Citrus Sinensis ID: 048794

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------
MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIYAENPRATSLSHKHCEYLASSCTFVCPYNVIQ
cHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccc
MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIYAENPRATSLSHKHCEYLASSCTFVCPYNVIQ
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MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIYAENPRATSLSHKHCEYLASSCTFVCPYNVIQ

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Pentatricopeptide repeat-containing protein At4g31850, chloroplastic Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex.probableQ9SZ52

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3SPA, chain A
Confidence level:very confident
Coverage over the Query: 85-204
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Template: 3SPA, chain A
Confidence level:very confident
Coverage over the Query: 53-169
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Template: 1W3B, chain A
Confidence level:very confident
Coverage over the Query: 480-570,644-941
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Template: 1W3B, chain A
Confidence level:very confident
Coverage over the Query: 445-571,645-908
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Template: 3FP2, chain A
Confidence level:very confident
Coverage over the Query: 437-535,550-569,611-929
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Template: 3FP2, chain A
Confidence level:very confident
Coverage over the Query: 471-569,621-956
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Template: 2GW1, chain A
Confidence level:very confident
Coverage over the Query: 404-529,573-594,605-899
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Template: 2XPI, chain A
Confidence level:very confident
Coverage over the Query: 365-471,498-569,606-937
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Template: 2XPI, chain A
Confidence level:very confident
Coverage over the Query: 331-571,645-904
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Template: 1B89, chain A
Confidence level:confident
Coverage over the Query: 347-366,382-563
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Template: 1B89, chain A
Confidence level:confident
Coverage over the Query: 137-156,172-354
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Template: 2UY1, chain A
Confidence level:probable
Coverage over the Query: 14-149,171-429
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