+.||+++... .+++.+.+.-+-.    -|+.+.+.|.+.++                  |--+.|...
T Consensus         3 lsY~EAv~~Av~~~N~~S~~~-nlFRLl~~~p~p~~~~d~~~~~~v~FtIkETvC~~~~~~~p~~CdFke~G~vk~C~Gt   81 (101)
T 1kwi_A            3 LSYREAVLRAVDRLNEQSSEA-NLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGT   81 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSS-EEEEEEEEC---------CCCEEEEEEEEEEEEESSCCSCGGGSCBCTTCCEEEEEEE
T ss_pred             cCHHHHHHHHHHHHhcCCCcc-ceeeeecccCCCccCCCCCCcceeEEEEeeeecCCCCCCCcccCCccCCCeeeeceEE
Confidence            458899999999999997654 2334444444332    35778888888764                  234678888


Q ss_pred             EEEecCCCcee
Q 048720           78 ISVKSWNKFKQ   88 (109)
Q Consensus        78 Vw~~PW~~~~~   88 (109)
                      |.-.+......
T Consensus        82 v~~~~~~~~~~   92 (101)
T 1kwi_A           82 VTLDQIKDPLD   92 (101)
T ss_dssp             ECCC----CCE
T ss_pred             EEecCCCceEE
Confidence            87665444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d1eqka_	102	d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza	4e-21
d1roaa_	111	d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [Ta	2e-11
d1cewi_	108	d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [T	2e-09
d1r4ca_	110	d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [Ta	2e-09

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

 Score = 78.4 bits (193), Expect = 4e-21
 Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 6  LLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQV 65
          +L GV     N  +  +     F++ EHNKK N+LLEF +++  K QVVAG LY F ++V
Sbjct: 8  VLGGVEPV-GNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEV 66

Query: 66 IKNVKKKIYEAKISVKSWNKFKQLWEFKH 94
           +   KK+YEAK+  K W  FK+L EFK 
Sbjct: 67 KEGDAKKLYEAKVWEKPWMDFKELQEFKP 95

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 2e-11
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 23/98 (23%)

Query: 19  NADVEGFVHFSIQEHNKKENA---LLEFARVLKAKVQVVAGKLYCFILQVIK-------- 67
           +  V+  + F+I E+NK  N         +V+ A  Q+V G  Y F ++  +        
Sbjct: 10  DKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQP 69

Query: 68  ------------NVKKKIYEAKISVKSWNKFKQLWEFK 93
                         +++    +I+   W     +  +K
Sbjct: 70  NLDNCPFNDQPKLKEEEFCSFQINEVPWEDKISILNYK 107

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.9 bits (116), Expect = 2e-09
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 22/100 (22%)

Query: 16  NRKNADVEGFVHFSIQEHNKKENALLEFA--RVLKAKVQVVAGKLYCFILQVI------- 66
           +  +  ++  + F++ E+N+  N        RV+ AK Q+V+G  Y   +++        
Sbjct: 7   DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTTCPKS 66

Query: 67  -------------KNVKKKIYEAKISVKSWNKFKQLWEFK 93
                        +  K       +    W    +L E K
Sbjct: 67  SGDLQSCEFHDEPEMAKYTTCTFVVYSIPWLNQIKLLESK 106

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 2e-09
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 22/97 (22%)

Query: 19  NADVEGFVHFSIQEHNKKENALLEFA--RVLKAKVQVVAGKLY----------------- 59
              V   + F++ E+NK  N +      +V++A+ Q+VAG  Y                 
Sbjct: 10  EEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPN 69

Query: 60  ---CFILQVIKNVKKKIYEAKISVKSWNKFKQLWEFK 93
              C         +K     +I    W     L +  
Sbjct: 70  LDNCPFHDQPHLKRKAFCSFQIYAVPWQGTMTLSKST 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1eqka_	102	Phytocystatin {Japanese rice (Oryza sativa), subsp	100.0
d1roaa_	111	Cystatin D {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1r4ca_	110	Cystatin C {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1cewi_	108	Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}	99.93
d1stfi_	98	Cystatin B (stefin B) {Human (Homo sapiens) [TaxId	99.74
d1nb5i_	98	Cystatin A (stefin A) {Human (Homo sapiens) [TaxId	99.7
d1kwia_	98	Cathelicidin motif of protegrin-3 {Pig (Sus scrofa	99.51
d2bo9b1	98	Latexin {Human (Homo sapiens) [TaxId: 9606]}	97.44
d2o9ux1	96	Monellin, B & A chains together {Serendipity berry	93.82

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

Probab=100.00  E-value=4.9e-35  Score=190.98  Aligned_cols=95  Identities=42%  Similarity=0.668  Sum_probs=91.3

Q ss_pred             ecccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeEeEEEEEEEeeCceeeEEEEEEEEecCC
Q 048720            5 LLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVKSWN   84 (109)
Q Consensus         5 ~~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~nY~l~v~~~~~~~~~~y~~~Vw~~PW~   84 (109)
                      .++|||+++. |++||+++++++||+.+||+++++.|+|++|++|++|||||+||+|+|++.++++.+.|+++||++||+
T Consensus         7 ~l~GG~~~i~-d~nd~~v~e~a~~Av~~~N~~~~~~~~~vkV~~a~~QVVaG~~Y~i~v~~~~~~~~k~c~~~Vw~~pW~   85 (102)
T d1eqka_           7 PVLGGVEPVG-NENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWM   85 (102)
T ss_dssp             SCSSSSEEEC-CTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEESSSEEEEEEEEEEETTCCEEEEEEEEEBTTT
T ss_pred             cccCCcccCC-CCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEEEeeeeccceeEEEEEEEccCCccEEEEEEEEEeeCC
Confidence            5899999986 689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEEecCCCCC
Q 048720           85 KFKQLWEFKHTKHGPF  100 (109)
Q Consensus        85 ~~~~l~~f~~~~~~~~  100 (109)
                      ++++|++|+|+..++|
T Consensus        86 ~~~~l~~f~~~~~~~~  101 (102)
T d1eqka_          86 DFKELQEFKPVDASAN  101 (102)
T ss_dssp             TBCCEEEEECCCCCCC
T ss_pred             CccEEEEEEEcCCCCC
Confidence            9999999999988776

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=152.29  Aligned_cols=86  Identities=21%  Similarity=0.298  Sum_probs=78.2

Q ss_pred             cceeecCCCCCCHHHHHHHHHHHHHHHhhcCC-c--eeEEEEEEEEEEeeeeEeEEEEEEEeeC----------------
Q 048720            8 QGVYDYGSNRKNADVEGFVHFSIQEHNKKENA-L--LEFARVLKAKVQVVAGKLYCFILQVIKN----------------   68 (109)
Q Consensus         8 GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~-~--~~~~kVv~a~~QVVaG~nY~l~v~~~~~----------------   68 (109)
                      |||+++  |++||+++++++||+.+||+++|. .  +++++|++|++|||||++|+|+++++++                
T Consensus         1 GG~~~~--~~~d~~v~~~~~~Av~~~N~~sn~~~~~~~l~~V~~a~~QVVaG~~Y~l~~~i~~T~C~K~~~~~~~c~~~~   78 (111)
T d1roaa_           1 GGIHAT--DLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFND   78 (111)
T ss_dssp             CCEEEE--CTTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTSSCCSSCCBCC
T ss_pred             CCCccC--CCCCHHHHHHHHHHHHHHHHhcCCccceeEEEEEEEEEEEEecCcEEEEEEEEEeccccccccccccccccc
Confidence            899999  699999999999999999999874 3  5789999999999999999999999753                


Q ss_pred             ----ceeeEEEEEEEEecCCCceeEEEEEec
Q 048720           69 ----VKKKIYEAKISVKSWNKFKQLWEFKHT   95 (109)
Q Consensus        69 ----~~~~~y~~~Vw~~PW~~~~~l~~f~~~   95 (109)
                          ++...|+++||++||+++.+|++++|.
T Consensus        79 ~~~~~~~~~C~~~V~~~PW~~~~~v~~~~C~  109 (111)
T d1roaa_          79 QPKLKEEEFCSFQINEVPWEDKISILNYKCR  109 (111)
T ss_dssp             STTCCCCEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             CccccceEEEEEEEEEcccCCceEEeecccc
Confidence                246789999999999999999999985

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-25  Score=147.41  Aligned_cols=87  Identities=22%  Similarity=0.309  Sum_probs=79.2

Q ss_pred             cceeecCCCCCCHHHHHHHHHHHHHHHhhcCCce--eEEEEEEEEEEeeeeEeEEEEEEEeeC-----------------
Q 048720            8 QGVYDYGSNRKNADVEGFVHFSIQEHNKKENALL--EFARVLKAKVQVVAGKLYCFILQVIKN-----------------   68 (109)
Q Consensus         8 GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~--~~~kVv~a~~QVVaG~nY~l~v~~~~~-----------------   68 (109)
                      |||.++  +.+||+++++++||+.+||+++++.+  ++.+|++|++|||+|++|+|++++.++                 
T Consensus         1 Gg~~~~--~~~d~~v~~~~~~Av~~~N~~s~~~~~~~~~kV~~a~~QvVaG~~Y~l~~~i~~T~C~k~~~~~~~c~~~~~   78 (110)
T d1r4ca_           1 GGPMDA--SVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQ   78 (110)
T ss_dssp             CCCEEC--CTTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEETTSSCGGGCCBCCS
T ss_pred             CCCccC--CCCCHHHHHHHHHHHHHHHhhCCccceeEEEEEEEEEEEeccCCEEEEEEEEeecccccCccccccCccccC
Confidence            899999  69999999999999999999988874  679999999999999999999999753                 


Q ss_pred             ---ceeeEEEEEEEEecCCCceeEEEEEecC
Q 048720           69 ---VKKKIYEAKISVKSWNKFKQLWEFKHTK   96 (109)
Q Consensus        69 ---~~~~~y~~~Vw~~PW~~~~~l~~f~~~~   96 (109)
                         .+...|.++||++||+++.+|+++.|..
T Consensus        79 ~~~~~~~~C~~~V~~~PW~~~~~l~~~~C~~  109 (110)
T d1r4ca_          79 PHLKRKAFCSFQIYAVPWQGTMTLSKSTCQD  109 (110)
T ss_dssp             TTTCCEEEEEEEEEEEGGGTEEEEEEEEEEE
T ss_pred             ccccceEEEEEEEEEeccCCceEEeeeeccC
Confidence               2357899999999999999999999863

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=1.3e-25  Score=146.46  Aligned_cols=86  Identities=20%  Similarity=0.270  Sum_probs=78.4

Q ss_pred             cceeecCCCCCCHHHHHHHHHHHHHHHhhcCCc--eeEEEEEEEEEEeeeeEeEEEEEEEeeC-----------------
Q 048720            8 QGVYDYGSNRKNADVEGFVHFSIQEHNKKENAL--LEFARVLKAKVQVVAGKLYCFILQVIKN-----------------   68 (109)
Q Consensus         8 GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~--~~~~kVv~a~~QVVaG~nY~l~v~~~~~-----------------   68 (109)
                      ||+.++  +++||+++++++||+.+||+++++.  +++++|++|++|||+|++|+|+++++++                 
T Consensus         1 Gg~~~~--~~~d~~v~~~~~~Av~~~N~~s~~~~~~~~~~V~~a~~QVVaG~~Y~l~~~i~~T~C~k~~~~~~~c~~~~~   78 (108)
T d1cewi_           1 GAPVPV--DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTTCPKSSGDLQSCEFHDE   78 (108)
T ss_dssp             CCCEEC--CTTCHHHHHHHHHHTHHHHTTSCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETTCTTHHHHHHHHC
T ss_pred             CCCccC--CCCCHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEEeecCcEEEEEEEEEecccccccccccccccccC
Confidence            899999  6999999999999999999999987  4678999999999999999999999752                 


Q ss_pred             ---ceeeEEEEEEEEecCCCceeEEEEEec
Q 048720           69 ---VKKKIYEAKISVKSWNKFKQLWEFKHT   95 (109)
Q Consensus        69 ---~~~~~y~~~Vw~~PW~~~~~l~~f~~~   95 (109)
                         ++...|.++||++||++..+|+++.|.
T Consensus        79 ~~~~~~~~C~~~V~~~pW~~~~~v~~~~Cq  108 (108)
T d1cewi_          79 PEMAKYTTCTFVVYSIPWLNQIKLLESKCQ  108 (108)
T ss_dssp             SSCSCEEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred             cccCceEEEEEEEEEeccCCceEeeecccC
Confidence               235799999999999999999999884

>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin B (stefin B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.9e-18  Score=108.99  Aligned_cols=85  Identities=14%  Similarity=0.119  Sum_probs=76.8

Q ss_pred             ecccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeEeEEEEEEEeeCceeeEEEEEEEEe-cC
Q 048720            5 LLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVK-SW   83 (109)
Q Consensus         5 ~~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~nY~l~v~~~~~~~~~~y~~~Vw~~-PW   83 (109)
                      +|||||++..  +.+|++|+++.....+.+.++|.++...++++.++|||||+||+|+++++++.   ..+.+||.. |.
T Consensus         1 mm~GG~s~~~--~at~Eiq~i~d~Vk~~~e~k~~~k~~~f~av~yktQvVaG~NYfIKV~vg~~~---~~HlrV~~~Lp~   75 (98)
T d1stfi_           1 MMSGAPSATQ--PATAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVAGTNYFIKVHVGDED---FVHLRVFQSLPH   75 (98)
T ss_dssp             CCBSCCCCCE--ECCHHHHHHHHTTHHHHHHHHTCCCSCCEEEEEEEEESSEEEEEEEEECSSSC---EEEEEEEEECGG
T ss_pred             CcCCCCCCCC--CCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEEEEEEcceeEEEEEEeCCCc---EEEEEEeccCCC
Confidence            5789999985  78999999999999999999999998899999999999999999999999885   489999998 87


Q ss_pred             CC-ceeEEEEEe
Q 048720           84 NK-FKQLWEFKH   94 (109)
Q Consensus        84 ~~-~~~l~~f~~   94 (109)
                      .+ ..+|+++..
T Consensus        76 ~~~~l~L~~~q~   87 (98)
T d1stfi_          76 ENKPLTLSNYQT   87 (98)
T ss_dssp             GCCCCEEEEEEE
T ss_pred             CCCceEEEEEec
Confidence            76 579999863

>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin A (stefin A)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6e-17  Score=103.73  Aligned_cols=85  Identities=16%  Similarity=0.148  Sum_probs=76.6

Q ss_pred             ecccceeecCCCCCCHHHHHHHHHHHHHHHhhcCCceeEEEEEEEEEEeeeeEeEEEEEEEeeCceeeEEEEEEEEe-cC
Q 048720            5 LLLQGVYDYGSNRKNADVEGFVHFSIQEHNKKENALLEFARVLKAKVQVVAGKLYCFILQVIKNVKKKIYEAKISVK-SW   83 (109)
Q Consensus         5 ~~~GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~~~~~~~kVv~a~~QVVaG~nY~l~v~~~~~~~~~~y~~~Vw~~-PW   83 (109)
                      ||||||++..  +.+|++|++++....+...+.|.++.-++.++.++|||||+||+|+++++++.   ..+.+||.. |.
T Consensus         1 mm~GG~s~~~--~at~Eiq~I~d~Vk~~le~k~g~~~~~F~av~yktQvVAGtNYfIKV~vG~~~---~vHlrVf~~Lp~   75 (98)
T d1nb5i_           1 MIPGGLSEAK--PATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNK---YMHLKVFKSLPG   75 (98)
T ss_dssp             CCTTSCCCCE--ECCHHHHHHHHHHHHHHHHHHCCCCSCCEEEEEEEEESSEEEEEEEEECSSSC---EEEEEEEEECTT
T ss_pred             CccCCCCCCC--CCCHHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEcceeEEEEEEeCCCc---EEEEEEeccCCC
Confidence            5799999985  78999999999999999999999999999999999999999999999998885   489999998 87


Q ss_pred             CC-ceeEEEEEe
Q 048720           84 NK-FKQLWEFKH   94 (109)
Q Consensus        84 ~~-~~~l~~f~~   94 (109)
                      .+ ..+|+++..
T Consensus        76 ~~~~l~L~~~q~   87 (98)
T d1nb5i_          76 QNEDLVLTGYQV   87 (98)
T ss_dssp             SCCCCEEEEEEE
T ss_pred             CCCccEEEEEEc
Confidence            75 689999853

>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cathelicidin motif
domain: Cathelicidin motif of protegrin-3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.51  E-value=2.5e-14  Score=90.97  Aligned_cols=69  Identities=7%  Similarity=0.018  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCc--eeEEEEEEEEEEee-eeEeEEEEEEEeeC------------------ceeeEEEEEEE
Q 048720           21 DVEGFVHFSIQEHNKKENAL--LEFARVLKAKVQVV-AGKLYCFILQVIKN------------------VKKKIYEAKIS   79 (109)
Q Consensus        21 ~v~~la~~Av~~~N~~~~~~--~~~~kVv~a~~QVV-aG~nY~l~v~~~~~------------------~~~~~y~~~Vw   79 (109)
                      .+++++.+||++||+++++.  |++.+|.+++.|+| +|++|+|+|.+.++                  +..+.|.+.||
T Consensus         3 sy~eav~~Al~~~N~~s~~~~~f~l~~v~~a~~q~v~~g~~y~l~f~i~eT~C~k~~~~~~~~C~~~~~~~~~~C~~~V~   82 (98)
T d1kwia_           3 SYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVT   82 (98)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSEEEEEEEEC---------CCCEEEEEEEEEEEEESSCCSCGGGSCBCTTCCEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHcCCCCcccEEEEEEeecceeeecCCcEEEEEEEEEEeecCCcCCCChHHCccccCCcceEEEEEEE
Confidence            58999999999999998876  68899999999999 89999999999863                  24578999999


Q ss_pred             EecCCCceeE
Q 048720           80 VKSWNKFKQL   89 (109)
Q Consensus        80 ~~PW~~~~~l   89 (109)
                      ..||.+...|
T Consensus        83 ~~pw~~~~~v   92 (98)
T d1kwia_          83 LDQIKDPLDI   92 (98)
T ss_dssp             CC----CCEE
T ss_pred             EcCcCCEEEE
Confidence            9999987766

>d2bo9b1 d.17.1.5 (B:1-98) Latexin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Latexin-like
domain: Latexin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.0019  Score=39.95  Aligned_cols=65  Identities=15%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCc---eeEEEEEEEEEEeee--eEeEEEEEEEee---CceeeEEEEEEEEe
Q 048720           17 RKNADVEGFVHFSIQEHNKKENAL---LEFARVLKAKVQVVA--GKLYCFILQVIK---NVKKKIYEAKISVK   81 (109)
Q Consensus        17 ~~d~~v~~la~~Av~~~N~~~~~~---~~~~kVv~a~~QVVa--G~nY~l~v~~~~---~~~~~~y~~~Vw~~   81 (109)
                      ++.-..+++|+-|+.=+|-+.+.+   +.+.+|.+|..+++.  |-+|.|+|.+.+   +.....|.|+|+-.
T Consensus         5 psh~pA~rAA~vA~hy~N~~~GSP~rl~~L~~V~~a~~e~ip~~G~Ky~L~Fs~e~~~~~e~~~~CsA~Vlfp   77 (98)
T d2bo9b1           5 PTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQKQVKVNCTAEVLYP   77 (98)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTCCCEEEEEEEEEEE
T ss_pred             CcchHHHHHHHHHHHHhhcccCCCceeeehhHHHhhhhhhccccCcEEEEEEEhhhcccccccceeEEEEEEc
Confidence            556668889999999999987765   577899999999995  789999999988   33456899999873

>d2o9ux1 d.17.1.1 (X:1001-1096) Monellin, B & A chains together {Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Monellin
domain: Monellin, B & A chains together
species: Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]

Probab=93.82  E-value=0.3  Score=28.40  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=56.2

Q ss_pred             cceeecCCCCCCHHHHHHHHHHHHHHHhhcC-CceeEEEEEEEEE----------EeeeeEeEEEEEEEeeCceeeEEEE
Q 048720            8 QGVYDYGSNRKNADVEGFVHFSIQEHNKKEN-ALLEFARVLKAKV----------QVVAGKLYCFILQVIKNVKKKIYEA   76 (109)
Q Consensus         8 GG~~~~~~~~~d~~v~~la~~Av~~~N~~~~-~~~~~~kVv~a~~----------QVVaG~nY~l~v~~~~~~~~~~y~~   76 (109)
                      |.|.-+  |+ .|-.|.+.+|||++.|+-.. ..+.|-+|++--.          .-..|..|.|.+-+++    +.+.+
T Consensus         1 geweii--di-gpftqnlgkfavdeenkigqygrltfnkvirpcmkktiyenegfreikgyeyqlyvyasd----klfra   73 (96)
T d2o9ux1           1 GEWEII--DI-GPFTQNLGKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEGFREIKGYEYQLYVYASD----KLFRA   73 (96)
T ss_dssp             CCCEEE--CC-SHHHHHHHHHHHHHHHHHCTTCSCCEEEEEEEEEEEEEECSSSSCSEEEEEEEEEEEETT----EEC-C
T ss_pred             CCceEE--Ee-cchhhhhcceeecccccccccceeehhHHhHHHhhhhhhcccCceeccCcEEEEEEEecc----hhhhh
Confidence            568777  34 69999999999999999743 4689988887421          1236778888877665    35667


Q ss_pred             EEEEecCCCceeEEEEEe
Q 048720           77 KISVKSWNKFKQLWEFKH   94 (109)
Q Consensus        77 ~Vw~~PW~~~~~l~~f~~   94 (109)
                      .|-+.-=..-++|..|.-
T Consensus        74 disedyktrgrkllrfng   91 (96)
T d2o9ux1          74 DISEDYKTRGRKLLRFNG   91 (96)
T ss_dssp             EEEEETTTCCEEEEECCC
T ss_pred             hhhhhhhhccceeEeccC
Confidence            776653345678887753