Citrus Sinensis ID: 048794
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 967 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | yes | no | 0.946 | 0.822 | 0.680 | 0.0 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.747 | 0.830 | 0.278 | 2e-88 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.868 | 0.766 | 0.277 | 2e-88 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.732 | 0.773 | 0.274 | 3e-79 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.708 | 0.865 | 0.280 | 5e-78 | |
| Q9LER0 | 940 | Pentatricopeptide repeat- | no | no | 0.829 | 0.853 | 0.264 | 1e-72 | |
| Q940A6 | 838 | Pentatricopeptide repeat- | no | no | 0.620 | 0.715 | 0.287 | 2e-71 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.752 | 0.802 | 0.254 | 2e-71 | |
| Q9M9X9 | 987 | Pentatricopeptide repeat- | no | no | 0.771 | 0.755 | 0.255 | 4e-71 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.549 | 0.727 | 0.307 | 1e-70 |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1310 bits (3391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/918 (68%), Positives = 755/918 (82%), Gaps = 3/918 (0%)
Query: 1 MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIH 60
M VFDLMQK+II RD +TYLTIFK+LS+KGGL++A +AL KMR GFVLNAYSYNG IH
Sbjct: 137 MAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIH 196
Query: 61 FILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRP 120
+L+S FC EA+ VY+R++ EG +PSL+TYS+LMV GKRR+I +VM LL+EME LGL+P
Sbjct: 197 LLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKP 256
Query: 121 NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIF 180
NVYTFTICIR+LGRAGKI+EAY ILKRMDDEGCGPDVVTYTVLIDALCTA +LD AKE+F
Sbjct: 257 NVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVF 316
Query: 181 LKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240
KMK H+PD+VTYITLLD+FSD +++ VK+FWS+M DG+ DVVT+TI VDALCK
Sbjct: 317 EKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKA 376
Query: 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
GN EAF LD+MR +GILPNLHTYNTLICGLLR+ R+++ALE+F NME LGV+PTAYTY
Sbjct: 377 GNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTY 436
Query: 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKN 360
I+FIDYYGKS D ALETFEKMK +GI PN+V+CNASLYSLA+ GR EAK IF GLK+
Sbjct: 437 IVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKD 496
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDE 420
G PDSVTYNMMMKCYSKVG++DEA+ LLSEM+ENGCEPDVIV+N+LI+TLYKADRVDE
Sbjct: 497 IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDE 556
Query: 421 AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480
AW+MF RMK+MKL PTVVTYNTLL+GLGK G++Q+AIELFEGM GC PNT+TFNTL
Sbjct: 557 AWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFD 616
Query: 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPD 540
CLCKN+EV LA+KML++M C PDV TYNTII+GLVK +VK+A+ FFHQM+K +YPD
Sbjct: 617 CLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPD 676
Query: 541 HITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFA 600
+TLCTLLPGVVK IEDA+++ +Y + FW+DL+G IL AG D ++ F+
Sbjct: 677 FVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFS 736
Query: 601 EKLVCNGICRD-DSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLL 659
E+LV NGICRD DS++VPII+ C+ A+ LF KFT++LGV L YN LI GLL
Sbjct: 737 ERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLL 796
Query: 660 EVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI 719
E E+ D+F +K+ GC PD++TYN LLD YGKSG+++EL +LY+EMS C+ NTI
Sbjct: 797 EADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTI 856
Query: 720 SHNIVISGLVKSNSIDKAMDLFYNLVSG-GFSPTPCTYGPLIDGLSKSGRLEEAKKLFEE 778
+HNIVISGLVK+ ++D A+DL+Y+L+S FSPT CTYGPLIDGLSKSGRL EAK+LFE
Sbjct: 857 THNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEG 916
Query: 779 MLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGR 838
MLDYGC+PNC IYNILINGFGK G+ + AC LFK+M+K G+RPDLK+YSVLVDCLCMVGR
Sbjct: 917 MLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Query: 839 VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK-KRGISPDLYTYN 897
VD+ LHYF+ELK +GL+ D + YN +INGLG+S R+EEAL LF+EMK RGI+PDLYTYN
Sbjct: 977 VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYN 1036
Query: 898 SLILNLGRAGMVEEARKL 915
SLILNLG AGMVEEA K+
Sbjct: 1037 SLILNLGIAGMVEEAGKI 1054
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Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (840), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 203/729 (27%), Positives = 351/729 (48%), Gaps = 6/729 (0%)
Query: 188 HQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAF 247
H P+ +Y +LL + C N + + + +M G+ V T V K + E +
Sbjct: 96 HCPE--SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGY 153
Query: 248 SILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYY 307
++ +MR P Y TLI ++ + L +F M+ LG +PT + + I +
Sbjct: 154 DVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGF 213
Query: 308 GKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDS 367
K AL ++MK + ++V N + S + G++ A F+ ++ +G PD
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDE 273
Query: 368 VTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCR 427
VTY M+ K ++DEAV + + +N P NT+I A + DEA+ + R
Sbjct: 274 VTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333
Query: 428 MKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEE 487
+ P+V+ YN +L+ L K G+V +A+++FE M PN T+N L+ LC+ +
Sbjct: 334 QRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-PNLSTYNILIDMLCRAGK 392
Query: 488 VDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMR-KWLYPDHITLCT 546
+D A ++ M +P+V T N ++ L K Q++ +A F +M K PD IT C+
Sbjct: 393 LDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCS 452
Query: 547 LLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCN 606
L+ G+ K G+++DA+++ + + R + L+ + + ++
Sbjct: 453 LIDGLGKVGRVDDAYKVYE-KMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQ 511
Query: 607 GICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEM 666
D ++ + + + + +F + V Y+ LIHGL++
Sbjct: 512 NCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDA-RSYSILIHGLIKAGFANE 570
Query: 667 GLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVIS 726
+LF +MK GC D YN+++DG+ K G+V + +L EEM +G +P +++ VI
Sbjct: 571 TYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVID 630
Query: 727 GLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP 786
GL K + +D+A LF S Y LIDG K GR++EA + EE++ G P
Sbjct: 631 GLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 690
Query: 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYF 846
N +N L++ K ++ A F+ M + P+ +Y +L++ LC V + + A ++
Sbjct: 691 NLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFW 750
Query: 847 EELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA 906
+E++ G+ TISY MI+GL ++G I EA +LFD K G PD YN++I L
Sbjct: 751 QEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNG 810
Query: 907 GMVEEARKL 915
+A L
Sbjct: 811 NRAMDAFSL 819
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 328 bits (840), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 237/854 (27%), Positives = 399/854 (46%), Gaps = 14/854 (1%)
Query: 64 QSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVY 123
+S F AL R+ + PS+ Y L+ + I+ + + M G P+VY
Sbjct: 104 KSSFVFGALMTTYRLCNS--NPSV--YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVY 159
Query: 124 TFTICIRILG---RAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIF 180
T C ILG ++G+ + LK M PDV T+ +LI+ LC G +++ +
Sbjct: 160 T---CNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLM 216
Query: 181 LKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240
KM+ S + P VTY T+L + G + E M + G ADV TY + + LC+
Sbjct: 217 QKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRS 276
Query: 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
+ + + +L MR I PN TYNTLI G +V A ++ N M G+ P T+
Sbjct: 277 NRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTF 336
Query: 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKN 360
ID + + +AL+ F M+ +G+ P+ VS L L + A+ + +K
Sbjct: 337 NALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 396
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDE 420
+G +TY M+ K G +DEAV LL+EM ++G +PD++ + LI+ K R
Sbjct: 397 NGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKT 456
Query: 421 AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480
A E+ CR+ + L+P + Y+TL+ + G +++AI ++E M G + TFN L+
Sbjct: 457 AKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVT 516
Query: 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRK-WLYP 539
LCK +V A + + MT P+ ++++ +I G A F +M K +P
Sbjct: 517 SLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHP 576
Query: 540 DHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILF 599
T +LL G+ K G + +A + K S++ + + + L+ + K++
Sbjct: 577 TFFTYGSLLKGLCKGGHLREAEKFLK-SLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSL 635
Query: 600 AEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLG-VTSTLEMYNYLIHGL 658
++V I D +I CR+ K + A LF K E G V MY + G+
Sbjct: 636 FGEMVQRSILPDSYTYTSLISGLCRKGKTVIAI-LFAKEAEARGNVLPNKVMYTCFVDGM 694
Query: 659 LEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT 718
+ + G+ M N G PDI T N ++DGY + G++E+ L EM + PN
Sbjct: 695 FKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNL 754
Query: 719 ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEE 778
++NI++ G K + + L+ +++ G P T L+ G+ +S LE K+ +
Sbjct: 755 TTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKA 814
Query: 779 MLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGR 838
+ G + + +N+LI+ G++ A +L K M GI D + +V L R
Sbjct: 815 FICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHR 874
Query: 839 VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNS 898
++ E+ G+ ++ Y +INGL R G I+ A + +EM I P ++
Sbjct: 875 FQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESA 934
Query: 899 LILNLGRAGMVEEA 912
++ L + G +EA
Sbjct: 935 MVRALAKCGKADEA 948
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (760), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 213/777 (27%), Positives = 362/777 (46%), Gaps = 69/777 (8%)
Query: 132 LGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPD 191
L R G +DE ++ M ++ P++ TY +++ C G +++A + K+ + PD
Sbjct: 193 LARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPD 252
Query: 192 QVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILD 251
TY +L+ + +++ + +++M G + V YT + LC ++EA +
Sbjct: 253 FFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFV 312
Query: 252 LMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSA 311
M+ + P + TY LI L +R EAL + ME G++P +TY + ID
Sbjct: 313 KMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQC 372
Query: 312 DPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYN 371
KA E +M +G++PNV++ NA + + G I +A + +++ +P++ TYN
Sbjct: 373 KFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYN 432
Query: 372 MMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDM 431
++K Y K V +A+ +L++M+E PDV+ N+LID ++ D A+ + M D
Sbjct: 433 ELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR 491
Query: 432 KLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLA 491
L P TY +++ L K +V++A +LF+ + G PN V + L+ CK +VD A
Sbjct: 492 GLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551
Query: 492 MKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRK-WLYPDHITLCTLLPG 550
ML +M +NC P+ LT+N +I+GL + ++K+A +M K L P T L+
Sbjct: 552 HLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHR 611
Query: 551 VVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICR 610
++KDG + A+ +F Q L G PD
Sbjct: 612 LLKDGDFDHAYS---------------RFQQMLSSG----TKPDAH-------------- 638
Query: 611 DDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDL 670
I+ +CR+ + L A+D+ K EN GV+ L Y+ LI G ++ T D+
Sbjct: 639 ---TYTTFIQTYCREGRLLDAEDMMAKMREN-GVSPDLFTYSSLIKGYGDLGQTNFAFDV 694
Query: 671 FTTMKNAGCAPDISTY-----NLLLDGYGKS-GRVEELLKLYEEMSFRGCKPNTISHNIV 724
M++ GC P T+ +LL YGK G EL + M F
Sbjct: 695 LKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEF------------- 741
Query: 725 ISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEML-DYG 783
D ++L +V +P +Y LI G+ + G L A+K+F+ M + G
Sbjct: 742 ----------DTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEG 791
Query: 784 CKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDAL 843
P+ +++N L++ K A ++ MI G P L+S VL+ L G +
Sbjct: 792 ISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGT 851
Query: 844 HYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900
F+ L G D +++ +I+G+G+ G +E LF+ M+K G TY+ LI
Sbjct: 852 SVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLI 908
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (750), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 205/730 (28%), Positives = 347/730 (47%), Gaps = 45/730 (6%)
Query: 112 EMERLG---LRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALC 168
M R G + P++ T+ I I RAG++D + L + +G D + +T L+ LC
Sbjct: 74 RMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLC 133
Query: 169 TAGRLDQAKEIFLK-MKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVAD---GYA 224
R A +I L+ M P+ +Y LL D + E M D G
Sbjct: 134 ADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSP 193
Query: 225 ADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEV 284
DVV+YT ++ K G+ ++A+S M GILP++ TYN++I L + +++A+EV
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253
Query: 285 FNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAE 344
N M GV P TY + Y S P +A+ +KM+ G+ P+VV+ + + L +
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313
Query: 345 TGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIV 404
GR EA+ IF+ + G P+ TY +++ Y+ G + E LL MV NG PD V
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373
Query: 405 MNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMT 464
+ LI K +VD+A +F +M+ L P VTY ++ L K G+V+ A+ FE M
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433
Query: 465 DHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVK 524
D G P + +N+L+H LC + + A +++ EM R + + +N+II KE RV
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 493
Query: 525 DAIWFFHQM-RKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDL 583
++ F M R + P+ IT TL+ G G++++A +L
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKL-------------------- 533
Query: 584 VGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLG 643
+ G+++V ++ ++ + NG C+ R + AL + K E+ G
Sbjct: 534 LSGMVSVGLKPNTVTYST--LINGYCK-----------ISRMEDAL----VLFKEMESSG 576
Query: 644 VTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELL 703
V+ + YN ++ GL + T +L+ + +G ++STYN++L G K+ ++ L
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636
Query: 704 KLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGL 763
++++ + K + NI+I L+K D+A DLF S G P TY + + +
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696
Query: 764 SKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDL 823
G LEE +LF M D GC + + N ++ + G++ A + + +
Sbjct: 697 IGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEA 756
Query: 824 KSYSVLVDCL 833
+ S+ +D L
Sbjct: 757 STASLFIDLL 766
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 275 bits (703), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 218/823 (26%), Positives = 380/823 (46%), Gaps = 21/823 (2%)
Query: 17 LSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALA-VY 75
+S + T+F+ L A+ L M G V ++ +N IH +G + ++ +Y
Sbjct: 60 VSLFHTLFRLYLSCERLYGAARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIY 119
Query: 76 KRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRA 135
++++ G+ P + + L+ + K + ++LL R+ + + T+ I L
Sbjct: 120 SKMIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRN--RV-ISIDTVTYNTVISGLCEH 176
Query: 136 GKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTY 195
G DEAY+ L M G PD V+Y LID C G F++ KA + ++
Sbjct: 177 GLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGN-------FVRAKALVDEISELNL 229
Query: 196 ITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRG 255
IT S N+ ++E + MV G+ DVVT++ ++ LCK G V E +L M
Sbjct: 230 ITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEE 289
Query: 256 EGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGK 315
+ PN TY TL+ L + + AL +++ M + G+ Y + +D K+ D +
Sbjct: 290 MSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLRE 349
Query: 316 ALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMK 375
A +TF+ + VPNVV+ A + L + G + A+ I + P+ VTY+ M+
Sbjct: 350 AEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMIN 409
Query: 376 CYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAP 435
Y K G ++EAV+LL +M + P+ T+ID L+KA + + A E+ M+ + +
Sbjct: 410 GYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEE 469
Query: 436 TVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKML 495
+ L++ L + G++++ L + M G + + + +L+ K + + A+
Sbjct: 470 NNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWA 529
Query: 496 YEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMR-KWLYPDHITLCTLLPGVVKD 554
EM R DV++YN +I G++K +V A W + MR K + PD T ++ K
Sbjct: 530 EEMQERGMPWDVVSYNVLISGMLKFGKV-GADWAYKGMREKGIEPDIATFNIMMNSQRKQ 588
Query: 555 GQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSV 614
G E +L + G + +VG + +++I +++ I + +
Sbjct: 589 GDSEGILKLWD-KMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTT 647
Query: 615 VVPIIKLFCRQKKALAAKDLFVKFTENL---GVTSTLEMYNYLIHGLLEVHATEMGLDLF 671
+ + K+A D K E L G+ + ++YN LI L ++ T+ +
Sbjct: 648 YRIFLDTSSKHKRA----DAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVM 703
Query: 672 TTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS 731
M+ G PD T+N L+ GY V + L Y M G PN ++N +I GL +
Sbjct: 704 GDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDA 763
Query: 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIY 791
I + + S G P TY LI G +K G ++ + ++ EM+ G P Y
Sbjct: 764 GLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTY 823
Query: 792 NILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLC 834
N+LI+ F G + A EL K+M K G+ P+ +Y ++ LC
Sbjct: 824 NVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLC 866
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 184/639 (28%), Positives = 308/639 (48%), Gaps = 39/639 (6%)
Query: 246 AFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFID 305
A + ++ +G+ P+ T N L+ L+R + ++ E F+ + GV P Y + I+
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAIN 281
Query: 306 YYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAP 365
+ K +A++ F KM+ G+ PNVV+ N + L GR EA + G P
Sbjct: 282 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 341
Query: 366 DSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMF 425
+TY++++K ++ ++ +A +L EM + G P+VIV N LID+ +A +++A E+
Sbjct: 342 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIK 401
Query: 426 CRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKN 485
M L+ T TYNTL+ G K GQ A L + M G N +F +++ LC +
Sbjct: 402 DLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSH 461
Query: 486 EEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAI-WFFHQMRKWLYPDHITL 544
D A++ + EM RN P T+I GL K + A+ +F + K D T
Sbjct: 462 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTS 521
Query: 545 CTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLV 604
LL G+ + G++++AFR+ K I G +R + L+ G D++ +F +++V
Sbjct: 522 NALLHGLCEAGKLDEAFRIQK-EILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMV 580
Query: 605 CNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHAT 664
G+ D+ Y+ LI GL ++
Sbjct: 581 KRGLKPDNYT------------------------------------YSILICGLFNMNKV 604
Query: 665 EMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIV 724
E + + K G PD+ TY++++DG K+ R EE + ++EM + +PNT+ +N +
Sbjct: 605 EEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL 664
Query: 725 ISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC 784
I +S + A++L ++ G SP TY LI G+S R+EEAK LFEEM G
Sbjct: 665 IRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGL 724
Query: 785 KPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALH 844
+PN Y LI+G+GK G + L ++M + P+ +Y+V++ G V +A
Sbjct: 725 EPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASR 784
Query: 845 YFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDE 883
E++ G+ D+I+Y I G + G + EA DE
Sbjct: 785 LLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 198/779 (25%), Positives = 363/779 (46%), Gaps = 51/779 (6%)
Query: 55 YNGFIHFILQSGFCREALAVYKRVVSE-GIKPSLKTYSALMVAAGKRRNIKTVMNLLEEM 113
++ I ++S + + V+K ++++ + P ++T SAL+ K R+ M L +M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218
Query: 114 ERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRL 173
+G+RP+VY +T IR L + A ++ M+ GC ++V Y VLID LC ++
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKV 278
Query: 174 DQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIF 233
+A I + +PD VTY TL+ E+ E +M+ ++ +
Sbjct: 279 WEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSL 338
Query: 234 VDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGV 293
V+ L K G +EEA +++ + G+ PNL YN LI L + + EA +F+ M +G+
Sbjct: 339 VEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGL 398
Query: 294 QPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKT 353
+P TY + ID + + AL +M G+ +V N+ + + G I A+
Sbjct: 399 RPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEG 458
Query: 354 IFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLY 413
+ N P VTY +M Y G++++A+ L EM G P + TL+ L+
Sbjct: 459 FMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLF 518
Query: 414 KADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTV 473
+A + +A ++F M + + P VTYN ++ G +EG + KA E + MT+ G P+T
Sbjct: 519 RAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTY 578
Query: 474 TFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQM 533
++ L+H LC + A + + NC + + Y +++G +E ++++A+ +M
Sbjct: 579 SYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEM 638
Query: 534 RKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGP 593
+ + L + GV+ DG ++
Sbjct: 639 VQ----RGVDLDLVCYGVLIDGSLKHK--------------------------------- 661
Query: 594 DKSILFA--EKLVCNGICRDDSVVVPIIKLFCRQ---KKALAAKDLFVKFTENLGVTSTL 648
D+ + F +++ G+ DD + +I + K+A DL + N G
Sbjct: 662 DRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMI----NEGCVPNE 717
Query: 649 EMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRV--EELLKLY 706
Y +I+GL + L + M+ P+ TY LD K G V ++ ++L+
Sbjct: 718 VTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTK-GEVDMQKAVELH 776
Query: 707 EEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS 766
+ +G NT ++N++I G + I++A +L ++ G SP TY +I+ L +
Sbjct: 777 NAI-LKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRR 835
Query: 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKS 825
+++A +L+ M + G +P+ V YN LI+G G++ A EL +M++ G+ P+ K+
Sbjct: 836 NDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (691), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 208/813 (25%), Positives = 356/813 (43%), Gaps = 67/813 (8%)
Query: 125 FTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMK 184
+ +R R G A L R+ D P TY LI A A RLD A I +M
Sbjct: 203 LNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMS 262
Query: 185 ASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVE 244
++ + D T G +E + + + + D V YT + LC+ E
Sbjct: 263 LANLRMDGFTLRCFAYSLCKVGKW---REALTLVETENFVPDTVFYTKLISGLCEASLFE 319
Query: 245 EAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFI 304
EA L+ MR LPN+ TY+TL+CG L ++ V N M + G P+ + +
Sbjct: 320 EAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLV 379
Query: 305 DYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLA------ETGRIGEAKTIFNGL 358
Y S D A + +KM G +P V N + S+ + A+ ++ +
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEM 439
Query: 359 KNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRV 418
+G + + + +C G+ ++A +++ EM+ G PD + +++ L A ++
Sbjct: 440 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 499
Query: 419 DEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTL 478
+ A+ +F MK L V TY ++ K G +++A + F M + GC PN VT+ L
Sbjct: 500 ELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTAL 559
Query: 479 LHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQM----- 533
+H K ++V A ++ M C P+++TY+ +I G K +V+ A F +M
Sbjct: 560 IHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKD 619
Query: 534 ------------RKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQ 581
P+ +T LL G K ++E+A +L ++ G + +
Sbjct: 620 VPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLD-AMSMEGCEPNQIVYD 678
Query: 582 DLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTEN 641
L+ G+ C+ K A+++ + +E+
Sbjct: 679 ALIDGL-----------------------------------CKVGKLDEAQEVKTEMSEH 703
Query: 642 LGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEE 701
G +TL Y+ LI +V ++ + + M CAP++ Y ++DG K G+ +E
Sbjct: 704 -GFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 762
Query: 702 LLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761
KL + M +GC+PN +++ +I G I+ ++L + S G +P TY LID
Sbjct: 763 AYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLID 822
Query: 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP 821
K+G L+ A L EEM + Y +I GF K + + L ++ + P
Sbjct: 823 HCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK--EFIESLGLLDEIGQDDTAP 880
Query: 822 DLKSYSVLVDCLCMVGRVDDALHYFEELK-LNGLDAD-TISYNFMINGLGRSGRIEEALS 879
L Y +L+D L R++ AL EE+ + D + +YN +I L + ++E A
Sbjct: 881 FLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQ 940
Query: 880 LFDEMKKRGISPDLYTYNSLILNLGRAGMVEEA 912
LF EM K+G+ P++ ++ SLI L R + EA
Sbjct: 941 LFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 973
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 177/576 (30%), Positives = 278/576 (48%), Gaps = 45/576 (7%)
Query: 342 LAETGRIGEAKTI---FNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVE-NG 397
+ + G GE KTI +K+ G + +M+ Y K G + L+ EM
Sbjct: 118 IGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYS 177
Query: 398 CEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAI 457
CEP N +++ L + A +F M K+ PT+ T+ ++ ++ A+
Sbjct: 178 CEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSAL 237
Query: 458 ELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGL 517
L MT HGC PN+V + TL+H L K V+ A+++L EM C PD T+N +I GL
Sbjct: 238 SLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGL 297
Query: 518 VKEQRVKDAIWFFHQMR-KWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAE 576
K R+ +A ++M + PD IT L+ G+ K G+++ A L Y+I + E
Sbjct: 298 CKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDL----FYRI-PKPE 352
Query: 577 RQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFV 636
+ L+ G +T D AK +
Sbjct: 353 IVIFNTLIHGFVTHGRLDD-----------------------------------AKAVLS 377
Query: 637 KFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKS 696
+ G+ + YN LI+G + + L++ M+N GC P++ +Y +L+DG+ K
Sbjct: 378 DMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKL 437
Query: 697 GRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTY 756
G+++E + EMS G KPNT+ N +IS K + I +A+++F + G P T+
Sbjct: 438 GKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTF 497
Query: 757 GPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK 816
LI GL + ++ A L +M+ G N V YN LIN F + G+++ A +L +M+
Sbjct: 498 NSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF 557
Query: 817 GGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEE 876
G D +Y+ L+ LC G VD A FE++ +G IS N +INGL RSG +EE
Sbjct: 558 QGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEE 617
Query: 877 ALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEA 912
A+ EM RG +PD+ T+NSLI L RAG +E+
Sbjct: 618 AVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDG 653
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 967 | ||||||
| 255548724 | 1113 | pentatricopeptide repeat-containing prot | 0.990 | 0.860 | 0.693 | 0.0 | |
| 224089372 | 1115 | predicted protein [Populus trichocarpa] | 0.903 | 0.783 | 0.709 | 0.0 | |
| 225430498 | 1113 | PREDICTED: pentatricopeptide repeat-cont | 0.831 | 0.722 | 0.722 | 0.0 | |
| 449485308 | 1113 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.977 | 0.849 | 0.670 | 0.0 | |
| 449455685 | 1113 | PREDICTED: pentatricopeptide repeat-cont | 0.977 | 0.849 | 0.669 | 0.0 | |
| 356518209 | 1113 | PREDICTED: pentatricopeptide repeat-cont | 0.863 | 0.750 | 0.690 | 0.0 | |
| 15236546 | 1112 | proton gradient regulation 3 [Arabidopsi | 0.946 | 0.822 | 0.680 | 0.0 | |
| 297802850 | 1114 | hypothetical protein ARALYDRAFT_491552 [ | 0.946 | 0.821 | 0.681 | 0.0 | |
| 357466003 | 1246 | Pentatricopeptide repeat-containing prot | 0.945 | 0.733 | 0.653 | 0.0 | |
| 326523953 | 1092 | predicted protein [Hordeum vulgare subsp | 0.942 | 0.834 | 0.535 | 0.0 |
| >gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1414 bits (3659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/960 (69%), Positives = 813/960 (84%), Gaps = 2/960 (0%)
Query: 1 MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIH 60
MVVVF+LMQ QII RDL+TYL IFK L ++GGLR+ FA KMR AGF LNAYSYNG IH
Sbjct: 143 MVVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIH 202
Query: 61 FILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRP 120
+LQSG CREAL +Y+R+V EG+KPSLKT+SALMVA GKRR+ +TV +LLEEME LGL+P
Sbjct: 203 LLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKP 262
Query: 121 NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIF 180
N+YT+TICIR+LGRAG+IDEA RI+KRM+D+GCGPDVVTYTVLIDALCTAG+LD A E+F
Sbjct: 263 NIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELF 322
Query: 181 LKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240
+KMKASSH+PD+VTYIT+LDKFSDCG++ VKEFWS+M ADGYA DV+T+TI V+ALCK
Sbjct: 323 VKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKA 382
Query: 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
GN++EAF +LD+MR +G+LPNLHTYNTLI GLLR++R+++AL++FNNME LGV PTAYTY
Sbjct: 383 GNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTY 442
Query: 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKN 360
ILFID+YGKS KALETFEKMKIRGI PN+V+CNASLYSLAE GR+ EAK IFN LK+
Sbjct: 443 ILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKS 502
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDE 420
+G APDSVTYNMMMKCYSK GQVDEA+ LLS+M EN CEPD+IV+N+LI+TLYKA RVDE
Sbjct: 503 NGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDE 562
Query: 421 AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480
AW+MFCR+KDMKLAPTVVTYNTL++GLGKEGQVQ+A+ELF MT +GC PNT+TFNT+L
Sbjct: 563 AWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILD 622
Query: 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPD 540
CLCKN+EVDLA+KMLY+MT NC PDVLT+NTII+GLV E+RV DAIW FHQM+K L PD
Sbjct: 623 CLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTPD 682
Query: 541 HITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFA 600
+TLCTLLPGVVK+G +EDAF++A+ ++++G +R+FW+DL+GGILT AG +K+ILF
Sbjct: 683 CVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFG 742
Query: 601 EKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLE 660
++LVC +C+D SV++PIIK+ C+ K+AL A+ +F++FT+ LGV TLE YN+LI G L
Sbjct: 743 DRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLG 802
Query: 661 VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS 720
VH EM +LFT MKNAGCAPD+ TYNLLLD +GKSG++ EL +LYE+M CKPNTI+
Sbjct: 803 VHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTIT 862
Query: 721 HNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEML 780
HNI+I+ LVKSNS+DKA+DLFY+LVSG FSPTPCTYGPL+DGL KSGRLEEAK+LFEEM+
Sbjct: 863 HNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMV 922
Query: 781 DYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVD 840
DYGC+PN IYNILINGFGKTGDV TACELFK+M++ GIRPDLKSY+ LV CLC GRVD
Sbjct: 923 DYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVD 982
Query: 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900
DALHYFE+LK GL D+I+YN MI+GLGRS RIEEAL+L+DEM+ RGI+PDL+TYNSLI
Sbjct: 983 DALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLI 1042
Query: 901 LNLGRAGMVEEARKLAGGNCFV--QPSEFVSSELQVIYAENPRATSLSHKHCEYLASSCT 958
LNLG AGMVE+A KL F+ +P+ F + L Y+ + + S + + C+
Sbjct: 1043 LNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCS 1102
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa] gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1406 bits (3640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/915 (70%), Positives = 785/915 (85%)
Query: 1 MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIH 60
M VFDLMQ+QII R++ TYL IFK+L ++GGLR+A ALEKMR AGFVLNAYSYNG IH
Sbjct: 143 MAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIH 202
Query: 61 FILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRP 120
F+LQSGFC+EAL VY+R+VSEG+KPSLKT+SALMVA+GKRRNIKTVM LLEEME +GLRP
Sbjct: 203 FLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRP 262
Query: 121 NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIF 180
N+YT+TICIR+LGR GKIDEAYRI+KRMDD+GCGPDVVTYTVLIDALCTA +LD A +F
Sbjct: 263 NIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLF 322
Query: 181 LKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240
KMK+SSH+PD+VTY+TLLDKFSDCG+++ V++ W++M ADGYA DVVT+TI V+ALCK
Sbjct: 323 TKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKA 382
Query: 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
G + EAF +LD MR +G+LPNLHTYNTLI GLLR +R+++AL++F+NME LGV+PTAYTY
Sbjct: 383 GRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTY 442
Query: 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKN 360
IL IDY+GKS PGKALETFEKMK RGI PN+V+CNASLYSLAE GR+GEAK +FN LK+
Sbjct: 443 ILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKS 502
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDE 420
SG APDSVTYNMMMKCYSKVGQVDEA+ LLSEM + CEPDVIV+N+LIDTLYKA RV+E
Sbjct: 503 SGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEE 562
Query: 421 AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480
AW+MFCRM++M LAPTVVTYN LL+GLGKEGQ+QKA++LFE M HGC PNT+TFNTLL
Sbjct: 563 AWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLD 622
Query: 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPD 540
CLCKN+EVDLA+KM Y+MT NC PDVLT+NTII+G +K+ ++K+AIW FHQM+K L PD
Sbjct: 623 CLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKLLRPD 682
Query: 541 HITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFA 600
H+TLCTLLPGV+K GQIEDAFR+ + YQ+G+ +R FW+D++GGILT AG +K+ILF
Sbjct: 683 HVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFG 742
Query: 601 EKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLE 660
E+LVC IC+DDSV++PIIK+ C+ KK A+++FVKFT+ LGV TL++YN LI G LE
Sbjct: 743 ERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLE 802
Query: 661 VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS 720
VH E+ +LF MK+AGCAPD TYN L+D +GKSG++ EL LY+EM RGCKPNTI+
Sbjct: 803 VHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTIT 862
Query: 721 HNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEML 780
+N+VIS LVKSN +DKAMDL+YNLVSG FSPTPCT+GPLIDGL KSGRL++A ++F+ M+
Sbjct: 863 YNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMV 922
Query: 781 DYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVD 840
YGC+PN IYNIL+NG+GK G V+TACE FK+M+K GIRPDLKSY++LVD LC+ GRVD
Sbjct: 923 HYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVD 982
Query: 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900
DALHYFE+LK GLD D ++YN MINGLGRS R EEALSLF EM+ RGI PDLYTYNSLI
Sbjct: 983 DALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLI 1042
Query: 901 LNLGRAGMVEEARKL 915
LNLG GM+EEA K+
Sbjct: 1043 LNLGIVGMIEEAGKI 1057
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Vitis vinifera] gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1406 bits (3639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 661/915 (72%), Positives = 785/915 (85%)
Query: 1 MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIH 60
MVVVF+LMQKQII R ++TYLTIFK L ++GGLR A ALEKMR GFVLN YSY G IH
Sbjct: 141 MVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIH 200
Query: 61 FILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRP 120
+L+SGFCREAL VY+R+VSEGIKPSLKTYSALMVA GKRR+I+TVM LL+EME LGLRP
Sbjct: 201 LLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRP 260
Query: 121 NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIF 180
N+YTFTICIRILGRAGKIDEAY ILKRMDD GCGPDVVTYTVLIDALC AG+L+ AKE+F
Sbjct: 261 NIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELF 320
Query: 181 LKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240
LKMKASSH+PD+VTYITLLDKFSD G+++ +KEFWS+M ADGY DVVT+TI +DALCKV
Sbjct: 321 LKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKV 380
Query: 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
G V+EAF LD+M+ +G+ PNLHTYNTLICGLLRL+R++EALE+FN+ME LG++ TAYTY
Sbjct: 381 GKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTY 440
Query: 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKN 360
ILFIDYYGKS + GKA++TFEKMK GIVPN+V+CNASLYSLAE GR+ EAK FNGLK
Sbjct: 441 ILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKK 500
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDE 420
G APD++TYN++M+CY K G+VD+A+ LLSEM ENGC+P+V+++N+LIDTLYKADRVDE
Sbjct: 501 CGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDE 560
Query: 421 AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480
AW+MF RMK+MKLAPTVVTYNTLL+GLGKEG+VQ+A LF+GM C PNT++FNTLL
Sbjct: 561 AWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLD 620
Query: 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPD 540
CLCKN EVDLA+KML+ MT NC+PDVLTYNT+IYGL+KE RV A W FHQM+K +YPD
Sbjct: 621 CLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKVIYPD 680
Query: 541 HITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFA 600
++TLCTLLPGV+KDG+IEDAFR+AK ++ +G A+ FW+DL+GGIL A +SILFA
Sbjct: 681 YVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQSILFA 740
Query: 601 EKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLE 660
E LVCN IC DDSV++P++K C+ KA+ A ++F+K T++ +T +LE YN LI GLL+
Sbjct: 741 ESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLK 800
Query: 661 VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS 720
TEM LF MKNAGC PD+ TYNL LD GKSG+++EL LYEEM FRGCKPNTI+
Sbjct: 801 ARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTIT 860
Query: 721 HNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEML 780
HNIVI GLVKSNS+DKA+DL+Y+L+SG FSPTP TYGPLIDGL K GRLEEAK+ FEEML
Sbjct: 861 HNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEML 920
Query: 781 DYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVD 840
DYGC PNC +YNIL+NGFGK GDVETACELF++M+K GIRPDLKSYS++VDCLCMVG+VD
Sbjct: 921 DYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVD 980
Query: 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900
DALHYFEELKL+GLD D + YN MINGLGRS R+EEALSLFDEM+ RGI+PDLYTYN+LI
Sbjct: 981 DALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALI 1040
Query: 901 LNLGRAGMVEEARKL 915
LNLG AGMVEEA K+
Sbjct: 1041 LNLGIAGMVEEAGKM 1055
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g31850, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1350 bits (3495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/957 (67%), Positives = 782/957 (81%), Gaps = 12/957 (1%)
Query: 1 MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIH 60
M VF+ MQK+II RDL TYLTIFKALS++GGLR+ + L KMR AGFVLNAYSYNG IH
Sbjct: 141 MAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIH 200
Query: 61 FILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRP 120
++QSGFC EAL VY+R+VSEG+KPSLKTYSALMVA GK+R+ + VM LL+EME LGLRP
Sbjct: 201 LLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRP 260
Query: 121 NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIF 180
NVYTFTICIR+LGRAGKIDEAY I +RMDDEGCGPD+VTYTVLIDALC AG+L+ AKE+F
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320
Query: 181 LKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240
+KMKA+ H+PDQV YITLLDKF+D G+++ KEFWSQM ADGY DVVT+TI VD LCK
Sbjct: 321 VKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKA 380
Query: 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
+ +EAF+ D+MR +GILPNLHTYNTLICGLLR R+E+AL++ + ME +GVQPTAYTY
Sbjct: 381 RDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTY 440
Query: 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKN 360
I FIDY+GKS + GKA+ETFEKMK +GIVPN+V+CNASLYSLAE GR+ EAKT+FNGL+
Sbjct: 441 ITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRE 500
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDE 420
+G APDSVTYNMMMKCYSKVGQVDEAV LLSEM+ NGCEPDVIV+N+LID+LYKA RVDE
Sbjct: 501 NGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDE 560
Query: 421 AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480
AW+MF RMKDMKL+PTVVTYNTLLSGLGKEG+VQKAIELFE M C PNT++FNTLL
Sbjct: 561 AWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLD 620
Query: 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPD 540
C CKN+EV+LA+KM +MT +C PDVLTYNT+IYGL+KE +V A WFFHQ++K ++PD
Sbjct: 621 CFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPD 680
Query: 541 HITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFA 600
H+T+CTLLPG+VK GQI DA +A+ +YQ+ R R FW+DL+GG L A DK+I+FA
Sbjct: 681 HVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFA 740
Query: 601 EKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLE 660
E+LV NGICR+DS ++P++++ C+ K+ L A +F KFT+ LG++ TL YN LI LLE
Sbjct: 741 EELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLE 800
Query: 661 VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS 720
VH TE DLF MKN GCAPD T+N+LL +GKSG++ EL +LY+EM R CKP+ I+
Sbjct: 801 VHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAIT 860
Query: 721 HNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEML 780
+NIVIS L KSN++DKA+D FY+LVS F PTP TYGPLIDGL+K GRLEEA +LFEEM
Sbjct: 861 YNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMS 920
Query: 781 DYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVD 840
DYGCKPNC I+NILING+GK GD ETAC+LFK+M+ GIRPDLKSY++LVDCLC+ GRVD
Sbjct: 921 DYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVD 980
Query: 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900
+AL+YF ELK GLD D I+YN +INGLG+S R+EEAL+L++EM+ RGI PDLYTYNSL+
Sbjct: 981 EALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLM 1040
Query: 901 LNLGRAGMVEEARK------LAGGNCFVQPSEFVSSELQVIY--AENPRATSLSHKH 949
LNLG AGMVE+A++ LAG ++P F + L Y +ENP +K+
Sbjct: 1041 LNLGLAGMVEQAKRMYEELQLAG----LEPDVFTYNALIRGYSLSENPEHAYTVYKN 1093
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1349 bits (3492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 641/957 (66%), Positives = 782/957 (81%), Gaps = 12/957 (1%)
Query: 1 MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIH 60
M VF+ MQK+II RDL TYLTIFKALS++GGLR+ + L KMR AGFVLNAYSYNG IH
Sbjct: 141 MAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIH 200
Query: 61 FILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRP 120
++QSGFC EAL VY+R+VSEG+KPSLKTYSALMVA GK+R+ + VM LL+EME LGLRP
Sbjct: 201 LLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRP 260
Query: 121 NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIF 180
NVYTFTICIR+LGRAGKIDEAY I +RMDDEGCGPD+VTYTVLIDALC AG+L+ AKE+F
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320
Query: 181 LKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240
+KMKA+ H+PDQV YITLLDKF+D G+++ KEFWSQM ADGY DVVT+TI VD LCK
Sbjct: 321 VKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKA 380
Query: 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
+ +EAF+ D+MR +GILPNLHTYNTLICGLLR R+E+AL++ ME +GVQPTAYTY
Sbjct: 381 RDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTY 440
Query: 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKN 360
+FIDY+GKS + GKA+ETFEKMK +GIVPN+V+CNASLYSLAE GR+ EAKT+FNGL+
Sbjct: 441 NIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRE 500
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDE 420
+G APDSVTYNMMMKCYSKVGQVDEAV LLSEM+ NGCEPDVIV+N+LID+LYKA RVDE
Sbjct: 501 NGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDE 560
Query: 421 AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480
AW+MF RMKDMKL+PTVVTYNTLLSGLGKEG+VQKAIELFE M + C PNT++FNTLL
Sbjct: 561 AWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLD 620
Query: 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPD 540
C CKN+EV+LA+KM +MT +C PDVLTYNT+IYGL+KE +V A WFFHQ++K ++PD
Sbjct: 621 CFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPD 680
Query: 541 HITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFA 600
H+T+CTLLPG+VK GQI DA +A+ +YQ+ R R FW+DL+GG L A DK+I+FA
Sbjct: 681 HVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFA 740
Query: 601 EKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLE 660
E+LV NGICR+DS ++P++++ C+ K+ L A +F KFT+ LG++ TL YN LI LLE
Sbjct: 741 EELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLE 800
Query: 661 VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS 720
VH TE DLF MKN GCAPD T+N+LL +GKSG++ EL +LY+EM R CKP+ I+
Sbjct: 801 VHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAIT 860
Query: 721 HNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEML 780
+NIVIS L KSN++DKA+D FY+LVS F PTP TYGPLIDGL+K GRLEEA +LFEEM
Sbjct: 861 YNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMS 920
Query: 781 DYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVD 840
DYGCKPNC I+NILING+GK GD ETAC+LFK+M+ GIRPDLKSY++LVDCLC+ GRVD
Sbjct: 921 DYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVD 980
Query: 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900
+AL+YF ELK GLD D I+YN +INGLG+S R+EEAL+L++EM+ RGI PDLYTYNSL+
Sbjct: 981 EALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLM 1040
Query: 901 LNLGRAGMVEEARK------LAGGNCFVQPSEFVSSELQVIY--AENPRATSLSHKH 949
LNLG AGMVE+A++ LAG ++P F + L Y +ENP +K+
Sbjct: 1041 LNLGLAGMVEQAKRMYEELQLAG----LEPDVFTYNALIRGYSLSENPEHAYTVYKN 1093
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1336 bits (3457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 632/915 (69%), Positives = 763/915 (83%)
Query: 1 MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIH 60
M VFDLMQKQ+INR+ +TYLTIFKALS+KGG+R+A FAL KMR AGFVLNAYSYNG I+
Sbjct: 141 MAFVFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIY 200
Query: 61 FILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRP 120
F+LQ GFC+EAL VYKR++SEG+KPS+KTYSALMVA G+RR+ T+M+LLEEME LGLRP
Sbjct: 201 FLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRP 260
Query: 121 NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIF 180
N+YT+TICIR+LGRAG+ID+AY ILK M+DEGCGPDVVTYTVLIDALC AG+LD+AKE++
Sbjct: 261 NIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELY 320
Query: 181 LKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240
KM+ASSH+PD VTYITL+ KF + G++E VK FWS+M ADGYA DVVTYTI V+ALCK
Sbjct: 321 TKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKS 380
Query: 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
G V++AF +LD+MR GI+PNLHTYNTLI GLL L R++EALE+FNNME LGV PTAY+Y
Sbjct: 381 GKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSY 440
Query: 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKN 360
+LFIDYYGK DP KAL+TFEKMK RGI+P++ +CNASLYSLAE GRI EAK IFN + N
Sbjct: 441 VLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHN 500
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDE 420
G +PDSVTYNMMMKCYSK GQ+D+A LL+EM+ GCEPD+IV+N+LIDTLYKA RVDE
Sbjct: 501 CGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDE 560
Query: 421 AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480
AW+MF R+KD+KLAPTVVTYN L++GLGKEG++ KA++LF M + GC PNTVTFN LL
Sbjct: 561 AWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLD 620
Query: 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPD 540
CLCKN+ VDLA+KM MT NC PDVLTYNTIIYGL+KE R A WF+HQM+K+L PD
Sbjct: 621 CLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPD 680
Query: 541 HITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFA 600
H+TL TLLPGVVKDG++EDA ++ ++Q G + Q W +L+ IL A +++I FA
Sbjct: 681 HVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFA 740
Query: 601 EKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLE 660
E LVCN IC+DD++++P+I++ C+QKKAL AK LF KFT++LG T E YN L+ GLL
Sbjct: 741 EGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLG 800
Query: 661 VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS 720
+ TE L LF MKNAGC P+I TYNLLLD +GKS R++EL +LY EM RGCKPN I+
Sbjct: 801 CNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIIT 860
Query: 721 HNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEML 780
HNI+IS LVKSNSI+KA+DL+Y ++SG FSPTPCTYGPLI GL K+GR EEA K+FEEM
Sbjct: 861 HNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMP 920
Query: 781 DYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVD 840
DY CKPNC IYNILINGFGK G+V AC+LFK+MIK GIRPDLKSY++LV+CL M GRVD
Sbjct: 921 DYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVD 980
Query: 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900
DA+HYFEELKL GLD DT+SYN MINGLG+S R+EEALSLF EMK RGISP+LYTYN+LI
Sbjct: 981 DAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALI 1040
Query: 901 LNLGRAGMVEEARKL 915
L+ G AGMV++A K+
Sbjct: 1041 LHFGNAGMVDQAGKM 1055
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana] gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850, chloroplastic; AltName: Full=Protein PROTON GRADIENT REGULATION 3; Flags: Precursor gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana] gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana] gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1310 bits (3391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/918 (68%), Positives = 755/918 (82%), Gaps = 3/918 (0%)
Query: 1 MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIH 60
M VFDLMQK+II RD +TYLTIFK+LS+KGGL++A +AL KMR GFVLNAYSYNG IH
Sbjct: 137 MAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIH 196
Query: 61 FILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRP 120
+L+S FC EA+ VY+R++ EG +PSL+TYS+LMV GKRR+I +VM LL+EME LGL+P
Sbjct: 197 LLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKP 256
Query: 121 NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIF 180
NVYTFTICIR+LGRAGKI+EAY ILKRMDDEGCGPDVVTYTVLIDALCTA +LD AKE+F
Sbjct: 257 NVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVF 316
Query: 181 LKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240
KMK H+PD+VTYITLLD+FSD +++ VK+FWS+M DG+ DVVT+TI VDALCK
Sbjct: 317 EKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKA 376
Query: 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
GN EAF LD+MR +GILPNLHTYNTLICGLLR+ R+++ALE+F NME LGV+PTAYTY
Sbjct: 377 GNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTY 436
Query: 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKN 360
I+FIDYYGKS D ALETFEKMK +GI PN+V+CNASLYSLA+ GR EAK IF GLK+
Sbjct: 437 IVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKD 496
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDE 420
G PDSVTYNMMMKCYSKVG++DEA+ LLSEM+ENGCEPDVIV+N+LI+TLYKADRVDE
Sbjct: 497 IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDE 556
Query: 421 AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480
AW+MF RMK+MKL PTVVTYNTLL+GLGK G++Q+AIELFEGM GC PNT+TFNTL
Sbjct: 557 AWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFD 616
Query: 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPD 540
CLCKN+EV LA+KML++M C PDV TYNTII+GLVK +VK+A+ FFHQM+K +YPD
Sbjct: 617 CLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPD 676
Query: 541 HITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFA 600
+TLCTLLPGVVK IEDA+++ +Y + FW+DL+G IL AG D ++ F+
Sbjct: 677 FVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFS 736
Query: 601 EKLVCNGICRD-DSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLL 659
E+LV NGICRD DS++VPII+ C+ A+ LF KFT++LGV L YN LI GLL
Sbjct: 737 ERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLL 796
Query: 660 EVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI 719
E E+ D+F +K+ GC PD++TYN LLD YGKSG+++EL +LY+EMS C+ NTI
Sbjct: 797 EADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTI 856
Query: 720 SHNIVISGLVKSNSIDKAMDLFYNLVSG-GFSPTPCTYGPLIDGLSKSGRLEEAKKLFEE 778
+HNIVISGLVK+ ++D A+DL+Y+L+S FSPT CTYGPLIDGLSKSGRL EAK+LFE
Sbjct: 857 THNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEG 916
Query: 779 MLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGR 838
MLDYGC+PNC IYNILINGFGK G+ + AC LFK+M+K G+RPDLK+YSVLVDCLCMVGR
Sbjct: 917 MLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Query: 839 VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK-KRGISPDLYTYN 897
VD+ LHYF+ELK +GL+ D + YN +INGLG+S R+EEAL LF+EMK RGI+PDLYTYN
Sbjct: 977 VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYN 1036
Query: 898 SLILNLGRAGMVEEARKL 915
SLILNLG AGMVEEA K+
Sbjct: 1037 SLILNLGIAGMVEEAGKI 1054
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp. lyrata] gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1309 bits (3388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/918 (68%), Positives = 755/918 (82%), Gaps = 3/918 (0%)
Query: 1 MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIH 60
M VFDLMQK+II RD +TYLTIFK LS+KGGLR+A FAL KMR GFVLNAYSYNG IH
Sbjct: 139 MAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIH 198
Query: 61 FILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRP 120
+L+S FC EA+ VY+R++ +G +PSL+TYS+LMV GKRR+I++VM LL+EME LGL+P
Sbjct: 199 LLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKP 258
Query: 121 NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIF 180
NVYTFTICIR+LGRAGKI+EAY ILKRMDDEGCGPDVVTYTVLIDALCTA +LD AKE+F
Sbjct: 259 NVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVF 318
Query: 181 LKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240
KMK H+PD+VTYITLLD+FSD +++ V +FWS+M DG+ DVVT+TI VDALCK
Sbjct: 319 AKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKA 378
Query: 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
GN EAF+ LD+MR +GILPNLHTYNTLICGLLR+ R+++ALE+F+NME LGV+PTAYTY
Sbjct: 379 GNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTY 438
Query: 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKN 360
I+FIDYYGKS D ALETFEKMK +GI PN+V+CNASLYSLA+ GR EAK IF GLK+
Sbjct: 439 IVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKD 498
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDE 420
G PDSVTYNMMMKCYSKVG++DEA+ LLSEMVEN CEPDVIV+N+LI+TLYKADRVDE
Sbjct: 499 IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDE 558
Query: 421 AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480
AW+MF RMK+MKL PTVVTYNTLL+GLGK G++Q+AIELFEGM GC PNT+TFNTL
Sbjct: 559 AWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFD 618
Query: 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPD 540
CLCKN+EV LA+KML++M C PDV TYNTII+GLVK +VK+A+ FFHQM+K +YPD
Sbjct: 619 CLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPD 678
Query: 541 HITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFA 600
+TLCTLLPGVVK G IEDA+++ +Y + FW+DL+G IL AG D ++ F+
Sbjct: 679 FVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDNAVSFS 738
Query: 601 EKLVCNGICRD-DSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLL 659
E+LV NGICRD DS++VPII+ + A A+ LF KFT++LGV L YN LI GLL
Sbjct: 739 ERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLL 798
Query: 660 EVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI 719
E E+ D+F +KN GC PD++TYN LLD YGKSG+++EL ++Y+EMS C+PNTI
Sbjct: 799 EADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTI 858
Query: 720 SHNIVISGLVKSNSIDKAMDLFYNLVSG-GFSPTPCTYGPLIDGLSKSGRLEEAKKLFEE 778
+HNIVISGLVK+ ++D A+DL+Y+L+S FSPT CTYGPLIDGLSKSGRL EAK+LFE
Sbjct: 859 THNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEG 918
Query: 779 MLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGR 838
M DYGC+PNC IYNILINGFGK G+ + AC LFK+M+K G+RPDLK+YSVLVDCLCMVGR
Sbjct: 919 MSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 978
Query: 839 VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK-RGISPDLYTYN 897
VD+ LHYF ELK +GL+ D + YN +INGLG+ R+EEAL LF+EMKK RGI+PDLYTYN
Sbjct: 979 VDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYN 1038
Query: 898 SLILNLGRAGMVEEARKL 915
SLILNLG AGMVEEA K+
Sbjct: 1039 SLILNLGIAGMVEEAGKI 1056
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1286 bits (3327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/915 (65%), Positives = 758/915 (82%), Gaps = 1/915 (0%)
Query: 1 MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIH 60
MV VFDLMQK++I R+L+TY+TIFKALS+KGG+ RA FAL KM GF+LNAYSYNG IH
Sbjct: 150 MVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIH 209
Query: 61 FILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRP 120
+L GFC EAL VYKR++SEG+KPS+KTYSALMVA G+R + + +MNLLEEM+ +GLRP
Sbjct: 210 LLL-PGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRP 268
Query: 121 NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIF 180
N+YT+TICIR LGRA +ID+A+ I K MDDEGCGPDV+TYTVLIDALC AG+LD+AKE++
Sbjct: 269 NIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELY 328
Query: 181 LKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240
+KM+ASSH PD+VTYITL+DKF G++E VK FW++M DGYA DVVTYTI ++ALCK
Sbjct: 329 VKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKS 388
Query: 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
G+V+ AF +LD+M +GI PNLHTYNT+ICGLL+ R++EALE+ NME LGV+PTA++Y
Sbjct: 389 GDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSY 448
Query: 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKN 360
+LFIDYYGKS DP KA++TFE MK RGI+P++ +CNASLY+LAETGRI EA+ IFN L
Sbjct: 449 VLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHK 508
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDE 420
G +PDSVTYNM+MKCYSK GQ+D+A LLSEM+ GCEPDV+++N+LI+TLYKA RVD
Sbjct: 509 CGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDA 568
Query: 421 AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480
AW+MF R+K++KLAPTVVTYN LL+GLGKEG++ KA+ELF MT+ GC PNT+TFN+LL
Sbjct: 569 AWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLD 628
Query: 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPD 540
CL KN+ VDLA+KM MT NC PDVLTYNTIIYGL++E R+ A WFFHQM+K+L PD
Sbjct: 629 CLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKFLSPD 688
Query: 541 HITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFA 600
++TLCTL+PGVV+ G++EDA ++ ++Q + QFW +L+ ILT A +++I FA
Sbjct: 689 YVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFA 748
Query: 601 EKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLE 660
E LVCN +C+DD V++P+IK+ C++KKAL A+++F KFT+NLG+ TLE YN L+ GLL
Sbjct: 749 EILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLG 808
Query: 661 VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS 720
+ TE L+LF MK+AG P+ TYNLLLD +GKS R+ +L LY EM RGC+PN I+
Sbjct: 809 SNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAIT 868
Query: 721 HNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEML 780
HNI+IS LVKSN+++KA+DL+Y L+SG FSPTPCTYGPLIDGL K+GR E+A K+FEEML
Sbjct: 869 HNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEML 928
Query: 781 DYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVD 840
DYGC PN VIYNILINGFGK+G+++ ACELFK+M+K GIRPDLKSY++LV+CLC+ GR+D
Sbjct: 929 DYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRID 988
Query: 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900
+A+ YFEELKL GLD DT+SYNF+INGLG+S R++EALSLF EMK RGISPDLYTYN+LI
Sbjct: 989 EAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALI 1048
Query: 901 LNLGRAGMVEEARKL 915
L+LG AG V+ A K+
Sbjct: 1049 LHLGIAGKVDVAVKM 1063
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 1025 bits (2651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/912 (53%), Positives = 677/912 (74%), Gaps = 1/912 (0%)
Query: 4 VFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFIL 63
VFDLMQ+QII ++ T+ T+F A+ ++GGLR A AL M+ AG VLNAY+YNG I+F++
Sbjct: 123 VFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLV 182
Query: 64 QSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVY 123
+SGF REA+ VYK + ++G+ P+++TYS LM+A GKRR+ +TV+ LL EME G+RPNVY
Sbjct: 183 KSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVY 242
Query: 124 TFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKM 183
++TICIR+LG+AG+++EAYRIL++M++EGC PDVVT TVLI LC AGRL AK++F KM
Sbjct: 243 SYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKM 302
Query: 184 KASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNV 243
KAS +PD+VTYITLLDK D G+ V E W+ + ADGY +VV+YT VDALC+VG V
Sbjct: 303 KASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRV 362
Query: 244 EEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILF 303
+EA + D M+ +GI+P ++YN+LI G L+ DR ALE+FN+M I G P YT++LF
Sbjct: 363 DEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLF 422
Query: 304 IDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGF 363
I+Y+GKS + KAL+ +E MK +GIVP+VV+ NA LY LA+TGR+G AK +F+ LK G
Sbjct: 423 INYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGI 482
Query: 364 APDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWE 423
+PD++TY MM+KC SK DEA+ + +EM+EN C PDV+ MN+LID LYKA R +EAW+
Sbjct: 483 SPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWK 542
Query: 424 MFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLC 483
+F +K+M L PT TYNTLL+GLG+EG+V++ ++L EGM + PN +T+NT+L CLC
Sbjct: 543 IFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLC 602
Query: 484 KNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHIT 543
KN EV+ A+ MLY MT C PD+ +YNT++YGLVKE R+ +A W F QM+K L PD+ T
Sbjct: 603 KNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKKVLAPDYAT 662
Query: 544 LCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKL 603
+CT+LP V+ G +++A + I Q ++ +R L+ GIL G +KSI FAE +
Sbjct: 663 VCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENI 722
Query: 604 VCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHA 663
+G+ DD + PII+ FC+ K+ALAA +L KF ENLGV+ YN LI GL++
Sbjct: 723 ASSGLLLDDLFLSPIIRHFCKHKEALAAHELVKKF-ENLGVSLKTGSYNALICGLVDEDL 781
Query: 664 TEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNI 723
++ +LF+ MK GC PD TY+L+LD GKS R+E++LK+ EEM +G K +++N
Sbjct: 782 IDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNT 841
Query: 724 VISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYG 783
+ISGLVKS +D+A++L+Y L+S GFSPTPCTYGPL+DGL K G +E+A+ LF+EML+ G
Sbjct: 842 IISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG 901
Query: 784 CKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDAL 843
C+PNC IYNIL+NG+ GD E CELF+ M++ G+ PD+KSY+V++D LC GR++D L
Sbjct: 902 CEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGL 961
Query: 844 HYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903
YF++L GL+ D I+YN +I+GLG+SGR+EEALSL+++M+K+GI+P+LYTYNSLIL L
Sbjct: 962 SYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYL 1021
Query: 904 GRAGMVEEARKL 915
G+AG EA K+
Sbjct: 1022 GKAGKAAEAGKM 1033
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 967 | ||||||
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.946 | 0.822 | 0.680 | 0.0 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.745 | 0.827 | 0.284 | 3e-85 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.523 | 0.553 | 0.304 | 6.1e-75 | |
| TAIR|locus:2827701 | 874 | AT2G17140 [Arabidopsis thalian | 0.702 | 0.776 | 0.274 | 2.3e-71 | |
| TAIR|locus:2165585 | 971 | AT5G57250 [Arabidopsis thalian | 0.836 | 0.833 | 0.269 | 2.9e-71 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.750 | 0.800 | 0.262 | 5.5e-70 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.676 | 0.857 | 0.266 | 4.9e-69 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.582 | 0.771 | 0.305 | 2.1e-68 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.630 | 0.809 | 0.270 | 5.6e-68 | |
| TAIR|locus:2095309 | 687 | AT3G09060 "AT3G09060" [Arabido | 0.665 | 0.937 | 0.266 | 2.2e-65 |
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3334 (1178.7 bits), Expect = 0., P = 0.
Identities = 625/918 (68%), Positives = 755/918 (82%)
Query: 1 MVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIH 60
M VFDLMQK+II RD +TYLTIFK+LS+KGGL++A +AL KMR GFVLNAYSYNG IH
Sbjct: 137 MAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIH 196
Query: 61 FILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRP 120
+L+S FC EA+ VY+R++ EG +PSL+TYS+LMV GKRR+I +VM LL+EME LGL+P
Sbjct: 197 LLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKP 256
Query: 121 NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIF 180
NVYTFTICIR+LGRAGKI+EAY ILKRMDDEGCGPDVVTYTVLIDALCTA +LD AKE+F
Sbjct: 257 NVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVF 316
Query: 181 LKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240
KMK H+PD+VTYITLLD+FSD +++ VK+FWS+M DG+ DVVT+TI VDALCK
Sbjct: 317 EKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKA 376
Query: 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
GN EAF LD+MR +GILPNLHTYNTLICGLLR+ R+++ALE+F NME LGV+PTAYTY
Sbjct: 377 GNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTY 436
Query: 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKN 360
I+FIDYYGKS D ALETFEKMK +GI PN+V+CNASLYSLA+ GR EAK IF GLK+
Sbjct: 437 IVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKD 496
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDE 420
G PDSVTYNMMMKCYSKVG++DEA+ LLSEM+ENGCEPDVIV+N+LI+TLYKADRVDE
Sbjct: 497 IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDE 556
Query: 421 AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480
AW+MF RMK+MKL PTVVTYNTLL+GLGK G++Q+AIELFEGM GC PNT+TFNTL
Sbjct: 557 AWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFD 616
Query: 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPD 540
CLCKN+EV LA+KML++M C PDV TYNTII+GLVK +VK+A+ FFHQM+K +YPD
Sbjct: 617 CLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPD 676
Query: 541 HITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFA 600
+TLCTLLPGVVK IEDA+++ +Y + FW+DL+G IL AG D ++ F+
Sbjct: 677 FVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFS 736
Query: 601 EKLVCNGICRD-DSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLL 659
E+LV NGICRD DS++VPII+ C+ A+ LF KFT++LGV L YN LI GLL
Sbjct: 737 ERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLL 796
Query: 660 EVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI 719
E E+ D+F +K+ GC PD++TYN LLD YGKSG+++EL +LY+EMS C+ NTI
Sbjct: 797 EADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTI 856
Query: 720 SHNIVISGLVKSNSIDKAMDLFYNLVSG-GFSPTPCTYGPLIDGLSKSGRLEEAKKLFEE 778
+HNIVISGLVK+ ++D A+DL+Y+L+S FSPT CTYGPLIDGLSKSGRL EAK+LFE
Sbjct: 857 THNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEG 916
Query: 779 MLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGR 838
MLDYGC+PNC IYNILINGFGK G+ + AC LFK+M+K G+RPDLK+YSVLVDCLCMVGR
Sbjct: 917 MLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Query: 839 VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK-KRGISPDLYTYN 897
VD+ LHYF+ELK +GL+ D + YN +INGLG+S R+EEAL LF+EMK RGI+PDLYTYN
Sbjct: 977 VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYN 1036
Query: 898 SLILNLGRAGMVEEARKL 915
SLILNLG AGMVEEA K+
Sbjct: 1037 SLILNLGIAGMVEEAGKI 1054
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
Identities = 208/731 (28%), Positives = 353/731 (48%)
Query: 188 HQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAF 247
H P+ +Y +LL + C N + + + +M G+ V T V K + E +
Sbjct: 96 HCPE--SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGY 153
Query: 248 SILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYY 307
++ +MR P Y TLI ++ + L +F M+ LG +PT + + I +
Sbjct: 154 DVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGF 213
Query: 308 GKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDS 367
K AL ++MK + ++V N + S + G++ A F+ ++ +G PD
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDE 273
Query: 368 VTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCR 427
VTY M+ K ++DEAV + + +N P NT+I A + DEA+ + R
Sbjct: 274 VTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333
Query: 428 MKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEE 487
+ P+V+ YN +L+ L K G+V +A+++FE M PN T+N L+ LC+ +
Sbjct: 334 QRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-PNLSTYNILIDMLCRAGK 392
Query: 488 VDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMR-KWLYPDHITLCT 546
+D A ++ M +P+V T N ++ L K Q++ +A F +M K PD IT C+
Sbjct: 393 LDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCS 452
Query: 547 LLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCN 606
L+ G+ K G+++DA+++ + + R + L+ + + ++ N
Sbjct: 453 LIDGLGKVGRVDDAYKVYE-KMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMI-N 510
Query: 607 GICRDDSVVVPIIKLFCRQKKALAAKD--LFVKFTENLGVTSTLEMYNYLIHGLLEVHAT 664
C D ++ + C K K +F + V Y+ LIHGL++
Sbjct: 511 QNCSPDLQLLNTY-MDCMFKAGEPEKGRAMFEEIKARRFVPDA-RSYSILIHGLIKAGFA 568
Query: 665 EMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIV 724
+LF +MK GC D YN+++DG+ K G+V + +L EEM +G +P +++ V
Sbjct: 569 NETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSV 628
Query: 725 ISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC 784
I GL K + +D+A LF S Y LIDG K GR++EA + EE++ G
Sbjct: 629 IDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL 688
Query: 785 KPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALH 844
PN +N L++ K ++ A F+ M + P+ +Y +L++ LC V + + A
Sbjct: 689 TPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFV 748
Query: 845 YFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904
+++E++ G+ TISY MI+GL ++G I EA +LFD K G PD YN++I L
Sbjct: 749 FWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLS 808
Query: 905 RAGMVEEARKL 915
+A L
Sbjct: 809 NGNRAMDAFSL 819
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 6.1e-75, Sum P(2) = 6.1e-75
Identities = 156/513 (30%), Positives = 250/513 (48%)
Query: 5 FDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQ 64
F+L K II Y T+ +L+ G + +M N Y+YN ++ +
Sbjct: 175 FELKYKLIIG----CYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCK 230
Query: 65 SGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYT 124
G EA ++V G+ P TY++L++ +R+++ + + EM G R N
Sbjct: 231 LGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVA 290
Query: 125 FTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMK 184
+T I L A +IDEA + +M D+ C P V TYTVLI +LC + R +A + +M+
Sbjct: 291 YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEME 350
Query: 185 ASSHQPDQVTYITLLDKF-SDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNV 243
+ +P+ TY L+D S C E +E QM+ G +V+TY ++ CK G +
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQC-KFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409
Query: 244 EEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILF 303
E+A +++LM + PN TYN LI G + V +A+ V N M V P TY
Sbjct: 410 EDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSL 468
Query: 304 IDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGF 363
ID +S + A M RG+VP+ + + + SL ++ R+ EA +F+ L+ G
Sbjct: 469 IDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV 528
Query: 364 APDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWE 423
P+ V Y ++ Y K G+VDEA +L +M+ C P+ + N LI L ++ EA
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATL 588
Query: 424 MFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLC 483
+ +M + L PTV T L+ L K+G A F+ M G P+ T+ T + C
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC 648
Query: 484 KNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYG 516
+ + A M+ +M PD+ TY+++I G
Sbjct: 649 REGRLLDAEDMMAKMRENGVSPDLFTYSSLIKG 681
|
|
| TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 194/707 (27%), Positives = 344/707 (48%)
Query: 84 KPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYR 143
KPS+ Y+ L+ + K R ++ V L ++M G+ P YTF + IR L + +D A
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168
Query: 144 ILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFS 203
+ M ++GC P+ T+ +L+ C AG D+ E+ M++ P++V Y T++ F
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFC 228
Query: 204 DCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEA---FSILDLMRGEGI-L 259
G + ++ +M +G D+VT+ + ALCK G V +A FS ++L G+
Sbjct: 229 REGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288
Query: 260 PNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALET 319
PN TYN ++ G ++ +E+A +F ++ + +Y +++ + +A
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETV 348
Query: 320 FEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSK 379
++M +GI P++ S N + L + G + +AKTI +K +G PD+VTY ++ Y
Sbjct: 349 LKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCS 408
Query: 380 VGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVT 439
VG+VD A +LL EM+ N C P+ N L+ +L+K R+ EA E+ +M + VT
Sbjct: 409 VGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVT 468
Query: 440 YNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMT 499
N ++ GL G++ KAIE+ +GM HG + L N + L L E
Sbjct: 469 CNIIVDGLCGSGELDKAIEIVKGMRVHG----SAALGNL-----GNSYIGLVDDSLIE-- 517
Query: 500 PRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMR-KWLYPDHITLCTLLPGVVKDGQIE 558
NC PD++TY+T++ GL K R +A F +M + L PD + + K G+I
Sbjct: 518 -NNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKIS 576
Query: 559 DAFRLAKCSIYQIGTRAERQFWQDLV-G-GILTVAGPDKSIL--FAEKLVCNGICRDDSV 614
AFR+ K + + G + + L+ G GI ++ EK + IC ++
Sbjct: 577 SAFRVLK-DMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTA 635
Query: 615 VVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTM 674
I+ C +K A +L + + + + + YLI +V +M ++F T
Sbjct: 636 ----IQYLCEGEKVEDATNLLDEMMQK-NIAPNVFSFKYLIEAFCKVPDFDMAQEVFETA 690
Query: 675 KNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSI 734
+ C Y+L+ + +G++ + +L E + RG + T + ++ L K + +
Sbjct: 691 VSI-CGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDEL 749
Query: 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD 781
+ A + + ++ G+ P P+IDGL K G +EA ++M++
Sbjct: 750 EVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKEANSFADKMME 796
|
|
| TAIR|locus:2165585 AT5G57250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 232/860 (26%), Positives = 398/860 (46%)
Query: 80 SEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILG---RAG 136
+ G PS T+ +L+ ++ + + +LE M + F +C ++ + G
Sbjct: 127 NHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNF-VCSAVISGFCKIG 185
Query: 137 KIDEAYRILKRMDDEGC-GPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTY 195
K + A + D G P++VTYT L+ ALC G++D+ +++ +++ + D V Y
Sbjct: 186 KPELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFY 245
Query: 196 ITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRG 255
+ + G + +MV G DVV+Y+I +D L K GNVEEA +L M
Sbjct: 246 SNWIHGYFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIK 305
Query: 256 EGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGK 315
EG+ PNL TY +I GL ++ ++EEA +FN + +G++ + Y+ ID + + +
Sbjct: 306 EGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNR 365
Query: 316 ALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMK 375
A M+ RGI P++++ N + L GR+ EA + + G D +TY+ ++
Sbjct: 366 AFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADEV-----SKGVVGDVITYSTLLD 420
Query: 376 CYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAP 435
Y KV +D + + +E D+++ N L+ EA ++ M +M L P
Sbjct: 421 SYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTP 480
Query: 436 TVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKML 495
TY T++ G K GQ+++A+E+F + V +N ++ LCK +D A ++L
Sbjct: 481 DTATYATMIKGYCKTGQIEEALEMFNELRKSSVSA-AVCYNRIIDALCKKGMLDTATEVL 539
Query: 496 YEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVV--- 552
E+ + + D+ T T+++ + K + + + + L D + L L ++
Sbjct: 540 IELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQ-LNSD-VCLGMLNDAILLLC 597
Query: 553 KDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCN-GICRD 611
K G E A +Y I R + IL + L A LV N G
Sbjct: 598 KRGSFEAAIE-----VYMIMRR--KGLTVTFPSTILKTLVDNLRSLDAYLLVVNAGETTL 650
Query: 612 DSV-VVP---IIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMG 667
S+ V+ II C++ + A +L F ++ GVT YN LI+GL +
Sbjct: 651 SSMDVIDYTIIINGLCKEGFLVKALNL-CSFAKSRGVTLNTITYNSLINGLCQQGCLVEA 709
Query: 668 LDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISG 727
L LF +++N G P TY +L+D K G + KL + M +G PN I +N ++ G
Sbjct: 710 LRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDG 769
Query: 728 LVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN 787
K + AM + + G +P T +I G K G +EEA +F E D +
Sbjct: 770 YCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISAD 829
Query: 788 CVIYNILINGFGKTGDVETACELFKQM-IKGGI-----RPDLK---SYSV---LVDCLCM 835
+ LI GF G +E A L ++M + + R D + S S+ LV+ LC
Sbjct: 830 FFGFLFLIKGFCTKGRMEEARGLLREMLVSESVVKLINRVDAELAESESIRGFLVE-LCE 888
Query: 836 VGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDE-MKKRGISPDLY 894
GRV A+ +E+ + TI Y N LG R++ + +E +KK+ D +
Sbjct: 889 QGRVPQAIKILDEI------SSTI-YPSGKN-LGSYQRLQFLNDVNEEEIKKKDYVHDFH 940
Query: 895 TYNSLILNLGRAGMVEEARK 914
+ +S + +L +G +E+A +
Sbjct: 941 SLHSTVSSLCTSGKLEQANE 960
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 195/742 (26%), Positives = 353/742 (47%)
Query: 54 SYNGFIHFILQSGFCREALAVYKRVVSE-GIKPSLKTYSALMVAAGKRRNIKTVMNLLEE 112
S++ I ++S + + V+K ++++ + P ++T SAL+ K R+ M L +
Sbjct: 158 SFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFND 217
Query: 113 MERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGR 172
M +G+RP+VY +T IR L + A ++ M+ GC ++V Y VLID LC +
Sbjct: 218 MVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQK 277
Query: 173 LDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTI 232
+ +A I + +PD VTY TL+ E+ E +M+ ++ +
Sbjct: 278 VWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSS 337
Query: 233 FVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILG 292
V+ L K G +EEA +++ + G+ PNL YN LI L + + EA +F+ M +G
Sbjct: 338 LVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIG 397
Query: 293 VQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAK 352
++P TY + ID + + AL +M G+ +V N+ + + G I A+
Sbjct: 398 LRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAE 457
Query: 353 TIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTL 412
+ N P VTY +M Y G++++A+ L EM G P + TL+ L
Sbjct: 458 GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517
Query: 413 YKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNT 472
++A + +A ++F M + + P VTYN ++ G +EG + KA E + MT+ G P+T
Sbjct: 518 FRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDT 577
Query: 473 VTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQ 532
++ L+H LC + A + + NC + + Y +++G +E ++++A+ +
Sbjct: 578 YSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQE 637
Query: 533 M-RKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVA 591
M ++ + D + L+ G +K + F L K ++ G + + + ++ +
Sbjct: 638 MVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLK-EMHDRGLKPDDVIYTSMIDA-KSKT 695
Query: 592 GPDKSILFAEKLVCNGICRDDSVV-VPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEM 650
G K L+ N C + V +I C+ A+ L K V+S +
Sbjct: 696 GDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQP---VSS---V 749
Query: 651 YNYLIHG-LLEVHAT-EMGLDLFTTMKNA---GCAPDISTYNLLLDGYGKSGRVEELLKL 705
N + +G L++ E+ + + NA G + +TYN+L+ G+ + GR+EE +L
Sbjct: 750 PNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASEL 809
Query: 706 YEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK 765
M G P+ I++ +I+ L + N + KA++L+ ++ G P Y LI G
Sbjct: 810 ITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCV 869
Query: 766 SGRLEEAKKLFEEMLDYGCKPN 787
+G + +A +L EML G PN
Sbjct: 870 AGEMGKATELRNEMLRQGLIPN 891
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 176/660 (26%), Positives = 328/660 (49%)
Query: 245 EAFSILDLMRGE-GILPNLHTYNTLICGLLRLDRVEEALEVFNNM-EILGVQPTAYTYIL 302
+A + + MR E G L TY ++I L + E EV +M E +G Y+
Sbjct: 22 KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVG 81
Query: 303 FIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSG 362
+ YG+ +A+ FE+M P V S NA + L ++G +A ++ +++ G
Sbjct: 82 AMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRG 141
Query: 363 FAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAW 422
PD ++ + MK + K + A+ LL+ M GCE +V+ T++ Y+ + E +
Sbjct: 142 ITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGY 201
Query: 423 EMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCL 482
E+F +M ++ + T+N LL L K+G V++ +L + + G PN T+N + L
Sbjct: 202 ELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGL 261
Query: 483 CKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDA-IWFFHQMRKWLYPDH 541
C+ E+D A++M+ + + PDV+TYN +IYGL K + ++A ++ + + L PD
Sbjct: 262 CQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDS 321
Query: 542 ITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAE 601
T TL+ G K G ++ A R+ +++ G ++ ++ L+ G+ ++++
Sbjct: 322 YTYNTLIAGYCKGGMVQLAERIVGDAVFN-GFVPDQFTYRSLIDGLCHEGETNRALALFN 380
Query: 602 KLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEV 661
+ + GI + + +IK Q L A L + +E G+ ++ +N L++GL ++
Sbjct: 381 EALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEK-GLIPEVQTFNILVNGLCKM 439
Query: 662 HATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISH 721
L M + G PDI T+N+L+ GY ++E L++ + M G P+ ++
Sbjct: 440 GCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTY 499
Query: 722 NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD 781
N +++GL K++ + M+ + +V G +P T+ L++ L + +L+EA L EEM +
Sbjct: 500 NSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKN 559
Query: 782 YGCKPNCVIYNILINGFGKTGDVETACELFKQMIKG-GIRPDLKSYSVLVDCLCMVGRVD 840
P+ V + LI+GF K GD++ A LF++M + + +Y++++ V
Sbjct: 560 KSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVT 619
Query: 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900
A F+E+ L D +Y M++G ++G + EM + G P L T +I
Sbjct: 620 MAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVI 679
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 177/579 (30%), Positives = 296/579 (51%)
Query: 342 LAETGRIGEAKTIFNGL---KNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVE-NG 397
+ + G GE KTI L K+ G + +M+ Y K G + L+ EM
Sbjct: 118 IGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYS 177
Query: 398 CEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAI 457
CEP N +++ L + A +F M K+ PT+ T+ ++ ++ A+
Sbjct: 178 CEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSAL 237
Query: 458 ELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGL 517
L MT HGC PN+V + TL+H L K V+ A+++L EM C PD T+N +I GL
Sbjct: 238 SLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGL 297
Query: 518 VKEQRVKDAIWFFHQMR-KWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAE 576
K R+ +A ++M + PD IT L+ G+ K G++ DA AK Y+I + E
Sbjct: 298 CKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRV-DA---AKDLFYRI-PKPE 352
Query: 577 RQFWQDLVGGILTVAGPD--KSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDL 634
+ L+ G +T D K++L ++ + GI D +I + K+ L L
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVL-SDMVTSYGIVPDVCTYNSLI--YGYWKEGLVGLAL 409
Query: 635 FVKFT-ENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGY 693
V N G + Y L+ G ++ + ++ M G P+ +N L+ +
Sbjct: 410 EVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAF 469
Query: 694 GKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP 753
K R+ E ++++ EM +GCKP+ + N +ISGL + + I A+ L +++S G
Sbjct: 470 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANT 529
Query: 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQ 813
TY LI+ + G ++EA+KL EM+ G + + YN LI G + G+V+ A LF++
Sbjct: 530 VTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEK 589
Query: 814 MIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGR 873
M++ G P S ++L++ LC G V++A+ + +E+ L G D +++N +INGL R+GR
Sbjct: 590 MLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGR 649
Query: 874 IEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEA 912
IE+ L++F +++ GI PD T+N+L+ L + G V +A
Sbjct: 650 IEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDA 688
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 168/622 (27%), Positives = 307/622 (49%)
Query: 299 TYILFIDYYGKSADPGKALETFE-KMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNG 357
T + +D D AL F K P L L +G + K I
Sbjct: 49 TDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILED 108
Query: 358 LKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVEN-GCEPDVIVMNTLIDTLYKAD 416
+K+S + T+ ++++ Y++ DE ++++ M++ G +PD N +++ L +
Sbjct: 109 MKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGN 168
Query: 417 RVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFN 476
+ +M + P V T+N L+ L + Q++ AI + E M +G P+ TF
Sbjct: 169 SLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFT 228
Query: 477 TLLHCLCKNEEVDLAMKMLYEMTPRNC-WPDVLTYNTIIYGLVKEQRVKDAIWFFHQM-- 533
T++ + ++D A+++ +M C W +V + N I++G KE RV+DA+ F +M
Sbjct: 229 TVMQGYIEEGDLDGALRIREQMVEFGCSWSNV-SVNVIVHGFCKEGRVEDALNFIQEMSN 287
Query: 534 RKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGP 593
+ +PD T TL+ G+ K G ++ A + + Q G + + ++ G+ +
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVML-QEGYDPDVYTYNSVISGLCKLGEV 346
Query: 594 DKSILFAEKLVCNGICRDDSVVV-PIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYN 652
+++ ++++ C ++V +I C++ + A +L T G+ + +N
Sbjct: 347 KEAVEVLDQMITRD-CSPNTVTYNTLISTLCKENQVEEATELARVLTSK-GILPDVCTFN 404
Query: 653 YLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFR 712
LI GL + ++LF M++ GC PD TYN+L+D G+++E L + ++M
Sbjct: 405 SLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 464
Query: 713 GCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEA 772
GC + I++N +I G K+N +A ++F + G S TY LIDGL KS R+E+A
Sbjct: 465 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDA 524
Query: 773 KKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDC 832
+L ++M+ G KP+ YN L+ F + GD++ A ++ + M G PD+ +Y L+
Sbjct: 525 AQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 584
Query: 833 LCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP- 891
LC GRV+ A +++ G++ +YN +I GL R + EA++LF EM ++ +P
Sbjct: 585 LCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPP 644
Query: 892 DLYTYNSLILNL-GRAGMVEEA 912
D +Y + L G + EA
Sbjct: 645 DAVSYRIVFRGLCNGGGPIREA 666
|
|
| TAIR|locus:2095309 AT3G09060 "AT3G09060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 2.2e-65, P = 2.2e-65
Identities = 173/650 (26%), Positives = 321/650 (49%)
Query: 222 GYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEA 281
GYA V Y + L + V I++L+R + + ++I + ++A
Sbjct: 38 GYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQA 97
Query: 282 LEVFNNM-EILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLY 340
L+VF M EI G +P +Y ++ + ++ K F + G+ PN+ + N +
Sbjct: 98 LDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIK 157
Query: 341 SLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEP 400
+ +A+ + + GF PD +Y+ ++ +K G++D+A+ L EM E G P
Sbjct: 158 MSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAP 217
Query: 401 DVIVMNTLIDTLYKADRVDEAWEMFCRM-KDMKLAPTVVTYNTLLSGLGKEGQVQKAIEL 459
DV N LID K A E++ R+ +D + P V T+N ++SGL K G+V +++
Sbjct: 218 DVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKI 277
Query: 460 FEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVK 519
+E M + + T+++L+H LC VD A + E+ R DV+TYNT++ G +
Sbjct: 278 WERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCR 337
Query: 520 EQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQF 579
++K+++ + M + ++ L+ G++++G+I++A + + + G A++
Sbjct: 338 CGKIKESLELWRIMEHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAK-GYAADKTT 396
Query: 580 WQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFT 639
+ + G+ +K++ +++ +G D II C++K+ A +L VK
Sbjct: 397 YGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNL-VKEM 455
Query: 640 ENLGVTSTLEMYNYLIHGLL-EVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGR 698
GV + N LI GL+ + E L KN GC P + +YN+L+ G K+G+
Sbjct: 456 SKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKN-GCRPTVVSYNILICGLCKAGK 514
Query: 699 VEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGP 758
E +EM G KP+ +++I++ GL + ID A++L++ + G +
Sbjct: 515 FGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNI 574
Query: 759 LIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGG 818
LI GL G+L++A + M C N V YN L+ GF K GD A ++ M K G
Sbjct: 575 LIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMG 634
Query: 819 IRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868
++PD+ SY+ ++ LCM V A+ +F++ + +G+ ++N ++ +
Sbjct: 635 LQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRAV 684
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SZ52 | PP344_ARATH | No assigned EC number | 0.6808 | 0.9462 | 0.8228 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 967 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-40 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-28 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-25 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-21 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-21 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 6e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-40
Identities = 120/521 (23%), Positives = 226/521 (43%), Gaps = 30/521 (5%)
Query: 18 STYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKR 77
S+ L K L KG + + G V +A +LA Y
Sbjct: 305 SSRLPNVKGLR-KGVSSATNSLSLDKKNNG-VKDAELPGQSSGQAASDVEEENSLAAYNG 362
Query: 78 VVSEG--IKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGL--RPNVYT---FTICIR 130
VS + Y+ L+ IK ++LLE+ME+ GL +Y F C
Sbjct: 363 GVSGKRKSPEYIDAYNRLLRDG----RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKAC-- 416
Query: 131 ILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQP 190
+ + EA+R K + + P + T+ +L+ ++ +D A + ++ + +
Sbjct: 417 --KKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA 470
Query: 191 DQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSIL 250
D Y TL+ + G ++ + E + +MV G A+V T+ +D + G V +AF
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 251 DLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNM--EILGVQPTAYTYILFIDYYG 308
+MR + + P+ +N LI + V+ A +V M E + P T +
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 309 KSADPGKALETFEKMK---IRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAP 365
+ +A E ++ + I+G P V + ++ S ++ G A +I++ +K G P
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKG-TPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKP 647
Query: 366 DSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMF 425
D V ++ ++ G +D+A +L + + G + + ++L+ A +A E++
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
Query: 426 CRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKN 485
+K +KL PTV T N L++ L + Q+ KA+E+ M G PNT+T++ LL +
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767
Query: 486 EEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDA 526
++ D+ + +L + P+++ I GL + K
Sbjct: 768 DDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLRRFEKAC 807
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-28
Identities = 169/810 (20%), Positives = 295/810 (36%), Gaps = 147/810 (18%)
Query: 56 NGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNL----LE 111
N + + G +AL + + + + Y AL +R ++ + L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 112 EMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAG 171
LG+R ++ +R G++ A+ + +M + D+ ++ VL+ AG
Sbjct: 115 SHPSLGVRLGNAMLSMFVRF----GELVHAWYVFGKMPER----DLFSWNVLVGGYAKAG 166
Query: 172 RLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVV---KEFWSQMVADGYAADVV 228
D+A ++ +M + +PD T+ +L CG I + +E + +V G+ DV
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVL---RTCGGIPDLARGREVHAHVVRFGFELDVD 223
Query: 229 TYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNM 288
+ K G+V A + D M + ++N +I G E LE+F M
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTM 279
Query: 289 EILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRI 348
L V P T I D E + G +V CN+ + G
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339
Query: 349 GEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTL 408
GEA+ +F+ ++ D+V++ M+ Y K G D+A+ + M ++ PD I
Sbjct: 340 GEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI----- 390
Query: 409 IDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGC 468
T ++LS G + ++L E G
Sbjct: 391 ------------------------------TIASVLSACACLGDLDVGVKLHELAERKGL 420
Query: 469 FPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIW 528
V N L+ K + +D A+++ + + P DV+++ +II GL R +A+
Sbjct: 421 ISYVVVANALIEMYSKCKCIDKALEVFHNI-PEK---DVISWTSIIAGLRLNNRCFEALI 476
Query: 529 FFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGIL 588
FF QM L P+ +TL L + G A K +I R
Sbjct: 477 FFRQMLLTLKPNSVTLIAALSACARIG----ALMCGK----EIHAHVLR----------- 517
Query: 589 TVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTL 648
GI D + ++ L+ R + A + F ++ V S
Sbjct: 518 -----------------TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD--VVS-- 556
Query: 649 EMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEE 708
+N L+ G + M ++LF M +G PD T+ LL +SG V + L+ +
Sbjct: 557 --WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614
Query: 709 MSFR-GCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG 767
M + PN + H Y ++D L ++G
Sbjct: 615 MEEKYSITPN-LKH----------------------------------YACVVDLLGRAG 639
Query: 768 RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYS 827
+L EA +M P+ ++ L+N VE EL Q I + Y
Sbjct: 640 KLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELG-ELAAQHIFELDPNSVGYYI 695
Query: 828 VLVDCLCMVGRVDDALHYFEELKLNGLDAD 857
+L + G+ D+ + ++ NGL D
Sbjct: 696 LLCNLYADAGKWDEVARVRKTMRENGLTVD 725
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 2e-28
Identities = 83/327 (25%), Positives = 154/327 (47%), Gaps = 41/327 (12%)
Query: 623 CRQKKALAAKDLFVKFTENLGVTSTLEMYNYL---------IHGLLEVHA--TEMGLD-- 669
C++++A+ K+ F +F + L TL +N L I G L V E GL
Sbjct: 416 CKKQRAV--KEAF-RFAK-LIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD 471
Query: 670 --LFTT--------------------MKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYE 707
L+TT M NAG ++ T+ L+DG ++G+V + Y
Sbjct: 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 708 EMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGG--FSPTPCTYGPLIDGLSK 765
M + KP+ + N +IS +S ++D+A D+ + + P T G L+ +
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 766 SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKS 825
+G+++ AK++++ + +Y K +Y I +N + GD + A ++ M K G++PD
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885
+S LVD G +D A ++ + G+ T+SY+ ++ + ++AL L++++K
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 886 KRGISPDLYTYNSLILNLGRAGMVEEA 912
+ P + T N+LI L + +A
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKA 738
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-25
Identities = 94/415 (22%), Positives = 179/415 (43%), Gaps = 30/415 (7%)
Query: 126 TICIRI--LGRAGKIDEAYRILKRMDDEGCG--PDVVTYTVLIDALCTAGRLDQAKEIFL 181
++C +I L G+ EA + + + GC TY L++A + K ++
Sbjct: 89 SLCSQIEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYW 147
Query: 182 KMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVG 241
+++S +PDQ +L CG + + + +M ++ ++ + L G
Sbjct: 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAG 203
Query: 242 NVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYI 301
N EAF++ M +G T+ ++ L ++ + GV +
Sbjct: 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263
Query: 302 LFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNS 361
ID Y K D A F+ M + V+ N+ L A G EA ++ +++S
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 362 GFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEA 421
G + D T+++M++ +S++ ++ A + ++ G D++ L+D K R+++A
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 422 WEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHC 481
+F RM L +++N L++G G G+ KA+E+FE M G PN VTF +L
Sbjct: 380 RNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 482 LC-------KNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWF 529
C + E+ +M + + PR + Y +I L +E + +A
Sbjct: 436 -CRYSGLSEQGWEIFQSMSENHRIKPR-----AMHYACMIELLGREGLLDEAYAM 484
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 6e-23
Identities = 100/460 (21%), Positives = 199/460 (43%), Gaps = 35/460 (7%)
Query: 54 SYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEM 113
S+N I ++G C E L ++ + + P L T ++++ A + + + +
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 114 ERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRL 173
+ G +V I++ G EA ++ RM+ + D V++T +I G
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLP 370
Query: 174 DQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIF 233
D+A E + M+ + PD++T ++L + G+++V + G + VV
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 234 VDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGV 293
++ K +++A + + + ++ ++ ++I GL +R EAL F M +L +
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQM-LLTL 485
Query: 294 QPTAYTYILFIDYYGKSAD--PGK-----ALETFEKMKIRGIVPNVVSCNASLYSLAETG 346
+P + T I + + GK L T + G +PN A L G
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRT--GIGFDGFLPN-----ALLDLYVRCG 538
Query: 347 RIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMN 406
R+ A FN + D V++N+++ Y G+ AV L + MVE+G PD +
Sbjct: 539 RMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 407 TLIDTLYKADRVDEAWEMFCRMKD-MKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTD 465
+L+ ++ V + E F M++ + P + Y ++ LG+ G++ +A M
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP- 652
Query: 466 HGCFPNTVTFNTLLHCLCKNEEVD---LAMKMLYEMTPRN 502
P+ + LL+ + V+ LA + ++E+ P +
Sbjct: 653 --ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 9e-23
Identities = 65/278 (23%), Positives = 122/278 (43%), Gaps = 2/278 (0%)
Query: 640 ENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRV 699
N GV + + + LI G + M++ PD +N L+ G+SG V
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 700 EELLKLYEEMSFRG--CKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYG 757
+ + EM P+ I+ ++ + +D+A +++ + TP Y
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618
Query: 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKG 817
++ S+ G + A ++++M G KP+ V ++ L++ G GD++ A E+ + K
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 818 GIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEA 877
GI+ SYS L+ AL +E++K L + N +I L ++ +A
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738
Query: 878 LSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKL 915
L + EMK+ G+ P+ TY+ L++ R + L
Sbjct: 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-22
Identities = 134/658 (20%), Positives = 271/658 (41%), Gaps = 65/658 (9%)
Query: 263 HTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDY--YGKSADPG-----K 315
H N+ + L ++E+AL++ +M+ L V Y+ + ++ + G +
Sbjct: 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSR 111
Query: 316 ALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMK 375
AL + + +R NA L G + A +F + D ++N+++
Sbjct: 112 ALSSHPSLGVR-------LGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVG 160
Query: 376 CYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAP 435
Y+K G DEA+ L M+ G PDV ++ T + E+ +
Sbjct: 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220
Query: 436 TVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKML 495
V N L++ K G V A +F+ M C +++N ++ +N E +++
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELF 276
Query: 496 YEMTPRNCWPDVLTYNTIIY--GLVKEQRVKDAIWFFHQMRKWLYPDHITLC-TLLPGVV 552
+ M + PD++T ++I L+ ++R+ + + + +++C +L+ +
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYL 334
Query: 553 KDGQIEDAFRLAKCSIYQIGTRAERQ---FWQDLVGGILTVAGPDKSILFAEKLVCNGIC 609
G +A ++ +R E + W ++ G PDK++ + + +
Sbjct: 335 SLGSWGEA--------EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386
Query: 610 RDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLD 669
D+ + ++ C L + E G+ S + + N LI + + L+
Sbjct: 387 PDEITIASVLSA-CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445
Query: 670 LFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVIS--- 726
+F + D+ ++ ++ G + R E L + +M KPN+++ +S
Sbjct: 446 VFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACA 500
Query: 727 --GLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC 784
G + A L + GF P L+D + GR+ A F
Sbjct: 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNA-----LLDLYVRCGRMNYAWNQFN-----SH 550
Query: 785 KPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLC-MVGRVDDAL 843
+ + V +NIL+ G+ G A ELF +M++ G+ PD ++ L+ C C G V L
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSRSGMVTQGL 609
Query: 844 HYFEELKLN-GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900
YF ++ + + Y +++ LGR+G++ EA + ++M I+PD + +L+
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALL 664
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-22
Identities = 134/594 (22%), Positives = 244/594 (41%), Gaps = 59/594 (9%)
Query: 336 NASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMK-CYSKVGQVDEAVTL----L 390
N+ L +L G++ +A + ++ D Y + + C K V+E + L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA-VEEGSRVCSRAL 113
Query: 391 SEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKE 450
S G + N ++ + + AW +F +M + L ++N L+ G K
Sbjct: 114 SSHPSLGVR----LGNAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAKA 165
Query: 451 GQVQKAIELFEGMTDHGCFPNTVTFNTLLH-C-----LCKNEEVDL-AMKMLYEMTPRNC 503
G +A+ L+ M G P+ TF +L C L + EV ++ +E+
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL----- 220
Query: 504 WPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRL 563
DV N +I VK V A F +M + D I+ ++ G ++G+ + L
Sbjct: 221 --DVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLEL 275
Query: 564 AKCSIYQIGTRAERQFWQDL--VGGILTVAGPDKSILFAEKL----VCNGICRDDSVVVP 617
T E DL + +++ ++ V G D SV
Sbjct: 276 -------FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328
Query: 618 IIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNA 677
+I+++ A+ +F + V+ T + Y +GL + L+ + M+
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL-----PDKALETYALMEQD 383
Query: 678 GCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKA 737
+PD T +L G ++ +KL+E +G + N +I K IDKA
Sbjct: 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443
Query: 738 MDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILING 797
+++F+N+ ++ +I GL + R EA F +ML KPN V ++
Sbjct: 444 LEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSA 498
Query: 798 FGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD 857
+ G + E+ +++ GI D + L+D GR++ A + F N + D
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-----NSHEKD 553
Query: 858 TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEE 911
+S+N ++ G G+ A+ LF+ M + G++PD T+ SL+ R+GMV +
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-21
Identities = 117/523 (22%), Positives = 211/523 (40%), Gaps = 72/523 (13%)
Query: 51 NAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLL 110
+ +S+N + ++G+ EAL +Y R++ G++P + T+ ++ G ++ +
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 111 EEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTA 170
+ R G +V I + + G + A + RM D +++ +I
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFEN 266
Query: 171 GRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTY 230
G + E+F M+ S PD +T +++ G+ + +E +V G+A DV
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV--- 323
Query: 231 TIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEI 290
++C N+LI L L EA +VF+ ME
Sbjct: 324 -----SVC---------------------------NSLIQMYLSLGSWGEAEKVFSRMET 351
Query: 291 LGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGE 350
A ++ I Y K+ P KALET+ M+ + P+ ++ + L + A G +
Sbjct: 352 ----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407
Query: 351 AKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLID 410
+ + G V N +++ YSK +D+A+ E+ N E DVI ++I
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL----EVFHNIPEKDVISWTSIIA 463
Query: 411 TLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIE-----LFEGMTD 465
L +R EA F +M + L P VT LS + G + E L G+
Sbjct: 464 GLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522
Query: 466 HGCFPNTVTFNTLLHCLCKNEEVDLAMK---MLYEMTPRN-CWPDVLTYNTIIYGLVKEQ 521
G PN + +DL ++ M Y N DV+++N ++ G V
Sbjct: 523 DGFLPNAL--------------LDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHG 568
Query: 522 RVKDAIWFFHQMRKW-LYPDHITLCTLLPGVVKDGQIEDAFRL 563
+ A+ F++M + + PD +T +LL + G +
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 2e-21
Identities = 90/419 (21%), Positives = 171/419 (40%), Gaps = 59/419 (14%)
Query: 51 NAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLL 110
N S+ I ++ +G REA A+++ + +G +T+ ++ A+ + + L
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247
Query: 111 EEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTA 170
+ + G+ + + I + + G I++A + M ++ V + ++
Sbjct: 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALH 303
Query: 171 GRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTY 230
G ++A ++ +M+ S DQ T+ ++ FS +E K+ + ++ G+ D+V
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 231 TIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEI 290
T VD K G +E+A ++ D M + NL ++N LI G
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAG------------------- 400
Query: 291 LGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGE 350
YG KA+E FE+M G+ PN V+ A L + +G +
Sbjct: 401 ----------------YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444
Query: 351 AKTIFNGL-KNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLI 409
IF + +N P ++ Y M++ + G +DEA ++ P +N +
Sbjct: 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR------APFKPTVN-MW 497
Query: 410 DTLYKADRVDE-------AWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFE 461
L A R+ + A E M KL VV N L + G++ + K +E +
Sbjct: 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLN-LYNSSGRQAEAAKVVETLK 555
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 4e-21
Identities = 93/431 (21%), Positives = 185/431 (42%), Gaps = 25/431 (5%)
Query: 88 KTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKR 147
TY AL+ A ++I+ V + +E G P+ Y + + + G + +A R+
Sbjct: 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183
Query: 148 MDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGN 207
M + ++ ++ +I L AG +A +F +M + T++ +L + G+
Sbjct: 184 MPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239
Query: 208 IEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNT 267
++ ++ G D +D K G++E+A + D M + + +N+
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNS 295
Query: 268 LICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRG 327
++ G EEAL ++ M GV +T+ + I + + A A + + G
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 328 IVPNVVSCNA--SLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDE 385
++V+ A LYS + GR+ +A+ +F+ + +++N ++ Y G+ +
Sbjct: 356 FPLDIVANTALVDLYS--KWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTK 409
Query: 386 AVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRM-KDMKLAPTVVTYNTLL 444
AV + M+ G P+ + ++ + ++ WE+F M ++ ++ P + Y ++
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469
Query: 445 SGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLC---KNEEV-DLAMKMLYEMTP 500
LG+EG + +A M F TV L C KN E+ LA + LY M P
Sbjct: 470 ELLGREGLLDEAY----AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525
Query: 501 RNCWPDVLTYN 511
V+ N
Sbjct: 526 EKLNNYVVLLN 536
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 1e-19
Identities = 86/372 (23%), Positives = 167/372 (44%), Gaps = 19/372 (5%)
Query: 470 PNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIW- 528
P TFN L+ ++++D A+++L + D Y T+I K +V DA++
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV-DAMFE 493
Query: 529 FFHQM-RKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQI----GTRAERQFWQDL 583
FH+M + + T L+ G + GQ+ AF Y I + +R + L
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF-----GAYGIMRSKNVKPDRVVFNAL 548
Query: 584 VGGILTVAGPDKS--ILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTEN 641
+ D++ +L K + I D V ++K + AK+++ E
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 642 LGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEE 701
+ T E+Y ++ + + L ++ MK G PD ++ L+D G +G +++
Sbjct: 609 -NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667
Query: 702 LLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761
++ ++ +G K T+S++ ++ + + KA++L+ ++ S PT T LI
Sbjct: 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727
Query: 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP 821
L + +L +A ++ EM G PN + Y+IL+ + D + +L Q + GI+P
Sbjct: 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787
Query: 822 DLKSYSVLVDCL 833
+L V+ C+
Sbjct: 788 NL----VMCRCI 795
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 3e-19
Identities = 92/374 (24%), Positives = 160/374 (42%), Gaps = 45/374 (12%)
Query: 369 TYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRM 428
T+NM+M + +D A+ +L + E G + D + TLI T K+ +VD +E+F M
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 429 KDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEV 488
+ + V T+ L+ G + GQV KA + M P+ V FN L+ ++ V
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 489 DLAMKMLYEM----TPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKW-------L 537
D A +L EM P + PD +T ++ +V A + + ++ +
Sbjct: 559 DRAFDVLAEMKAETHPID--PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
Query: 538 YPDHITLCTLLPGVVKDGQIEDAFRLAKCSIY----QIGTRAERQFWQDLVGGILTVAGP 593
Y + C+ + G + A SIY + G + + F+ LV VAG
Sbjct: 617 YTIAVNSCS------QKGDWDFA-----LSIYDDMKKKGVKPDEVFFSALV----DVAGH 661
Query: 594 DKSILFAEKLVCN----GICRDDSVVVPIIKLFCRQ----KKALAAKDLFVKFTENLGVT 645
+ A +++ + GI + +V + C KKAL +L+ +++ +
Sbjct: 662 AGDLDKAFEILQDARKQGI-KLGTVSYSSLMGACSNAKNWKKAL---ELYEDI-KSIKLR 716
Query: 646 STLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKL 705
T+ N LI L E + L++ + MK G P+ TY++LL + + L L
Sbjct: 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776
Query: 706 YEEMSFRGCKPNTI 719
+ G KPN +
Sbjct: 777 LSQAKEDGIKPNLV 790
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 1e-18
Identities = 55/252 (21%), Positives = 110/252 (43%), Gaps = 2/252 (0%)
Query: 651 YNYLIHGLLEVHATEMGLDLFTTMKNAG--CAPDISTYNLLLDGYGKSGRVEELLKLYEE 708
+N LI + A + D+ MK PD T L+ +G+V+ ++Y+
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 709 MSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR 768
+ K + I ++ + D A+ ++ ++ G P + L+D +G
Sbjct: 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664
Query: 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSV 828
L++A ++ ++ G K V Y+ L+ + + A EL++ + +RP + + +
Sbjct: 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724
Query: 829 LVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG 888
L+ LC ++ AL E+K GL +TI+Y+ ++ R + L L + K+ G
Sbjct: 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784
Query: 889 ISPDLYTYNSLI 900
I P+L +
Sbjct: 785 IKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.4 bits (192), Expect = 7e-18
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 435 PTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCK 484
P VVTYNTL+ G K+G+V++A++LF M G PN T++ L+ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 2e-17
Identities = 61/234 (26%), Positives = 113/234 (48%), Gaps = 11/234 (4%)
Query: 683 ISTYNLLLDGYGKSGRVEELLKLYEEMSFRG-CKPNTISHNIVISGLVKSNSIDKAMDLF 741
I YN LL + GR+++ + L E+M RG + I H K ++ +A F
Sbjct: 374 IDAYNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR-F 428
Query: 742 YNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT 801
L+ +PT T+ L+ + S ++ A ++ + + G K +C +Y LI+ K+
Sbjct: 429 AKLIR---NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485
Query: 802 GDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISY 861
G V+ E+F +M+ G+ ++ ++ L+D G+V A + ++ + D + +
Sbjct: 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545
Query: 862 NFMINGLGRSGRIEEALSLFDEMKKRG--ISPDLYTYNSLILNLGRAGMVEEAR 913
N +I+ G+SG ++ A + EMK I PD T +L+ AG V+ A+
Sbjct: 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 3e-17
Identities = 106/510 (20%), Positives = 204/510 (40%), Gaps = 72/510 (14%)
Query: 427 RMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTV-TFNTLLHCLCKN 485
R+ D ++ + V+ + + L G+ ++A+ELFE + F T++ L+
Sbjct: 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL 136
Query: 486 EEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDH--IT 543
+ + + + + PD N ++ VK + DA F +M P+ +
Sbjct: 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM-----PERNLAS 191
Query: 544 LCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKL 603
T++ G+V G +AF L + R F V + AG S ++L
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF----VVMLRASAGLG-SARAGQQL 246
Query: 604 VC----NGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLL 659
C G+ D V +I ++ + A+ +F E V + Y +HG
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGY- 305
Query: 660 EVHATEMGLDLFTTMKNAGCAPDISTYNL------------------------------- 688
+E L L+ M+++G + D T+++
Sbjct: 306 ----SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361
Query: 689 ----LLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNL 744
L+D Y K GR+E+ +++ M + N IS N +I+G KA+++F +
Sbjct: 362 ANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERM 417
Query: 745 VSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEML-DYGCKPNCVIYNILINGFGKTGD 803
++ G +P T+ ++ SG E+ ++F+ M ++ KP + Y +I G+ G
Sbjct: 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477
Query: 804 VETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHY--FEELKLNGLDADTI-S 860
++ A + + R K + L R+ L KL G+ + + +
Sbjct: 478 LDEAYAMIR-------RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN 530
Query: 861 YNFMINGLGRSGRIEEALSLFDEMKKRGIS 890
Y ++N SGR EA + + +K++G+S
Sbjct: 531 YVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 4e-17
Identities = 25/44 (56%), Positives = 36/44 (81%)
Query: 857 DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900
D ++YN +I+G + G++EEAL LF+EMKKRGI P++YTY+ LI
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 2e-16
Identities = 94/428 (21%), Positives = 164/428 (38%), Gaps = 66/428 (15%)
Query: 16 DLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVY 75
D+S ++ + G A +M +A S+ I ++G +AL Y
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETY 377
Query: 76 KRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRA 135
+ + + P T ++++ A ++ + L E ER GL V I + +
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 136 GKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTY 195
ID+A + + ++ DV+++T +I L R +A F +M + +P+ VT
Sbjct: 438 KCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTL-KPNSVTL 492
Query: 196 IT-----------------------------------LLDKFSDCGNIEVVKEFWSQMVA 220
I LLD + CG + W+Q +
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA---WNQFNS 549
Query: 221 DGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEE 280
+ DVV++ I + G A + + M G+ P+ T+ +L+C R V +
Sbjct: 550 --HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607
Query: 281 ALEVFNNMEI-LGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASL 339
LE F++ME + P Y +D G++ +A KM I P+ A L
Sbjct: 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---PDPAVWGALL 664
Query: 340 -----YSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMM-KCYSKVGQVDEAVTLLSEM 393
+ E G + A+ IF P+SV Y +++ Y+ G+ DE + M
Sbjct: 665 NACRIHRHVELGELA-AQHIFE------LDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717
Query: 394 VENGCEPD 401
ENG D
Sbjct: 718 RENGLTVD 725
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 3e-15
Identities = 67/285 (23%), Positives = 125/285 (43%), Gaps = 13/285 (4%)
Query: 631 AKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLL 690
A+ LF + E + + +I GL++ LF M G + T+ ++L
Sbjct: 177 ARRLFDEMPERNLAS-----WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231
Query: 691 DGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS 750
G +L+ + G +T +I K I+ A +F G
Sbjct: 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF----DGMPE 287
Query: 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACEL 810
T + ++ G + G EEA L+ EM D G + ++I+I F + +E A +
Sbjct: 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 811 FKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGR 870
+I+ G D+ + + LVD GR++DA + F+ + L IS+N +I G G
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGN 403
Query: 871 SGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKL 915
GR +A+ +F+ M G++P+ T+ +++ +G+ E+ ++
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 1e-14
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 681 PDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVK 730
PD+ TYN L+DGY K G+VEE LKL+ EM RG KPN +++I+I GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-14
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 786 PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLC 834
P+ V YN LI+G+ K G VE A +LF +M K GI+P++ +YS+L+D LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 2e-14
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 365 PDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYK 414
PD VTYN ++ Y K G+V+EA+ L +EM + G +P+V + LID L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 4e-14
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 226 DVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGL 272
DVVTY +D CK G VEEA + + M+ GI PN++TY+ LI GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 4e-14
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 400 PDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGK 449
PDV+ NTLID K +V+EA ++F MK + P V TY+ L+ GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 6e-14
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 120 PNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALC 168
P+V T+ I + GK++EA ++ M G P+V TY++LID LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 9e-14
Identities = 27/50 (54%), Positives = 31/50 (62%)
Query: 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK 800
P TY LIDG K G++EEA KLF EM G KPN Y+ILI+G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-13
Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 9/225 (4%)
Query: 689 LLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGG 748
L+D Y K G +E+ +++ M + T++ N +++G ++A+ L+Y + G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 749 FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETAC 808
S T+ +I S+ LE AK+ ++ G + V L++ + K G +E A
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 809 ELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868
+F +M R +L S++ L+ GR A+ FE + G+ + +++ +++
Sbjct: 381 NVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
Query: 869 GRSGRIEEALSLFDEMKK-RGISPDLYTYNSLILNLGRAGMVEEA 912
SG E+ +F M + I P Y +I LGR G+++EA
Sbjct: 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-13
Identities = 57/258 (22%), Positives = 109/258 (42%), Gaps = 44/258 (17%)
Query: 697 GRVEELLKLYEEMSFRGC-KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCT 755
GR E L+L+E + +++ ++ + SI +++++ S GF P
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMI 815
++ K G L +A++LF+EM + N + +I G G+ A LF++M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 816 KGGIRPDLKSYSV-----------------------------------LVDCLCMVGRVD 840
+ G + +++ V L+D G ++
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900
DA F+ + + T+++N M+ G G EEAL L+ EM+ G+S D +T++ +I
Sbjct: 277 DARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 901 LNLGRAGMVEEARKLAGG 918
R ++E A++ G
Sbjct: 333 RIFSRLALLEHAKQAHAG 350
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 7e-13
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 155 PDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSD 204
PDVVTY LID C G++++A ++F +MK +P+ TY L+D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 9e-13
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 470 PNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVK 519
P+ VT+NTL+ CK +V+ A+K+ EM R P+V TY+ +I GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 6e-12
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 260 PNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGK 309
P++ TYNTLI G + +VEEAL++FN M+ G++P YTY + ID K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-09
Identities = 59/274 (21%), Positives = 111/274 (40%), Gaps = 48/274 (17%)
Query: 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS--------------------- 720
D+ ++N+L+ GY K+G +E L LY M + G +P+ +
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 721 -H-------------NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPC-TYGPLIDGLSK 765
H N +I+ VK + A +F C ++ +I G +
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF-----DRMPRRDCISWNAMISGYFE 265
Query: 766 SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKS 825
+G E +LF M + P+ + +I+ GD E+ ++K G D+
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325
Query: 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885
+ L+ +G +A F ++ D +S+ MI+G ++G ++AL + M+
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 886 KRGISPDLYTYNSLI---LNLGRAGMVEEARKLA 916
+ +SPD T S++ LG + + +LA
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 2e-09
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 783 GCKPNCVIYNILINGFGKTGDVETACELFKQM 814
G KP+ V YN LI+G + G V+ A EL +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.7 bits (128), Expect = 3e-09
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 152 GCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMK 184
G PDVVTY LID LC AGR+D+A E+ +M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 5e-09
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 330 PNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSK 379
P+VV+ N + + G++ EA +FN +K G P+ TY++++ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 5e-09
Identities = 21/34 (61%), Positives = 29/34 (85%)
Query: 859 ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD 892
++YN +I+GL ++GR+EEAL LF EMK+RGI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 8e-09
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 368 VTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDV 402
VTYN ++ K G+V+EA+ L EM E G EPDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 1e-08
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 821 PDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGR 870
PD+ +Y+ L+D C G+V++AL F E+K G+ + +Y+ +I+GL +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (123), Expect = 1e-08
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 467 GCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEM 498
G P+ VT+NTL+ LC+ VD A+++L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-08
Identities = 69/282 (24%), Positives = 112/282 (39%), Gaps = 26/282 (9%)
Query: 645 TSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLK 704
+S+ N + L E L L +M+ D Y L R+ E +
Sbjct: 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALF-------RLCEWKR 100
Query: 705 LYEEMSFRGCKPNTISH--------NIVISGLVKSNSIDKAMDLFYNLVSGG-FSPTPCT 755
EE S R C SH N ++S V+ + A +F + FS
Sbjct: 101 AVEEGS-RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS----- 154
Query: 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMI 815
+ L+ G +K+G +EA L+ ML G +P+ + ++ G D+ E+ ++
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
Query: 816 KGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIE 875
+ G D+ + L+ G V A F+ + D IS+N MI+G +G
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECL 270
Query: 876 EALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAG 917
E L LF M++ + PDL T S+I G R++ G
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-08
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 651 YNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK 695
YN LI G + E L LF MK G P++ TY++L+DG K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 859 ISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889
++YN +I+G ++G++EEAL LF EMK++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 5e-08
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 433 LAPTVVTYNTLLSGLGKEGQVQKAIELFEGM 463
L P VVTYNTL+ GL + G+V +A+EL + M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 5e-08
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 221 DGYAADVVTYTIFVDALCKVGNVEEAFSILDLMR 254
G DVVTY +D LC+ G V+EA +LD M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 7e-08
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 852 NGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885
GL D ++YN +I+GL R+GR++EA+ L DEM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 9e-08
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 505 PDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKW-LYPDHITLCTLLPGVVK 553
PDV+TYNT+I G K+ +V++A+ F++M+K + P+ T L+ G+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRPD 822
V YN LI+G K G VE A ELFK+M + GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-07
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC 788
TY LIDGL K+GR+EEA +LF+EM + G +P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 4e-07
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 85 PSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIR 130
P + TY+ L+ K+ ++ + L EM++ G++PNVYT++I I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT 718
TYN L+DG K+GRVEE L+L++EM RG +P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 6e-07
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 438 VTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNT 472
VTYNTL+ GL K G+V++A+ELF+ M + G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 9e-07
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 748 GFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEM 779
G P TY LIDGL ++GR++EA +L +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 1e-06
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 257 GILPNLHTYNTLICGLLRLDRVEEALEVFNNME 289
G+ P++ TYNTLI GL R RV+EA+E+ + ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 368 VTYNMMMKCYSKVGQVDEAVTLLSEMVENGC 398
VTYN ++ Y K G+++EA+ L EM E G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.4 bits (121), Expect = 1e-06
Identities = 49/235 (20%), Positives = 91/235 (38%), Gaps = 5/235 (2%)
Query: 684 STYNLLLDGYGKSGRVEELLKLYEEM-SFRGCKPNTISHNIVISGLVKSNSIDKAMDLFY 742
+ L G + E L+L EE ++ L+K +++A++L
Sbjct: 24 ALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLE 83
Query: 743 NLVSGGFSPTPC-TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT 801
+ P L L G+ EEA +L E+ L P+ + + +
Sbjct: 84 KALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143
Query: 802 GDVETACELFKQMIK--GGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTI 859
GD E A EL+++ ++ + ++ L L +GR ++AL E+ D D
Sbjct: 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203
Query: 860 SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARK 914
+ + + G+ EEAL +++ + + +L L L G EEA +
Sbjct: 204 ALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALE 257
|
Length = 291 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 2e-06
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 678 GCAPDISTYNLLLDGYGKSGRVEELLKLYEEMS 710
G PD+ TYN L+DG ++GRV+E ++L +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-06
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 228 VTYTIFVDALCKVGNVEEAFSILDLMRGEGILPN 261
VTY +D LCK G VEEA + M+ GI P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 361 SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMV 394
G PD VTYN ++ + G+VDEAV LL EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 501 RNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMR 534
+ PDV+TYNT+I GL + RV +A+ +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 789 VIYNILINGFGKTGDVETACELFKQMIKGGI 819
V YN LI+G+ K G +E A ELFK+M + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 438 VTYNTLLSGLGKEGQVQKAIELFEGMTDHGC 468
VTYN+L+SG K G++++A+ELF+ M + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 6e-06
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 396 NGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMK 429
G +PDV+ NTLID L +A RVDEA E+ M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 6e-06
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 263 HTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTA 297
TYNTLI GL + RVEEALE+F M+ G++P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 8e-06
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 158 VTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPD 191
VTY LID LC AGR+++A E+F +MK +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGC 784
TY LI G K+G+LEEA +LF+EM + G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRP 821
YN L+ K GD + A + ++M G++P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 123 YTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDV 157
T+ I L +AG+++EA + K M + G PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 228 VTYTIFVDALCKVGNVEEAFSILDLMRGEGI 258
VTY + CK G +EEA + M+ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 3e-05
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 117 GLRPNVYTFTICIRILGRAGKIDEAYRILKRM 148
GL+P+V T+ I L RAG++DEA +L M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 684 STYNLLLDGYGKSGRVEELLKLYEEMSFRGC 714
TYN L+ GY K+G++EE L+L++EM +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 4e-05
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 887 RGISPDLYTYNSLILNLGRAGMVEEARKL 915
+G+ PD+ TYN+LI L RAG V+EA +L
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVEL 29
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (106), Expect = 6e-05
Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 8/224 (3%)
Query: 209 EVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNL-HTYNT 267
E ++ + + + AL K+G +EEA +L+ +LPNL
Sbjct: 41 EALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLN 100
Query: 268 LICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRG 327
L L L + EEALE+ L P +L + + D +ALE +EK
Sbjct: 101 LGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE-- 158
Query: 328 IVPNVVSCNASLYSLAET----GRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQV 383
+ P + +L +L GR EA + D+ + Y K+G+
Sbjct: 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218
Query: 384 DEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCR 427
+EA+ + +E + + L L + R +EA E +
Sbjct: 219 EEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 6e-05
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 858 TISYNFMINGLGRSGRIEEALSLFDEMKKRGISP 891
+YN ++ L ++G + AL++ +EMK G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 6e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 368 VTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEP 400
TYN ++ +K G D A+ +L EM +G +P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP 786
TY L+ L+K+G + A + EEM G KP
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 10/30 (33%), Positives = 22/30 (73%)
Query: 712 RGCKPNTISHNIVISGLVKSNSIDKAMDLF 741
+G KP+ +++N +I GL ++ +D+A++L
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 818 GIRPDLKSYSVLVDCLCMVGRVDDALHYFEE 848
G++PD+ +Y+ L+D LC GRVD+A+ +E
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 158 VTYTVLIDALCTAGRLDQAKEIFLKMKAS 186
VTY LI C AG+L++A E+F +MK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 264 TYNTLICGLLRLDRVEEALEVFNNMEILGV 293
TYN+LI G + ++EEALE+F M+ GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 3e-04
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 87 LKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRP 120
L+TY+AL++A K + + +LEEM+ GL+P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 227 VVTYTIFVDALCKVGNVEEAFSILDLMRGEGILP 260
+ TY + AL K G+ + A ++L+ M+ G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (99), Expect = 5e-04
Identities = 48/276 (17%), Positives = 98/276 (35%), Gaps = 10/276 (3%)
Query: 275 LDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKM-KIRGIVPNVV 333
L + AL + + + + +ALE E+ ++
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 334 SCNASLYSLAETGRIGEAKTIFN-GLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSE 392
+L + GR+ EA + L+ + + +G+ +EA+ LL +
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 393 MVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLG---- 448
+ +PD+ + LY+ +EA E++ K ++L P + L LG
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELY--EKALELDPELNELAEALLALGALLE 178
Query: 449 KEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVL 508
G+ ++A+EL E + L K + + A++ YE +
Sbjct: 179 ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY-YEKALELDPDNAE 237
Query: 509 TYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITL 544
+ L++ R ++A+ + + L PD L
Sbjct: 238 ALYNLALLLLELGRYEEALEALEKALE-LDPDLYNL 272
|
Length = 291 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 6e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 157 VVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQP 190
+ TY L+ AL AG D A + +MKAS +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 8e-04
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 830 VDCLCMVGRVDDALHYFEELKLNG-LDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG 888
++ L GR +AL FE L+ +Y+ ++ I +++ ++ G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 889 ISPDLYTYNSLILNLGRAGMVEEARKL 915
PD Y N ++L + GM+ +AR+L
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRL 180
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 8e-04
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 406 NTLIDTLYKADRVDEAWEMFCRMKDMKLAPTV 437
NTLID L KA RV+EA E+F MK+ + P V
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 8e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 262 LHTYNTLICGLLRLDRVEEALEVFNNMEILGVQP 295
L TYN L+ L + + AL V M+ G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 51 NAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALM 94
+ +YN I + G EAL ++ + GIKP++ TYS L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 473 VTFNTLLHCLCKNEEVDLAMKMLYEM 498
VT+NTL+ LCK V+ A+++ EM
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM 26
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (96), Expect = 0.001
Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 9/247 (3%)
Query: 70 EALAVYKRVVSEGIKPS-LKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPN-VYTFTI 127
EAL + + + L +A K ++ + LLE+ L L PN
Sbjct: 41 EALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLN 100
Query: 128 CIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASS 187
+L GK +EA +L++ PD+ + + AL G ++A E++ K
Sbjct: 101 LGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELD 160
Query: 188 HQPDQ--VTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEE 245
+ ++ + L G E E + + D K+G EE
Sbjct: 161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220
Query: 246 AFSILDLMRGEGILPNL-HTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFI 304
A + + + P+ L LL L R EEALE + L + P Y L +
Sbjct: 221 A--LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE--KALELDPDLYNLGLAL 276
Query: 305 DYYGKSA 311
A
Sbjct: 277 LLLLAEA 283
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 298 YTYILFIDYYGKSADPGKALETFEKMKIRGIVPNV 332
TY ID K+ +ALE F++MK RGI P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 123 YTFTICIRILGRAGKIDEAYRILKRMDDEGC 153
T+ I +AGK++EA + K M ++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 473 VTFNTLLHCLCKNEEVDLAMKMLYEM 498
VT+N+L+ CK +++ A+++ EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.002
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 372 MMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEM 424
+M+CY +G E + L +E D+++ L L + + + A +
Sbjct: 254 KLMECYQALGDEAEGLEFLRRALEEYPGADLLLA--LAQLLEEQEGPEAAQAL 304
|
Length = 389 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADT 858
+Y+ L+D LC GRV++AL F+E+K G++ D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 967 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.98 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.97 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.91 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.78 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.75 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.74 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.73 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.73 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.73 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.72 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.71 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.67 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.66 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.63 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.61 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.61 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.6 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.53 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.52 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.44 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.43 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.38 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.37 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.37 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.36 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.33 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.32 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.28 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.19 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.07 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.06 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.04 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.99 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.98 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.96 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.93 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.91 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.89 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.88 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.87 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 98.87 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.87 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.87 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.86 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.86 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 98.85 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.84 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.83 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.82 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.81 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.76 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.75 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.73 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.72 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.66 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.64 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.57 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.56 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.55 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.47 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.45 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.42 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.4 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.36 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.34 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.33 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.28 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.26 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.26 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.25 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.25 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.24 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.21 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.2 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.16 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.15 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.13 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.13 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.12 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.11 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.11 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.06 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.05 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.04 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.02 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.99 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.98 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.98 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.98 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.93 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.93 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.9 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.88 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.83 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.79 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.77 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.76 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.74 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.73 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.65 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.65 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.59 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.59 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.59 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.58 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.57 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.57 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.53 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.53 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.48 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.44 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.43 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.35 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.35 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.28 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.28 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.27 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.25 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.25 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.21 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.21 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.21 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.16 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.15 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.13 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.12 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.09 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.08 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.06 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.03 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.02 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.0 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.99 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.93 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.87 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.87 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.87 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.83 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.83 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.73 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 96.62 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.61 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.59 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.56 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.55 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.53 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.53 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.52 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.5 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 96.5 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.45 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.43 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.4 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.24 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.21 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.21 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.21 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.16 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.09 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.06 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.06 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.0 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 95.97 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.97 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.96 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 95.89 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.85 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.85 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.85 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.83 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.82 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.8 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.72 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.65 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.65 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.62 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.55 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.53 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.47 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.39 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.27 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.27 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.18 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.15 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.06 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.97 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.95 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 94.8 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.8 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.78 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.46 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.43 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.41 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.38 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.23 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.17 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.83 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 93.8 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.75 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.66 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.63 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.53 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.41 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.36 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.31 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.3 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 93.29 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.17 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 93.16 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.15 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.08 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.07 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.04 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.0 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.98 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.71 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 92.7 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.58 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.19 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 92.17 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.76 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 91.47 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.39 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.38 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 91.18 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.0 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.89 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.81 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.67 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 90.61 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.54 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.52 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.26 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 90.17 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 88.91 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 88.83 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.48 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.38 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 88.32 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 87.97 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 87.82 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 87.27 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.27 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.01 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 86.97 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.55 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.38 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 86.21 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 85.61 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.29 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.27 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 84.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 84.18 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 84.15 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.93 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 83.52 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.24 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 83.09 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 82.97 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 82.82 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 82.38 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.27 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 81.72 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.94 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 80.54 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.48 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.46 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 80.31 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.11 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-72 Score=656.33 Aligned_cols=679 Identities=19% Similarity=0.287 Sum_probs=597.7
Q ss_pred CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 048794 48 FVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTI 127 (967)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (967)
..|+...++.++..+.+.|++++|..+|+.|...|++|+..+|..++.+|.+.+.++.+..++..+.+.+..++..+++.
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 048794 128 CIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGN 207 (967)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 207 (967)
++..|++.|+++.|.++|++|. +||..+|+.++.+|.+.|++++|.++|++|...|+.||..||+.++.+|...++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 9999999999999999999997 478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 048794 208 IEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNN 287 (967)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 287 (967)
+..+.+++..+.+.|+.|+..+++.++.+|++.|++++|..+|++|.. ||..+|+.++.+|++.|++++|+.+|.+
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999974 5889999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048794 288 MEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDS 367 (967)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 367 (967)
|...|+.||..||..++.+|.+.|+.+.+.+++..+.+.|..||..+|+.++.+|.+.|++++|.++|+.|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 999999999999999999999988888888888888888888888888888888888888888888888775 3567
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048794 368 VTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGL 447 (967)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 447 (967)
.+|+.++.+|++.|++++|.++|+.|.+.|+.||..+++.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 77888888888888888888888888777777888888888888888888888888887777777777777788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHH
Q 048794 448 GKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAI 527 (967)
Q Consensus 448 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 527 (967)
++.|++++|.++|++|.+ +|..+|+.++.+|+..|+.++|..+|++|.. ++.||..++..++.++.+.|..+.+.
T Consensus 435 ~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 877888888777777753 4566777777777777777777777777764 36677777777777777777777777
Q ss_pred HHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcC
Q 048794 528 WFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNG 607 (967)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (967)
+++..+.+
T Consensus 510 ~i~~~~~~------------------------------------------------------------------------ 517 (857)
T PLN03077 510 EIHAHVLR------------------------------------------------------------------------ 517 (857)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 66655543
Q ss_pred CCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH
Q 048794 608 ICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYN 687 (967)
Q Consensus 608 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 687 (967)
.+..++..+++.++.+|++.|+.++|..+|+.+ .||..+|+
T Consensus 518 ----------------------------------~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n 558 (857)
T PLN03077 518 ----------------------------------TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWN 558 (857)
T ss_pred ----------------------------------hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHH
Confidence 234556667788889999999999999998876 47999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCChhcHHHHHHHHHcC
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLV-SGGFSPTPCTYGPLIDGLSKS 766 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 766 (967)
.++.+|.+.|+.++|+++|++|...|+.||..++..++.+|.+.|..++|.++|+.|. ..+..|+..+|..++++|++.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999 558899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHY 845 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 845 (967)
|++++|.+++++|. +.||..+|..|+.+|...|+.+.|....+++.+ ..|+ ...|..|.++|+..|++++|.++
T Consensus 639 G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 639 GKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred CCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 99999999999984 579999999999999999999999999999988 5776 56777888999999999999999
Q ss_pred HHHHHHCCCCCCHH
Q 048794 846 FEELKLNGLDADTI 859 (967)
Q Consensus 846 ~~~~~~~~~~~~~~ 859 (967)
.+.|.+.|+++++.
T Consensus 714 r~~M~~~g~~k~~g 727 (857)
T PLN03077 714 RKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHcCCCCCCC
Confidence 99999988887664
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-71 Score=651.55 Aligned_cols=678 Identities=19% Similarity=0.276 Sum_probs=639.0
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 048794 14 NRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSAL 93 (967)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 93 (967)
+++...++.++.++.+.|++++|..+|+.|.+.|..|+..+|..++..+...+....+..++..+.+.+..++...++.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 048794 94 MVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRL 173 (967)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 173 (967)
+..|++.|+++.|..+|++|. +||+.+|+.++..|++.|++++|..+|++|...|+.||..+|+.++.+|...+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999996 4789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 174 DQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLM 253 (967)
Q Consensus 174 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (967)
..+.+++..|.+.|..|+..+++.|+.+|++.|+++.|..+|+.|. .+|..+|+.++.+|++.|++++|+++|.+|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 468899999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcc
Q 048794 254 RGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVV 333 (967)
Q Consensus 254 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 333 (967)
...|+.||..+|+.++.+|.+.|+.+.+.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|++|.. |+..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 6899
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 048794 334 SCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLY 413 (967)
Q Consensus 334 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 413 (967)
+|+.++.+|.+.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048794 414 KADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMK 493 (967)
Q Consensus 414 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (967)
+.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|..++.+|++.|+.+.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999975 6888999999999999999999999999986 589999999999999999999999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCC
Q 048794 494 MLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGT 573 (967)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 573 (967)
++..+...++.++..+++.++..|.++|++++|..+|+.+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---------------------------------------- 550 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---------------------------------------- 550 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----------------------------------------
Confidence 9999999999999999999999999999999998887654
Q ss_pred CcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 048794 574 RAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNY 653 (967)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 653 (967)
.++..+|+.
T Consensus 551 -----------------------------------------------------------------------~~d~~s~n~ 559 (857)
T PLN03077 551 -----------------------------------------------------------------------EKDVVSWNI 559 (857)
T ss_pred -----------------------------------------------------------------------CCChhhHHH
Confidence 234566888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcC
Q 048794 654 LIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMS-FRGCKPNTISHNIVISGLVKSN 732 (967)
Q Consensus 654 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 732 (967)
++.+|++.|+.++|+++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|++|. ..|+.|+..+|..++.++.+.|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 888889999999999999999999999999999999999999999999999999998 6788999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 048794 733 SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFK 812 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 812 (967)
++++|.+++++|. ..|+..+|..++.+|...|+.+.+....+++.+.. +.+...|..+.+.|+..|+|++|.++.+
T Consensus 640 ~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 640 KLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred CHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999998873 57888899999999999999999999998888853 2355678888889999999999999999
Q ss_pred HHHhCCCCCCH
Q 048794 813 QMIKGGIRPDL 823 (967)
Q Consensus 813 ~~~~~~~~p~~ 823 (967)
.|.+.|+.++.
T Consensus 716 ~M~~~g~~k~~ 726 (857)
T PLN03077 716 TMRENGLTVDP 726 (857)
T ss_pred HHHHcCCCCCC
Confidence 99998888764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-59 Score=535.28 Aligned_cols=514 Identities=19% Similarity=0.318 Sum_probs=468.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048794 16 DLSTYLTIFKALSLKGGLRRASFALEKMRAAGF-VLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALM 94 (967)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 94 (967)
+...|..++..+.+.|++++|+.+|+.|.+.|+ .++...++.++..+.+.|...+|..+++.|.. |+..+|+.++
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 788999999999999999999999999999986 46778888899999999999999999998853 9999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 048794 95 VAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLD 174 (967)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 174 (967)
.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 175 QAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVA--DGYAADVVTYTIFVDALCKVGNVEEAFSILDL 252 (967)
Q Consensus 175 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 252 (967)
+|.++|++|...|+.||..+|+.++.+|++.|++++|.+++.+|.. .|+.||..+|+.++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999976 57899999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCc
Q 048794 253 MRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNV 332 (967)
Q Consensus 253 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 332 (967)
|.+.|+.|+..+|+.++.+|++.|++++|..+|++|...|+.||..+|..++.+|++.|+.++|.++++.|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048794 333 VSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTL 412 (967)
Q Consensus 333 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 412 (967)
.+|+.++.+|.+.|++++|.++|+.|...|+.|+..+|+.++.+|++.|++++|.++|+.|...|+.||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhCCCC
Q 048794 413 YKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGK----E-------------------GQVQKAIELFEGMTDHGCF 469 (967)
Q Consensus 413 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~ 469 (967)
++.|+++.|.+++..|.+.|+.||..+|++++..|.+ . +..+.|..+|++|.+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999876542 0 1234566666677766666
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHh
Q 048794 470 PNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRK 535 (967)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (967)
||..+|..++.+++..+..+.+..+++.+...+..|+..+|+.++.++.+. .++|..+|++|.+
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 776677666666666666666666666666555556666666666665321 2456666666654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=526.66 Aligned_cols=431 Identities=22% Similarity=0.381 Sum_probs=405.9
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048794 83 IKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGL-RPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYT 161 (967)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 161 (967)
..++...|..++..+++.|++++|.++|++|...++ +++...+..++..|.+.|.+++|..+|+.|.. |+..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 466777888999999999999999999999998885 56777788899999999999999999998874 8999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC
Q 048794 162 VLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVG 241 (967)
Q Consensus 162 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 241 (967)
.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|...|+.||..+|+.++.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhhcCChhhHHHH
Q 048794 242 NVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEI--LGVQPTAYTYILFIDYYGKSADPGKALET 319 (967)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 319 (967)
++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|..++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 57899999999999999999999999999
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 048794 320 FEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCE 399 (967)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 399 (967)
|+.|.+.++.|+..+|+.++.+|.+.|++++|..+|+.|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 048794 400 PDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLL 479 (967)
Q Consensus 400 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (967)
||..+|+.++.+|++.|++++|.++|++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+|..++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 048794 480 HCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGL 517 (967)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 517 (967)
.+|++.|+++.|.+++..|.+.++.|+..+++.++..+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999887544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-53 Score=514.56 Aligned_cols=873 Identities=12% Similarity=0.041 Sum_probs=748.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048794 16 DLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMV 95 (967)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 95 (967)
+...+....+.+...|++++|...|++..+..+. ++..+..+..++...|++++|+..++++.+.+. ++......+..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 98 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN-DAEARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLLAR 98 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChhhhHHHHHH
Confidence 5666778889999999999999999999998755 888999999999999999999999999998764 45566677788
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 048794 96 AAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQ 175 (967)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 175 (967)
.+...|++++|...+.+......+.....+..+...+...|++++|...|+++.+.. +.+...+..++..+...|++++
T Consensus 99 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~ 177 (899)
T TIGR02917 99 AYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDE 177 (899)
T ss_pred HHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHH
Confidence 899999999999999876533434566778888899999999999999999998764 4567788899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048794 176 AKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRG 255 (967)
Q Consensus 176 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 255 (967)
|.++++++... .+++...+..+...+...|++++|...++..+... +.+...+..++..+...|++++|...++.+.+
T Consensus 178 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 255 (899)
T TIGR02917 178 ARALIDEVLTA-DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLK 255 (899)
T ss_pred HHHHHHHHHHh-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999875 34567788888889999999999999999998775 45778888999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccH
Q 048794 256 EGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSC 335 (967)
Q Consensus 256 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 335 (967)
.... +...+......+...|++++|...++.+...+. .....+..+...+...|+++.|...++++..... .+...+
T Consensus 256 ~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 332 (899)
T TIGR02917 256 KAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQAR 332 (899)
T ss_pred hCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 6543 444444455566788999999999999887652 2334555667778899999999999999887632 245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048794 336 NASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKA 415 (967)
Q Consensus 336 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 415 (967)
..+...+...|++++|...+..+.... +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 410 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQ 410 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhC
Confidence 777888999999999999999998764 5567788889999999999999999999998764 34566778888899999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048794 416 DRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKML 495 (967)
Q Consensus 416 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (967)
|++++|...++.+.+..+. .......++..+.+.|++++|..+++.+... .+++..++..+..++...|++++|.+.+
T Consensus 411 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 411 GDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999876543 3455666788899999999999999999875 4667888999999999999999999999
Q ss_pred HhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCc
Q 048794 496 YEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRA 575 (967)
Q Consensus 496 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 575 (967)
+++.+.+ +.+...+..++..+...|++++|...|+++.+..|.+..++..++..+...|++++|...+++++...
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 563 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---- 563 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 9998875 34667778888999999999999999999999899999999999999999999999999999877654
Q ss_pred chhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 048794 576 ERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLI 655 (967)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 655 (967)
|.+......++..+...|++++|...++++... .+.+...+..++
T Consensus 564 ---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 608 (899)
T TIGR02917 564 ---------------------------------PQEIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLG 608 (899)
T ss_pred ---------------------------------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHH
Confidence 223344567889999999999999999998654 356778899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 048794 656 HGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSID 735 (967)
Q Consensus 656 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 735 (967)
..+...|++++|+..|+++.+.. +.+...+..++..+...|++++|...|+++.... +.+..++..++..+...|+++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998864 3466778889999999999999999999999874 456778899999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048794 736 KAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMI 815 (967)
Q Consensus 736 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 815 (967)
+|..+++.+.... +.+...+..++..+...|++++|++.|+++...+ |+..++..++.++...|++++|++.+++++
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998874 4566678889999999999999999999999864 555778889999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 048794 816 KGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYT 895 (967)
Q Consensus 816 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 895 (967)
+. .+.+..+++.++.+|...|++++|..+|+++++.. ++++.++..+++++...|+ .+|+..++++.+. .+.++..
T Consensus 764 ~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~ 839 (899)
T TIGR02917 764 KT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAI 839 (899)
T ss_pred Hh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHH
Confidence 85 23457889999999999999999999999999864 5678889999999999999 8899999999974 4445688
Q ss_pred HHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchh
Q 048794 896 YNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKH 949 (967)
Q Consensus 896 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~ 949 (967)
+..++.++...|++++|.++++++++.+|+++.. .+++.+|...|++++|..-+
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8899999999999999999999999999999988 69999999999999988733
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=485.08 Aligned_cols=848 Identities=12% Similarity=0.030 Sum_probs=723.7
Q ss_pred CCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHH
Q 048794 13 INR-DLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYS 91 (967)
Q Consensus 13 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 91 (967)
+.| +...+..+..++.+.|++++|...++++...++. +...+..+..++...|++++|...+........+.+...+.
T Consensus 51 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 129 (899)
T TIGR02917 51 KDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLA 129 (899)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHH
Confidence 344 7788889999999999999999999999998865 56667788899999999999999998775434445556777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048794 92 ALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAG 171 (967)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 171 (967)
.+...+...|+++.|...|+++.... +.+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...|
T Consensus 130 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 207 (899)
T TIGR02917 130 LRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLG 207 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcC
Confidence 78888899999999999999998765 4567788889999999999999999999998764 567888999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 172 RLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILD 251 (967)
Q Consensus 172 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 251 (967)
++++|.+.|++..... +.+..++..+...+...|++++|...++.+.+... .+..........+...|++++|...|+
T Consensus 208 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 285 (899)
T TIGR02917 208 NIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAP-NSPLAHYLKALVDFQKKNYEDARETLQ 285 (899)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999998763 45667788888899999999999999999987643 344445555666778999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC
Q 048794 252 LMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPN 331 (967)
Q Consensus 252 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 331 (967)
.+.+.+.. ....+..+...+...|++++|...++.+.... +.+......+...+...|+++.|...+..+..... .+
T Consensus 286 ~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~ 362 (899)
T TIGR02917 286 DALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DD 362 (899)
T ss_pred HHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CC
Confidence 99886533 34445566677888999999999999988764 44566777888899999999999999999987642 35
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048794 332 VVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDT 411 (967)
Q Consensus 332 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 411 (967)
...+..+...+...|++++|...|+.+.+.. +.+...+..+..++...|++++|...++.+.+.. +........++..
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 440 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILS 440 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHH
Confidence 6678888899999999999999999998764 4566778888889999999999999999998764 2234456677888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048794 412 LYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLA 491 (967)
Q Consensus 412 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 491 (967)
+.+.|++++|..+++.+.... +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998754 3477889999999999999999999999998863 45677788889999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhc
Q 048794 492 MKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQI 571 (967)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 571 (967)
.+.++.+...+ +.+...+..++..+...|++++|...++++.+..|.+...+..++..+...|++++|+..+++++...
T Consensus 519 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 519 IQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999998875 34677888899999999999999999999999889999999999999999999999999999876543
Q ss_pred CCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHH
Q 048794 572 GTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMY 651 (967)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 651 (967)
+.+...+..++..+...|++++|...|.+++... +.+...+
T Consensus 598 -------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 638 (899)
T TIGR02917 598 -------------------------------------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALAL 638 (899)
T ss_pred -------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHH
Confidence 3334456678899999999999999999987653 4567788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 048794 652 NYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS 731 (967)
Q Consensus 652 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 731 (967)
..++..+...|++++|...|+++.+.. +.+..++..++..+...|++++|..+++.+.... +.+...+..++.++...
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 716 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQ 716 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHC
Confidence 899999999999999999999999864 3467788999999999999999999999998875 55677788889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELF 811 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 811 (967)
|++++|...|+++....+ +..++..++.++.+.|++++|.+.++++.+.. +.+..++..++.+|...|++++|+..|
T Consensus 717 g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999999998743 33677788999999999999999999999864 447789999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048794 812 KQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP 891 (967)
Q Consensus 812 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 891 (967)
+++++.+ +++..++..++.++...|+ .+|+.+++++++.. +.++..+..++.++...|++++|.+.++++++. .+.
T Consensus 794 ~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~ 869 (899)
T TIGR02917 794 RTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI-APE 869 (899)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC
Confidence 9999852 3457889999999999999 88999999999853 446677888999999999999999999999975 344
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 892 DLYTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 892 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
+..++..++.++.+.|++++|++.++++++
T Consensus 870 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 870 AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 789999999999999999999999998763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=487.64 Aligned_cols=470 Identities=19% Similarity=0.333 Sum_probs=448.8
Q ss_pred ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 048794 51 NAYSYNGFIHFILQSGFCREALAVYKRVVSEG-IKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICI 129 (967)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (967)
+...|+.++..+.+.|++++|+.+|++|...+ ..|+..+|+.++.+|.+.++++.+..++..|.+.|+.||..+++.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 55689999999999999999999999998764 68999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 048794 130 RILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIE 209 (967)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 209 (967)
..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|...|+.|+..+|..++.+|...|+.+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999974 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 048794 210 VVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNME 289 (967)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 289 (967)
.+.+++..+.+.|+.+|..+++.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|..+|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999974 599999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048794 290 ILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVT 369 (967)
Q Consensus 290 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 369 (967)
..|+.||..||..++.+|++.|+++.|.+++..|.+.|+.|+..+++.++.+|.+.|++++|.++|+.|. .+|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 468899
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 048794 370 YNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKD-MKLAPTVVTYNTLLSGLG 448 (967)
Q Consensus 370 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 448 (967)
|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|++++.+|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999975 689999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHH
Q 048794 449 KEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIW 528 (967)
Q Consensus 449 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 528 (967)
+.|++++|.+++++| +..|+..+|..++.+|...|+++.|..+++.+.+.+ +.+..+|..++..|.+.|++++|.+
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999998876 467999999999999999999999999999997765 2356789999999999999999999
Q ss_pred HHHHHHhh
Q 048794 529 FFHQMRKW 536 (967)
Q Consensus 529 ~~~~~~~~ 536 (967)
+++.|.+.
T Consensus 550 v~~~m~~~ 557 (697)
T PLN03081 550 VVETLKRK 557 (697)
T ss_pred HHHHHHHc
Confidence 99999874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=477.96 Aligned_cols=474 Identities=21% Similarity=0.287 Sum_probs=451.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048794 16 DLSTYLTIFKALSLKGGLRRASFALEKMRAAG-FVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALM 94 (967)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 94 (967)
+...|+.++..+.+.|++++|+.+|+.|...+ ..|+..+|+.++.++.+.++++.|..++..+.+.|+.|+..+++.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 45589999999999999999999999999865 57899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 048794 95 VAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLD 174 (967)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 174 (967)
..|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|..+|++|.+.|+.|+..+|+.++.+|.+.|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999996 47899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 175 QAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMR 254 (967)
Q Consensus 175 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 254 (967)
.+.+++..+.+.|..||..+++.|+.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999985 4589999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCccc
Q 048794 255 GEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVS 334 (967)
Q Consensus 255 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 334 (967)
..|+.||..||+.++.+|++.|.+++|.+++..|.+.|+.|+..+++.++.+|++.|+++.|.++|++|.+ ||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999974 69999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCChhhHHHHHHHHH
Q 048794 335 CNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVE-NGCEPDVIVMNTLIDTLY 413 (967)
Q Consensus 335 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 413 (967)
|+.++.+|.+.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.++.
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 589999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048794 414 KADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMK 493 (967)
Q Consensus 414 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (967)
+.|++++|.++++++ +..|+..+|+.++.+|...|+++.|..+++++.+.+ +.+..+|..++..|++.|++++|.+
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999998765 467999999999999999999999999999997643 3356789999999999999999999
Q ss_pred HHHhhccCCCCC
Q 048794 494 MLYEMTPRNCWP 505 (967)
Q Consensus 494 ~~~~~~~~~~~~ 505 (967)
+++.|.+.|+..
T Consensus 550 v~~~m~~~g~~k 561 (697)
T PLN03081 550 VVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcc
Confidence 999999998653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-29 Score=304.47 Aligned_cols=443 Identities=11% Similarity=0.028 Sum_probs=265.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHHH------------H
Q 048794 409 IDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFP-NTVT------------F 475 (967)
Q Consensus 409 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~------------~ 475 (967)
...+...|++++|+..|++.....+. +...+..+...+.+.|++++|+..|++..+..... .... .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 44455666666666666666654322 55566666666666666666666666665542111 1111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcC
Q 048794 476 NTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDG 555 (967)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 555 (967)
......+...|++++|...+++++..+ +.+...+..++..+...|++++|+..|+++.+..|.+...+..++..+. .+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hc
Confidence 122345667788888888888887775 2355666677777888888888888888888777777777777777664 34
Q ss_pred ChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHH
Q 048794 556 QIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLF 635 (967)
Q Consensus 556 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 635 (967)
+.++|+..++........ .+.. ..
T Consensus 433 ~~~~A~~~l~~l~~~~~~-----~~~~---------------------------------------------------~~ 456 (1157)
T PRK11447 433 SPEKALAFIASLSASQRR-----SIDD---------------------------------------------------IE 456 (1157)
T ss_pred CHHHHHHHHHhCCHHHHH-----HHHH---------------------------------------------------HH
Confidence 667777666542211000 0000 00
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 048794 636 VKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCK 715 (967)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 715 (967)
. ......+..++..+...|++++|+..|++.++..+ .+...+..++..|.+.|++++|+..|+++.... +
T Consensus 457 ~--------~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P 526 (1157)
T PRK11447 457 R--------SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-P 526 (1157)
T ss_pred H--------HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 0 00001223334444455555555555555554421 133344445555555555555555555554432 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---------hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 048794 716 PNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP---------CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP 786 (967)
Q Consensus 716 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 786 (967)
.+...+..+...+...++.++|+..++++......+.. ..+...+..+...|++++|+.+++. .+.
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 22333333333344455555555555443221111110 1223456677888888888888772 244
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMI 865 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 865 (967)
+...+..++..+.+.|++++|+..|+++++. .|+ ..++..++.+|...|++++|++.++++.+.. +.+...+..++
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la 678 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVA 678 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHH
Confidence 5567777888888888888888888888873 555 6788888888888888888888888877642 33455667788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--CC---CHHhHHHHHHHHHhcCCHHHHHHhhcCCCc---CCCCccc
Q 048794 866 NGLGRSGRIEEALSLFDEMKKRGI--SP---DLYTYNSLILNLGRAGMVEEARKLAGGNCF---VQPSEFV 928 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~ 928 (967)
.++...|++++|.+++++++...- +| +..++..++.++...|++++|+..+++++. +.|..|.
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQ 749 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence 888888888888888888875311 11 124556678888888888888888888874 4455554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-28 Score=296.99 Aligned_cols=660 Identities=14% Similarity=0.071 Sum_probs=376.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------------
Q 048794 94 MVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVV--------------- 158 (967)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------- 158 (967)
++.....++.+.|.+.+.++.... +.+..++..++..+.+.|+.++|.+.++++.+.. |.+..
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCch
Confidence 344455666666666666665543 3455556666666666666666666666665543 22222
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 048794 159 -TYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQV-TYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDA 236 (967)
Q Consensus 159 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (967)
....+...+...|++++|.+.|+.+...+ +|+.. ....+.......|+.++|...++.+++.. +.+...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 22334446677888888888888877543 22321 11112222234578888888888887764 3366677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhH
Q 048794 237 LCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKA 316 (967)
Q Consensus 237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 316 (967)
+...|+.++|+..++++...... +...-..........+....+...+.. .+..+........+
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~---------------~l~~~p~~~~~~~A 254 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQK---------------YLQVFSDGDSVAAA 254 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHH---------------HHHHCCCchHHHHH
Confidence 88888888888888887654210 010001111111111112222222222 22222222233445
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048794 317 LETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVEN 396 (967)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 396 (967)
...+.........|... .......+...|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..|+++.+.
T Consensus 255 ~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 255 RSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555544332222221 1233455677888888888888887753 446777778888888888888888888888765
Q ss_pred CCCCC-hhhH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 397 GCEPD-VIVM------------NTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGM 463 (967)
Q Consensus 397 ~~~~~-~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 463 (967)
..... ...+ ......+.+.|++++|...|+++....+ .+...+..+...+...|++++|++.|+++
T Consensus 333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 32111 1111 1223455677788888888888776543 25566666777777788888888888887
Q ss_pred HhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCC--------CCHHHHHHHHHHHhhcCcHhHHHHHHHHHHh
Q 048794 464 TDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCW--------PDVLTYNTIIYGLVKEQRVKDAIWFFHQMRK 535 (967)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (967)
.+.. +.+...+..+...+. .++.++|...++.+...... .....+..++..+...|++++|+..|+++.+
T Consensus 412 L~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 412 LRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7652 334555666666553 45677777777665432100 0011233344555566666666666666666
Q ss_pred hcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcch
Q 048794 536 WLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVV 615 (967)
Q Consensus 536 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (967)
..|.++..+..++..|...|++++|+..+++++...
T Consensus 490 ~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-------------------------------------------- 525 (1157)
T PRK11447 490 LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-------------------------------------------- 525 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------------------------
Confidence 666666666666666666666666666655544322
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK 695 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 695 (967)
+.++..+..++..+...++.++|+..++.+......++...+
T Consensus 526 -----------------------------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l--------- 567 (1157)
T PRK11447 526 -----------------------------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQEL--------- 567 (1157)
T ss_pred -----------------------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHH---------
Confidence 222333333333444555555665555544321111110000
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHH
Q 048794 696 SGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKL 775 (967)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 775 (967)
...+. ..........+...|+.++|..+++. .+.+...+..++..+.+.|++++|+..
T Consensus 568 ----------~~~l~-------~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 568 ----------AQRLQ-------SDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred ----------HHHHh-------hhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 00000 00122344556666777777766651 234444566677777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048794 776 FEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGL 854 (967)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 854 (967)
|+++++.. +.+...+..++.+|...|++++|++.++++.+ ..|+ ......++.++...|++++|.+++++++....
T Consensus 626 y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 626 YQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 77777653 22556777777777777777777777777665 2444 45566677777777777777777777765321
Q ss_pred --CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 855 --DA---DTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 855 --~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
+| +...+..++.++...|++++|+..|++++
T Consensus 703 ~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 703 SQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 12344556777777777777777777775
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-27 Score=273.15 Aligned_cols=686 Identities=11% Similarity=0.007 Sum_probs=407.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 048794 206 GNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVF 285 (967)
Q Consensus 206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 285 (967)
|++++|...|++.++..+. +..++..+...|.+.|++++|+..+++..+.. |+-..+..++..+ +++++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHH
Confidence 5555555555555544322 34455555555555555555555555555542 2222222222111 5555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHH--------HhhcCChhhHHHHHHHHHHcCCCCCcccHHHH-HHHHHhcCCHHHHHHHHH
Q 048794 286 NNMEILGVQPTAYTYILFIDY--------YGKSADPGKALETFEKMKIRGIVPNVVSCNAS-LYSLAETGRIGEAKTIFN 356 (967)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~ 356 (967)
+++.... +.+...+..+... |.+. +.+...++ .......|...+.... ...|.+.|++++|+.++.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 5555442 2222333333332 3333 22333332 2222122223333333 556666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-
Q 048794 357 GLKNSGFAPDSVTYNMMMKCYSK-VGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLA- 434 (967)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 434 (967)
.+.+.+ +.+......+..+|.. .++ +.+..++.. ....+......++..+.+.|+.++|...++++......
T Consensus 207 ~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 666654 3334444555555555 244 555555332 12245556666666666777777777666665433211
Q ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHH
Q 048794 435 PTVVTYNTLLSGLGKEGQVQ-KAIELFEGMTDHGCFPNT-VTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNT 512 (967)
Q Consensus 435 ~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 512 (967)
|...++... +.+.+... .|..-+.+ . ..++. .....++..+.+.++++-+.++. ... |.......
T Consensus 281 ~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~ 347 (987)
T PRK09782 281 AQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLL-ATL-----PANEMLEE 347 (987)
T ss_pred CccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHh-cCC-----CcchHHHH
Confidence 333333322 22222221 11111111 0 01111 11122345555666666444442 111 11111111
Q ss_pred HHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhh-cCCCcchhhHhhhhhhhcccC
Q 048794 513 IIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQ-IGTRAERQFWQDLVGGILTVA 591 (967)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 591 (967)
-.......+...++...+..+.+..|.+......+.-...+.|+..+|.++++.+... .....+......++...-..+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 1111223355566666666666656666666666666667777777777777666552 111111111112222121221
Q ss_pred CCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCC-CC--CHHHHHHHHHHHHhcCChHHHH
Q 048794 592 GPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGV-TS--TLEMYNYLIHGLLEVHATEMGL 668 (967)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~A~ 668 (967)
........... +.+.+.... -.-.|+..++...+..+....+. +. +...+..++..+.. ++.++|+
T Consensus 428 ~~~~~~~~~~l----~~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 428 YLATPAKVAIL----SKPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred cccchHHHHHh----ccccccchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 11111100000 000000000 11133443434344333333332 44 67788888888776 8899999
Q ss_pred HHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048794 669 DLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGG 748 (967)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 748 (967)
..+.+.... .|+......++..+...|++++|+..|+++... +|+...+..++.++...|++++|...+++++...
T Consensus 497 ~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 497 YAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 988888876 466555555566667899999999999998765 4555567778888999999999999999999874
Q ss_pred CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 048794 749 FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYS 827 (967)
Q Consensus 749 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~ 827 (967)
+.....+..++......|++++|+..|+++++. .|+...|..++.++.+.|++++|+..|++++. ..|+ ...+.
T Consensus 573 -P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~ 647 (987)
T PRK09782 573 -LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQA 647 (987)
T ss_pred -CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 333334444455556679999999999999986 56778999999999999999999999999999 4676 67889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhc
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRA 906 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 906 (967)
.++.++...|++++|+..++++++.. +.++..+..++.++...|++++|+..++++++ ..|+. .+....++...+.
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHH
Confidence 99999999999999999999999853 44778899999999999999999999999996 55665 8888999999999
Q ss_pred CCHHHHHHhhcCCCcCCCCccccccceeeeccCCCccc
Q 048794 907 GMVEEARKLAGGNCFVQPSEFVSSELQVIYAENPRATS 944 (967)
Q Consensus 907 g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~~~~g~~~~ 944 (967)
.++++|.+-+++....+|....-.-.+.++...+++-+
T Consensus 725 ~~~~~a~~~~~r~~~~~~~~~a~~~~g~~~~~~~~~~~ 762 (987)
T PRK09782 725 FNFRRLHEEVGRRWTFSFDSSIGLRSGAMSTANNNVGG 762 (987)
T ss_pred HHHHHHHHHHHHHhhcCccchhccccchHhhhcccccC
Confidence 99999999999999999999932688888888888744
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-27 Score=271.87 Aligned_cols=641 Identities=13% Similarity=0.025 Sum_probs=450.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhH
Q 048794 237 LCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKA 316 (967)
Q Consensus 237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 316 (967)
+...|++++|+..|+...+..+. +..++..+...+...|+.++|...+++..+.. |+...+..++..+ ++.++|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhH
Confidence 34559999999999999988655 58888999999999999999999999998874 4444444433222 888999
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCChhHHH
Q 048794 317 LETFEKMKIRGIVPNVVSCNASLYS--------LAETGRIGEAKTIFNGLKNSGFAPDSVTYNMM-MKCYSKVGQVDEAV 387 (967)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~ 387 (967)
..+++++...... +..++..+... |.+. ++|...++ .......|+..+.... .+.|...++++.|+
T Consensus 128 ~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 128 VTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999887322 23334444333 5555 45555554 3333334455555544 88999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 388 TLLSEMVENGCEPDVIVMNTLIDTLYK-ADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDH 466 (967)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 466 (967)
.++..+.+.+ +.+......+..+|.. .++ +.+..+++. .+..+...+..++..+.+.|+.++|...++++...
T Consensus 203 ~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 9999999986 3445556677777777 466 777777553 23357888899999999999999999999998764
Q ss_pred CCC-CcHHHHHHHHHHHHhcCCHH-HHHHHHHhhccCCCCCC-HHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhH
Q 048794 467 GCF-PNTVTFNTLLHCLCKNEEVD-LAMKMLYEMTPRNCWPD-VLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHIT 543 (967)
Q Consensus 467 ~~~-~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 543 (967)
... |+..++..++. +.+... .|..-+.. .. .++ ......++..+.+.++++.+..+ ....|.++.
T Consensus 277 ~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~- 344 (987)
T PRK09782 277 FTTDAQEKSWLYLLS---KYSANPVQALANYTV--QF--ADNRQYVVGATLPVLLKEGQYDAAQKL----LATLPANEM- 344 (987)
T ss_pred ccCCCccHHHHHHHH---hccCchhhhccchhh--hh--HHHHHHHHHHHHHHHHhccHHHHHHHH----hcCCCcchH-
Confidence 322 55555544432 333322 22222222 11 111 12223346678888888866544 333344442
Q ss_pred HHhHHHHH--HhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHH
Q 048794 544 LCTLLPGV--VKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKL 621 (967)
Q Consensus 544 ~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 621 (967)
. ..+.+ ...+...++.......... .|.+......+...
T Consensus 345 ~--~~r~~~~~~~~~~~~~~~~~~~~y~~-------------------------------------~~~~~~~l~q~~~~ 385 (987)
T PRK09782 345 L--EERYAVSVATRNKAEALRLARLLYQQ-------------------------------------EPANLTRLDQLTWQ 385 (987)
T ss_pred H--HHHHhhccccCchhHHHHHHHHHHhc-------------------------------------CCCCHHHHHHHHHH
Confidence 2 22222 2345556665555544333 24455555666677
Q ss_pred HHhhccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCC---hHHHH-------------------------HHHH
Q 048794 622 FCRQKKALAAKDLFVKFTENLG-VTSTLEMYNYLIHGLLEVHA---TEMGL-------------------------DLFT 672 (967)
Q Consensus 622 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---~~~A~-------------------------~~~~ 672 (967)
..++|+..+|..+|+......+ ...+......++..|.+.+. ..+++ ..+.
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 7778888888888877654211 22233344466666666554 22222 2222
Q ss_pred HHHHcCCCc--CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 673 TMKNAGCAP--DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS 750 (967)
Q Consensus 673 ~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 750 (967)
..+... ++ +...+..++.++.. ++.++|+..|.+.... .|+......++..+...|++++|...|+++... +
T Consensus 466 ~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 466 RLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred HhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 222221 23 56678888888877 8999999989888876 455554445555667899999999999998765 3
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLV 830 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 830 (967)
+....+..++.++.+.|++++|...++++++.. +.+...+..++......|++++|+..|+++++ ..|+...+..++
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA 616 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARA 616 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 334456777889999999999999999999864 22333444455555567999999999999998 578888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 910 (967)
.++.+.|++++|+..+++++..+ +.+...+..++.++...|++++|+..++++++. .|.+..++..++.++...|+++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999864 446778899999999999999999999999974 4445699999999999999999
Q ss_pred HHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchhhhhhccc
Q 048794 911 EARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCEYLASS 956 (967)
Q Consensus 911 ~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~~~ 956 (967)
+|+..++++++++|++... ...+++.....++..+...+.+...-.
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999888 689999999998888777666654433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-27 Score=246.83 Aligned_cols=578 Identities=15% Similarity=0.088 Sum_probs=386.5
Q ss_pred hhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 048794 313 PGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNS--GFAPDSVTYNMMMKCYSKVGQVDEAVTLL 390 (967)
Q Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 390 (967)
.+.|...|..+.+.. ++++..+---.......+++..|+.+|..+... ..+||.. ..+..++.+.++.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 356666666665542 122222222223344566777777777775432 2233432 22334556777777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048794 391 SEMVENGCEPDVIVMNTLIDTLYKA---DRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHG 467 (967)
Q Consensus 391 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 467 (967)
..+.+.+ +-++.++-.|...-... ..+..+..++...-..+. -++...+.|...|...|+++.+..+...+....
T Consensus 223 ~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 7777653 12222232222222222 234455555555544332 366677777777777777777777777666532
Q ss_pred C--CCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHH
Q 048794 468 C--FPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLC 545 (967)
Q Consensus 468 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 545 (967)
. ..-...|..+.++|-..|+++.|...|......+.......+..++..+...|+.+.+...|+++.+..|.+..+..
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 1 11234466677777777888888777777776642222334445667777778888888778777777777777777
Q ss_pred hHHHHHHhcC----ChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHH
Q 048794 546 TLLPGVVKDG----QIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKL 621 (967)
Q Consensus 546 ~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 621 (967)
.|+..|...+ ..+.|..++.+.+... |.+...+..++.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-------------------------------------~~d~~a~l~laql 423 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-------------------------------------PVDSEAWLELAQL 423 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-------------------------------------cccHHHHHHHHHH
Confidence 7777776654 4455555665555433 2233334444555
Q ss_pred HHhhccHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCc------CHhhHHHH
Q 048794 622 FCRQKKALAAKDLFVKFT---ENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNA---GCAP------DISTYNLL 689 (967)
Q Consensus 622 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~------~~~~~~~l 689 (967)
+...+-+.. ..+|.... ...+....+...+.++..+...|++++|...|...... ...+ +...-+.+
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 544433333 55554432 23344577788888888888999999998888887765 1122 22345667
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC
Q 048794 690 LDGYGKSGRVEELLKLYEEMSFRGCKPNTI-SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR 768 (967)
Q Consensus 690 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 768 (967)
+.+....++++.|-+.|..+.+. .|+.+ .+..++-.....+...+|...+..++..+ ..++.++..++..|.+...
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 77888888999999999999887 45544 34444433345578889999999988863 4455677778888888888
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh------------ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 048794 769 LEEAKKLFEEMLDY-GCKPNCVIYNILINGFG------------KTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC 834 (967)
Q Consensus 769 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 834 (967)
+.-|.+-|+.+.+. ...+|+.+...|++.|. ..+.+++|+++|.++++ ..|. ..+-+.++-+++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhh
Confidence 88888877777653 12357677777777653 23457899999999998 4554 678899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR-GISPDLYTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 913 (967)
..|++.+|..+|.++.+.. .....+|.+++++|..+|+|..|+++|+.+++. +-..+..++..|+.++++.|.+.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999998753 345667899999999999999999999999843 33345689999999999999999999
Q ss_pred HhhcCCCcCCCCcccc-ccceeeeccC
Q 048794 914 KLAGGNCFVQPSEFVS-SELQVIYAEN 939 (967)
Q Consensus 914 ~~~~~~l~~~p~~~~~-~~l~~~~~~~ 939 (967)
..+.+++.+.|.|+.. .++|.+..+.
T Consensus 737 ~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 737 EALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 9999999999999998 6777666443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=250.98 Aligned_cols=451 Identities=15% Similarity=0.128 Sum_probs=357.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcC
Q 048794 442 TLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQ 521 (967)
Q Consensus 442 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 521 (967)
.+..-..+.|++.+|++--...-..+ +.+......+-..+....+++.....-...+..+ +.-..+|..++..+...|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 34444556777777776544443332 2222222233334555555555554444444443 224567777778788888
Q ss_pred cHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHH
Q 048794 522 RVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAE 601 (967)
Q Consensus 522 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (967)
++++|+..|+.+.+..|.....|..++.++...|+.+.|...+..++..++..
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l--------------------------- 183 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL--------------------------- 183 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch---------------------------
Confidence 88888888888888888888888888888888888888888877777654321
Q ss_pred HHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 048794 602 KLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAP 681 (967)
Q Consensus 602 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 681 (967)
.-....++..+...|+.++|...|.+.+... +....+|..|+..+..+|+...|+..|++.++. .|
T Consensus 184 ----------~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP 249 (966)
T KOG4626|consen 184 ----------YCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DP 249 (966)
T ss_pred ----------hhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CC
Confidence 1223345667777888888888888876653 455778999999999999999999999999986 45
Q ss_pred C-HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHH
Q 048794 682 D-ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLI 760 (967)
Q Consensus 682 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 760 (967)
+ ..+|..|+..|...+.+|+|+..|.++.... +....++..+...|..+|+.+-|++.|+++++.. +.-+.+|+.++
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~Nla 327 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLA 327 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHH
Confidence 4 5689999999999999999999999998763 3455677888888999999999999999999974 44567899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRV 839 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 839 (967)
.++...|+..+|.+.|.+++... +....+.++|+.+|..+|++++|..+|.+.++ +.|. ...+++|+.+|.++|++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccH
Confidence 99999999999999999999863 33456899999999999999999999999998 7888 57899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhc
Q 048794 840 DDALHYFEELKLNGLDAD-TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLAG 917 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 917 (967)
++|+..|++++. ++|+ ..++++++..|-..|+.+.|+++|.++.. +.|.. ++...|+..+.-.|+..+|+.-++
T Consensus 405 ~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 405 DDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999999998 6775 56899999999999999999999999985 55654 889999999999999999999999
Q ss_pred CCCcCCCCccccc-cceeeeccCCCccc
Q 048794 918 GNCFVQPSEFVSS-ELQVIYAENPRATS 944 (967)
Q Consensus 918 ~~l~~~p~~~~~~-~l~~~~~~~g~~~~ 944 (967)
++++++|+-|.++ +|+...---.+|.+
T Consensus 481 ~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 481 TALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999999993 66665555556655
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-25 Score=232.50 Aligned_cols=606 Identities=14% Similarity=0.081 Sum_probs=397.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhhcCChhhHHHHH
Q 048794 243 VEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGV--QPTAYTYILFIDYYGKSADPGKALETF 320 (967)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 320 (967)
.+.|...|....+..+ +|+-.+---.+.....+++..|+.+|..+..... .||. ...+..++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHH
Confidence 5888888888887643 3544433333444567889999999998766543 3443 334456777889999999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048794 321 EKMKIRGIVPNVVSCNASLYSL---AETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENG 397 (967)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 397 (967)
.++.+..+ -++.++..+...- .....+..+..++...-... +.++...+.|...|...|+++.+..+...++...
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 88887622 1122222222111 22234667777777766554 5677788889999999999999999999888764
Q ss_pred CC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHH
Q 048794 398 CE--PDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTF 475 (967)
Q Consensus 398 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 475 (967)
.. .-...|-.+.++|...|++++|...|.+............+..++..+...|+++.+...|+..... .+.+..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHH
Confidence 11 1233577889999999999999999988876543322455667888999999999999999999886 45566777
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHh-----hcCCChhHHHh
Q 048794 476 NTLLHCLCKNE----EVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRK-----WLYPDHITLCT 546 (967)
Q Consensus 476 ~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 546 (967)
..|...|...+ ..+.|..++.+.+... +.|...|..+...+...+-+.. +..|..+.. ..+..+..++.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777776654 5678888888887775 4577888888887777666655 777777663 35577788889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhc
Q 048794 547 LLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQK 626 (967)
Q Consensus 547 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 626 (967)
++..++..|+++.|...++++....-...+. +
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~---------------------------------d--------------- 489 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANK---------------------------------D--------------- 489 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCc---------------------------------c---------------
Confidence 9999999999999999988876541100000 0
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH-hhHHHHHHHHHccCChHHHHHH
Q 048794 627 KALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDI-STYNLLLDGYGKSGRVEELLKL 705 (967)
Q Consensus 627 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 705 (967)
.+...+...-+.++..+-..++++.|...|..+++. .|+. .++..++-+....+...+|..+
T Consensus 490 ---------------e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 490 ---------------EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred ---------------ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHH
Confidence 000112223344555555566666666666666654 2332 2333444333444566666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhcHHHHHHHHHc------------CCCHHHH
Q 048794 706 YEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGF-SPTPCTYGPLIDGLSK------------SGRLEEA 772 (967)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~g~~~~A 772 (967)
++.+...+ ..++..+.-++..+....++..|.+-|+...+... .++.-+...|++.|.+ .+.++.|
T Consensus 553 lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 553 LKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 66666543 33445555556666666666666665555555411 1233333334444332 2456778
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 773 KKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
+++|.++++.. +.+..+-+-++.+++..|++.+|..+|.++.+.. .....+|.+++.+|..+|+|-.|++.|+.+.+.
T Consensus 632 lq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887754 3366677777778888888888888888887752 223457888888888888888888888887743
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------------------cCCHHHH
Q 048794 853 -GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR-------------------AGMVEEA 912 (967)
Q Consensus 853 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~g~~~~A 912 (967)
..+.+..+...|+.++.+.|.+.+|.+.+..+... .|.++.....++.++.+ .+..++|
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~-~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a 788 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL-APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEA 788 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 33346677778888888888888888888877753 34444554555544432 2456677
Q ss_pred HHhhcCCCcCCCC
Q 048794 913 RKLAGGNCFVQPS 925 (967)
Q Consensus 913 ~~~~~~~l~~~p~ 925 (967)
.++|..+-...+.
T Consensus 789 ~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 789 RRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHhcCCC
Confidence 7777766555444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-28 Score=240.03 Aligned_cols=450 Identities=17% Similarity=0.161 Sum_probs=362.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 048794 371 NMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKE 450 (967)
Q Consensus 371 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 450 (967)
..+..-..+.|++..|++.-..+-..+ +.+......+-..+....+++.....-....... +.-..+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 344555567888888888666555443 3333344444455666666766655444444332 23567888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCH-HHHHHHHHHHhhcCcHhHHHHH
Q 048794 451 GQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDV-LTYNTIIYGLVKEQRVKDAIWF 529 (967)
Q Consensus 451 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 529 (967)
|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|...++.+ |+. .....++..+...|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999863 3356788899999999999999999999998875 443 3445566667778999999999
Q ss_pred HHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCC
Q 048794 530 FHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGIC 609 (967)
Q Consensus 530 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (967)
|.++.+..|.-..+|..|+..+...|+...|+..|++++...
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-------------------------------------- 248 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-------------------------------------- 248 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--------------------------------------
Confidence 999998888888889999999999999999998888877543
Q ss_pred CCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HhhHHH
Q 048794 610 RDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPD-ISTYNL 688 (967)
Q Consensus 610 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 688 (967)
|....+|..|+.+|.+.+.+++|+..|.+.+.. .|+ ..++..
T Consensus 249 -----------------------------------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gN 291 (966)
T KOG4626|consen 249 -----------------------------------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGN 291 (966)
T ss_pred -----------------------------------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccc
Confidence 344567888888888999999999999888865 444 556777
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC
Q 048794 689 LLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR 768 (967)
Q Consensus 689 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 768 (967)
++-.|...|..|-|++.|++++... +.-..+++.+..++...|+..+|.+.|.+++.-. +....+.+.++..|...|.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGK 369 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcc
Confidence 8888999999999999999999874 3345689999999999999999999999999863 4445678889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYF 846 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 846 (967)
+++|..+|..+++- .|+. ...++|+..|.++|++++|+..|++++. +.|+ ..++.+++..|-..|+.+.|++.|
T Consensus 370 ~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 370 IEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred chHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 99999999999984 5554 4899999999999999999999999998 8999 589999999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHH
Q 048794 847 EELKLNGLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVE 910 (967)
Q Consensus 847 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 910 (967)
.+++.. +| -.+++++|+.+|-..|+..+|+.-|+.+++ +.||. +++..++.++.-..+|.
T Consensus 446 ~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 446 TRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred HHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhccc
Confidence 999984 56 467899999999999999999999999996 77886 88888888777554443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-21 Score=217.89 Aligned_cols=261 Identities=18% Similarity=0.069 Sum_probs=191.5
Q ss_pred cCChHHHHHHHHHHHHcCC-Cc-CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 048794 661 VHATEMGLDLFTTMKNAGC-AP-DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAM 738 (967)
Q Consensus 661 ~~~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 738 (967)
.+++++|+..|+..++.+. .| ....+..++..+...|++++|+..|++++... +.....+..++.++...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 4677888888888886541 22 34567777888888888888888888888763 334557777888888888888888
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 048794 739 DLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGG 818 (967)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 818 (967)
..+++++... +.+..++..++.++...|++++|+..|+++++.. +.+...+..++.++.+.|++++|+..|+++++.
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 8888888763 4455678888888888888888888888888763 224567778888888888888888888888873
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----HH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048794 819 IRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTI-----SY-NFMINGLGRSGRIEEALSLFDEMKKRGISP 891 (967)
Q Consensus 819 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 891 (967)
.|+ ...++.++.++...|++++|+..|++++......... .+ ...+..+...|++++|.++++++++. .|
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p 539 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DP 539 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CC
Confidence 555 5778888888888888888888888888642111111 11 11122233468888888888888753 44
Q ss_pred CH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 892 DL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 892 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
+. .++..++.++...|++++|++++++++++.+....
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 44 56778888888888888888888888888776443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-22 Score=225.02 Aligned_cols=251 Identities=15% Similarity=0.088 Sum_probs=209.0
Q ss_pred ccCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHH
Q 048794 695 KSGRVEELLKLYEEMSFRG--CKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 695 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 772 (967)
..+++++|+..|+++...+ .+.....+..++.++...|++++|+..+++++... +.....+..++.++...|++++|
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3478999999999999764 13344578888899999999999999999999863 34456788899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 773 KKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+..|+++++.. +.+..+|..++.++...|++++|+..|+++++ ..|+ ...+..++.++.+.|++++|+..+++++.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999864 33677999999999999999999999999998 4665 67888999999999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-Hh------HHHHHHHHH-hcCCHHHHHHhhcCCCcCC
Q 048794 852 NGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YT------YNSLILNLG-RAGMVEEARKLAGGNCFVQ 923 (967)
Q Consensus 852 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~------~~~l~~~~~-~~g~~~~A~~~~~~~l~~~ 923 (967)
.. +.++..+..++.++...|++++|+..|+++++. .|+. .. +...+..+. ..|++++|++++++++.++
T Consensus 462 ~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 462 NF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred hC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 53 446788999999999999999999999999863 3331 11 122222333 4699999999999999999
Q ss_pred CCcccc-ccceeeeccCCCcccccchhhhh
Q 048794 924 PSEFVS-SELQVIYAENPRATSLSHKHCEY 952 (967)
Q Consensus 924 p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~ 952 (967)
|++..+ ..+|.+|...|++++|...+.+.
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999887 69999999999999988744443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-21 Score=214.09 Aligned_cols=328 Identities=14% Similarity=0.108 Sum_probs=152.9
Q ss_pred HHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccC
Q 048794 512 TIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVA 591 (967)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (967)
.++..+.+.|++++|..+++......|.+...+..++.+....|++++|+..+++++...+..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~----------------- 109 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ----------------- 109 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC-----------------
Confidence 344445566666666666666666666666666666666666666666666666555433111
Q ss_pred CCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048794 592 GPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLF 671 (967)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 671 (967)
......++..+...|++++|...|++.+.. .+.+..++..++..+...|++++|...+
T Consensus 110 --------------------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 110 --------------------PEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred --------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 111222223333333333333333333221 1333444555555555555555555555
Q ss_pred HHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048794 672 TTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSP 751 (967)
Q Consensus 672 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 751 (967)
+.+....+. +...+..+ ..+...|++++|+..++++......++......++.++...|++++|+..+++++... +.
T Consensus 168 ~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~ 244 (656)
T PRK15174 168 RTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LD 244 (656)
T ss_pred HHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 555443211 11122222 2244455555555555555443222222222333344445555555555555555432 22
Q ss_pred ChhcHHHHHHHHHcCCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 048794 752 TPCTYGPLIDGLSKSGRLEE----AKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSY 826 (967)
Q Consensus 752 ~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~ 826 (967)
+...+..++.++...|++++ |+..|+++++.. +.+..++..++.++...|++++|+..+++++. ..|+ ...+
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~ 321 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVR 321 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 33344445555555555543 455555555432 11333455555555555555555555555554 2333 3344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
..++.++...|++++|+..|+++...+ +.+...+..++.++...|++++|...|++++
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555555555555555554421 1112222233444555555555555555554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-18 Score=178.36 Aligned_cols=395 Identities=13% Similarity=0.105 Sum_probs=229.7
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 048794 203 SDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEAL 282 (967)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 282 (967)
...|++++|.+++.++++.. +.+...|..|..+|-..|+.+++...+--.--.. +.|...|-.+.....+.|+++.|.
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 33477777777777776654 3356666777777777777776665544433332 225566666666666667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHH----HHHHHHHhcCCHHHHHHHHHHH
Q 048794 283 EVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCN----ASLYSLAETGRIGEAKTIFNGL 358 (967)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~ 358 (967)
-.|.++++.. +++...+..-...|-+.|+...|.+.|.++.....+.+..-+. .++..+...++.+.|.+.+...
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777766654 3344444444555666666666666666666553211111111 1122333334444444444443
Q ss_pred HHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048794 359 KNS-GFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTV 437 (967)
Q Consensus 359 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 437 (967)
... +-..+...++.++..+.+...++.+...+.........+|..-+..- -..... ... +-. ...+..++.
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~~~~~~--~~~-~~~-~~~~~s~~l 378 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----ERRREE--PNA-LCE-VGKELSYDL 378 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----hhcccc--ccc-ccc-CCCCCCccc
Confidence 331 11122233444444444444444444444444332222222211000 000000 000 000 011222333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 048794 438 VTYNTLLSGLGKEGQVQKAIELFEGMTDHGCF--PNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIY 515 (967)
Q Consensus 438 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 515 (967)
.. ..++-++.+....+....+...+.+.... .+...+..+..++...|.+.+|+.++..+.......+..+|..++.
T Consensus 379 ~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 33 22333444555555555555556655533 3567888999999999999999999999998865567789999999
Q ss_pred HHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcc
Q 048794 516 GLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDK 595 (967)
Q Consensus 516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (967)
+|...|.+++|++.|+++....|.+..+-..|...+.+.|+.++|++.+.......+...+..
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~----------------- 520 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC----------------- 520 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc-----------------
Confidence 999999999999999999999999999999999999999999999999887653333222222
Q ss_pred hHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHH
Q 048794 596 SILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVK 637 (967)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 637 (967)
+.+++..+.....+.+...|+.++-...-..
T Consensus 521 -----------a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 521 -----------AWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred -----------cccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2233334445566777888877775444433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-17 Score=168.62 Aligned_cols=513 Identities=13% Similarity=0.040 Sum_probs=274.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 352 KTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDM 431 (967)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 431 (967)
..++++..+. +|.++..|. +-....+.+.|+-++..+++. ++.+.. |.-++.+..-++.|..+++++++.
T Consensus 366 ~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555554 233444443 334456666677777777764 233333 334455666778888888887763
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCC--
Q 048794 432 KLAPTVVTYNTLLSGLGKEGQVQKAIELFEGM----TDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWP-- 505 (967)
Q Consensus 432 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-- 505 (967)
++.+...|......--.+|+.+...+++.+- ...|+..+..-|..=...|-..|..-.+..++...+.-|+..
T Consensus 436 -iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 436 -IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred -CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4446777776666666778877777776553 345677777777777777777788887777777776665432
Q ss_pred CHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhh
Q 048794 506 DVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVG 585 (967)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (967)
...+|..-...+.+.+.++-|+.+|..+.+.+|.+...|......-...|..+.-..++++++...+..
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pka----------- 583 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA----------- 583 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc-----------
Confidence 235677777778888888888888888888888888888877777777777777777777666543211
Q ss_pred hhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 048794 586 GILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATE 665 (967)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 665 (967)
+.+..+.+..+...|+...|+.++....... +.+...+.+-+....++.+++
T Consensus 584 --------------------------e~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 584 --------------------------EILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELE 635 (913)
T ss_pred --------------------------hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHH
Confidence 1112222333333444444444444433221 223444444444444555555
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 666 MGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLV 745 (967)
Q Consensus 666 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 745 (967)
.|..+|.+.... .|+...|..-+....-.++.++|++++++.++.. +.-...|..+++.+-+.++.+.|.+.|..-.
T Consensus 636 raR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 636 RARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred HHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 555555544443 3344444444444444455555555555555442 2122344444555555555555555444433
Q ss_pred hCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HH
Q 048794 746 SGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LK 824 (967)
Q Consensus 746 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~ 824 (967)
.. -+..+..|..++..-.+.|..-.|..++++..-.++ .+...|...+.+-.+.|+.+.|..+..++++. -|+ ..
T Consensus 713 k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~ 788 (913)
T KOG0495|consen 713 KK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGL 788 (913)
T ss_pred cc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccch
Confidence 32 122223444444444445555555555555544331 24445555555555555555555555555443 232 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNL 903 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~ 903 (967)
.|..-+....+-++-......+++. ..++.++..++..+....++++|.+.|.++++ ..||. ++|..+....
T Consensus 789 LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 789 LWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFE 861 (913)
T ss_pred hHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHH
Confidence 3333333333333333333333322 22334444455555555555555555555553 22222 4444444455
Q ss_pred HhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 904 GRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 904 ~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
.++|.-++-..++.+...-.|.+-.
T Consensus 862 l~hG~eed~kev~~~c~~~EP~hG~ 886 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCETAEPTHGE 886 (913)
T ss_pred HHhCCHHHHHHHHHHHhccCCCCCc
Confidence 5555555555555555555555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-19 Score=209.84 Aligned_cols=422 Identities=11% Similarity=0.015 Sum_probs=238.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 048794 402 VIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHC 481 (967)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (967)
.....-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..++++..+. -+.+...+..+..+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 3334444555555666666666666555322 223444555555666666666666666665554 13334445555555
Q ss_pred HHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHH
Q 048794 482 LCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAF 561 (967)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 561 (967)
+...|++++|...+++++... +.+.. +..++..+...|+.++|+..++++.+..|.+...+..++.++...+..++|+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 556666666666666665553 22333 5555555556666666666666666655555555555555555555555555
Q ss_pred HHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHh
Q 048794 562 RLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTEN 641 (967)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 641 (967)
+.++++.... + ..
T Consensus 171 ~~l~~~~~~p----~---------------------------------------------------------------~~ 183 (765)
T PRK10049 171 GAIDDANLTP----A---------------------------------------------------------------EK 183 (765)
T ss_pred HHHHhCCCCH----H---------------------------------------------------------------HH
Confidence 4443211000 0 00
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCh---HHHHHHHHHHHhCC-CCCC
Q 048794 642 LGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRV---EELLKLYEEMSFRG-CKPN 717 (967)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~-~~~~ 717 (967)
. .........++.... .......+++ ++|+..++.+.... ..|+
T Consensus 184 ~--~l~~~~~~~~~r~~~------------------------------~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 184 R--DLEADAAAELVRLSF------------------------------MPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred H--HHHHHHHHHHHHhhc------------------------------ccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 0 000000000000000 0001111223 56666666666431 1121
Q ss_pred hh-hH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CH
Q 048794 718 TI-SH----NIVISGLVKSNSIDKAMDLFYNLVSGGFS-PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP---NC 788 (967)
Q Consensus 718 ~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~ 788 (967)
.. .+ ...+..+...|++++|+..|++++..+.+ |+. ....++.+|...|++++|+..|+++.+..... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 11 11 11122345567777777777777665321 211 22224667777777777777777776542111 12
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGG-----------IRPD---LKSYSVLVDCLCMVGRVDDALHYFEELKLNGL 854 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 854 (967)
.....++.++...|++++|++.++++.... ..|+ ...+..++.++...|++++|+..+++++...
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 345555666677777777777777776631 1123 2345667788888888888888888888753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 855 DADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+.+...+..++.++...|++++|++.++++++. .|.+...+..++.++...|++++|+..++++++..|+++..
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVL-EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 446677888888888888888888888888863 23335777788888888888888888888888888888886
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-16 Score=161.52 Aligned_cols=618 Identities=11% Similarity=0.049 Sum_probs=474.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 048794 206 GNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVF 285 (967)
Q Consensus 206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 285 (967)
+|..+|+.++..+.+.++ .++..|.+-.+.--..|++..|..++..-.+... .+...|..-+ +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretnP-~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cp-rSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNP-KHPPGWIASARLEEVAGKLSVARNLIMKGCEECP-RSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCC-chHHHHHHHH----hcCChHHHHHHH
Confidence 577889999998887764 3677787777777788999999888877665533 3666665444 456677788777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048794 286 NNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPN-VVSCNASLYSLAETGRIGEAKTIFNGLKNSGFA 364 (967)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 364 (967)
....+.. +.++..+..... --.+...-.+++++..+. .|+ +..|. +.......++|.-++.+..+.- +
T Consensus 339 A~Avr~~-P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~--iP~sv~LWK----aAVelE~~~darilL~rAvecc-p 407 (913)
T KOG0495|consen 339 ANAVRFL-PTSVRLWLKAAD---LESDTKNKKRVLRKALEH--IPRSVRLWK----AAVELEEPEDARILLERAVECC-P 407 (913)
T ss_pred HHHHHhC-CCChhhhhhHHh---hhhHHHHHHHHHHHHHHh--CCchHHHHH----HHHhccChHHHHHHHHHHHHhc-c
Confidence 7776652 333333332221 222334445667776665 333 33333 3455667777888998888752 3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHH
Q 048794 365 PDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRM----KDMKLAPTVVTY 440 (967)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~ 440 (967)
.+... ..+|.+..-++.|..+++...+. ++.+..+|..-...--..|+.+...+++.+. ...|+..+...|
T Consensus 408 ~s~dL----wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMDL----WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHHH----HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 33333 34567778889999999998875 5777788887777777889888888887764 345777788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHh
Q 048794 441 NTLLSGLGKEGQVQKAIELFEGMTDHGCFP--NTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLV 518 (967)
Q Consensus 441 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 518 (967)
..=...|-..|..-.+..+.......|+.. ...+|..-...|.+.+.++-|+.+|..+++-. +.+..+|......-.
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHH
Confidence 888888888899999998888888777553 34678888888999999999999999988774 446778888777777
Q ss_pred hcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHH
Q 048794 519 KEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSIL 598 (967)
Q Consensus 519 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (967)
..|..++-..+|+++....|.....|...+..+...|+...|..++..++...+
T Consensus 562 ~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-------------------------- 615 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-------------------------- 615 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--------------------------
Confidence 889999999999999999999999999999999999999999999988876653
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048794 599 FAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAG 678 (967)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 678 (967)
.+..+.+..+...+.+..++.|+.+|.+.-. ..+...+|+--+......++.++|++++++.++.
T Consensus 616 -----------nseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 616 -----------NSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred -----------CcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 3445556667778889999999999988744 4566677877777777889999999999999986
Q ss_pred CCcC-HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHH
Q 048794 679 CAPD-ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYG 757 (967)
Q Consensus 679 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 757 (967)
-|+ ...|..+++.+.+.++.+.|.+.|.+-.+. ++.....|..+...--+.|..-.|..++++..-.+ +.+...|.
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHH
Confidence 455 456888999999999999999999887766 35566778888888888899999999999998875 45566888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVG 837 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 837 (967)
..+.+-.+.|+.+.|..++.++++. ++.+...|..-+.+.-+.++-.+++..+++.. -|..+...++..+....
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHHHHHHHHHHHH
Confidence 8999999999999999999999987 45566788888888777777677777776653 35567777888888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHH
Q 048794 838 RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSL 899 (967)
Q Consensus 838 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l 899 (967)
++++|.++|.+++..+ +....+|..+...+.+.|.-++-.+++.++.. .+|.- ..|.+.
T Consensus 832 k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 9999999999999864 34566788888888999999999999999985 34443 555444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-20 Score=206.72 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=191.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC
Q 048794 618 IIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG 697 (967)
Q Consensus 618 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 697 (967)
+++.+...|++++|...++++.... +.+...+..+. .+...|++++|+..++.+++....++......++..+...|
T Consensus 150 la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g 226 (656)
T PRK15174 150 HLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVG 226 (656)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCC
Confidence 3444444555555555554443322 23344444443 47789999999999999988754344555556677889999
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHH
Q 048794 698 RVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDK----AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAK 773 (967)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 773 (967)
++++|+..|+++.... +.+...+..++..+...|++++ |+..+++++... +.+..++..++.++...|++++|+
T Consensus 227 ~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 227 KYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999875 4466788889999999999986 899999999874 456678899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 774 KLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
..++++++.. +.+...+..++.++.+.|++++|++.|+++... .|+. ..+..++.++...|++++|...|+++++.
T Consensus 305 ~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 305 PLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999864 235668888999999999999999999999984 6764 34555688899999999999999999974
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
.|+.. ...+++|...|.++.+.
T Consensus 382 --~P~~~-----------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 382 --RASHL-----------PQSFEEGLLALDGQISA 403 (656)
T ss_pred --Chhhc-----------hhhHHHHHHHHHHHHHh
Confidence 34331 34556888888888753
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-16 Score=162.78 Aligned_cols=400 Identities=15% Similarity=0.116 Sum_probs=262.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 048794 123 YTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKF 202 (967)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 202 (967)
......+..+...|++++|.+++.++.+.. +.....|..|..+|-..|+.+++...+-..--.+ +-|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 333334444445588999999988888763 6677788888888888888888888776664432 33557788888888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHhcCCCH
Q 048794 203 SDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTL----ICGLLRLDRV 278 (967)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~ 278 (967)
.+.|.++.|.-.+.+.++.. +++...+-.-...|-+.|+...|...|.++.....+.+..-+..+ ++.+...++.
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 88888888888888888775 345555566677788888888888888888877543333333333 3445556666
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 279 EEALEVFNNMEIL-GVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNG 357 (967)
Q Consensus 279 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 357 (967)
+.|.+.++..... +-..+...+..++..+.+...++.+......+......+|..-|..- ..++. .-. .+..
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~~-~~~-~~~~ 369 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRRE-EPN-ALCE 369 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhccc-ccc-cccc
Confidence 7888877776652 22344455666777777777777777776666553223332221100 00000 000 0000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048794 358 LKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENG--CEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAP 435 (967)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 435 (967)
...+..++... ..+.-++.+.+..+....++....... +.-+...+..+..++...|.+.+|+.+|..+......-
T Consensus 370 -~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 370 -VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred -CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 01112233333 223334555555555555666666655 33345578888899999999999999999988765555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC--------CCCCH
Q 048794 436 TVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRN--------CWPDV 507 (967)
Q Consensus 436 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~ 507 (967)
+...|..+..+|...|.++.|.+.++..+... |.+......|...+...|+.++|.+.+..+..-+ ..|+.
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ 526 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPER 526 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHH
Confidence 67788888999999999999999999988762 4456667778888888999999999988865322 23444
Q ss_pred HHHHHHHHHHhhcCcHhHHHHHHHHHHh
Q 048794 508 LTYNTIIYGLVKEQRVKDAIWFFHQMRK 535 (967)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (967)
.........+.+.|+.++-+.+-..+..
T Consensus 527 ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 527 RILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5555566678888888876655555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-18 Score=196.95 Aligned_cols=190 Identities=12% Similarity=0.024 Sum_probs=96.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-cCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCC
Q 048794 658 LLEVHATEMGLDLFTTMKNAGCA-PDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKP---NTISHNIVISGLVKSNS 733 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 733 (967)
+...|++++|+..|+.+++.+.+ |+. ....++..|...|++++|+..|+++....+.. .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 34567777788888777765422 222 22234667777788888888887776542111 01234445556667777
Q ss_pred HHHHHHHHHHHHhCCCC-----------CC---hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048794 734 IDKAMDLFYNLVSGGFS-----------PT---PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFG 799 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~-----------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 799 (967)
+++|...++++....++ |+ ...+..++..+...|++++|+++++++.... +.+...+..++.++.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 77777777776654211 01 1122333444444444444444444444432 113334444444444
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
..|++++|++.+++++. ..|+ ...+..++..+...|++++|...++++++
T Consensus 405 ~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 405 ARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred hcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444444444444444 2333 23344444444444444444444444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=201.03 Aligned_cols=303 Identities=17% Similarity=0.154 Sum_probs=233.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc
Q 048794 655 IHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPN---TISHNIVISGLVKS 731 (967)
Q Consensus 655 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 731 (967)
+..+...|++++|+..|.++++.+ +.+..++..++..+...|++++|+.+++.+...+..++ ...+..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445567888999999999998874 23566788888889999999999999998887532111 13567778888999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC----VIYNILINGFGKTGDVETA 807 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A 807 (967)
|++++|...|.++.+.. +.+..++..++.++.+.|++++|++.++++.+.+..+.. ..+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999988753 445567888899999999999999999998876433221 2456677788889999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 808 CELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+..|+++++. .|+ ...+..++.++.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+
T Consensus 200 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999874 455 5678888999999999999999999998753222245677888999999999999999999886
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccceeeec---cCCCcccccc----hhhhhhcccccc
Q 048794 887 RGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIYA---ENPRATSLSH----KHCEYLASSCTF 959 (967)
Q Consensus 887 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~~---~~g~~~~~~~----~~~~~~~~~~~~ 959 (967)
..|+...+..++..+.+.|++++|..+++++++.+|+++.+..+...+. ..|+.+++.. ...+.+.++|.|
T Consensus 278 --~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 --EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred --hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 3567666688899999999999999999999999999887643333333 2456666443 222357889999
Q ss_pred cccc
Q 048794 960 VCPY 963 (967)
Q Consensus 960 ~~~~ 963 (967)
+|.+
T Consensus 356 ~c~~ 359 (389)
T PRK11788 356 RCRN 359 (389)
T ss_pred ECCC
Confidence 9864
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-19 Score=189.39 Aligned_cols=304 Identities=14% Similarity=0.107 Sum_probs=167.6
Q ss_pred HHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCc
Q 048794 515 YGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPD 594 (967)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (967)
..+...|++++|...|.++.+..|.+..++..++..+...|++++|+..++.++.......
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------------------- 103 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR------------------- 103 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH-------------------
Confidence 3455566777777777777766666666666666666666666666665554432110000
Q ss_pred chHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048794 595 KSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTM 674 (967)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 674 (967)
......+..++..+...|++++|+..|+++
T Consensus 104 --------------------------------------------------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~ 133 (389)
T PRK11788 104 --------------------------------------------------EQRLLALQELGQDYLKAGLLDRAEELFLQL 133 (389)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 001123455566666777777777777777
Q ss_pred HHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 675 KNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT----ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS 750 (967)
Q Consensus 675 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 750 (967)
.+.. +++..++..++.++.+.|++++|++.++.+...++.+.. ..+..++..+...|++++|...++++++.. +
T Consensus 134 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 211 (389)
T PRK11788 134 VDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-P 211 (389)
T ss_pred HcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-c
Confidence 6542 234556667777777777777777777777665322211 122334445555566666666666655542 2
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLV 830 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 830 (967)
.....+..++..|.+.|++++|++.++++.+.++.....++..++.+|...|++++|+..++++.+. .|+...+..++
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la 289 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALA 289 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 2333455555666666666666666666655321111234555555666666666666666665552 44444445556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGR---SGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
.++.+.|++++|..+++++++. .|+...+..+...+.. .|+.+++...++++++.++.|++
T Consensus 290 ~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 290 QLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6666666666666666665553 3444444444444332 34556666666655544444444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-16 Score=175.31 Aligned_cols=468 Identities=16% Similarity=0.114 Sum_probs=309.5
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048794 376 CYSKVGQVDEAVTLLSEMVENGCEPDV-IVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQ 454 (967)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 454 (967)
...+.|+++.|+..|.++.+.. |+. .....++..+...|+.++|+..+++..... .........+...+...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 4668899999999999988764 443 122277788888899999999999988422 224445555566788889999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHH
Q 048794 455 KAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMR 534 (967)
Q Consensus 455 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (967)
+|+++++++.+.. +.+...+..++..+...++.++|++.+.++.+.+ |+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999998873 4456777777888889999999999999998875 444444444444555666766999999999
Q ss_pred hhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcc
Q 048794 535 KWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSV 614 (967)
Q Consensus 535 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (967)
+..|.+...+..+..+..+.|-...|.+++++.-.. .....+..+
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~----f~~~~~~~l------------------------------- 241 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL----VSAEHYRQL------------------------------- 241 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc----cCHHHHHHH-------------------------------
Confidence 999999999999999999999999998887652110 000000000
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHhh-----HHH
Q 048794 615 VVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNA-GCAPDIST-----YNL 688 (967)
Q Consensus 615 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-----~~~ 688 (967)
..+.+.+..+...... ..... +.--.+.|+.-++.++.. +..|.... ..-
T Consensus 242 ------------~~~~~a~~vr~a~~~~--~~~~~----------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D 297 (822)
T PRK14574 242 ------------ERDAAAEQVRMAVLPT--RSETE----------RFDIADKALADYQNLLTRWGKDPEAQADYQRARID 297 (822)
T ss_pred ------------HHHHHHHHHhhccccc--ccchh----------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH
Confidence 0000111110000000 00000 001234556666666552 11132211 122
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhcHHHHHHHH
Q 048794 689 LLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGF-----SPTPCTYGPLIDGL 763 (967)
Q Consensus 689 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 763 (967)
.+.++...|+++++++.|+.+...+.+....+...++.+|...+++++|..+|..+..... +++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 3445677788888888888888776443445677888888888888888888888876531 12222345677788
Q ss_pred HcCCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGC-------------KPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSV 828 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~-------------~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ 828 (967)
...+++++|..+++++.+..+ .||.. ....++..+.-.|++.+|++.++++... .| |......
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~ 455 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIA 455 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 888888888888888876311 12222 3444566677888888888888888774 45 4677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 048794 829 LVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGM 908 (967)
Q Consensus 829 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 908 (967)
++.++...|.+.+|.+.++.+...+ +.+..+....+.++...|++.+|..+.+.+.+ ..|+......|......+..
T Consensus 456 ~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r~~~~h~~ 532 (822)
T PRK14574 456 LASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDRQRKVHNM 532 (822)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHHHHHHhhh
Confidence 8888888888888888887776642 33455667788888888888888888888875 34554444444444444444
Q ss_pred HHHHH
Q 048794 909 VEEAR 913 (967)
Q Consensus 909 ~~~A~ 913 (967)
++...
T Consensus 533 ~~l~~ 537 (822)
T PRK14574 533 YELRV 537 (822)
T ss_pred HHHHh
Confidence 44443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-16 Score=179.57 Aligned_cols=232 Identities=11% Similarity=0.087 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHHhCCC-CCCh-h----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHH
Q 048794 699 VEELLKLYEEMSFRGC-KPNT-I----SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 699 ~~~A~~~~~~~~~~~~-~~~~-~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 772 (967)
.|.|+.-++.+...-. .|.. . +..-.+-++...+++.++++.|+.+...+.+...-+...++++|...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 3566666677665211 1221 1 23345567788999999999999999876554445777899999999999999
Q ss_pred HHHHHHHHHCCC-----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHH
Q 048794 773 KKLFEEMLDYGC-----KPNCVIYNILINGFGKTGDVETACELFKQMIKGGI-----------RPD---LKSYSVLVDCL 833 (967)
Q Consensus 773 ~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~ 833 (967)
+.+|+++..... +++......|..+|...+++++|..+++++.+... .|+ ......++.++
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 999999976421 22333457788899999999999999999987211 233 34556678889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHH
Q 048794 834 CMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEA 912 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 912 (967)
...|++.+|.+.+++++... +.+......+++++...|.+.+|.+.++.+.. +.|+. .+....+.++...|++.+|
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999998753 55888899999999999999999999988774 56665 7778999999999999999
Q ss_pred HHhhcCCCcCCCCccccccce
Q 048794 913 RKLAGGNCFVQPSEFVSSELQ 933 (967)
Q Consensus 913 ~~~~~~~l~~~p~~~~~~~l~ 933 (967)
....+++++..|+++....|.
T Consensus 504 ~~~~~~l~~~~Pe~~~~~~l~ 524 (822)
T PRK14574 504 ELLTDDVISRSPEDIPSQELD 524 (822)
T ss_pred HHHHHHHHhhCCCchhHHHHH
Confidence 999999999999999864433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-17 Score=155.71 Aligned_cols=482 Identities=14% Similarity=0.124 Sum_probs=295.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCc----ccH
Q 048794 261 NLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY-ILFIDYYGKSADPGKALETFEKMKIRGIVPNV----VSC 335 (967)
Q Consensus 261 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 335 (967)
+-.++..|.+.|.....+.+|+..++-+.+....|+...+ ..+...+.+...+.+|+..++-....-...+. ...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 3444455666777777888888888888777666665443 34556677778888888888776665222122 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCh------------h
Q 048794 336 NASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDV------------I 403 (967)
Q Consensus 336 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~ 403 (967)
+.+...+.+.|.+++|+..|+...+. .|+..+-..|+-++...|+.+...+.|..++.....+|. .
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44455578889999999999988876 577776666666777888999999999888764322222 2
Q ss_pred hHHHHHH-----HHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHH
Q 048794 404 VMNTLID-----TLYKAD--RVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFN 476 (967)
Q Consensus 404 ~~~~l~~-----~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 476 (967)
..+.-+. .+-+.+ +-++++-.--+++..-+.|+.. .| .+-+++.++.-.-..+..+.. .
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la~dle--i 423 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELAIDLE--I 423 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhhhhhh--h
Confidence 2221111 111100 0111111111111111111100 00 112222222211110000111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHH-Hhh-cCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhc
Q 048794 477 TLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYG-LVK-EQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKD 554 (967)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 554 (967)
.-..-+.++|+++.|+++++-..+++-.......+.+... |.+ ..++.+|..+-+........++.....-
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nk------- 496 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNK------- 496 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcC-------
Confidence 1122355667777777766666555322222222222222 122 2234444444333333222221111111
Q ss_pred CChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHH
Q 048794 555 GQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDL 634 (967)
Q Consensus 555 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 634 (967)
T Consensus 497 -------------------------------------------------------------------------------- 496 (840)
T KOG2003|consen 497 -------------------------------------------------------------------------------- 496 (840)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 048794 635 FVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGC 714 (967)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 714 (967)
...-...|++++|...|++.+... .....++..++-.+...|+.++|+++|-++... .
T Consensus 497 --------------------gn~~f~ngd~dka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 497 --------------------GNIAFANGDLDKAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred --------------------CceeeecCcHHHHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-H
Confidence 112234567777777777777542 234455666677778888888888888776543 2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 715 KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNIL 794 (967)
Q Consensus 715 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 794 (967)
..+...+..+.+.|....+...|++++.++.+. ++.++.++..+++.|-+.|+-+.|.+.+=+-... ++.+..+..+|
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 346667778888888888889999988887776 6778888999999999999999999887666654 56688899999
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 795 INGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLV-DCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
+..|....-+++|+.+|+++.- +.|+..-|..++ .|+.+.|++.+|+++|+..... ++.+..++..|..++...|
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 9999999899999999999876 689988888775 5666789999999999998764 6778888888888888777
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-14 Score=150.34 Aligned_cols=273 Identities=17% Similarity=0.178 Sum_probs=200.9
Q ss_pred HHHHHHHccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 048794 4 VFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGI 83 (967)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 83 (967)
++..|+.-|+.|+.-||..|+..|+..|+.+.|- .|..|..+..+.....+++++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 5778999999999999999999999999999998 8888888877778888999998888888877655
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHH
Q 048794 84 KPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDE-GCGPDVVTYTV 162 (967)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ 162 (967)
.|..++|+.|..+|...||... |+...+ ....+...+...|.-..-..++..+.-. +.-|+. ..
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---EN 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HH
Confidence 6889999999999999999876 333222 2233444555556555555555554322 222333 44
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC
Q 048794 163 LIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDC-GNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVG 241 (967)
Q Consensus 163 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 241 (967)
.+....-.|.|+.+++++..+...... .+... .++-+... ..+++...+...+.. .++..++..++..-...|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 555566777888888888776432211 11111 24444332 233443333333332 479999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 048794 242 NVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSAD 312 (967)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 312 (967)
+.+.|..++.+|++.|.+.+.+.|..|+.+ .++...+..++..|...|+.|+..|+...+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999999999999999877 77888889999999999999999999887777777555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-16 Score=151.65 Aligned_cols=483 Identities=14% Similarity=0.116 Sum_probs=324.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 048794 368 VTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVM-NTLIDTLYKADRVDEAWEMFCRMKDMKLAPT----VVTYNT 442 (967)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ 442 (967)
.++..|.+-|.......+|+..++.+++...-|+...+ ..+...+.+...+.+|++.++...+.-+..+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34445556666666778888889888887766665543 3355667788889999999988776422222 345566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCC------------CCHHHH
Q 048794 443 LLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCW------------PDVLTY 510 (967)
Q Consensus 443 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~ 510 (967)
+...+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+-+...+.|.+++..... |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 666778899999999999998875 578887777787888889999999999988754222 222222
Q ss_pred HHHHHH-----HhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhh
Q 048794 511 NTIIYG-----LVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVG 585 (967)
Q Consensus 511 ~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (967)
+..+.. ..+ .+-..|.+..-...+...|-..+-...+. +=.++.++....
T Consensus 360 ~eai~nd~lk~~ek-~~ka~aek~i~ta~kiiapvi~~~fa~g~--------dwcle~lk~s~~---------------- 414 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEK-ENKADAEKAIITAAKIIAPVIAPDFAAGC--------DWCLESLKASQH---------------- 414 (840)
T ss_pred HHHHhhHHHHHHHH-hhhhhHHHHHHHHHHHhccccccchhccc--------HHHHHHHHHhhh----------------
Confidence 221111 111 11112222222222211111100000000 001111111000
Q ss_pred hhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCh
Q 048794 586 GILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLE-VHAT 664 (967)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 664 (967)
. +....+-..-+-.+.++|+++.|.+++.-+.++.....+..+-+..+-.+.+ .+++
T Consensus 415 --------~--------------~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~ 472 (840)
T KOG2003|consen 415 --------A--------------ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDF 472 (840)
T ss_pred --------h--------------hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccch
Confidence 0 0000111123456889999999999998876554444444333332322333 4467
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 665 EMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNL 744 (967)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 744 (967)
.+|..+-...+... .-+..+...-++.....|++++|...|++++..+ ..-..++..++-.+...|+.++|++.|-++
T Consensus 473 ~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 473 ADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred hHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 88887777776543 3456666666667778899999999999998653 111234555666788899999999999887
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH
Q 048794 745 VSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLK 824 (967)
Q Consensus 745 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 824 (967)
... ...+..++..++..|....+...|++++-++... ++.|+.+...|+..|-+.|+-..|.+.+-.-..- ++-+..
T Consensus 551 h~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie 627 (840)
T KOG2003|consen 551 HAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIE 627 (840)
T ss_pred HHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchH
Confidence 654 3445667888999999999999999999998875 5668889999999999999999999987766552 344578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNF-MINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
+...|+..|....-+++|+.+|+++.- +.|+..-|.. ++.++.+.|++++|.++|+...+. +|.+.+.+.-|....
T Consensus 628 ~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~ 704 (840)
T KOG2003|consen 628 TIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHh
Confidence 899999999998899999999999875 5788877764 566778999999999999999875 777778887777776
Q ss_pred HhcC
Q 048794 904 GRAG 907 (967)
Q Consensus 904 ~~~g 907 (967)
...|
T Consensus 705 ~dlg 708 (840)
T KOG2003|consen 705 GDLG 708 (840)
T ss_pred cccc
Confidence 6655
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-16 Score=153.90 Aligned_cols=285 Identities=13% Similarity=0.069 Sum_probs=234.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHH
Q 048794 643 GVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHN 722 (967)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 722 (967)
+...+.......+..+...+++.+..++.+.+.+.. ++....+..-+..+...|+..+-..+-.++.+.. |..+.+|.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 345566777777888899999999999999999875 4455555555668888999999888888988874 55778999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048794 723 IVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG 802 (967)
Q Consensus 723 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 802 (967)
+++--|...|+..+|.++|.++...+.. -...|...+..|.-.|..++|...|..+.+. ++-......-++.-|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc
Confidence 9999999999999999999999886432 2347889999999999999999999999875 2223334455666788899
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHhcCCHH
Q 048794 803 DVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN-----GLDA-DTISYNFMINGLGRSGRIE 875 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~ 875 (967)
+.+-|.+.|.++.. +.|+ +..++-++-+....+.+.+|..+|+.++.. +-.+ -..++++|+.+|.+.++++
T Consensus 395 n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999999988 6776 567888888888999999999999998731 1111 3456889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-cccee
Q 048794 876 EALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQV 934 (967)
Q Consensus 876 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~ 934 (967)
+|+..+++++.. .+.+.+++.+++.++...|+++.|+.+|.|+|.++|+|..+ -.|+.
T Consensus 473 eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 473 EAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 999999999975 56677999999999999999999999999999999999776 34443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-13 Score=131.35 Aligned_cols=453 Identities=12% Similarity=0.058 Sum_probs=313.7
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 048794 308 GKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAV 387 (967)
Q Consensus 308 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 387 (967)
...++...|..+|+++.... ..+...|...+.+-.++.....|..++++....- |.-...|-..+.+--..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHH
Confidence 34566777888888877654 3366777777888888889999999999888752 222234444444445678999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 048794 388 TLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDH- 466 (967)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 466 (967)
++|+.-.+- .|+...|.+.+..-.+-+.++.|..++++..-. .|++.+|......-.++|....+..+++...+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999998875 799999999999999999999999999998753 488899988888888899999999999888764
Q ss_pred CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHhhcCc---HhHHHH-----HHHHHHhh
Q 048794 467 GC-FPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPD-VLTYNTIIYGLVKEQR---VKDAIW-----FFHQMRKW 536 (967)
Q Consensus 467 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~---~~~A~~-----~~~~~~~~ 536 (967)
|- ..+...+.++..--..+..++.|.-+++-.+..-+... ...+..+...-.+-|+ +++++- -|++..+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 10 11233444444444567788999999988877632111 3444444444333444 445543 35556667
Q ss_pred cCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchH
Q 048794 537 LYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVV 616 (967)
Q Consensus 537 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (967)
.|.|..+|...++.-...|+.+.-.+.|++++...++..+..+|...|-.-+ +
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi---------------------------n 370 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI---------------------------N 370 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH---------------------------H
Confidence 8899999999999999999999999999999999999888998887652111 1
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 048794 617 PIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYL--IHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYG 694 (967)
Q Consensus 617 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 694 (967)
-.+..-....|.+.+.++|..+++-.+......+-..+ +.-..++.+...|.+++...+.. .|....+...+..-.
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHH
Confidence 11222334566777777777776654444443333333 33344677777777777777654 566666666666667
Q ss_pred ccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhcHHHHHHHHHcCCCHHHHH
Q 048794 695 KSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGF-SPTPCTYGPLIDGLSKSGRLEEAK 773 (967)
Q Consensus 695 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 773 (967)
+.+++|....+|++.+.-+ |.+..+|...+..-...|+.+.|..+|+-+++... +.....+...++.-...|.++.|.
T Consensus 449 qL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 7778888888888777764 44566777777777777888888888877776522 112234555666666777788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 774 KLFEEMLDYGCKPNCVIYNILINGF 798 (967)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (967)
.+|+++++. .+...+|...+..-
T Consensus 528 ~LYerlL~r--t~h~kvWisFA~fe 550 (677)
T KOG1915|consen 528 ALYERLLDR--TQHVKVWISFAKFE 550 (677)
T ss_pred HHHHHHHHh--cccchHHHhHHHHh
Confidence 888887774 34555666666543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.2e-13 Score=129.13 Aligned_cols=439 Identities=11% Similarity=0.146 Sum_probs=220.9
Q ss_pred ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH-HHHHHHH
Q 048794 51 NAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNV-YTFTICI 129 (967)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 129 (967)
+...|....+.-..++++..|.++|+++...+ ..+...|...+..-.+......|+.+++.+...- |.+ ..|.-.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHH
Confidence 44555555555556666677777777776543 3444455566666666677777777777766542 222 2344555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 048794 130 RILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIE 209 (967)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 209 (967)
..--..|++..|.++|++..+ ..|+..+|.+.+..-.+-+.++.|..+|+...- +.|+..+|.-..+.-.+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHH
Confidence 555566777777777777665 367777777777777777777777777777653 3466666666666666677777
Q ss_pred HHHHHHHHHHhC-C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHH--
Q 048794 210 VVKEFWSQMVAD-G-YAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPN-LHTYNTLICGLLRLDRVEEALEV-- 284 (967)
Q Consensus 210 ~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~-- 284 (967)
.++.++...+.. | -..+...+.++...-.++..++.|..+|.-.+..-+... ...|......--+.|+.....++
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 777776665543 1 011223344444444455566666666665555321111 22233333222233333222222
Q ss_pred ------HHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-cccHHHHH--------HHHHhcCCHH
Q 048794 285 ------FNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPN-VVSCNASL--------YSLAETGRIG 349 (967)
Q Consensus 285 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~--------~~~~~~g~~~ 349 (967)
++.+.+.+ +.|..++-..++.-...|+.+...+++++++..-.+.+ ...|...+ ..-....+.+
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 22222221 34444555555555555666666666666554411111 01111111 1112334455
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048794 350 EAKTIFNGLKNSGFAPDSVTYNMMMKCYS----KVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMF 425 (967)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 425 (967)
.+.++++...+. +|....||..+--.|+ +..++..|.+++..++.. -|...+|...|..-.+.++++.+..++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555442 2333334433333332 334555555555554432 344455555555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 048794 426 CRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGC-FPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPR 501 (967)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (967)
++..+.++. +..+|......-...|+.+.|..+|+-..+... ......|...+..-...|.++.|..+++.+++.
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 555554432 444444444444445555555555555544311 111222333333333445555555555555544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-13 Score=134.73 Aligned_cols=369 Identities=13% Similarity=0.078 Sum_probs=247.9
Q ss_pred CHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhh
Q 048794 506 DVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVG 585 (967)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (967)
|...+...+-.+.+.|....|+..|.......|-....|..|...... .+.+..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~~~~----------------------- 216 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEILSI----------------------- 216 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHHHHH-----------------------
Confidence 444444445556778888888888888887777777777776654221 111100
Q ss_pred hhcccCCCcchHHHHHHHHhcCCCCCCcch--HHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 048794 586 GILTVAGPDKSILFAEKLVCNGICRDDSVV--VPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHA 663 (967)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 663 (967)
.-.+.+.+...+ .-+..++......+++..-+... ...|.+.+...-+..+.+.....+
T Consensus 217 ------------------l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l-~~~gf~~~~~i~~~~A~~~y~~rD 277 (559)
T KOG1155|consen 217 ------------------LVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERL-SSVGFPNSMYIKTQIAAASYNQRD 277 (559)
T ss_pred ------------------HHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCccHHHHHHHHHHHhhhhh
Confidence 011112111111 12333444444555555555444 445667777777777777778888
Q ss_pred hHHHHHHHHHHHHcCCCc--CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048794 664 TEMGLDLFTTMKNAGCAP--DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLF 741 (967)
Q Consensus 664 ~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 741 (967)
+++|+.+|+++.+..+-. |..+|..++ |.+..+ .+..-+-+.....+ +-.+.|+-.+++-|...++.+.|+.+|
T Consensus 278 fD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~-skLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 278 FDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK-SKLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh-HHHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHH
Confidence 999999999888874321 344444443 222221 12112222222222 334456667778888888899999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 048794 742 YNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP 821 (967)
Q Consensus 742 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 821 (967)
+++++-+ +....+|..++.-|..+.+...|+..|+++++.+ +.|...|..++.+|...+.+.-|+-.|+++.. .+|
T Consensus 354 kRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kP 429 (559)
T KOG1155|consen 354 KRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKP 429 (559)
T ss_pred HHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCC
Confidence 9998874 3445678888888999999999999999998864 34777999999999988888999999999888 567
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCH-H
Q 048794 822 D-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR----G-ISPDL-Y 894 (967)
Q Consensus 822 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~-~ 894 (967)
+ ...|..|+.+|.+.++.++|++.|+.++..+ +.+..++..|+..|-+.++.++|.++|++.++. | ..|+. .
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 5 6788899999999999999999999988765 456677888999999999999999998887742 2 22222 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 895 TYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 895 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
+..-|+.-..+++++++|..++.+++.-+|+--.
T Consensus 509 a~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ee 542 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYYATLVLKGETECEE 542 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHH
Confidence 2233666677889999999888888776554433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-16 Score=158.87 Aligned_cols=291 Identities=17% Similarity=0.105 Sum_probs=213.9
Q ss_pred hccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHhhHHHHHHHHHccCChHHH
Q 048794 625 QKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCA--PDISTYNLLLDGYGKSGRVEEL 702 (967)
Q Consensus 625 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 702 (967)
+=+..+|...|.++.... ....-+...++.+|.+.+++++|+++|+.+.+..+. .+...|...+..+ .+.-+-
T Consensus 332 ~y~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHH
Confidence 346677888887754332 223366677788888888999999998888876321 1344444444333 222222
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 703 LKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
--+-+.+.... +..+.+|-+++++|..+++.+.|++.|+++++.+ +...-+|..++.-+.....++.|.+.|+.++..
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22334444443 5567788899999999999999999999988863 334567777777778888889999999888864
Q ss_pred CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048794 783 GCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTIS 860 (967)
Q Consensus 783 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 860 (967)
.| +.-+|.-++..|.++++++.|+-.|+++++ +.|. ......++.++.+.|+.|+|+++++++...+ +.++-.
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~ 559 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLC 559 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchh
Confidence 33 334788888888899999999999999888 6776 4566778888888899999999999988754 335556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 861 YNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 861 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
-...+.++...+++++|...++++.+. .|.+..++..++.+|.+.|+.+.|+..+.=+.+++|.-..
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 666788888899999999999988874 5555688888889999999999999999988888887554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-15 Score=144.10 Aligned_cols=355 Identities=14% Similarity=0.102 Sum_probs=258.9
Q ss_pred cCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchH
Q 048794 537 LYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVV 616 (967)
Q Consensus 537 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (967)
...|+..++..+-.+.+.|..+.|++.+...+...| .+|..++.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-----~~W~AWle------------------------------- 203 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-----WFWSAWLE------------------------------- 203 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-----cchHHHHH-------------------------------
Confidence 445566666677778889999999999888775432 33433321
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhcCCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 048794 617 PIIKLFCRQKKALAAKDLFVKFTENLGVTS-TL-EMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYG 694 (967)
Q Consensus 617 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 694 (967)
-++...-.+....+. .+.+. +. ..-..+..++......+++..-.......|.+-+...-+..+.+..
T Consensus 204 --------L~~lit~~e~~~~l~--~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y 273 (559)
T KOG1155|consen 204 --------LSELITDIEILSILV--VGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASY 273 (559)
T ss_pred --------HHHhhchHHHHHHHH--hcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHh
Confidence 111111111111111 11121 11 1123345666777788999999999998887666666666677778
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHH
Q 048794 695 KSGRVEELLKLYEEMSFRGCKPNT---ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEE 771 (967)
Q Consensus 695 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 771 (967)
...++|+|+..|+++.+.+ +.+. .++..++ |.+..+ ..+..+.+-...-..-.+.+...+++-|.-.++.+.
T Consensus 274 ~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~L--Yv~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEK 348 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVL--YVKNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEK 348 (559)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHH--HHHhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHH
Confidence 8899999999999999874 3222 2333222 233222 223333333322123445577778888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 772 AKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 772 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
|+..|+++++.++ ....+|..++--|..+++...|++.|+++++ +.| |-.+|+.||.+|.-.+...=|+-+|+++.
T Consensus 349 Av~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 349 AVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 9999999999752 2456899999999999999999999999999 566 46899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCc-------CC
Q 048794 851 LNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCF-------VQ 923 (967)
Q Consensus 851 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-------~~ 923 (967)
... +.|+..|..|+++|.+.++.++|+.+|+++...| +.+..++..|+..+.+.++.++|.+++++.+. .+
T Consensus 426 ~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 426 ELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred hcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 853 4488899999999999999999999999999753 44678999999999999999999999999987 45
Q ss_pred CCcccc-ccceeeeccCCCcccccc
Q 048794 924 PSEFVS-SELQVIYAENPRATSLSH 947 (967)
Q Consensus 924 p~~~~~-~~l~~~~~~~g~~~~~~~ 947 (967)
|+-..+ .-|+..+.+.++|++|..
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHH
Confidence 544444 469999999999999765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-13 Score=130.95 Aligned_cols=427 Identities=16% Similarity=0.214 Sum_probs=262.8
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH---HHHHHHHcCCCCcHHHHHHHH
Q 048794 53 YSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMN---LLEEMERLGLRPNVYTFTICI 129 (967)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~ 129 (967)
++-|.|+. ++.+|..+.+.-+|+.|...|++.+...-..|++..+-.+.-+--.. .|-.|...| ..+..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc----
Confidence 34455543 45567788888888888888888888777777654433222111122 222333333 2222233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 048794 130 RILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIE 209 (967)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 209 (967)
+.|++.+ -+|+.. |.+..++..+|.++++.-..++|.+++++......+.+..+|+.++.+-+-.
T Consensus 191 ----K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---- 255 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS---- 255 (625)
T ss_pred ----ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----
Confidence 4455444 333333 3466778888888888888888888888887777777888888887765432
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCH-HHHHHH
Q 048794 210 VVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEE----AFSILDLMRGEGILPNLHTYNTLICGLLRLDRV-EEALEV 284 (967)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~ 284 (967)
...++..+|+...+.||..++|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++. ..+..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 226677777777788888888888888888887765 446677888888888888888888877776665 334455
Q ss_pred HHHHHHc----CC----CCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC----CCCC---cccHHHHHHHHHhcCCHH
Q 048794 285 FNNMEIL----GV----QPTAYTYILFIDYYGKSADPGKALETFEKMKIRG----IVPN---VVSCNASLYSLAETGRIG 349 (967)
Q Consensus 285 ~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~ 349 (967)
+.++... .+ +.|..-|...+..|....|...|..+..-..... +.|+ ...|..+....++....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554332 12 2244456666777777777777776655544321 1111 233455666667777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-C---H-------
Q 048794 350 EAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKAD-R---V------- 418 (967)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---~------- 418 (967)
.-...++.+..+-.-|+..+...++++..-.|.++-..++|..++..|...+......+...+++.. . +
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~ 495 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQV 495 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 7888888887776677777777888877777888888888877776653333333333333333322 0 0
Q ss_pred ---HHHHHHHH-------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCcHHHHHHHHHHHHh
Q 048794 419 ---DEAWEMFC-------RMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHG----CFPNTVTFNTLLHCLCK 484 (967)
Q Consensus 419 ---~~A~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 484 (967)
+-|..+++ +++. ........+.++-.+.+.|..++|.+++..+...+ ..|.......++.....
T Consensus 496 ~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 496 AFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 01111111 1222 22344556666666677777777777777775443 12333444455666666
Q ss_pred cCCHHHHHHHHHhhccCC
Q 048794 485 NEEVDLAMKMLYEMTPRN 502 (967)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~ 502 (967)
..+...|...++.+...+
T Consensus 574 ~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 677777777777776554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-13 Score=141.62 Aligned_cols=589 Identities=14% Similarity=0.095 Sum_probs=340.4
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 048794 108 NLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASS 187 (967)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 187 (967)
.++..+...|+.|+..+|..+|.-|+..|+.+.|- +|.-|.-+..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56777788889999999999999999999999888 8888877767778888899888888888776664
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHH
Q 048794 188 HQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMR-GEGILPNLHTYN 266 (967)
Q Consensus 188 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~ 266 (967)
.|.+.+|..|+.+|...||+.....+-+.+ ..+...+...|.-.....++-.+. ..+.-|+...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdL------------e~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDL------------ESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHH------------HHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 677788999999999999876622222212 223333445555544444444422 2233345443
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-ChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 048794 267 TLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSA-DPGKALETFEKMKIRGIVPNVVSCNASLYSLAET 345 (967)
Q Consensus 267 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (967)
.+......|-|+.+++++..+....... ++..+++-+.... .+++.........+ .|++.++..++.+....
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 3333445677787777776654332111 1222233333222 23333333333332 57899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048794 346 GRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMF 425 (967)
Q Consensus 346 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 425 (967)
|+.+.|..++..|++.|++.+..-|..++-+ .++...+..++..|.+.|+.|+..|+...+..+..+|....+
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~---- 290 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG---- 290 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc----
Confidence 9999999999999999999988888777654 788888889999999999999999998888877775542211
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC-----CH-----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048794 426 CRMKDMKLAPTVVTYNTLLSGLGKEG-----QV-----QKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKML 495 (967)
Q Consensus 426 ~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (967)
+.+. +....+++-+..-.-.| +. .-....+++..-.|......+|....+ ...+|.-++..++.
T Consensus 291 ----~e~s-q~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlv 364 (1088)
T KOG4318|consen 291 ----EEGS-QLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLV 364 (1088)
T ss_pred ----cccc-chhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHH
Confidence 2222 23333333333322233 11 111222222222343333344443333 23367777777776
Q ss_pred HhhccCCCC---CCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcC
Q 048794 496 YEMTPRNCW---PDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIG 572 (967)
Q Consensus 496 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 572 (967)
..+..--.. .+...+..+ +.++|.++... .....++ ..++... ..-.++...+.+....-.
T Consensus 365 g~l~npt~r~s~~~V~a~~~~------------lrqyFrr~e~~--~~~~i~~-~~qgls~-~l~se~tp~vsell~~lr 428 (1088)
T KOG4318|consen 365 GQLLNPTLRDSGQNVDAFGAL------------LRQYFRRIERH--ICSRIYY-AGQGLSL-NLNSEDTPRVSELLENLR 428 (1088)
T ss_pred hhhcCCccccCcchHHHHHHH------------HHHHHHHHHhh--HHHHHHH-HHHHHHh-hhchhhhHHHHHHHHHhC
Confidence 666432111 122223222 33444444331 1111111 1111111 111111111111111111
Q ss_pred CCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCC--C----CCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCC
Q 048794 573 TRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGI--C----RDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTS 646 (967)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 646 (967)
+....+...++-.. .+.+... + ....+...+...++..-+..++...-+++.. ..
T Consensus 429 kns~lr~lv~Lss~---------------Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~----~l 489 (1088)
T KOG4318|consen 429 KNSFLRQLVGLSST---------------ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED----LL 489 (1088)
T ss_pred cchHHHHHhhhhHH---------------HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 11111111111111 0111111 1 1122334445566666666666655554422 22
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--hhhHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGC--APDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPN--TISHN 722 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~ 722 (967)
.+..|..|+..++..+..+.|..++.+...... .-+..-+..+.+...+.+....+..++.++.+.-...+ ..++.
T Consensus 490 f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f 569 (1088)
T KOG4318|consen 490 FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILF 569 (1088)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHH
Confidence 347788999999999999999999888875421 22444566778888899999999999988876422212 34566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 048794 723 IVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD 781 (967)
Q Consensus 723 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 781 (967)
.+.+.....|+.+.-.+.++-+.+.|...+ ..+.....+.++.+.|+++.+...+
T Consensus 570 ~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~q 624 (1088)
T KOG4318|consen 570 PLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQ 624 (1088)
T ss_pred HHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHH
Confidence 777777888888887777777776654332 2334455566777777777766554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-14 Score=140.59 Aligned_cols=234 Identities=14% Similarity=0.072 Sum_probs=172.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHH
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLS 764 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 764 (967)
++...+..+.-.|+.-.|..-|+.+++..+.++. .+-.+..+|...++.++-...|..+...+ +.++.+|...+..+.
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHH
Confidence 3344444556678888888888888887533332 26677778888888888888888888874 455668888888888
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 843 (967)
-.+++++|+.-|++++...+ .+...|..++-+..+.+++++++..|++..+. -|+ +..|+..+.++.-++++++|.
T Consensus 406 lL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 88889999999998888632 24557777877777888889999999988874 565 678888888888888999999
Q ss_pred HHHHHHHHCCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHH
Q 048794 844 HYFEELKLNGLDAD---------TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 844 ~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 913 (967)
+.|+.+++. .|. +.+.-.++... =.+++..|..+++++++ +.|.. -++..|+......|+.++|+
T Consensus 483 k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 483 KQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHhh--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 999888863 222 22222222222 33788889999888885 66766 56678888888889999999
Q ss_pred HhhcCCCcCCCCccc
Q 048794 914 KLAGGNCFVQPSEFV 928 (967)
Q Consensus 914 ~~~~~~l~~~p~~~~ 928 (967)
.+|++++.+.-....
T Consensus 558 elFEksa~lArt~~E 572 (606)
T KOG0547|consen 558 ELFEKSAQLARTESE 572 (606)
T ss_pred HHHHHHHHHHHhHHH
Confidence 999888766554443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=140.51 Aligned_cols=295 Identities=16% Similarity=0.179 Sum_probs=239.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCC
Q 048794 660 EVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT------ISHNIVISGLVKSNS 733 (967)
Q Consensus 660 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~ 733 (967)
-.++.++|++.|.+|.+.. +.+..+..+|++.|.+.|..|.|+.+.+.+..+ ||. .+...++.-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 4578999999999999854 346777889999999999999999999999875 343 345677788999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHH
Q 048794 734 IDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV----IYNILINGFGKTGDVETACE 809 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~ 809 (967)
++.|.++|..+...+ .....+...++..|-...+|++|+.+-+++.+.+..+..+ .|+.++..+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999998863 4445578889999999999999999999998875554432 68888888888899999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048794 810 LFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG 888 (967)
Q Consensus 810 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 888 (967)
.+.++++. .|+ ..+-..++.+....|+++.|.+.|+.+.+.+...-+.+...|..+|.+.|+.++....+.++.+
T Consensus 202 ~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-- 277 (389)
T COG2956 202 LLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-- 277 (389)
T ss_pred HHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence 99999985 565 5667788999999999999999999999976555678899999999999999999999999986
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccceeee---ccCCCccc----ccchhhhhhcccccccc
Q 048794 889 ISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIY---AENPRATS----LSHKHCEYLASSCTFVC 961 (967)
Q Consensus 889 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~---~~~g~~~~----~~~~~~~~~~~~~~~~~ 961 (967)
..++.+....+........-.+.|..++.+.+...|+-...+.|-.+. .+.|++.+ ..+...+.++++|+++|
T Consensus 278 ~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 278 TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 455666666677666666667899999999999999988874333332 33444433 34455688999999999
Q ss_pred cc
Q 048794 962 PY 963 (967)
Q Consensus 962 ~~ 963 (967)
.+
T Consensus 358 ~~ 359 (389)
T COG2956 358 QN 359 (389)
T ss_pred cc
Confidence 75
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-12 Score=136.31 Aligned_cols=428 Identities=12% Similarity=0.024 Sum_probs=269.9
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhc--CCChhHHH
Q 048794 468 CFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWL--YPDHITLC 545 (967)
Q Consensus 468 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 545 (967)
+.-|..+|..+.-+....|+++.+.+.|++....-+. ....|..+...|...|.-..|..+++...... |+++..+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456777777777778888888888888888765432 56677778888888888888888888776655 66677766
Q ss_pred hHHHHHH-hcCChhHHHHHHHHHHhhcCCC-c----chhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHH
Q 048794 546 TLLPGVV-KDGQIEDAFRLAKCSIYQIGTR-A----ERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPII 619 (967)
Q Consensus 546 ~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 619 (967)
.....|. +.+..++++++..+++...+.. . ....+....-+......+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~------------------------- 452 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL------------------------- 452 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC-------------------------
Confidence 6666654 4688888888888777632110 0 0000000000000000000
Q ss_pred HHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCh
Q 048794 620 KLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRV 699 (967)
Q Consensus 620 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 699 (967)
-..+.-...++.+.++++++..+..+ .+...++--|...++.++|.+..++.++-+...+...|..++-.+...+++
T Consensus 453 -~seR~~~h~kslqale~av~~d~~dp--~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 453 -KSERDALHKKSLQALEEAVQFDPTDP--LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred -hHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 01112233456667777766554444 445555566778889999999999999886677889999999899999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCC------ChhcHHHHHHHHHcCCCHHH
Q 048794 700 EELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSG-G-FSP------TPCTYGPLIDGLSKSGRLEE 771 (967)
Q Consensus 700 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~------~~~~~~~l~~~~~~~g~~~~ 771 (967)
.+|+++.+.+.... +.|......-+..-..-++.++|++....++.- . ..+ .......-.......++..+
T Consensus 530 ~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 530 KEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTD 608 (799)
T ss_pred HHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccc
Confidence 99999998887652 223333333344444567777777766554432 0 000 00000000000111112222
Q ss_pred HHHHHHHHH--------HCC-----------CCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHH
Q 048794 772 AKKLFEEML--------DYG-----------CKPN------CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKS 825 (967)
Q Consensus 772 A~~~~~~~~--------~~~-----------~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~ 825 (967)
|.+....+. ..+ ..|+ ...|...+..+...++.++|...+.++.. +.|- ...
T Consensus 609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~ 686 (799)
T KOG4162|consen 609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASV 686 (799)
T ss_pred cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHH
Confidence 222222111 001 0122 11455666677788888888877777766 3454 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALS--LFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
|+..+..+...|++.+|.+.|..++..+ +........++.++.+.|+..-|.. ++..+++. -+.+.++|..++.++
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-DPLNHEAWYYLGEVF 764 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-CCCCHHHHHHHHHHH
Confidence 7777888888888888888888888743 2245567788888888887666666 88888864 233458888888888
Q ss_pred HhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 904 GRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 904 ~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.+.|+.++|...|.-++.+++.+|+-
T Consensus 765 k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHccchHHHHHHHHHHHhhccCCCcc
Confidence 88888888888888888888888873
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=163.26 Aligned_cols=286 Identities=13% Similarity=0.052 Sum_probs=229.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHH
Q 048794 660 EVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT----ISHNIVISGLVKSNSID 735 (967)
Q Consensus 660 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 735 (967)
..-+..+|+..|......- .-+..+...++.+|...+++++|.++|+.+.+. .|-. ..+...+. +.. -+
T Consensus 331 s~y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LW---HLq-~~ 403 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLW---HLQ-DE 403 (638)
T ss_pred HHHHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHH---HHH-hh
Confidence 3446789999999855542 334577788999999999999999999999876 3322 23333222 222 23
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048794 736 KAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQM 814 (967)
Q Consensus 736 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 814 (967)
-++.++.+-+....+..+.+|..++++|.-+++.+.|++.|+++++. .| ...+|..++--+.....+++|...|+.+
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 34444444444335667789999999999999999999999999985 45 5668888888888899999999999999
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 815 IKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 815 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
+. +.|. -.+|+.++.+|.+.++++.|.-.|+++++.+ +.+.+..+.++.++.+.|+.++|+++++++... -+.|+
T Consensus 482 l~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-d~kn~ 557 (638)
T KOG1126|consen 482 LG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-DPKNP 557 (638)
T ss_pred hc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-CCCCc
Confidence 98 5776 4799999999999999999999999999854 336778889999999999999999999999853 23455
Q ss_pred HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchhhhhhccccc
Q 048794 894 YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCEYLASSCT 958 (967)
Q Consensus 894 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 958 (967)
-.-...+.+++..+++++|...++++-++.|++... +.+|.+|-+.|+.+.|..+.-=..+.||+
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 677788999999999999999999999999999998 69999999999999988844344444444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.3e-18 Score=171.86 Aligned_cols=254 Identities=17% Similarity=0.129 Sum_probs=95.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRG-CKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS 766 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 766 (967)
.++..+.+.|++++|++++.+..... .+.+...|..++......++++.|+..++++...+. ..+..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 44566666677777777775544332 233444455555555666777777777777766532 233445555555 567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGG-IRPDLKSYSVLVDCLCMVGRVDDALHY 845 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 845 (967)
+++++|.+++++..+. .++...+..++..+...++++++..+++++.... .+++...|..++.++.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776654 3455556666667777777777777777766531 233456667777777777888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 846 FEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
++++++.. +.+......+++++...|+.+++.++++...+. .+.++..+..++.++...|++++|..++++++..+|+
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 88877642 335666777777777788777777777777653 3555667777777888888888888888888877888
Q ss_pred cccc-ccceeeeccCCCcccccc
Q 048794 926 EFVS-SELQVIYAENPRATSLSH 947 (967)
Q Consensus 926 ~~~~-~~l~~~~~~~g~~~~~~~ 947 (967)
||.+ .++|.++...|+.++|+.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp -HHHHHHHHHHHT----------
T ss_pred ccccccccccccccccccccccc
Confidence 8887 578888888888877776
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.2e-10 Score=118.14 Aligned_cols=817 Identities=14% Similarity=0.139 Sum_probs=385.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 048794 53 YSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRIL 132 (967)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (967)
..|-.-...+..+|+|++|-.+--...+ |+--+..+.+..-..=...|+..-.+..|..+...| +.|...-.-+.+.-
T Consensus 361 ~Lfv~rFneLfaqG~Y~eAAkvAAsSPr-gILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpV 438 (1666)
T KOG0985|consen 361 NLFVRRFNELFAQGEYEEAAKVAASSPR-GILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPV 438 (1666)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHhCch-hhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 3444445556678888888777655433 344555566655555556777777778888887777 55655555566666
Q ss_pred HhcCCHHHHHHHHHHHH-----hCC--CCC-C----HHH------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 048794 133 GRAGKIDEAYRILKRMD-----DEG--CGP-D----VVT------YTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVT 194 (967)
Q Consensus 133 ~~~g~~~~A~~~~~~~~-----~~~--~~~-~----~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 194 (967)
..+|+.+-..+++.+=. +.| ++| + ..+ .+.++.++...|.++++.-... +.|..||-.
T Consensus 439 L~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~k---KvGyTPdym- 514 (1666)
T KOG0985|consen 439 LQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAK---KVGYTPDYM- 514 (1666)
T ss_pred HhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHH---HcCCCccHH-
Confidence 66777666666664321 111 111 1 111 2345555566666665554433 345667643
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHh
Q 048794 195 YITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTY-NTLICGLL 273 (967)
Q Consensus 195 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~ 273 (967)
.+++...+ -+++.+.++...+.+.. +....+..+...+......+.+...+-..++.. .|+.... ..++..-.
T Consensus 515 --flLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL 588 (1666)
T KOG0985|consen 515 --FLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNL 588 (1666)
T ss_pred --HHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHh
Confidence 34444444 56778888777776642 234445666677777777777777666665543 2333222 22222211
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCCCcccHHHHHHHHHhcCCHHHH
Q 048794 274 RLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIR--GIVPNVVSCNASLYSLAETGRIGEA 351 (967)
Q Consensus 274 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 351 (967)
. .|.++.+.+...+.- +..-...+...|.+.|-...|++.+.++..- .+..+...--..+..+...-.++++
T Consensus 589 -~----~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s 662 (1666)
T KOG0985|consen 589 -V----HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDS 662 (1666)
T ss_pred -c----cchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHH
Confidence 1 122222222222211 1112455666677777777777666554221 0000000011123334444556677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----------CCCCChhhHHHHHHHHHhcCCHHH
Q 048794 352 KTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVEN-----------GCEPDVIVMNTLIDTLYKADRVDE 420 (967)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~ 420 (967)
.+.++.|...++..+..+...+..-|...-..+..+++|+..... ++.-|+.+.-..|.+.++.|++.+
T Consensus 663 ~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikE 742 (1666)
T KOG0985|consen 663 LECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKE 742 (1666)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHH
Confidence 777777776655555555444444444433344444444443221 123444455556677777777766
Q ss_pred HHHHHHHH------------HhCCC---------------CCCHHHH------HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048794 421 AWEMFCRM------------KDMKL---------------APTVVTY------NTLLSGLGKEGQVQKAIELFEGMTDHG 467 (967)
Q Consensus 421 A~~~~~~~------------~~~~~---------------~~~~~~~------~~l~~~~~~~g~~~~a~~~~~~~~~~~ 467 (967)
..++.++- .+.++ .+|...| ...|..|.+.=+....-.+...+.+.+
T Consensus 743 vERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~d 822 (1666)
T KOG0985|consen 743 VERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVD 822 (1666)
T ss_pred HHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCC
Confidence 66654431 11111 1111111 112222222222222222222222221
Q ss_pred CCCcHHHHHHHH-------------HHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHH-H---HHH
Q 048794 468 CFPNTVTFNTLL-------------HCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDA-I---WFF 530 (967)
Q Consensus 468 ~~~~~~~~~~l~-------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~---~~~ 530 (967)
++ ......|+ .-.-+.++...-...++..+..|.. ++.++++++..|..+++-.+- . ..|
T Consensus 823 C~--E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yY 899 (1666)
T KOG0985|consen 823 CS--EDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYY 899 (1666)
T ss_pred Cc--HHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcc
Confidence 11 11111111 1112223333334445555555533 667777777766654433221 1 011
Q ss_pred HHHH------hhcC--------------------CChhHHHhHHHHHHhcCChhHHH-----------HHHHHHHhh-cC
Q 048794 531 HQMR------KWLY--------------------PDHITLCTLLPGVVKDGQIEDAF-----------RLAKCSIYQ-IG 572 (967)
Q Consensus 531 ~~~~------~~~~--------------------~~~~~~~~l~~~~~~~~~~~~A~-----------~~~~~~~~~-~~ 572 (967)
+... +..| +....+...++...+..+.+.=- .++.+.+.- -+
T Consensus 900 Ds~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 900 DSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred hhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCC
Confidence 1110 0011 00111222222222222221111 111111111 11
Q ss_pred CCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCC-cchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHH
Q 048794 573 TRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDD-SVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMY 651 (967)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 651 (967)
...+++...-.+..++..+-|.+.+.++++++....+=+. ...-.+.-.-....+...+.++.+++-. . ..
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdn-y--Da----- 1051 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDN-Y--DA----- 1051 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhcc-C--Cc-----
Confidence 2222333333344444444444444444433322211111 1111111111112222233333333310 0 00
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 048794 652 NYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS 731 (967)
Q Consensus 652 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 731 (967)
-.++......+-+++|..+|++.- .+..+...|+. .-+..|.|.++-++.. .+..|..+..+..+.
T Consensus 1052 ~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1052 PDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhc
Confidence 011222233344445554444332 12222222222 2244455544433321 234677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELF 811 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 811 (967)
|...+|++.|-+ ..++..|..+++...+.|.|++-.+++..+.+...+|. +-..++.+|++.++..+-.++
T Consensus 1118 ~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~f- 1188 (1666)
T KOG0985|consen 1118 GLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEF- 1188 (1666)
T ss_pred CchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHH-
Confidence 777777776654 23455677777777777888877777777766543333 333556667777776653332
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048794 812 KQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP 891 (967)
Q Consensus 812 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 891 (967)
+. -|+......++.-|...|.++.|.-+|..+ ..|..|+..+...|+++.|.+.-+++-
T Consensus 1189 ---i~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1189 ---IA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred ---hc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 22 466666677777777777777777666532 236667777788888888777766653
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccceeeeccCCCcccc
Q 048794 892 DLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIYAENPRATSL 945 (967)
Q Consensus 892 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~~~~g~~~~~ 945 (967)
+..+|.....++...+.+.-|.-.=-.++ ...+... .|.++|...|=|+|.
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~ii-vhadeLe--eli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNII-VHADELE--ELIEYYQDRGYFEEL 1298 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceEE-EehHhHH--HHHHHHHhcCcHHHH
Confidence 33566666666666666655532211111 1111111 477777777777763
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-12 Score=124.17 Aligned_cols=445 Identities=15% Similarity=0.162 Sum_probs=239.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHH---HHHHHHHHHHcCCCCCHhhHHH
Q 048794 16 DLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCRE---ALAVYKRVVSEGIKPSLKTYSA 92 (967)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~~~~~~~~~ 92 (967)
++.+-+.|++- ...|.+.++--+|+.|+..|...++..-..|+..-...+...- -.+.|-.|.+.| ..+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 67777777775 5678889999999999999887777666666555433332211 112222332222 1222222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048794 93 LMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGR 172 (967)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 172 (967)
+.|+..+ ++-+.. |-+..++..+|..+++....+.|..++++.....++.+..++|.+|.+..-.
T Consensus 191 ------K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred ------ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 2222222 222221 2334455666666666666666666666655554455666666665543322
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHH-HH
Q 048794 173 LDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEV----VKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEE-AF 247 (967)
Q Consensus 173 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~ 247 (967)
...++..+|......||..|++.++.+.++.|+++. +.+++.+|.+-|+.|....|..++..+++.++..+ +.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 114556666655566666666666666666665543 33445555555666666666666666665555433 33
Q ss_pred HHHHHHHh----CCCC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHhhcCC
Q 048794 248 SILDLMRG----EGIL----PNLHTYNTLICGLLRLDRVEEALEVFNNMEILG----VQPTA---YTYILFIDYYGKSAD 312 (967)
Q Consensus 248 ~~~~~~~~----~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~ 312 (967)
.++.++.+ +..+ .+...|...+..|.+..+.+-|.++..-+.... +.|+. .-|..+....+....
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 33333322 1111 123334445555555555555555544443221 12221 123334444455555
Q ss_pred hhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-Ch---h----
Q 048794 313 PGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVG-QV---D---- 384 (967)
Q Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~---- 384 (967)
.+.....++.|+..-.-|+..+...++.+....|.++-.-++|..++..|.........-++..+++.. ++ +
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 566666666666655555666666666666666666666666666665554333333333333333322 11 0
Q ss_pred ------HHHHH-------HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C---CCCHHHHHHHHHHH
Q 048794 385 ------EAVTL-------LSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMK-L---APTVVTYNTLLSGL 447 (967)
Q Consensus 385 ------~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~---~~~~~~~~~l~~~~ 447 (967)
-|..+ -..+.+ ........+.++-.+.+.|+.++|++++..+...+ - .|.......+++.-
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 01111 112222 24455677888888899999999999999885432 2 23444444666667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 048794 448 GKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLC 483 (967)
Q Consensus 448 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 483 (967)
...++...|..+++-|...+.+.-...-..+...|.
T Consensus 572 ~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred HhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcC
Confidence 778899999999999877654332323333444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-13 Score=133.88 Aligned_cols=225 Identities=14% Similarity=0.091 Sum_probs=184.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 048794 655 IHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSI 734 (967)
Q Consensus 655 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 734 (967)
+.-+.-.|+.-.|...|+..++..+.++. .|..++.+|...++..+....|+.+...+ +.++.+|..-++.+.-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence 34455789999999999999987544333 37788889999999999999999999987 56888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048794 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQM 814 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 814 (967)
++|..-|+++++.. +.....|-.+.-+..+.++++++...|+++.+. ++..+.+|+-.+.++..++++++|++.|+.+
T Consensus 411 e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 411 EEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99999999999863 334456777777778889999999999999986 4556779999999999999999999999999
Q ss_pred HhCCCCCC-------HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 815 IKGGIRPD-------LKSYSVLVDCLC-MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 815 ~~~~~~p~-------~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
++ +.|. ...+.+-+.+.. -.+++..|.+++.++++.+ +....++..|+..-..+|+.++|+++|++...
T Consensus 489 i~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 489 IE--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred Hh--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 98 4554 223333333222 3478999999999999854 33566899999999999999999999999873
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-10 Score=120.14 Aligned_cols=767 Identities=13% Similarity=0.137 Sum_probs=400.9
Q ss_pred cCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHH
Q 048794 12 IINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYS 91 (967)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 91 (967)
+++.--..|..-|+.+...|++++|-.+-....+. +-.++.+.+.+=.+-...|+..-.+..|..+...| +.|..--.
T Consensus 355 nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPrg-ILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETL 432 (1666)
T KOG0985|consen 355 NLAGAENLFVRRFNELFAQGEYEEAAKVAASSPRG-ILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETL 432 (1666)
T ss_pred CCccHHHHHHHHHHHHHhCccHHHHHHHHHhCchh-hhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHH
Confidence 44444555666677777778877776665555442 23366777777666677788877888888888877 44444333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH-----HcC--CCC-c----HH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048794 92 ALMVAAGKRRNIKTVMNLLEEME-----RLG--LRP-N----VY------TFTICIRILGRAGKIDEAYRILKRMDDEGC 153 (967)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~-----~~~--~~~-~----~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 153 (967)
-+.+--..+|+.+...+.+.+=+ +.| +.| | .. +..-.+.++..+|+++++.-...+ .|.
T Consensus 433 EL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kK---vGy 509 (1666)
T KOG0985|consen 433 ELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKK---VGY 509 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHH---cCC
Confidence 44444455565555555444321 111 111 1 01 112345566666777666655443 244
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHhhHH-------------HHHHHHHccCCHHHH--------
Q 048794 154 GPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSH-QPDQVTYI-------------TLLDKFSDCGNIEVV-------- 211 (967)
Q Consensus 154 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~-------------~ll~~~~~~~~~~~a-------- 211 (967)
.|+. -.+++...+ -+++++.++...+.+... ..|..... +++-...+...++..
T Consensus 510 TPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE 585 (1666)
T KOG0985|consen 510 TPDY---MFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLE 585 (1666)
T ss_pred CccH---HHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHH
Confidence 5554 445555554 466777777766665322 11211111 111111121222211
Q ss_pred ------HHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHhcCCCHHH
Q 048794 212 ------KEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYN-----TLICGLLRLDRVEE 280 (967)
Q Consensus 212 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~ll~~~~~~~~~~~ 280 (967)
-++-+.++.++.. +..-+..+...|.+.|-...|++.+.++..- + ...+.. ..+..+...-.++.
T Consensus 586 ~NL~~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~ 661 (1666)
T KOG0985|consen 586 MNLVHAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVED 661 (1666)
T ss_pred HHhccchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHH
Confidence 1112222222222 1122566778888999999999888766431 0 011111 12345555667899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-----------CCCCCcccHHHHHHHHHhcCCHH
Q 048794 281 ALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIR-----------GIVPNVVSCNASLYSLAETGRIG 349 (967)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~ 349 (967)
+.+.+..|...+++.+..+...+..-|...-..+..+++|+..... ++..|+...-..+.+.++.|++.
T Consensus 662 s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~Qik 741 (1666)
T KOG0985|consen 662 SLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIK 741 (1666)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHH
Confidence 9999999999888888888877777777777777778888776543 23456666677788888999888
Q ss_pred HHHHHHHHH------------HHCCC---CC-----CHHHHHHHHHHHHHcCChhHHHHHH-------------HHHHHC
Q 048794 350 EAKTIFNGL------------KNSGF---AP-----DSVTYNMMMKCYSKVGQVDEAVTLL-------------SEMVEN 396 (967)
Q Consensus 350 ~a~~~~~~~------------~~~~~---~~-----~~~~~~~l~~~~~~~~~~~~a~~~~-------------~~~~~~ 396 (967)
+..++-++- ++... .| |...|..=+-.|.-.++...-++++ ..+...
T Consensus 742 EvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~ 821 (1666)
T KOG0985|consen 742 EVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV 821 (1666)
T ss_pred HHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC
Confidence 877664321 11110 11 1111111112222222222222222 222111
Q ss_pred CCCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048794 397 GCEPD-----------VIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTD 465 (967)
Q Consensus 397 ~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 465 (967)
+++-+ ......|..-.-+.++..--..+++.....|.. +..+++++...|..+++-.+-. ..
T Consensus 822 dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~f------Lk 894 (1666)
T KOG0985|consen 822 DCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERF------LK 894 (1666)
T ss_pred CCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHh------cc
Confidence 11000 000111222233344444444455555555543 6667777776666544432211 11
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcc----CCCCCCHHHHHHHHHHHhhcCcHhHH-----------HHHH
Q 048794 466 HGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTP----RNCWPDVLTYNTIIYGLVKEQRVKDA-----------IWFF 530 (967)
Q Consensus 466 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A-----------~~~~ 530 (967)
.+..-|.. .+.-||...+...|.-.+++-.- -++......+......+....+.+-- +.+.
T Consensus 895 eN~yYDs~----vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLi 970 (1666)
T KOG0985|consen 895 ENPYYDSK----VVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLI 970 (1666)
T ss_pred cCCcchhh----HHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHH
Confidence 10000111 11112222221111100000000 00001111222222222222222211 2333
Q ss_pred HHHHhh---cCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcC
Q 048794 531 HQMRKW---LYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNG 607 (967)
Q Consensus 531 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (967)
++.... ...|+........++...+...+-++++++.+..++.-.+-..++.++-....+..+.....+...+-.
T Consensus 971 DqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdn-- 1048 (1666)
T KOG0985|consen 971 DQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDN-- 1048 (1666)
T ss_pred HHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhcc--
Confidence 443332 224555566677888889999999999999998887766666666665433333333332233222211
Q ss_pred CCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH
Q 048794 608 ICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYN 687 (967)
Q Consensus 608 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 687 (967)
.-...++..-...+-+++|...|.++ ..+..+...++. .-+..+.|.++-++.. ....|.
T Consensus 1049 -----yDa~~ia~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWs 1108 (1666)
T KOG0985|consen 1049 -----YDAPDIAEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWS 1108 (1666)
T ss_pred -----CCchhHHHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHH
Confidence 11223455666677788888888776 334444444443 3345666665554433 345677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG 767 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 767 (967)
.++.+-.+.|...+|++-|-++ .|+..+..++....+.|.+++-..++..+.+....|. +-..++-+|.+.+
T Consensus 1109 qlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhc
Confidence 7888888888888888777553 2556677788888888888888888777776643333 3455677788877
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 768 RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFE 847 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 847 (967)
+..+-..+ +. .|+.......+.-+...|.++.|.-+|....+ |..|+..+...|++..|.....
T Consensus 1181 rl~elE~f----i~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1181 RLTELEEF----IA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred hHHHHHHH----hc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHhh
Confidence 76654332 32 35555556666666666677666666654432 4555555555566665555544
Q ss_pred H
Q 048794 848 E 848 (967)
Q Consensus 848 ~ 848 (967)
+
T Consensus 1245 K 1245 (1666)
T KOG0985|consen 1245 K 1245 (1666)
T ss_pred h
Confidence 3
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-16 Score=160.24 Aligned_cols=261 Identities=19% Similarity=0.196 Sum_probs=101.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 048794 653 YLIHGLLEVHATEMGLDLFTTMKNAG-CAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS 731 (967)
Q Consensus 653 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 731 (967)
.++..+...|++++|++++++..... .+.+...|..++......+++++|+..|+++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44666667777777777775544332 23345556666777777788888888888887664 2244455555555 677
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYG-CKPNCVIYNILINGFGKTGDVETACEL 810 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 810 (967)
+++++|.+++....+.. +++..+...+..+.+.|+++++..+++++.... .+.+...|..++.++.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888777766542 344456667777888888888888888876532 234666788888888888888888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 811 FKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 811 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
|+++++ ..|+ ......++..+...|+.+++.+.++...... +.++..+..++.++...|++++|...++++.+. .
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 888888 4675 5677788888888888888777777766532 345556777888888888888888888888764 4
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 890 SPDLYTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 890 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
|.|+.+...++.++...|+.++|..+.++++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 55678888888888888888888888887764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-09 Score=109.87 Aligned_cols=229 Identities=17% Similarity=0.141 Sum_probs=146.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh-hhHHHHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT-ISHNIVI 725 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 725 (967)
+...|...+..-...|-++....+|+++++..+. +.......+..+..+..++++.+.|++-+.....|+. ..|+..+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 4456666677777788888888899998876432 3333334444566677788999998887766544543 3455444
Q ss_pred HHHH---hcCCHHHHHHHHHHHHhCCCCCCh--hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 048794 726 SGLV---KSNSIDKAMDLFYNLVSGGFSPTP--CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC--VIYNILINGF 798 (967)
Q Consensus 726 ~~~~---~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~ 798 (967)
.-.. .....+.|.++|+++++. -+|.. ..|...+..-.+.|-...|+.+|+++... +++.. ..|+..+.--
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~-Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDG-CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence 4332 335688999999999984 34432 23444455556678888999999998764 33222 2566555433
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCH
Q 048794 799 GKTGDVETACELFKQMIKGGIRPDLKS---YSVLVDCLCMVGRVDDALHYFEELKLN-GLDADTISYNFMINGLGRSGRI 874 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 874 (967)
...=-......+|+++++. -|+..+ ....+..-.+.|..+.|..+|.-..+. +.+.+...|...-..-.+.|+-
T Consensus 633 ae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 2222234457788888883 666433 334466677889999999998766543 2233667788887778899985
Q ss_pred HHHHHH
Q 048794 875 EEALSL 880 (967)
Q Consensus 875 ~~A~~~ 880 (967)
+.-.++
T Consensus 711 dT~keM 716 (835)
T KOG2047|consen 711 DTYKEM 716 (835)
T ss_pred HHHHHH
Confidence 443333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-09 Score=107.77 Aligned_cols=658 Identities=13% Similarity=0.117 Sum_probs=317.5
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH---Hc-----cCCHHHHHHHHH
Q 048794 40 LEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAA---GK-----RRNIKTVMNLLE 111 (967)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~-----~~~~~~a~~~~~ 111 (967)
|+.=+-+++. +.-+|-..|...... -.+...-+|+++.+. ++-|...|...+..= .+ ...+......|+
T Consensus 16 fEeEilRnp~-svk~W~RYIe~k~~s-p~k~~~~lYERal~~-lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~e 92 (835)
T KOG2047|consen 16 FEEEILRNPF-SVKCWLRYIEHKAGS-PDKQRNLLYERALKE-LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFE 92 (835)
T ss_pred hHHHHHcCch-hHHHHHHHHHHHccC-ChHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Confidence 4443344443 777887777665442 234455667777664 455555655555221 11 112333333333
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 048794 112 EMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDE-GCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQP 190 (967)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 190 (967)
...-.-. .-...|...+..+.++|++..-+..|++.... .+.....+|...+......+-++-+..+|+...+. .|
T Consensus 93 r~lv~mH-kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P 169 (835)
T KOG2047|consen 93 RCLVFMH-KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP 169 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH
Confidence 3332110 12345666677777777777777777766543 12223345666666666677777777777776653 22
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC------CCCcHhHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCC
Q 048794 191 DQVTYITLLDKFSDCGNIEVVKEFWSQMVADG------YAADVVTYTIFVDALCKVGNVEE---AFSILDLMRGEGILPN 261 (967)
Q Consensus 191 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~ 261 (967)
..-.-.+..+...+++++|.+.+..++... .+.+-..|..+....++..+.-. ...++..+...-..--
T Consensus 170 --~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~ 247 (835)
T KOG2047|consen 170 --EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL 247 (835)
T ss_pred --HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH
Confidence 224445555666677777766666665331 12233444444444444333221 2222222222110011
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCcccHHHHHH
Q 048794 262 LHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIR-GIVPNVVSCNASLY 340 (967)
Q Consensus 262 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 340 (967)
...|..|..-|.+.|.++.|.++|++.... .....-|..+.++|+.......+..+= -..+. +..-+..
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~------- 317 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV------- 317 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------
Confidence 223445555555555555555555554432 222333333333333321111111000 00000 0000000
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC------hh
Q 048794 341 SLAETGRIGEAKTIFNGLKNS-----------GFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPD------VI 403 (967)
Q Consensus 341 ~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~ 403 (967)
+++-...-|+.+... ..+.++..|..-+.. ..|+..+-...+.++++. +.|. ..
T Consensus 318 ------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~ 388 (835)
T KOG2047|consen 318 ------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGT 388 (835)
T ss_pred ------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhh
Confidence 011111111111111 112222333322221 123344444444444432 1111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 048794 404 VMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPT---VVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480 (967)
Q Consensus 404 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (967)
.|..+...|-..|+.+.|+.+|++......+.- ..+|..-...-.++.+++.|+++.++.... |.... .
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~ 460 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----L 460 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----h
Confidence 344444445555555555555555444321100 122333333333444455555544444321 11111 1
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHH
Q 048794 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDA 560 (967)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 560 (967)
.+...+..-.+. + ..+..+|...+..-...|-++....+|+++.+.....+......+..+..+.-++++
T Consensus 461 ~~yd~~~pvQ~r--l--------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 461 EYYDNSEPVQAR--L--------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEES 530 (835)
T ss_pred hhhcCCCcHHHH--H--------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHH
Confidence 122222211111 0 124556777777777889999999999999988777788877778788888899999
Q ss_pred HHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHH
Q 048794 561 FRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTE 640 (967)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 640 (967)
++.|++.+...+-+.....|.. ++.++++
T Consensus 531 Fk~YErgI~LFk~p~v~diW~t---------------------------------------------------YLtkfi~ 559 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNT---------------------------------------------------YLTKFIK 559 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHH---------------------------------------------------HHHHHHH
Confidence 9999887665543333322221 1222211
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh-hHHHH-HHHHHccCChHHHHHHHHHHHhCCCCCCh
Q 048794 641 NLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIS-TYNLL-LDGYGKSGRVEELLKLYEEMSFRGCKPNT 718 (967)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 718 (967)
. ......+.|..+|++.++ |.+|... ++..+ +..-.+.|-...|+.+|+++... +++..
T Consensus 560 r-----------------ygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~ 620 (835)
T KOG2047|consen 560 R-----------------YGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQ 620 (835)
T ss_pred H-----------------hcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHH
Confidence 1 123357888888888887 4344332 22222 22334558888899999887654 23222
Q ss_pred --hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hcHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 048794 719 --ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP-CTYGPLIDGLSKSGRLEEAKKLFEEMLDYG-CKPNCVIYNIL 794 (967)
Q Consensus 719 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l 794 (967)
..|+..+.-....=-......+|+++++.-++... ......++.-.+.|..+.|..+|.-..+.. +..+...|.+.
T Consensus 621 ~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~tw 700 (835)
T KOG2047|consen 621 RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTW 700 (835)
T ss_pred HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHH
Confidence 12333332222222334456777777776222222 122334566677888888888888776642 22345567777
Q ss_pred HHHHhccCCHHHHHHHHHHHHh
Q 048794 795 INGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
-..-.++|| .+.+++|++
T Consensus 701 k~FEvrHGn----edT~keMLR 718 (835)
T KOG2047|consen 701 KEFEVRHGN----EDTYKEMLR 718 (835)
T ss_pred HHHHHhcCC----HHHHHHHHH
Confidence 777778888 345555554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-12 Score=128.68 Aligned_cols=493 Identities=13% Similarity=0.044 Sum_probs=277.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 048794 156 DVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVD 235 (967)
Q Consensus 156 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 235 (967)
+..-+..+++-+....++..|.-+-+++-..+..| .....+..++.-.|++++|..+...-.-. ..+.........
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 44556666666666777777777777776554333 33344566666667777777766543221 236666667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCh
Q 048794 236 ALCKVGNVEEAFSILDLMRGEGILPNLHTYNTL--ICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADP 313 (967)
Q Consensus 236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (967)
.+.+..++++|..++..... ..++..+..- .......+.. ++ .++......+..=...|....+.
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~~~~l~~n~~~--------~~--~~~~~essic~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDAANTLELNSAG--------ED--LMINLESSICYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhhhceeccCccc--------cc--ccccchhceeeeeeehhhhhccH
Confidence 77788888888877763311 0011111000 0000000000 00 00011111111112234444555
Q ss_pred hhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCChhHHHHH
Q 048794 314 GKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGF----APDSVTYNMMMKCYSKVGQVDEAVTL 389 (967)
Q Consensus 314 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~ 389 (967)
+.|...+.+.... |...+..+.. +..... -.+.+.|..+..... ..+......+.........-+.....
T Consensus 158 ~~ar~~Y~~Al~~----D~~c~Ea~~~-lvs~~m-lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r 231 (611)
T KOG1173|consen 158 EEARDKYKEALLA----DAKCFEAFEK-LVSAHM-LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTR 231 (611)
T ss_pred HHHHHHHHHHHhc----chhhHHHHHH-HHHHHh-cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence 6666666555543 3322222211 111110 011111111111100 11111111111111000000000000
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 390 LSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCF 469 (967)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 469 (967)
-....-.+...+........+-+...+++.+..++.+.+.+..+ +....+..-|.++...|+..+-..+-.++++. .|
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP 309 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YP 309 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CC
Confidence 00000012234555666677778888999999999998887643 45555666666778888888888887888875 45
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHH
Q 048794 470 PNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLP 549 (967)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 549 (967)
..+.+|.++..-|...|++.+|++.|.+....+. .-...|-.++..+.-.|.-+.|+..|..+.+..+.......-++.
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM 388 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 6778888888888888999999999999887652 245678888888999999999999999999988888888888888
Q ss_pred HHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHH
Q 048794 550 GVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKAL 629 (967)
Q Consensus 550 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 629 (967)
-|.+.++++.|-+.+.+++... |.|+-+...++-+....+.+.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~-------------------------------------P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIA-------------------------------------PSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-------------------------------------CCcchhhhhhhheeehHhhhH
Confidence 8999999999999888877654 455556666666666677777
Q ss_pred HHHHHHHHHHHhcC---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHH
Q 048794 630 AAKDLFVKFTENLG---VTS--TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLK 704 (967)
Q Consensus 630 ~a~~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 704 (967)
+|..+|...+.... ... -..+++.|+..+.+.+.+++|+..|++.+... +.+..++..++-+|...|+++.|++
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHH
Confidence 77777766541111 011 12334555555555555555555555555443 2345555555555555555555555
Q ss_pred HHHHHHhC
Q 048794 705 LYEEMSFR 712 (967)
Q Consensus 705 ~~~~~~~~ 712 (967)
.|++++..
T Consensus 511 ~fhKaL~l 518 (611)
T KOG1173|consen 511 HFHKALAL 518 (611)
T ss_pred HHHHHHhc
Confidence 55555543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-13 Score=145.38 Aligned_cols=293 Identities=11% Similarity=-0.021 Sum_probs=141.1
Q ss_pred HHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChH
Q 048794 621 LFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVE 700 (967)
Q Consensus 621 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 700 (967)
.....|+++.|.+.+.+..+.. +.....+...+......|+++.|.+.+.+..+..+.+........+..+...|+++
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 3345566666666665543321 11222233334455556666666666666554422222222233355555666666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHH---HHcCCCHHHHHHHHH
Q 048794 701 ELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDG---LSKSGRLEEAKKLFE 777 (967)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~ 777 (967)
+|...++.+.+.. |.+...+..++..+...|++++|.+.+....+.+..+..........+ ....+..+++.+.+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6666666666553 224445555566666666666666666666655322211110000011 111222222233444
Q ss_pred HHHHCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 778 EMLDYGCK---PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKS---YSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 778 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
++.+..+. .+...+..++..+...|++++|++.+++.++. .|+... ...........++.+++.+.+++.++
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 44332110 24455555666666666666666666666653 333221 01111112223455556666655554
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 852 NGLDADT--ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 852 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
.. +.++ .....+++++.+.|++++|.+.++.+......|++..+..++.++.+.|+.++|.++++++
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 2233 4445566666666666666666663222224555555556666666666666666666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-10 Score=118.89 Aligned_cols=548 Identities=11% Similarity=-0.031 Sum_probs=323.6
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 382 QVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFE 461 (967)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 461 (967)
+...+...|-+..+.. +.-...|..|...|....+...|.+.|+.+.+.+.. +..........|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 4566666666666543 222457888999888888999999999999887643 77888889999999999999998844
Q ss_pred HHHhCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCC
Q 048794 462 GMTDHGCFPNTV--TFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYP 539 (967)
Q Consensus 462 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 539 (967)
...+.. +.-.. .|....-.|.+.++...|+.-|+.....+ +.|...|..++.+|..+|++..|.++|.++....|.
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 333321 11112 22223345778889999999999998876 348889999999999999999999999999988888
Q ss_pred ChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcc-----hhhHhhhhhhhcccCCCcchHHHHHHHHhcCCC----C
Q 048794 540 DHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAE-----RQFWQDLVGGILTVAGPDKSILFAEKLVCNGIC----R 610 (967)
Q Consensus 540 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 610 (967)
+...-...+......|.+.+|+..+...+........ .+.+..........+...++..+.++.+..-.. .
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 8888888888888899999999988877654321111 111111111112222222223333322211100 0
Q ss_pred --CC-cchHH---HHHHHHhhc-c--HHHHHHHHHH-H-------------------HHhcCCCCCHHHHHHHHHHHHh-
Q 048794 611 --DD-SVVVP---IIKLFCRQK-K--ALAAKDLFVK-F-------------------TENLGVTSTLEMYNYLIHGLLE- 660 (967)
Q Consensus 611 --~~-~~~~~---l~~~~~~~~-~--~~~a~~~~~~-~-------------------~~~~~~~~~~~~~~~l~~~~~~- 660 (967)
+. ..... ....++... + ...-...+.. + +...........|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 00 00000 000011100 0 0000000000 0 0000001111222223222221
Q ss_pred ------cC-ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 048794 661 ------VH-ATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNS 733 (967)
Q Consensus 661 ------~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 733 (967)
.+ +...|+..+...++.. ..+...|+.|+-. ...|++.-|...|-+..... +....+|..++..+.+..+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEeccc
Confidence 11 1234555665555432 2345556666544 45566666666666666553 4455677777777778888
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048794 734 IDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD----YGCKPNCVIYNILINGFGKTGDVETACE 809 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 809 (967)
++-|...|.+..+.. |.+...|...+..-...|+.-++..+|..-.+ .|-.++...|.........+|+.++-+.
T Consensus 866 ~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred HHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 888888888877753 44455666666666777888888888776322 2333455556555556677777777666
Q ss_pred HHHHHHh--------CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHH
Q 048794 810 LFKQMIK--------GGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL-----NGLDADTISYNFMINGLGRSGRIE 875 (967)
Q Consensus 810 ~~~~~~~--------~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~ 875 (967)
.-+++.. .+..|+ ..+|...+....+.+.+.+|.+...+.+. .+.....+.--.++..+...|.++
T Consensus 945 t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred HhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh
Confidence 6555432 123455 57788888888888888888888887652 111222223335667777888888
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCC
Q 048794 876 EALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPR 941 (967)
Q Consensus 876 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~ 941 (967)
.|........ ..-+..+. ...-.++..|+++++.+.|++++++.-++..- ..++.+.+-+|.
T Consensus 1025 ~A~~a~~~~~---~evdEdi~-gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1025 SAKKASWKEW---MEVDEDIR-GTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred hHhhhhcccc---hhHHHHHh-hhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhh
Confidence 7665544332 11122221 12223366789999999999999888777775 455555544443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.1e-13 Score=141.96 Aligned_cols=227 Identities=15% Similarity=0.059 Sum_probs=158.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHH---HHHHHHHh
Q 048794 654 LIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHN---IVISGLVK 730 (967)
Q Consensus 654 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~ 730 (967)
.+..+...|++++|...++.+.+..+ .+..++..++..+...|++++|.+++.++.+.+..+...... ........
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 35556677777777777777777642 245567777778888888888888888887764332221111 11111233
Q ss_pred cCCHHHHHHHHHHHHhCCCC---CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--H-HHHHHHHHhccCCH
Q 048794 731 SNSIDKAMDLFYNLVSGGFS---PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV--I-YNILINGFGKTGDV 804 (967)
Q Consensus 731 ~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~-~~~l~~~~~~~~~~ 804 (967)
.+..+++.+.+..+....+. .++..+..++..+...|+.++|.+.+++.++.. ||.. . ...........++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh
Confidence 33334444566666654321 366788888999999999999999999999863 3333 1 11122223455788
Q ss_pred HHHHHHHHHHHhCCCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048794 805 ETACELFKQMIKGGIRPD-L--KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLF 881 (967)
Q Consensus 805 ~~A~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 881 (967)
+++++.+++.++. .|+ . .....+++++.+.|++++|.++|+++......|+...+..++.++.+.|+.++|.+++
T Consensus 316 ~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 316 EKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred HHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998884 565 3 4567899999999999999999996443335788888889999999999999999999
Q ss_pred HHHH
Q 048794 882 DEMK 885 (967)
Q Consensus 882 ~~~~ 885 (967)
++.+
T Consensus 394 ~~~l 397 (409)
T TIGR00540 394 QDSL 397 (409)
T ss_pred HHHH
Confidence 9876
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-12 Score=121.41 Aligned_cols=299 Identities=14% Similarity=0.043 Sum_probs=240.1
Q ss_pred HHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHH
Q 048794 622 FCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEE 701 (967)
Q Consensus 622 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 701 (967)
++-.++...+...+-.+....-.+.+......++..+...|++++|+..|+.....++ -+.......+..+.+.|+++.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhh
Confidence 3445555666666666666667788999999999999999999999999999887642 234444455566788899999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 048794 702 LLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD 781 (967)
Q Consensus 702 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 781 (967)
.-.+...+.... +....-|..-+......+++..|+.+-++.+..+ +.....+..-+.++...|+.++|.-.|+.+..
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 888888877653 2334455556666778899999999999999874 44455777788899999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhc-CCHHHHHHHHHHHHHCCCCCC-H
Q 048794 782 YGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLV-DCLCMV-GRVDDALHYFEELKLNGLDAD-T 858 (967)
Q Consensus 782 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~-g~~~~A~~~~~~~~~~~~~~~-~ 858 (967)
.. +.+..+|.-|+..|...|.+.+|.-+-+...+. ...+..++..++ .++... .--++|..++++.+.. +|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 63 236779999999999999999999999988774 344567777775 555443 3357899999999874 554 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 859 ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.+...+++.+...|++++++.++++.+. ..||....+.|+..+...+.+++|..+|..++++||+|..+
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 5678899999999999999999999985 67899999999999999999999999999999999999886
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-09 Score=112.78 Aligned_cols=457 Identities=16% Similarity=0.138 Sum_probs=251.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHH
Q 048794 25 KALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIK 104 (967)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (967)
.+....|++.+|...++.... |+. ....|..+.......|+.--|.++|..+-. .++.+...
T Consensus 452 gaaid~~df~ra~afles~~~-~~d-a~amw~~laelale~~nl~iaercfaai~d----------------vak~r~lh 513 (1636)
T KOG3616|consen 452 GAAIDDGDFDRATAFLESLEM-GPD-AEAMWIRLAELALEAGNLFIAERCFAAIGD----------------VAKARFLH 513 (1636)
T ss_pred ccccccCchHHHHHHHHhhcc-Ccc-HHHHHHHHHHHHHHhccchHHHHHHHHHHH----------------HHHHHHHH
Confidence 455678888888887776653 322 446788888888888887777777654421 11222223
Q ss_pred HHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048794 105 TVMNLLEEMER-LGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKM 183 (967)
Q Consensus 105 ~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 183 (967)
+..++-.+... .|- ....-|..-........++.+|..+|-+- .+ -...+..|....+|++|+.+-+..
T Consensus 514 d~~eiadeas~~~gg-dgt~fykvra~lail~kkfk~ae~ifleq------n~---te~aigmy~~lhkwde~i~lae~~ 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGG-DGTDFYKVRAMLAILEKKFKEAEMIFLEQ------NA---TEEAIGMYQELHKWDEAIALAEAK 583 (1636)
T ss_pred HHHHHHHHHhHhhCC-CCchHHHHHHHHHHHHhhhhHHHHHHHhc------cc---HHHHHHHHHHHHhHHHHHHHHHhc
Confidence 33333333332 121 11122222222223334566666655321 01 123444555566666666554332
Q ss_pred HhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048794 184 KASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLH 263 (967)
Q Consensus 184 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 263 (967)
|.+.-...-.+.+.++...|+-++|-++-. +...-.+.+..|.+.|.+..|......-... ..|..
T Consensus 584 ---~~p~~eklk~sy~q~l~dt~qd~ka~elk~---------sdgd~laaiqlyika~~p~~a~~~a~n~~~l--~~de~ 649 (1636)
T KOG3616|consen 584 ---GHPALEKLKRSYLQALMDTGQDEKAAELKE---------SDGDGLAAIQLYIKAGKPAKAARAALNDEEL--LADEE 649 (1636)
T ss_pred ---CChHHHHHHHHHHHHHHhcCchhhhhhhcc---------ccCccHHHHHHHHHcCCchHHHHhhcCHHHh--hccHH
Confidence 222222333445555556666555544321 1111123456666666666655443211110 11444
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc----------------------CCCCCHHHH-HHHHHHHhhcCChhhHHHHH
Q 048794 264 TYNTLICGLLRLDRVEEALEVFNNMEIL----------------------GVQPTAYTY-ILFIDYYGKSADPGKALETF 320 (967)
Q Consensus 264 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------------~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~ 320 (967)
....+..++.+..-+++|-.+|+++... .++....++ ..........|+++.|+..|
T Consensus 650 il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhf 729 (1636)
T KOG3616|consen 650 ILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHF 729 (1636)
T ss_pred HHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHH
Confidence 4444444444444444444444433210 011000000 01111122334444444443
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 048794 321 EKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEP 400 (967)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 400 (967)
-+.. .....+.+......|.+|+.+++.++... .-..-|..+...|...|+++.|.++|.+.-
T Consensus 730 iea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~------ 792 (1636)
T KOG3616|consen 730 IEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD------ 792 (1636)
T ss_pred HHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc------
Confidence 2221 12334556677788899999998888763 233456777888999999999999886542
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 048794 401 DVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480 (967)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (967)
.++..|.+|.+.|+|++|.++-.+.. ++......|..-..-+-.+|++.+|.+++-.+- .|+ ..+.
T Consensus 793 ---~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiq 858 (1636)
T KOG3616|consen 793 ---LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQ 858 (1636)
T ss_pred ---hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHH
Confidence 35667888999999999998876654 334455666666666777888998888765442 233 2356
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHH
Q 048794 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDA 560 (967)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 560 (967)
+|-+.|..+..+++..+-...- -..+...+..-+...|+...|...|-+..+ +......|...+-+++|
T Consensus 859 mydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~da 927 (1636)
T KOG3616|consen 859 MYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDA 927 (1636)
T ss_pred HHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHH
Confidence 7888898888888887765431 234556677778889999999888766554 33444555566666666
Q ss_pred HHHHH
Q 048794 561 FRLAK 565 (967)
Q Consensus 561 ~~~~~ 565 (967)
.+..+
T Consensus 928 yriak 932 (1636)
T KOG3616|consen 928 YRIAK 932 (1636)
T ss_pred HHHHh
Confidence 65543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.3e-13 Score=140.06 Aligned_cols=286 Identities=10% Similarity=0.054 Sum_probs=169.4
Q ss_pred HhhccHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCcCHh--hHHHHHHHHHccCCh
Q 048794 623 CRQKKALAAKDLFVKFTENLGVTSTLEMYNYL-IHGLLEVHATEMGLDLFTTMKNAGCAPDIS--TYNLLLDGYGKSGRV 699 (967)
Q Consensus 623 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 699 (967)
...|+++.|.+.+.+.... .+.+..+..+ +......|+++.|...+.++.+. .|+.. .....+..+...|++
T Consensus 95 ~~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred HhCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 3357777777666554221 2223333333 33336777777777777777664 23332 222335566777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-------cHHHHHHHHHcCCCHHHH
Q 048794 700 EELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPC-------TYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 700 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A 772 (967)
++|...++++.+.. |.+......+...|...|++++|..++.++.+....+... ++..+........+.+..
T Consensus 170 ~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777777777664 3345566666777777777777777777777654322111 122222222223334444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 773 KKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.++++...+. .+.+......++..+...|+.++|...+++.++. .|+.......+ ....++.+++++..++..+.
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~~--~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLLIP--RLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHh--hccCCChHHHHHHHHHHHhh
Confidence 4555544332 1335556667777777777777777777777763 44443222222 22346777777777777654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
. +.++..+..++.++.+.|++++|.+.|+.+++ ..|+...+..++.++.+.|+.++|.+++++++.+
T Consensus 324 ~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 H-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2 44556666777777777777777777777774 4567766667777777777777777777777654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-13 Score=143.95 Aligned_cols=283 Identities=11% Similarity=-0.001 Sum_probs=216.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhh-HHHHHHHHHccCChHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHH
Q 048794 660 EVHATEMGLDLFTTMKNAGCAPDIST-YNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI--SHNIVISGLVKSNSIDK 736 (967)
Q Consensus 660 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 736 (967)
..|++++|++......+.. ++... +...+....+.|+++.|..++.++.+. .|+.. ........+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 4799999998887766542 22233 333344558899999999999999886 44443 22344678899999999
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccCCHHHHHH
Q 048794 737 AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV-------IYNILINGFGKTGDVETACE 809 (967)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~ 809 (967)
|...+++..+.. |.++.++..++.+|.+.|++++|.+++.++.+.+..++.. +|..+........+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999875 5566788899999999999999999999999865432221 22223333334445566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 810 LFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 810 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
+++...+. .+.+......++..+...|+.++|...+++..+. ++++...... .....|+.+++.+.+++..+. .
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~--~~l~~~~~~~al~~~e~~lk~-~ 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLLI--PRLKTNNPEQLEKVLRQQIKQ-H 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH--hhccCCChHHHHHHHHHHHhh-C
Confidence 67766443 3445778899999999999999999999999873 5566433323 334569999999999999974 5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccceeeeccCCCcccccchhhhhh
Q 048794 890 SPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIYAENPRATSLSHKHCEYL 953 (967)
Q Consensus 890 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 953 (967)
|.|+..+..++..+.+.|++++|.++++++++.+|++.....++.++.+.|+.++|...+.+-+
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566888999999999999999999999999999999988899999999999999877444433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-08 Score=110.46 Aligned_cols=671 Identities=12% Similarity=0.019 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048794 103 IKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLK 182 (967)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 182 (967)
...+...|-+..+.. +.=...|..+...|+.--+...|.+-|++..+.+ ..+...+......|.+..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 344444444444332 1123456667777776667777777777776653 34556677777777777788777777332
Q ss_pred HHhCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048794 183 MKASS-HQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPN 261 (967)
Q Consensus 183 ~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 261 (967)
..+.. .......|....-.|...++...+..-|+..++.. +.|...|..+..+|.++|++..|.++|......+ |+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH
Confidence 22211 01111122223334556667777777777766654 3367777778888888888888888887766542 22
Q ss_pred HHHHH--HHHHHHhcCCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcc
Q 048794 262 LHTYN--TLICGLLRLDRVEEALEVFNNMEIL------GVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVV 333 (967)
Q Consensus 262 ~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 333 (967)
..|. ......+..|.+.+++..+...... +...-..++......+...|-..++.+.+++.++.
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~------- 700 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES------- 700 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------
Confidence 2222 2223344567777777777765432 11222344444444444445555555555543332
Q ss_pred cHHHHHHHHHhc-CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh---h---HHHHHHHHHHHCCCCCChh
Q 048794 334 SCNASLYSLAET-GR---IGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQV---D---EAVTLLSEMVENGCEPDVI 403 (967)
Q Consensus 334 ~~~~l~~~~~~~-g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~ 403 (967)
....+....... -. ..+|..+|...... .|+......+..-.-..+.. | -+.+.+-.-.+ ...+..
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~--~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~ 776 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDACYIFSQEEPS--IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMY 776 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc--chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhccc
Confidence 000000000000 00 11223333333211 12222111111101111111 1 00111100000 011222
Q ss_pred hHHHHHHHHHh----c----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHH
Q 048794 404 VMNTLIDTLYK----A----DRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTF 475 (967)
Q Consensus 404 ~~~~l~~~~~~----~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 475 (967)
.|..++..|.+ . .+...|+..+++..+..- .+..+|+.|.-. ...|++.-+.-.|-+-... -+....+|
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W 853 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQW 853 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhhe
Confidence 33333332222 1 112234444444433221 234444444332 2234444444443333322 12233444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHH-----hhcCCChhHHHhHHHH
Q 048794 476 NTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMR-----KWLYPDHITLCTLLPG 550 (967)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~l~~~ 550 (967)
..+.-.+....+++.|...|......+ +.+...|..........|+.-++..+|..-- +...+...-+......
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 444444445555555555555544443 1133333333333334444444444444311 1122222223333333
Q ss_pred HHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHH
Q 048794 551 VVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALA 630 (967)
Q Consensus 551 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 630 (967)
...+|+.++-+...+++ ..
T Consensus 933 h~~Ng~~e~~I~t~~ki-------------------------------------------------------------~s 951 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKI-------------------------------------------------------------SS 951 (1238)
T ss_pred HHhccchHHHHHHhhhh-------------------------------------------------------------hh
Confidence 33444433333322211 11
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCcCHhhHHHHHHHHHccCChHHHHHH
Q 048794 631 AKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNA-----GCAPDISTYNLLLDGYGKSGRVEELLKL 705 (967)
Q Consensus 631 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 705 (967)
|.-.++++. .+.+.+..+|...+......+.+..|.....+.+.- ........-...++.+...|+++.|...
T Consensus 952 As~al~~yf--~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 952 ASLALSYYF--LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hHHHHHHHH--hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 111111111 124566677777777777777777777666655431 0011122333456677778888876654
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCh-hcHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 048794 706 YEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSG-GFSPTP-CTYGPLIDGLSKSGRLEEAKKLFEEMLDYG 783 (967)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 783 (967)
+..... ..+......-+ +..-.|+++++.+.|+++++. +...+. .....++.+....+.-+.|...+-+.....
T Consensus 1030 ~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls 1105 (1238)
T KOG1127|consen 1030 SWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS 1105 (1238)
T ss_pred hcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 432211 11111111111 124468899999999999886 222222 234455666677788888888887777653
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048794 784 CKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP---DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTIS 860 (967)
Q Consensus 784 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 860 (967)
+++..+...+..++.-..+-.....+.+++.+. ... .-..-...-.+|.+.|+-....+.+++.+-.. +.++..
T Consensus 1106 -~~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~-P~~~~~ 1182 (1238)
T KOG1127|consen 1106 -KVQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSN-PGDPAL 1182 (1238)
T ss_pred -ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcC-CCChHH
Confidence 456666666655554444434444444444431 000 01112233456778899999999999988642 446666
Q ss_pred HHHH
Q 048794 861 YNFM 864 (967)
Q Consensus 861 ~~~l 864 (967)
|..|
T Consensus 1183 WslL 1186 (1238)
T KOG1127|consen 1183 WSLL 1186 (1238)
T ss_pred HHHH
Confidence 6654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-14 Score=130.96 Aligned_cols=248 Identities=13% Similarity=0.069 Sum_probs=212.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC
Q 048794 687 NLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS 766 (967)
Q Consensus 687 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 766 (967)
..++.+|.+.|.+.+|.+.++..++. .|-..++..+..+|.+.+++..|+.++.+.+.. ++.+......++..+..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 57888999999999999999999987 566778888899999999999999999998876 455555566788999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYF 846 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 846 (967)
++.++|.++|+.+++.. +.+......++..|.-.++++-|+.+|++++..|+ .+...|.+++-+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999863 33555666677778888999999999999999874 46788999999999999999999999
Q ss_pred HHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCC
Q 048794 847 EELKLNGLDA--DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 847 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 924 (967)
+++++.--.| ...+|.+|+.+.+..|++.-|.++|+-++.. -+.+.+.+++|+-.-.+.|+.++|..++..+-++.|
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc-CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999653334 4567889999999999999999999999864 344569999999999999999999999999999999
Q ss_pred Ccccc-ccceeeeccCC
Q 048794 925 SEFVS-SELQVIYAENP 940 (967)
Q Consensus 925 ~~~~~-~~l~~~~~~~g 940 (967)
+-.+. .+|+.+....|
T Consensus 461 ~m~E~~~Nl~~~s~~~g 477 (478)
T KOG1129|consen 461 DMAEVTTNLQFMSVHYG 477 (478)
T ss_pred cccccccceeEEeeecC
Confidence 99998 68887766555
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-09 Score=112.96 Aligned_cols=434 Identities=14% Similarity=0.092 Sum_probs=243.8
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChh-hHHH
Q 048794 329 VPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVI-VMNT 407 (967)
Q Consensus 329 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 407 (967)
.-+...|..+.-++...|+++.+.+.|++..... .-....|..+..+|...|.-..|..+++........|+.. .+..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3355666667777777777777777777766432 2234566667777777777777777777665543223322 2222
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCc
Q 048794 408 LIDTLY-KADRVDEAWEMFCRMKDM--KL--APTVVTYNTLLSGLGKE-----------GQVQKAIELFEGMTDHGCFPN 471 (967)
Q Consensus 408 l~~~~~-~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 471 (967)
....|. +.+..++++++..++.+. +. ......+..+.-+|... ....++++.+++..+.+ +.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 223332 345566666666555441 10 11233444444444311 11345556666666553 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHH
Q 048794 472 TVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGV 551 (967)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 551 (967)
+.....+.--|...++.+.|....++.++.+...+...|..+.-.+...+++.+|+.+.+......+.|.......+..-
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 33333444445666777777777777777654556677777777777777777777777776665555555444444444
Q ss_pred HhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHH
Q 048794 552 VKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAA 631 (967)
Q Consensus 552 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 631 (967)
..-++.++|+......+..+......+ ..++-...
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q---------------------------------------------~~~~~g~~ 592 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQ---------------------------------------------QTLDEGKL 592 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHh---------------------------------------------hhhhhhhh
Confidence 445666666665554433221000000 00000000
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC---ChHHHHHHHHH
Q 048794 632 KDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG---RVEELLKLYEE 708 (967)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 708 (967)
......+ .....+..+|.. +...+.......+ ..+.. +..
T Consensus 593 ~~lk~~l-------------------~la~~q~~~a~s---------------~sr~ls~l~a~~~~~~~se~~---Lp~ 635 (799)
T KOG4162|consen 593 LRLKAGL-------------------HLALSQPTDAIS---------------TSRYLSSLVASQLKSAGSELK---LPS 635 (799)
T ss_pred hhhhccc-------------------ccCcccccccch---------------hhHHHHHHHHhhhhhcccccc---cCc
Confidence 0000000 000001111111 1111111111000 00000 000
Q ss_pred HHhCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 709 MSFRGCKPN------TISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 709 ~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
.... ..|+ ...|......+...+..++|...+.++.... +.....|...+..+...|.+++|.+.|..+...
T Consensus 636 s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 636 STVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 0000 0111 1234455666777777788877777666652 445567888888899999999999999999875
Q ss_pred CCCC-CHHHHHHHHHHHhccCCHHHHHH--HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 783 GCKP-NCVIYNILINGFGKTGDVETACE--LFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 783 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.| +..+...++.++.+.|+..-|.. ++..+++ +.|+ ...|+.++.++.+.|+.++|.+.|+.+.+.
T Consensus 714 --dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 714 --DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred --CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 44 45588889999999888777777 8999988 5676 689999999999999999999999998863
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-08 Score=106.28 Aligned_cols=524 Identities=16% Similarity=0.118 Sum_probs=256.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 048794 128 CIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGN 207 (967)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 207 (967)
.|..|.+.|.+-.|...--.-.. ...+......+..++++..-+++|-++|+++... ...+..|.+-.-
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgda 689 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccH
Confidence 44555566655555443321111 1234444555555555555566666666655421 112222222222
Q ss_pred HHHHHHHHHHHHhCCCCCcHhHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 048794 208 IEVVKEFWSQMVADGYAADVVTY-TIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFN 286 (967)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 286 (967)
+.+|.++-+-. ++..+... ......+...|+++.|..-|-+... ....+.+......|.+|+.+++
T Consensus 690 f~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 690 FGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred HHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHH
Confidence 33333332221 11111111 1222334445555555544433221 1223445556677888888887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048794 287 NMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPD 366 (967)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 366 (967)
.+..... -..-|..+...|+..|+++.|.++|.+. ..++..+..|.+.|+|++|.++-.+... ....
T Consensus 757 niqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t 823 (1636)
T KOG3616|consen 757 NIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEAT 823 (1636)
T ss_pred Hhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC--chhH
Confidence 7765432 2234566777788888888888777543 2345667778888888888777655432 1233
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048794 367 SVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSG 446 (967)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 446 (967)
...|..-.+-.-..|.+.+|.+++-.+- .|+ ..|.+|-+.|..+..+++..+-.... -..+...+..-
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e 891 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKE 891 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHH
Confidence 3445444444556667777766654432 232 23455666666666666655432211 12233334444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC------------CCCC--------
Q 048794 447 LGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRN------------CWPD-------- 506 (967)
Q Consensus 447 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~-------- 506 (967)
+-..|+...|..-|-+.-+ |...+.+|..++-+++|-++-+.--..+ +-.+
T Consensus 892 ~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk 962 (1636)
T KOG3616|consen 892 LEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNK 962 (1636)
T ss_pred HHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHh
Confidence 4455555555543322211 2223333333344443333221110000 0000
Q ss_pred HHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhh
Q 048794 507 VLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGG 586 (967)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (967)
......-+...+..+.++-|..+-+-..+ ..-+.++..++..+...|++++|-+.|-.++..+.-. ..|...+..
T Consensus 963 ~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn---itwcqavps 1037 (1636)
T KOG3616|consen 963 HGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN---ITWCQAVPS 1037 (1636)
T ss_pred hhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc---chhhhcccc
Confidence 00111223334445555656555444333 2233456667777778889999888887777654322 123332221
Q ss_pred hcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 048794 587 ILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEM 666 (967)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 666 (967)
. +-...++.|..+. ..+.++...+++..|..+-+.. ....-+.++...++.-...|++.+
T Consensus 1038 r-----------fd~e~ir~gnkpe-----~av~mfi~dndwa~aervae~h----~~~~l~dv~tgqar~aiee~d~~k 1097 (1636)
T KOG3616|consen 1038 R-----------FDAEFIRAGNKPE-----EAVEMFIHDNDWAAAERVAEAH----CEDLLADVLTGQARGAIEEGDFLK 1097 (1636)
T ss_pred h-----------hhHHHHHcCCChH-----HHHHHhhhcccHHHHHHHHHhh----ChhhhHHHHhhhhhccccccchhh
Confidence 1 1111122221111 2345677888888887765332 222334566666677777888888
Q ss_pred HHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHH----------------hCCCCCChhhHHHHHHHHHh
Q 048794 667 GLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMS----------------FRGCKPNTISHNIVISGLVK 730 (967)
Q Consensus 667 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~ 730 (967)
|+.++-+.. +|+. .++.+...+-|.+|+.+.+..+ +.| .-....+..-..-..+
T Consensus 1098 ae~fllran----kp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq 1167 (1636)
T KOG3616|consen 1098 AEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQ 1167 (1636)
T ss_pred hhhheeecC----CCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHh
Confidence 877665444 3554 2344556666666666544321 111 1122233344444556
Q ss_pred cCCHHHHHHHHHHH
Q 048794 731 SNSIDKAMDLFYNL 744 (967)
Q Consensus 731 ~~~~~~A~~~~~~~ 744 (967)
+|++..|.+.+-++
T Consensus 1168 ~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1168 AGDWRKAVDALLKI 1181 (1636)
T ss_pred cccHHHHHHHHhhh
Confidence 77777777766554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-11 Score=113.09 Aligned_cols=461 Identities=13% Similarity=0.081 Sum_probs=239.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 048794 339 LYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRV 418 (967)
Q Consensus 339 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 418 (967)
+.-+....++..|+.+++.-...+-.....+-.-+..++.+.|++++|...+..+.+.. .++...+-.|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34456677788888887766544322222233334556678899999999888887654 56667777777777778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 048794 419 DEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEM 498 (967)
Q Consensus 419 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (967)
.+|..+..+..+ ++.--..++..-.+.|+-++-..+.+.+.+. ..--.+|.......-.+++|+.++.++
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888887665432 2333333444445667777776666655432 222334555554555688899999888
Q ss_pred ccCCCCCCHHHHHH-HHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcch
Q 048794 499 TPRNCWPDVLTYNT-IIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAER 577 (967)
Q Consensus 499 ~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 577 (967)
+..+ |+-...+. +.-+|.+..-++-+.+++.......|.++.+.+..+...++.=+...|....+........
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~---- 251 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ---- 251 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----
Confidence 8764 33333332 3445777788888888888888878887777776666655533322333322222111000
Q ss_pred hhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 048794 578 QFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHG 657 (967)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 657 (967)
.++.+..+ +-..
T Consensus 252 -------------------------------------------------~~~f~~~l-------------------~rHN 263 (557)
T KOG3785|consen 252 -------------------------------------------------EYPFIEYL-------------------CRHN 263 (557)
T ss_pred -------------------------------------------------cchhHHHH-------------------HHcC
Confidence 00000000 0011
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-----HHhcC
Q 048794 658 LLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISG-----LVKSN 732 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~ 732 (967)
+.--.+-+.|++++-.+.+. -| .+-..|+-.|.+.++..+|..+.+.+.-. .|-...+..+..+ .....
T Consensus 264 LVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred eEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHH
Confidence 11222334444444444432 11 11223333455566666666655544211 1111111111111 11111
Q ss_pred CHHHHHHHHHHHHhCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048794 733 SIDKAMDLFYNLVSGGFSPT-PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELF 811 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 811 (967)
..+.|...|.-+-+.+...+ .....+++..+.-..++++.+-+++.+... +..|...-.+++.+++..|++.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 23334444443333332222 223444555555555666666666665553 2223333344666666777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048794 812 KQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD-TISYNFMINGLGRSGRIEEALSLFDEMKKRGIS 890 (967)
Q Consensus 812 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 890 (967)
-++....++.+..-...|+++|.+.|+.+-|..++-++ +-+.+ ...+..++..|++.+++=-|.+.|..+.. ..
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lD 491 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LD 491 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cC
Confidence 66554322222333345566777777776666654332 21111 12233455666666766666666666653 45
Q ss_pred CCHHhH
Q 048794 891 PDLYTY 896 (967)
Q Consensus 891 ~~~~~~ 896 (967)
|+++.|
T Consensus 492 P~pEnW 497 (557)
T KOG3785|consen 492 PTPENW 497 (557)
T ss_pred CCcccc
Confidence 555444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-11 Score=113.26 Aligned_cols=454 Identities=11% Similarity=0.010 Sum_probs=280.0
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 376 CYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQK 455 (967)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 455 (967)
-+....++..|+.+++.-...+-+-...+-..+..++.+.|++++|...+.-+.+.. .++...+..+..++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 345567888888888776544322223344456667788999999999988877643 4566666666666667788888
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHh
Q 048794 456 AIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRK 535 (967)
Q Consensus 456 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (967)
|..+..+..+ ++.....++...-+.++-++-..+.+.+... ..--.++.......-.+++|+++|.++..
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8876554432 3334444555556677777766665555332 22233455555555678888888888876
Q ss_pred hcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcch
Q 048794 536 WLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVV 615 (967)
Q Consensus 536 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (967)
..|.-...-..++-.|.+..-++-+.++++-.+.+
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--------------------------------------------- 214 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--------------------------------------------- 214 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---------------------------------------------
Confidence 44433322333444555666665555555443322
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK 695 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 695 (967)
.+.++.+.+..+..+.+.-+-.-|++-.+.+.+.+.. . |-.....+..
T Consensus 215 ----------------------------~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~~f~~~l~rH 262 (557)
T KOG3785|consen 215 ----------------------------FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---YPFIEYLCRH 262 (557)
T ss_pred ----------------------------CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---chhHHHHHHc
Confidence 3556666666666666555555555555555553211 1 1111111111
Q ss_pred ----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC----
Q 048794 696 ----SGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG---- 767 (967)
Q Consensus 696 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 767 (967)
-.+-+.|+.++-.+.+. - +.+...++-.|.++++.++|..+....- |.++.-|..-+-.+...|
T Consensus 263 NLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcC
Confidence 13446677776666543 1 2344556667899999999998876532 223333333333333333
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 768 ---RLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 768 ---~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 843 (967)
...-|.+.|+-.-+.+...|+. -...++.++.-..++++.+-.++....- +..|.....+++.+++..|++.+|.
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHH
Confidence 3445555555544443333433 3455666666666889999888887663 4445566678999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 844 HYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
++|-.+....++....-...|+.+|.+.|+.+-|..++-++ ..+.+. ..+.-+++.+++++.+==|.+.|..+=.+
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 99988765444434444457899999999999998877554 344444 44456678899999988888888876666
Q ss_pred CCCcccc
Q 048794 923 QPSEFVS 929 (967)
Q Consensus 923 ~p~~~~~ 929 (967)
+|+--.|
T Consensus 491 DP~pEnW 497 (557)
T KOG3785|consen 491 DPTPENW 497 (557)
T ss_pred CCCcccc
Confidence 6665544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-11 Score=115.25 Aligned_cols=293 Identities=14% Similarity=0.146 Sum_probs=195.7
Q ss_pred hhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchH
Q 048794 518 VKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSI 597 (967)
Q Consensus 518 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (967)
.-+++.++|...|-+|.+..|....+...|+..|.+.|..+.|+++-+..+....-..
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~---------------------- 103 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTF---------------------- 103 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCch----------------------
Confidence 3456677777777777776666666777777777777777777766554443221110
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048794 598 LFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNA 677 (967)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 677 (967)
.....+...|+.-|...|-+|.|+.+|..+.+.
T Consensus 104 -----------------------------------------------~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de 136 (389)
T COG2956 104 -----------------------------------------------EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE 136 (389)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc
Confidence 011234556777788888888888888888875
Q ss_pred CCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 048794 678 GCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI----SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP 753 (967)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 753 (967)
+ ..-..+...|+.+|-...+|++|++.-+++.+.+..+... .+-.+...+....+.+.|+..+.++.+.+. ...
T Consensus 137 ~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cv 214 (389)
T COG2956 137 G-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK-KCV 214 (389)
T ss_pred h-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cce
Confidence 4 3345567778888888888888888888888775444332 233444445556778888888888888743 333
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCL 833 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 833 (967)
.+-..+++.+...|+++.|++.++.+.+.++.--+.+...|..+|.+.|+.++.+..+.++.+. .++...-..+...-
T Consensus 215 RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~li 292 (389)
T COG2956 215 RASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLI 292 (389)
T ss_pred ehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHH
Confidence 4555678888888999999999988888643222347778888888889999988888888884 44444445555544
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHH
Q 048794 834 CMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG---RSGRIEEALSLFDEMK 885 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~ 885 (967)
....=.+.|..++.+-+.. +|+...+..+++.-. ..|+..+....++.++
T Consensus 293 e~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 293 ELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 4444445555555554442 678777777776643 4445666677777776
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-09 Score=111.58 Aligned_cols=459 Identities=15% Similarity=0.135 Sum_probs=246.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 380 VGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIEL 459 (967)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 459 (967)
.+++...+++.+.+.+. .+-...+....+-.+...|+-++|..........++. +.+.|..+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 34555555555555542 2222333333333444555555555555554443322 344455555445555555555555
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhc--
Q 048794 460 FEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWL-- 537 (967)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 537 (967)
+......+ +.|..++..+.-.-...++++.....-...++.. +.....|..++-++.-.|++..|..+++...+..
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55555542 2344455444444444455555544444444432 1122334444444444555555555555544322
Q ss_pred CCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHH
Q 048794 538 YPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVP 617 (967)
Q Consensus 538 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (967)
+++...+... .....
T Consensus 176 ~~s~~~~e~s-----------------------------------------------------------------e~~Ly 190 (700)
T KOG1156|consen 176 SPSKEDYEHS-----------------------------------------------------------------ELLLY 190 (700)
T ss_pred CCCHHHHHHH-----------------------------------------------------------------HHHHH
Confidence 1222111110 01112
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHH-HHHHcc
Q 048794 618 IIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLL-DGYGKS 696 (967)
Q Consensus 618 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ 696 (967)
......+.|..++|.+-+..... ........-..-+..+.+.+++++|..+|..++.. .||...|+... .++.+-
T Consensus 191 ~n~i~~E~g~~q~ale~L~~~e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~ 266 (700)
T KOG1156|consen 191 QNQILIEAGSLQKALEHLLDNEK--QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKI 266 (700)
T ss_pred HHHHHHHcccHHHHHHHHHhhhh--HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHH
Confidence 23445566666666666654421 11122223334467788999999999999999987 46666655443 344333
Q ss_pred CChHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHH
Q 048794 697 GRVEELL-KLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKA-MDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKK 774 (967)
Q Consensus 697 g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 774 (967)
.+.-+++ .+|....+. .|-......+--....-.++.+. -.++...++.|.++- +..+...|-.-...+--.+
T Consensus 267 ~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~ 341 (700)
T KOG1156|consen 267 KDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEK 341 (700)
T ss_pred hhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHH
Confidence 3333444 666666554 22222222222222222333333 345666666665553 3333333332221111111
Q ss_pred HHHHHHH----C--------C--CCCCHHHHHH--HHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 048794 775 LFEEMLD----Y--------G--CKPNCVIYNI--LINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG 837 (967)
Q Consensus 775 ~~~~~~~----~--------~--~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 837 (967)
+...+.. . + -+|....|.. ++..+-..|+++.|+...+.++.+ .|+ +..|..-++++.+.|
T Consensus 342 Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G 419 (700)
T KOG1156|consen 342 LVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAG 419 (700)
T ss_pred HHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcC
Confidence 1111111 0 0 1455555544 566678999999999999999984 788 466777799999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--C-H---HhHH--HHHHHHHhcCCH
Q 048794 838 RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP--D-L---YTYN--SLILNLGRAGMV 909 (967)
Q Consensus 838 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~-~---~~~~--~l~~~~~~~g~~ 909 (967)
..++|..+++++.+.+ .+|...=+.-+.-..+.++.++|.++.....+.|... + . -+|. .-+.++.++|++
T Consensus 420 ~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~ 498 (700)
T KOG1156|consen 420 LLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKL 498 (700)
T ss_pred ChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHH
Confidence 9999999999999865 4444322245666789999999999999988765411 1 0 1233 225688888999
Q ss_pred HHHHHhhcCC
Q 048794 910 EEARKLAGGN 919 (967)
Q Consensus 910 ~~A~~~~~~~ 919 (967)
-+|.+-+..+
T Consensus 499 g~ALKkfh~i 508 (700)
T KOG1156|consen 499 GLALKKFHEI 508 (700)
T ss_pred HHHHHHHhhH
Confidence 8888766644
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-12 Score=126.65 Aligned_cols=236 Identities=14% Similarity=0.058 Sum_probs=165.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------ChhcHHHHH
Q 048794 687 NLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSP------TPCTYGPLI 760 (967)
Q Consensus 687 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~l~ 760 (967)
-.+++...+..+++.|++-|..++... .+...++....+|...|.+.+........++.|... -...+..++
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 456666777777888888888877763 455556666777777777777666665555543211 112233455
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCH
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRV 839 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 839 (967)
.+|.+.++++.|+..|++.+.....|+ ...+....++++...+...- +.|.. .-...-+..+++.|++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 677778888999999988776433322 23344456667766666554 45653 3344558888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 840 DDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
.+|...|.+++..+ +.|...|++.+-+|.+.|.+..|++-.+...+. -|+....|..-+.++..+.+|++|.+.|+++
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 557788899999999999999999998888864 2333477777788888888999999999999
Q ss_pred CcCCCCcccc-ccceeeec
Q 048794 920 CFVQPSEFVS-SELQVIYA 937 (967)
Q Consensus 920 l~~~p~~~~~-~~l~~~~~ 937 (967)
++.+|++..+ ..+...+.
T Consensus 453 le~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HhcCchhHHHHHHHHHHHH
Confidence 9999998886 34444433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-10 Score=109.54 Aligned_cols=292 Identities=12% Similarity=0.001 Sum_probs=205.0
Q ss_pred HHhcCCHHHHHHHHHhhccC-CCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHH
Q 048794 482 LCKNEEVDLAMKMLYEMTPR-NCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDA 560 (967)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 560 (967)
.+..++...|...+-.+... -++.+......++..+...|+.++|+-.|++.+-..|.....+-..+-.+.+.|.++.-
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhH
Confidence 34444444444443333222 24556777778888888888888888888887766665555544444444445554443
Q ss_pred HHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHH
Q 048794 561 FRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTE 640 (967)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 640 (967)
-.+..... .
T Consensus 286 ~~L~~~Lf-----------------------------------------------------------------------~ 294 (564)
T KOG1174|consen 286 SALMDYLF-----------------------------------------------------------------------A 294 (564)
T ss_pred HHHHHHHH-----------------------------------------------------------------------h
Confidence 33322211 1
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhh
Q 048794 641 NLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS 720 (967)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 720 (967)
.. .....-|..-+..+...+++..|+-+.++.++.+ +.+...+..-+..+...|+.++|+-.|+.+.... +.+..+
T Consensus 295 ~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~ 370 (564)
T KOG1174|consen 295 KV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEI 370 (564)
T ss_pred hh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHH
Confidence 10 0112223333455667888999999999888765 4477788888899999999999999999998774 567789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHH-HHHHc-CCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 048794 721 HNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLI-DGLSK-SGRLEEAKKLFEEMLDYGCKPNCV-IYNILING 797 (967)
Q Consensus 721 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~ 797 (967)
|..++.+|...|.+.+|...-+..... ++.+..++..++ .++.- ----++|.+++++.+.. .|+.. ..+.++..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHH
Confidence 999999999999999999888877765 344444555443 33322 22357899999998875 56644 77888888
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNG 853 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 853 (967)
+...|..++++.++++.+. ..||....+.|+.++...+.+.+|.+.|..++..+
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8899999999999999888 58888889999999999999999999999998753
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.5e-10 Score=107.64 Aligned_cols=286 Identities=16% Similarity=0.126 Sum_probs=211.7
Q ss_pred hcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048794 64 QSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYR 143 (967)
Q Consensus 64 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (967)
..|+|..|+++..+..+.+-.| ...|...+.+....|+.+.+-.++.++.+..-.++..+.....+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3799999999999988876444 446666778888999999999999999877445677778888899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHccCCHHHHHHHHH
Q 048794 144 ILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQ-------VTYITLLDKFSDCGNIEVVKEFWS 216 (967)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~ 216 (967)
-.+++.+.+ +.+..+.....++|.+.|++.....++..+.+.+.-.+. .++..++.-....+..+.....|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998875 567788899999999999999999999999998865544 367777777777777777777787
Q ss_pred HHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 048794 217 QMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPT 296 (967)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 296 (967)
..... ...++..-..++.-+.++|+.++|.++..+..+.+..|+ . ...-.+.+.++.+.-++..++..+.- +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 76544 344566677778888889999999999988888766555 1 22234456677777777776655442 233
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 297 AYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLK 359 (967)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 359 (967)
+..+..+...|.+.+.+.+|...|+...+. .|+...|..+...+.+.|+..+|.++.++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 356666666666666666666666655554 4555566666666666666666665555544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-12 Score=118.86 Aligned_cols=234 Identities=14% Similarity=0.077 Sum_probs=200.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 048794 652 NYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS 731 (967)
Q Consensus 652 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 731 (967)
..++..|.+.|-+.+|.+.++..++. .|-+.++..|...|.+...+..|+.+|.+-+... +-|..........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56788899999999999999999887 5677788889999999999999999999998873 44555556667788889
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELF 811 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 811 (967)
++.++|.++|+.+++.. +.+.....+++..|.=.|+.+.|+.+|+++++.|.. +...|++++.++.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999873 445566667777788889999999999999999865 8889999999999999999999999
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 812 KQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 812 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
++++..-..|+ ..+|++++.+....|++.-|.+.|+-++..+ ....+.+++|+-.-.+.|+.++|..+++.+.. +
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS--V 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--h
Confidence 99988645566 5789999999999999999999999999765 45678999999999999999999999999985 4
Q ss_pred CCCH
Q 048794 890 SPDL 893 (967)
Q Consensus 890 ~~~~ 893 (967)
.|+.
T Consensus 459 ~P~m 462 (478)
T KOG1129|consen 459 MPDM 462 (478)
T ss_pred Cccc
Confidence 4543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-09 Score=110.21 Aligned_cols=426 Identities=14% Similarity=0.113 Sum_probs=271.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhh
Q 048794 440 YNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVK 519 (967)
Q Consensus 440 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 519 (967)
|..++..| ..+++...+++.+.+... .+....+.....-.+...|+-++|.......+..++ .+...|..++-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhh
Confidence 34444433 567777777777777763 344445554444456667888888888877776553 366677777777777
Q ss_pred cCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHH
Q 048794 520 EQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILF 599 (967)
Q Consensus 520 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (967)
..++++|++.|..+.+..+.|...+..++-...+.++++.....-.+.+...++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-------------------------- 141 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-------------------------- 141 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--------------------------
Confidence 888888888888888888888888888888888888777766654444433211
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHH------HHHHHhcCChHHHHHHHHH
Q 048794 600 AEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYL------IHGLLEVHATEMGLDLFTT 673 (967)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~ 673 (967)
...-+...+..+.-.|++..|...++.+.+.....++...+... ...+.+.|..++|++.+..
T Consensus 142 -----------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 142 -----------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 11122334556667788888888888887666444444433322 3445678888888877765
Q ss_pred HHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHH-HHHHHHHhCCCCC
Q 048794 674 MKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVI-SGLVKSNSIDKAM-DLFYNLVSGGFSP 751 (967)
Q Consensus 674 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~-~~~~~~~~~~~~~ 751 (967)
....- -........-+..+.+.+++++|..+|..++.. .||...+.... .++....+.-+++ .+|....+. ++
T Consensus 211 ~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~- 285 (700)
T KOG1156|consen 211 NEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YP- 285 (700)
T ss_pred hhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Cc-
Confidence 54431 112333445677889999999999999999987 56665554444 4443444555555 556555543 22
Q ss_pred ChhcHHHHHHHHHcCCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH----h--CC------
Q 048794 752 TPCTYGPLIDGLSKSGRLE-EAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMI----K--GG------ 818 (967)
Q Consensus 752 ~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~--~~------ 818 (967)
.......+......-.++. ..-+++...++.|+++ ++..+...|-.-...+ ++++.+ . .|
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCc
Confidence 2211111211112212333 3345566667766542 3344444443322211 222221 1 01
Q ss_pred ------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 819 ------IRPDL--KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD-TISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 819 ------~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
-+|.. .+++.++.-+-+.|+++.|+.+++.++.+ .|+ .+.|..-+.++.+.|.+++|...++++.+.
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el-- 434 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL-- 434 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--
Confidence 14553 45567788888999999999999999985 565 456777789999999999999999999864
Q ss_pred CCCHHhHH-HHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 890 SPDLYTYN-SLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 890 ~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
..-....+ ..+.-..+.++.++|.+++.+..+
T Consensus 435 D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 435 DTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred cchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 33333444 778888899999999999886654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-09 Score=107.49 Aligned_cols=148 Identities=18% Similarity=0.108 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 048794 768 RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFK--------QMIKGGIRPDLKSYSVLVDCLCMVGRV 839 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~ 839 (967)
....|..++....+..+.....+....+.....+|+++.|++++. ...+.+..|. +...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 466777777777765433334566777777888899999998888 5555444444 333455556666665
Q ss_pred HHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048794 840 DDALHYFEELKLN--GLDADT----ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 840 ~~A~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 913 (967)
+-|..++.+++.. ...+.. ..+.-++..-.+.|+-++|.+.++++++. .+++..++..++.+|.+. +.+.|+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 5555555555420 001111 22333444455779999999999999975 677778889999888888 778888
Q ss_pred HhhcCC
Q 048794 914 KLAGGN 919 (967)
Q Consensus 914 ~~~~~~ 919 (967)
.+-+++
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 887754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-11 Score=122.35 Aligned_cols=196 Identities=16% Similarity=0.117 Sum_probs=100.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT 801 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 801 (967)
..++..+...|++++|...+++++... +.+...+..++..+...|++++|++.++++.+.. +.+...+..++..+...
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Confidence 333444444444444444444444331 2223344445555555555555555555555542 22334555555555556
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
|++++|+..+++++.....|. ...+..++.++...|++++|...+++++... +.+...+..++.++...|++++|...
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666554211121 3345555666666666666666666665532 22344555566666666666666666
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 881 FDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
++++.+. .+++...+..++..+...|+.++|..+.+.+..
T Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 192 LERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6665543 233344455555555566666666665554433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-09 Score=107.25 Aligned_cols=228 Identities=14% Similarity=0.146 Sum_probs=128.7
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--H
Q 048794 301 ILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCY--S 378 (967)
Q Consensus 301 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~ 378 (967)
..=+..+...|++++|.....++...+ +-+...+.+-+.++++.+.+++|+.+.+.-... ..+...+ +=.+| .
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Y 90 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEY 90 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHH
Confidence 344556677888888888888888765 335566777777888888888888555442211 1111111 23344 4
Q ss_pred HcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHH
Q 048794 379 KVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVT--YNTLLSGLGKEGQVQKA 456 (967)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a 456 (967)
+.+..++|...++... +.+..+...-...+.+.|++++|.++|+.+.+.+.. +... -..++.+ +-...+
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~----~a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAV----AAALQV 161 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH----HHhhhH
Confidence 7788888888887322 223335666677788888888888888888765432 2211 1111111 111111
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhc--------cCCCCCCHH-------HHHHHHHHHhhcC
Q 048794 457 IELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMT--------PRNCWPDVL-------TYNTIIYGLVKEQ 521 (967)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~-------~~~~l~~~~~~~g 521 (967)
. +.+..... ...+...+......+...|++..|++++.... ..+ ..+.. +.-.+...+...|
T Consensus 162 ~-~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d-~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 162 Q-LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDED-TNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred H-HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhc
Confidence 1 11111110 01122222333445667788888888888772 111 11111 1223444566778
Q ss_pred cHhHHHHHHHHHHhhcCCChhHHH
Q 048794 522 RVKDAIWFFHQMRKWLYPDHITLC 545 (967)
Q Consensus 522 ~~~~A~~~~~~~~~~~~~~~~~~~ 545 (967)
+.++|..+|..+.+..++|.....
T Consensus 239 qt~ea~~iy~~~i~~~~~D~~~~A 262 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNPADEPSLA 262 (652)
T ss_pred chHHHHHHHHHHHHhcCCCchHHH
Confidence 888888888888877777765543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-08 Score=106.41 Aligned_cols=259 Identities=17% Similarity=0.177 Sum_probs=158.5
Q ss_pred cHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CC
Q 048794 121 NVYTFTICIR--ILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASS---------HQ 189 (967)
Q Consensus 121 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~ 189 (967)
|..+--.++. .|..-|++|.|.+-.+-+. +..+|..+.+.|.+.++.+-|.-.+-.|.... ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4444444443 4667899999998888776 44789999999999888887766665554210 11
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048794 190 PDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLI 269 (967)
Q Consensus 190 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 269 (967)
|+ .+-....-.....|.+++|..++.+..+ |..+-..|-..|.+++|+++-+.-..-.+ ..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 21 1111122223456778888888877654 34455667778888888887765433222 23455555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 048794 270 CGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIG 349 (967)
Q Consensus 270 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 349 (967)
.-+-..++.+.|++.|++.... --..+..|. .++.......+++ .+...|.....-+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchH
Confidence 5556677888888888764321 111111111 1222222222222 24455555555566778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 350 EAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMK 429 (967)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 429 (967)
.|+.++..... |.++++..|-.|+.++|-++-++- -|...-..+.+.|-..|++.+|...|-++.
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888877653 456666677778888887776542 355556667888888888888888877654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-11 Score=126.38 Aligned_cols=236 Identities=23% Similarity=0.251 Sum_probs=163.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC-----C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CC
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFR-----G-CKPNTI-SHNIVISGLVKSNSIDKAMDLFYNLVSG-----G--FS 750 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~--~~ 750 (967)
+...++..|...|++++|..++++++.. | ..|... ..+.++..|...+++++|..+|+++++. | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666777777777777777666543 1 012222 2334666777778888888877777654 1 12
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhC---CCC
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY-----GC-KPNCV-IYNILINGFGKTGDVETACELFKQMIKG---GIR 820 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~ 820 (967)
.-..++..|+.+|.+.|++++|...++++.+. +. .|... .++.++..+..++++++|..++.+.++- -..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 22356778888888888888888888877542 11 12222 4666777788889999999999887651 011
Q ss_pred C---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----
Q 048794 821 P---D-LKSYSVLVDCLCMVGRVDDALHYFEELKLN-----G--LDADTISYNFMINGLGRSGRIEEALSLFDEMK---- 885 (967)
Q Consensus 821 p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 885 (967)
+ + ..++..|+..|.++|++++|.+++++++.. + .......++.++..|.+.+++++|.++|.+..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 2 357889999999999999999999998741 1 11134567889999999999999988888765
Q ss_pred HcCC-CCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCC
Q 048794 886 KRGI-SPDL-YTYNSLILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 886 ~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l 920 (967)
..|. .|+. ..|.+|+.+|.++|++++|+++.++++
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2221 2233 677899999999999999999998877
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-11 Score=132.30 Aligned_cols=180 Identities=11% Similarity=0.008 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 664 TEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYN 743 (967)
Q Consensus 664 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 743 (967)
+++|...++++++.+ +.+..++..++.++...|++++|+..|++++..+ +.+...+..++.++...|++++|+..+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444444444432 1234444445555555555555555555555543 22334444555555555555555555555
Q ss_pred HHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-
Q 048794 744 LVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD- 822 (967)
Q Consensus 744 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~- 822 (967)
++..++. +...+..++..+...|++++|+..++++.+...+.+...+..++.++...|++++|.+.++++... .|+
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~ 474 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITG 474 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchh
Confidence 5554322 111222223334445555666666655554321112334555555555566666666666555442 333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
......++..|...| ++|...++++.
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 233344444445444 24444444443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-09 Score=105.41 Aligned_cols=288 Identities=13% Similarity=0.092 Sum_probs=234.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 048794 29 LKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMN 108 (967)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (967)
.-|++.+|+....+.-+-+.. ....|..-..+.-+.|+.+.+-.++.++.+....++.....+....+...|+++.|+.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 468999999999997777655 3345666677778889999999999999987556777778888888999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHH
Q 048794 109 LLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDV-------VTYTVLIDALCTAGRLDQAKEIFL 181 (967)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~ 181 (967)
-+.++...+ +.+..+.....++|.+.|++.+...++.++.+.+.-.+. .+|..+++-....+..+.-.+.|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999877 567888899999999999999999999999998765444 367777777777777777777888
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048794 182 KMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPN 261 (967)
Q Consensus 182 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 261 (967)
..... ...++..-..++.-+..+|+.++|.++..+.++.+..++ ...+ -...+.++.+.-.+..+...+... .+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h~-~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQHP-ED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhCC-CC
Confidence 77543 455666777888889999999999999999998876655 2222 234577888888888887766543 36
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 048794 262 LHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIR 326 (967)
Q Consensus 262 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 326 (967)
+..+.+|...|.+.+.|.+|...|+...+. .|+..++..+..++.+.|++..|.+..++....
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 688999999999999999999999976654 799999999999999999999999998886543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.2e-11 Score=132.13 Aligned_cols=249 Identities=16% Similarity=0.006 Sum_probs=140.9
Q ss_pred ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH---------ccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 048794 663 ATEMGLDLFTTMKNAGCAPDISTYNLLLDGYG---------KSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNS 733 (967)
Q Consensus 663 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 733 (967)
++++|+..|++.++..+ .+...+..++.++. ..+++++|...++++...+ +.+..++..++.++...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 35667777777776532 13344545544433 2234667777777777664 3355566666666777777
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048794 734 IDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQ 813 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 813 (967)
+++|...|++++..+ +.+...+..++.++...|++++|+..++++.+..+. +...+..++..+...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777777653 334445666677777777777777777777765322 222333334444556677777777777
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048794 814 MIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP 891 (967)
Q Consensus 814 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 891 (967)
++... .|+ ...+..++.++...|++++|...+.++... .| .......++..|...| ++|...++.+.+. ..-
T Consensus 432 ~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~-~~~ 505 (553)
T PRK12370 432 LRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLES-EQR 505 (553)
T ss_pred HHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH-hhH
Confidence 66531 343 344566677777777777777777665542 23 2334445555566666 3666666665532 111
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 892 DLYTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 892 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
.......+..++.-.|+-+.|.-+ +++.+-
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 111112244455555665555555 544433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-10 Score=115.07 Aligned_cols=199 Identities=16% Similarity=0.107 Sum_probs=137.8
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHH
Q 048794 683 ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDG 762 (967)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 762 (967)
...+..++..+...|++++|+..++++.... +.+...+..++..+...|++++|.+.+++++... +.+...+..++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455566666677777777777777766553 3344556666667777777777777777776653 3334456667777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCK-PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 840 (967)
+...|++++|+..++++.+.... .....+..++.++...|++++|...++++++. .|+ ...+..++.++...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 77778888888888777764211 23346667777788888888888888888774 444 567777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 841 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+|..++++++... +.++..+..++.++...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888887652 44566666777788888888888887776653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-09 Score=108.18 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=84.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048794 375 KCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQ 454 (967)
Q Consensus 375 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 454 (967)
.+.+..|+++.|...|...+... +++...|+.-..+|...|++++|++--.+-++.++. -...|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHH
Confidence 45567899999999999988876 457888888888999999999998877777766533 5778888888888899999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 048794 455 KAIELFEGMTDHGCFPNTVTFNTLLHCL 482 (967)
Q Consensus 455 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (967)
+|+..|.+-++.. +.+...+..+..++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999999888763 44666677777766
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-10 Score=104.59 Aligned_cols=203 Identities=13% Similarity=0.020 Sum_probs=120.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT 801 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 801 (967)
..++..|...|++..|..-++++++.+ +....++..++..|.+.|+.+.|.+.|++++... +.+..+.|+.+..+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 344555666666666666666666642 3334456666666666666666666666666643 22445666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
|++++|...|++++..-.-|. ..+|.+++.|-.+.|+++.|..+|++.++.+ +..+.+...++......|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 666666666666665211112 3566666666666666666666666666643 22344455566666666666666666
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 881 FDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
++..... ..+..+.+.-.+..-.+.|+...|.++=.++-+..|..+.
T Consensus 196 ~~~~~~~-~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 196 LERYQQR-GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhc-ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 6666543 3355555555555566666666666665555555555554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-10 Score=122.63 Aligned_cols=238 Identities=22% Similarity=0.185 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcCHhh-HHHHHHHHHccCChHHHHHHHHHHHhCC---C-CC
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNA-----GC-APDIST-YNLLLDGYGKSGRVEELLKLYEEMSFRG---C-KP 716 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~ 716 (967)
..+...++..|...|+++.|+..++..++. |. .|.... ...++..|...+++++|+.+|++++..- . +.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 334444666666666777666666655543 11 223333 3347778889999999999999887641 0 22
Q ss_pred C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHC---C
Q 048794 717 N---TISHNIVISGLVKSNSIDKAMDLFYNLVSG-----G-FSPT-PCTYGPLIDGLSKSGRLEEAKKLFEEMLDY---G 783 (967)
Q Consensus 717 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 783 (967)
+ ..++..+..+|...|++++|..++++++.. + .++. ...+..++..+...+++++|..++++..+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 235677777899999999998888877654 1 1222 245677888899999999999999987652 1
Q ss_pred CCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 048794 784 CKPNC----VIYNILINGFGKTGDVETACELFKQMIKG------GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL- 851 (967)
Q Consensus 784 ~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 851 (967)
+.++. .++++|+..|..+|++++|.++|++++.. +..+. ...++.|+..|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22222 38999999999999999999999998762 12333 46778999999999999999999987653
Q ss_pred ---CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 852 ---NG--LDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 852 ---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
.| .+....+|.+|+.+|...|++++|+++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 12234578899999999999999999999887
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.3e-11 Score=119.87 Aligned_cols=119 Identities=13% Similarity=-0.039 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHHcCC-Cc--CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 048794 662 HATEMGLDLFTTMKNAGC-AP--DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAM 738 (967)
Q Consensus 662 ~~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 738 (967)
+..+.++..+.+++.... .| ....|..++..+...|++++|+..|+++++.. +.+...+..++..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555554321 11 12345555555566666666666666655543 223445555555555555555555
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 739 DLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
..|+++++.. +....++..++.++...|++++|++.++++.+.
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5555555542 222334455555555555555555555555553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.3e-09 Score=97.98 Aligned_cols=232 Identities=12% Similarity=0.067 Sum_probs=156.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh
Q 048794 618 IIKLFCRQKKALAAKDLFVKFTENLGVTST-------------LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIS 684 (967)
Q Consensus 618 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 684 (967)
.+..+.++|.++.|..-|+.++........ .......+..+.-.|+...|+.+...+++.. +.+..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 334555555555555555555443322111 0112223344556788888999998888764 35777
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-h-cHHH----
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP-C-TYGP---- 758 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~-~~~~---- 758 (967)
.+..-..+|...|++..|+.-++.+.+.. ..+...+..+-..+...|+.+.++...+++++.+++... . .|-.
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHH
Confidence 77778888999999999998888887653 345567778888888999999999999988886322211 0 1111
Q ss_pred -----HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 048794 759 -----LIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV---IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVL 829 (967)
Q Consensus 759 -----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 829 (967)
-+......++|.+++...+...+..+..... .+..+-.++...+++.+|++...++++ ..|+ ..++.--
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dR 347 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHH
Confidence 1223445677888888888888753321222 344566677788889999999998888 5676 6788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNG 853 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~ 853 (967)
+.+|.-...||.|+.-|+++.+.+
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888888999999999888754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.1e-10 Score=112.68 Aligned_cols=224 Identities=15% Similarity=-0.006 Sum_probs=134.8
Q ss_pred CChHHHHHHHHHHHhCCC-C--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHH
Q 048794 697 GRVEELLKLYEEMSFRGC-K--PNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAK 773 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 773 (967)
+..+.++.-+.+++.... . .....+...+..|...|+.++|...|+++++.. +.+...|..++..+...|++++|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666666666664321 1 113456667777777788888888887777763 345567777777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048794 774 KLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNG 853 (967)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 853 (967)
..|+++++..+ .+..+|..++.++...|++++|++.+++.++ ..|+..........+...+++++|...+.+.....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 88888777531 2445777777777777888888888888777 35553321112223345567778887776655321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCC-CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcc
Q 048794 854 LDADTISYNFMINGLGRSGRIEEALSLFDEMKKR---G--ISP-DLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 854 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
+|+... .+......|+..++ ..++.+.+. . +.| ...+|..++..+...|++++|+.+|+++++.+|.++
T Consensus 196 -~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 196 -DKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 222211 22233334544333 233333311 0 111 235677778888888888888888888888877555
Q ss_pred cc
Q 048794 928 VS 929 (967)
Q Consensus 928 ~~ 929 (967)
.-
T Consensus 271 ~e 272 (296)
T PRK11189 271 VE 272 (296)
T ss_pred HH
Confidence 53
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-09 Score=102.47 Aligned_cols=255 Identities=14% Similarity=0.067 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISG 727 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 727 (967)
..+...-+.++.+.|.+++|..-|+.+++.. |+...- ..++.+.--.++-. .....+..
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s 164 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKS 164 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHH
Confidence 3344445667788888888888888888764 321110 00111110111111 11111222
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETA 807 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 807 (967)
+...|+...|+.....+++.. +=+...+...+.+|...|+...|+.-++.+.+.. ..++.....+...+..-|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 334455555555555555542 2233344455555555555555555555554432 12334444555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHH----HHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhc
Q 048794 808 CELFKQMIKGGIRPDLKSY----SVL---------VDCLCMVGRVDDALHYFEELKLNGLDADTI---SYNFMINGLGRS 871 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~~~~~----~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 871 (967)
+...++.++ +.|+.... -.| +....+.++|.++++-.+++++......+. .+..+-.++...
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 555555555 34543211 011 112234455555555555555432111111 222334445555
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 872 GRIEEALSLFDEMKKRGISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 872 g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
|++.+|++...++++ +.|+ ..++..-+.+|.-...|++|+.-|+++.+.+|+|..+
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 666666666666664 3444 3556666666666666666666666666666666553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-09 Score=96.68 Aligned_cols=201 Identities=20% Similarity=0.117 Sum_probs=143.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 048794 686 YNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK 765 (967)
Q Consensus 686 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 765 (967)
...|+..|.+.|++..|.+-++++++.+ +.+..++..+...|...|+.+.|.+.|+++++.. +.+..+.+..+..+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3445666777777777777777777764 4455677777777777777777888887777763 4445577777788888
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 048794 766 SGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 843 (967)
.|++++|...|+++......+ -..+|.+++.+-.+.|+.+.|...|++.++ ..|+ ..+...++......|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHH
Confidence 888888888888887642112 234788888887888888888888888887 3565 467777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 844 HYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
.+++.....+ .++...+...+.+--+.|+-+.|-++=.++.+ ..|.+
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s 240 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYS 240 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCc
Confidence 8888777654 46777666667777778887777766666654 34444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-09 Score=114.75 Aligned_cols=294 Identities=18% Similarity=0.186 Sum_probs=207.8
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhh-HHHHHHHHH-
Q 048794 617 PIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIST-YNLLLDGYG- 694 (967)
Q Consensus 617 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~- 694 (967)
-....+...|++++|.+.+.+... .+.+........+..+.+.|+.++|...|..+++.+ |+... |..+..+..
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhh
Confidence 345677889999999999977533 345556677788999999999999999999999985 55444 444444442
Q ss_pred ----ccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCH
Q 048794 695 ----KSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSID-KAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRL 769 (967)
Q Consensus 695 ----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 769 (967)
.....+....+|+++.... |...+...+.-.+.....+. .+..++...+..|+|+ ++..+-..|....+.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 1235678889999888764 33333222222222223343 3445667777777554 566666667766555
Q ss_pred HHHHHHHHHHHHC--------------CCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 048794 770 EEAKKLFEEMLDY--------------GCKPNCV--IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDC 832 (967)
Q Consensus 770 ~~A~~~~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 832 (967)
.-...++...... .-+|+.. ++.-++..|...|++++|+++.++++++ .|. +..|...+.+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 5555666655421 0124443 4466688888999999999999999995 787 6788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------hH--HHHHHHHH
Q 048794 833 LCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLY------TY--NSLILNLG 904 (967)
Q Consensus 833 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~ 904 (967)
+.+.|++++|.+.++.+.+.+ ..|...=+..+..+.+.|++++|.+.+....+.+..|-.. +| ...+.++.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864 2344444456677889999999999999988655433321 33 35688999
Q ss_pred hcCCHHHHHHhhcCCCcC
Q 048794 905 RAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 905 ~~g~~~~A~~~~~~~l~~ 922 (967)
+.|++..|.+.+..+.+.
T Consensus 317 r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 999999999998866643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-07 Score=101.25 Aligned_cols=291 Identities=15% Similarity=0.139 Sum_probs=146.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-----c
Q 048794 96 AAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCT-----A 170 (967)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~ 170 (967)
.+...|++++|++.++.-... +.+........+..+.+.|+.++|..+|+.+.+++ |.+...|..+..+..- .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 345556666666666554332 33444455555666666666666666666666654 2233333333333311 1
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 048794 171 GRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNI-EVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSI 249 (967)
Q Consensus 171 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 249 (967)
...+...++|+++...- |...+...+.-.+..-..+ ..+..++...+..|+| .++..+-..|....+..-...+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 23455555666554431 2222211111111111111 2334444455555533 2333444444433333333334
Q ss_pred HHHHHhC--------------CCCCCHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCh
Q 048794 250 LDLMRGE--------------GILPNLH--TYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADP 313 (967)
Q Consensus 250 ~~~~~~~--------------~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (967)
+..+... .-+|+.. ++..+.+.+...|++++|+.+.+..+... +.....|..-++.+-..|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCH
Confidence 4333211 0123332 23445566667777777777777776653 23355666667777777777
Q ss_pred hhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHHcCChhH
Q 048794 314 GKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSV--------TYNMMMKCYSKVGQVDE 385 (967)
Q Consensus 314 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~ 385 (967)
.+|.+.++........ |...-+.....+.+.|+.++|..++......+..|... .......+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 7777777776655321 33334455556677777777777777766554322211 12334566777777777
Q ss_pred HHHHHHHHHH
Q 048794 386 AVTLLSEMVE 395 (967)
Q Consensus 386 a~~~~~~~~~ 395 (967)
|++.+..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 7777666654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-09 Score=109.56 Aligned_cols=258 Identities=13% Similarity=0.078 Sum_probs=182.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK 695 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 695 (967)
...+..+.+.|+..+|.-+|+..+++ .|....+|..|+......++-..|+..+++.++.. +.+..++..|+-.|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhh
Confidence 34567788888888888888887765 36677889999999998888888998888888864 3367788888888999
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHH---HH-H--HHHHhcCCHHHHHHHHHHHHhC-CCCCChhcHHHHHHHHHcCCC
Q 048794 696 SGRVEELLKLYEEMSFRGCKPNTISHN---IV-I--SGLVKSNSIDKAMDLFYNLVSG-GFSPTPCTYGPLIDGLSKSGR 768 (967)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l-~--~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 768 (967)
.|.-.+|++.++.-+...++.-..... .. . ........+....++|-.+... +...++.++..|+..|.-.|+
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 998899999888876543111000000 00 0 0011111223334455554444 334677788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFE 847 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 847 (967)
++.|++.|+.++... +.|...||.|+..++...+.++|+..|.++++ +.|+ +.+.++|+-.|...|.|+||..+|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998863 33667899999999888899999999999998 6888 6788899999999999999999988
Q ss_pred HHHHCCCC---C------CHHHHHHHHHHHHhcCCHHHHHH
Q 048794 848 ELKLNGLD---A------DTISYNFMINGLGRSGRIEEALS 879 (967)
Q Consensus 848 ~~~~~~~~---~------~~~~~~~l~~~~~~~g~~~~A~~ 879 (967)
.++....+ + +..+|..|-.++...++.|-+.+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 88742111 1 22456666556666666654443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=116.06 Aligned_cols=230 Identities=16% Similarity=0.104 Sum_probs=108.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC
Q 048794 689 LLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR 768 (967)
Q Consensus 689 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 768 (967)
.+..+.+.|+..+|.-+|+.+++.+ |.+..+|..|+.+....++-..|+..++++++.+ +.+..++..|+..|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 3444555666666666666666553 3344556666666666666566666666666542 3333455555555665555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH---------HHhccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCC
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILIN---------GFGKTGDVETACELFKQMIK-GGIRPDLKSYSVLVDCLCMVGR 838 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~ 838 (967)
-.+|++.+.+=+...+ . ..|..... .......+....++|-++.. .+..+|..+...|+-.|...|+
T Consensus 369 q~~Al~~L~~Wi~~~p--~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKP--K-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHHHhCc--c-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 5555555555444211 1 01110000 00000112222233333222 2222334444445555555555
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhh
Q 048794 839 VDDALHYFEELKLNGLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLA 916 (967)
Q Consensus 839 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 916 (967)
+++|...|+.++.- +| +...|+.|+-+++...+.++|++.|.++++ +.|+. .+++.|+-.+...|-|+||.+++
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 55555555555542 23 334455555555555555555555555553 44444 44455555555555555555555
Q ss_pred cCCCcCCCCcc
Q 048794 917 GGNCFVQPSEF 927 (967)
Q Consensus 917 ~~~l~~~p~~~ 927 (967)
-.+|.+.+.+.
T Consensus 522 L~AL~mq~ks~ 532 (579)
T KOG1125|consen 522 LEALSMQRKSR 532 (579)
T ss_pred HHHHHhhhccc
Confidence 55555544433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-05 Score=85.34 Aligned_cols=336 Identities=16% Similarity=0.176 Sum_probs=172.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH
Q 048794 129 IRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNI 208 (967)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 208 (967)
.......|.+++|+.+|++.... ..|=..|-..|.|++|.++-+.--. +. -..||......+...+|.
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccH
Confidence 33445667778888887776542 2233345567777777776554221 11 122444455555666777
Q ss_pred HHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 048794 209 EVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNM 288 (967)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 288 (967)
+.|.++|++.-.. -..++..|. .++.....+.+.+. +...|.....-+-..|+.+.|+.+|..+
T Consensus 875 ~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 875 EAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 7777777653211 111111111 11122222223322 3344555555555567777777766654
Q ss_pred HHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048794 289 EILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSV 368 (967)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 368 (967)
.. |-.+++..+-.|..++|-.+-++-. |...+..+...|-..|++.+|..+|.+.+.
T Consensus 939 ~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-------- 995 (1416)
T KOG3617|consen 939 KD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA-------- 995 (1416)
T ss_pred hh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------
Confidence 32 3344445555666666666554422 445556666667777777777776666542
Q ss_pred HHHHHHHHHHH-------------cC--ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH------
Q 048794 369 TYNMMMKCYSK-------------VG--QVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCR------ 427 (967)
Q Consensus 369 ~~~~l~~~~~~-------------~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------ 427 (967)
|...|+.|-. .+ +.-.|...|++.- .-+...+..|.+.|.+.+|+++--+
T Consensus 996 -fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~a 1066 (1416)
T KOG3617|consen 996 -FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSA 1066 (1416)
T ss_pred -HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHH
Confidence 2222222111 11 2222223333221 0122233456666666666654221
Q ss_pred ---H-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC-
Q 048794 428 ---M-KDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRN- 502 (967)
Q Consensus 428 ---~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 502 (967)
+ .+.....|+...+.-...++...++++|..++....+ |...+. +|...+..-..++-+.|....
T Consensus 1067 L~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alq-lC~~~nv~vtee~aE~mTp~Kd 1136 (1416)
T KOG3617|consen 1067 LDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQ-LCKNRNVRVTEEFAELMTPTKD 1136 (1416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHH-HHhcCCCchhHHHHHhcCcCcC
Confidence 1 2233445777777777778888888888887766554 223333 333344444444445554331
Q ss_pred CCCCHH----HHHHHHHHHhhcCcHhHHHHHHHHHH
Q 048794 503 CWPDVL----TYNTIIYGLVKEQRVKDAIWFFHQMR 534 (967)
Q Consensus 503 ~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 534 (967)
..|+.. +...++..+.++|.+..|.+-|.++-
T Consensus 1137 ~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1137 DMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred CCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 233332 34455666778888888877776654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-08 Score=93.32 Aligned_cols=192 Identities=13% Similarity=0.071 Sum_probs=121.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHh
Q 048794 371 NMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNT-LLSGLGK 449 (967)
Q Consensus 371 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 449 (967)
..++..+.+..+++.|++++..-.+.. +.+...++.+..+|....++..|-+.++++... .|...-|.. -...+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 344444556666777777776666553 224555666777777777777777777776553 233333322 2334456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHH
Q 048794 450 EGQVQKAIELFEGMTDHGCFPNTV--TFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAI 527 (967)
Q Consensus 450 ~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 527 (967)
.+.+..|+.+...|.+. ++.. ....-.......+++..+..+++.....+ +..+....+....+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 67777777777777542 1111 11111112345677777777777766443 4445555566677788888888
Q ss_pred HHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhc
Q 048794 528 WFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQI 571 (967)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 571 (967)
+-|+...+....++..-+.++-++.+.+++..|+++....+.+.
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 88888887777777777778888888888888888877777653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-07 Score=101.70 Aligned_cols=307 Identities=15% Similarity=0.034 Sum_probs=190.9
Q ss_pred cchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 048794 613 SVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTST-LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLD 691 (967)
Q Consensus 613 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 691 (967)
..+..++..+...++.+.+...+.+.........+ .......+..+...|++++|.+.+++.++..+ .+...+.. +.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hH
Confidence 33455667777778888877777776555443333 23333445566788999999999999887642 23333332 22
Q ss_pred HHHc----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC
Q 048794 692 GYGK----SGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG 767 (967)
Q Consensus 692 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 767 (967)
.+.. .+..+.+...+...... .+........+...+...|++++|...+++++... +.+...+..++.++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2322 34555555555442111 12223344566678889999999999999999874 444567788899999999
Q ss_pred CHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHH-H--HHHHHHHhcCCHH
Q 048794 768 RLEEAKKLFEEMLDYGCK-PNC--VIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSY-S--VLVDCLCMVGRVD 840 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~-~--~l~~~~~~~g~~~ 840 (967)
++++|+..+++..+.... ++. ..|..++.++...|++++|+..|+++......+. .... . .+...+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999998875321 232 3466788889999999999999999875321112 2111 1 3334444455433
Q ss_pred HHHHH--H-HHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------C-CHHhHHHHHHHHHhcCC
Q 048794 841 DALHY--F-EELKLN-GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGIS-------P-DLYTYNSLILNLGRAGM 908 (967)
Q Consensus 841 ~A~~~--~-~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~-~~~~~~~l~~~~~~~g~ 908 (967)
.+.++ + ...... ............+.++...|+.++|...++.+...... . ...+....+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33333 1 111111 00111122235667788999999999999888642111 0 12334456677888999
Q ss_pred HHHHHHhhcCCCcCC
Q 048794 909 VEEARKLAGGNCFVQ 923 (967)
Q Consensus 909 ~~~A~~~~~~~l~~~ 923 (967)
+++|...+..++.+-
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-07 Score=87.12 Aligned_cols=203 Identities=11% Similarity=0.035 Sum_probs=152.0
Q ss_pred cCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHH
Q 048794 12 IINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYS 91 (967)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 91 (967)
|+...-..+++.+..+.+..++++|.+++..-.++.++ +..-...+..+|....++..|-.+|+++... .|...-|.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHH
Confidence 34444556888999999999999999999999988765 7777788888999999999999999999774 35444333
Q ss_pred -HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 92 -ALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTIC--IRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALC 168 (967)
Q Consensus 92 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (967)
.-...+.+.+.+.+|..+...|.+. ++...-..- ....-..+++-.+..+.++.... .+..+.+.......
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheee
Confidence 3346677888999999999888653 222222222 22234568888999999888754 36666777777788
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 048794 169 TAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYA 224 (967)
Q Consensus 169 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 224 (967)
+.|+++.|.+-|+...+.+.-.....|+..+..| +.|+++.|.+...+++.+|+.
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 9999999999999988766555556776665444 668999999999999988754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-07 Score=95.85 Aligned_cols=259 Identities=12% Similarity=0.022 Sum_probs=156.8
Q ss_pred HHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcC-HhhHHHHHHHHHc
Q 048794 621 LFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLE----VHATEMGLDLFTTMKNAGCAPD-ISTYNLLLDGYGK 695 (967)
Q Consensus 621 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 695 (967)
.+...|++++|...+++++... |.+...+.. ...+.. .+....+.+.+.... ...|+ ......++..+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHH
Confidence 3444556666666666554432 333333332 222222 344444444444311 11233 3445566778899
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCh--hcHHHHHHHHHcCCCHHHH
Q 048794 696 SGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS-PTP--CTYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A 772 (967)
.|++++|...++++.... +.+...+..+..++...|++++|...+++.+..... +.. ..+..++..+...|++++|
T Consensus 127 ~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 127 AGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999875 445667788888999999999999999998876322 222 2455788999999999999
Q ss_pred HHHHHHHHHCCCCCCHH-HH-H--HHHHHHhccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 048794 773 KKLFEEMLDYGCKPNCV-IY-N--ILINGFGKTGDVETACELFKQMIKG--GIRPD---LKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 773 ~~~~~~~~~~~~~~~~~-~~-~--~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~ 843 (967)
+.+|+++......+... .. + .+...+...|....+.+ |+.+... ...|. .......+.++...|+.++|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR-WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH-HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 99999987542211222 11 1 22233334443222222 2222110 00111 122235677888899999999
Q ss_pred HHHHHHHHCCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 844 HYFEELKLNGLD-----A---DTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 844 ~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
..++.+...... . ........+.++...|++++|.+.+..++.
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999987642111 0 223344456678899999999999999874
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=96.90 Aligned_cols=116 Identities=10% Similarity=-0.042 Sum_probs=80.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 808 CELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
..++++.++ ..|+. +..++.++...|++++|...|+.++..+ +.+...+..++.++...|++++|+..|+++++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 355666666 35553 4456777777777777777777777643 335666777777777777777777777777753
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 888 GISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 888 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.|.+...+..++.++...|++++|+..++++++++|+++.+
T Consensus 88 -~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 88 -DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 34445777777777777777777777777777777777765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=108.96 Aligned_cols=259 Identities=17% Similarity=0.123 Sum_probs=140.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 048794 655 IHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSI 734 (967)
Q Consensus 655 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 734 (967)
++.+.-.|++..++.-.. ........+......+.+++...|+++.++. ++.... +|....+..+...+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556777777775555 2222222233445556667777777665543 222222 44444444444433333444
Q ss_pred HHHHHHHHHHHhCCCC-CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048794 735 DKAMDLFYNLVSGGFS-PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQ 813 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 813 (967)
+.++..++..+..... .+.......+.++...|++++|++++.+. .+.......+.+|...++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455544444333222 12222333345566677777777766543 2444555556667777777777777777
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048794 814 MIKGGIRPDL-KSYSVLVDCLCMVG--RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGIS 890 (967)
Q Consensus 814 ~~~~~~~p~~-~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 890 (967)
|.+ ...|. .+-..-+++....| ++.+|..+|+++.+. +.+++..++.++.++...|++++|.+.+++++.. -+
T Consensus 157 ~~~--~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-~~ 232 (290)
T PF04733_consen 157 MQQ--IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-DP 232 (290)
T ss_dssp HHC--CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HHh--cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-cc
Confidence 766 33342 22222233333333 477777777776543 4566677777777777777777777777777643 23
Q ss_pred CCHHhHHHHHHHHHhcCCH-HHHHHhhcCCCcCCCCccc
Q 048794 891 PDLYTYNSLILNLGRAGMV-EEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 891 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~ 928 (967)
.+++++.+++.+....|+. +.+.+++.++-..+|++|.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 3446666676666666665 5666677777677777776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.3e-09 Score=103.14 Aligned_cols=252 Identities=15% Similarity=0.118 Sum_probs=150.6
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 048794 619 IKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGR 698 (967)
Q Consensus 619 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 698 (967)
++-++-.|++..+..-.. . .....+........+.+.+...|+++.++. ++.+ +..|...+...+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~-~~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-L-KSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKK-SSSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-C-HTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-T-TSSCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-c-cCCCchhHHHHHHHHHHHHHHcCChhHHHH---Hhcc-CCChhHHHHHHHHHHHhCccc
Confidence 455667788887776555 2 222222234455566777778887776543 2222 225666666656555544455
Q ss_pred hHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHH
Q 048794 699 VEELLKLYEEMSFRGCKP-NTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFE 777 (967)
Q Consensus 699 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 777 (967)
.+.++.-+++.......+ +..........+...|++++|++.+.+. .+.......+.+|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666665554433222 2222233334555678888888776542 334455666778888888888888888
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHh--ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048794 778 EMLDYGCKPNCV-IYNILINGFG--KTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGL 854 (967)
Q Consensus 778 ~~~~~~~~~~~~-~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 854 (967)
.+.+. ..|.. +....++... ...++++|.-+|+++.+. ..++..+.+.++.++...|++++|...+++++..+
T Consensus 156 ~~~~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 156 NMQQI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHHCC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHHhc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 88775 33433 2222222222 233688888888887664 45667778888888888888888888888887654
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 048794 855 DADTISYNFMINGLGRSGRI-EEALSLFDEMKK 886 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 886 (967)
+.++.++.+++-+....|+. +.+.+++.++..
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 33566777777777788876 667777777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=0.00013 Score=79.47 Aligned_cols=488 Identities=14% Similarity=0.090 Sum_probs=247.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHH
Q 048794 27 LSLKGGLRRASFALEKMRAAGFV-LNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKT 105 (967)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (967)
....+++.+|+.-.+++.++.|. +..-++.++ .+.+.|+.++|..+++.....+.. |..+...+...|...++.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 45677888898888888887543 111222222 257788999999888877665443 67788888888888999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------ChHH
Q 048794 106 VMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAG----------RLDQ 175 (967)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~ 175 (967)
+..+|+.+... .|+......+..+|.|-+++.+-.+.--++-+. ++.....+=++++...+.- -..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999988765 356777777777888877766533333333221 2334444444444444321 1234
Q ss_pred HHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHH-HHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 176 AKEIFLKMKASS-HQPDQVTYITLLDKFSDCGNIEVVKEFWSQ-MVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLM 253 (967)
Q Consensus 176 A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (967)
|.+.++.+.+.+ ......-....+..+...|++++|.+++.. ....-...+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 555666665543 222222233334455667788888888743 333323334444456667777788888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHhc----------------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHH
Q 048794 254 RGEGILPNLHTYNTLICGLLR----------------LDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKAL 317 (967)
Q Consensus 254 ~~~~~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 317 (967)
..++.. | |...+....+ .+..+...+...+......+...-....+..-+..-|+.+++.
T Consensus 253 l~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~ 328 (932)
T KOG2053|consen 253 LEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEML 328 (932)
T ss_pred HHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHH
Confidence 776532 2 2222211100 0111111111111111100000000000111111223333322
Q ss_pred HHH-HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048794 318 ETF-EKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVEN 396 (967)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 396 (967)
..| ++.. +...|..-+..|...=..+.-..++....... ++.....+.+..
T Consensus 329 ~~y~~kfg------~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~------------------~~~s~~~k~l~~---- 380 (932)
T KOG2053|consen 329 SYYFKKFG------DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLAD------------------DDSSGDEKVLQQ---- 380 (932)
T ss_pred HHHHHHhC------CCcHhHhhHHHhhccCCHHHHHHHHHHhhccC------------------CcchhhHHHHHH----
Confidence 221 1111 01111111111211111222222222222110 011111111100
Q ss_pred CCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHH---hC------CCCCC---------HHHHHHHHHHHHhcCCH
Q 048794 397 GCEPDVIVMNTLIDTLYKADR-----VDEAWEMFCRMK---DM------KLAPT---------VVTYNTLLSGLGKEGQV 453 (967)
Q Consensus 397 ~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~---~~------~~~~~---------~~~~~~l~~~~~~~g~~ 453 (967)
+...+..--..|. -+.-...+.+.. +. +.-|+ ..+.+.++..+.+.++.
T Consensus 381 --------h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~ 452 (932)
T KOG2053|consen 381 --------HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDL 452 (932)
T ss_pred --------HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcH
Confidence 0000000001110 111111111110 11 11112 23446677788888776
Q ss_pred H---HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHH
Q 048794 454 Q---KAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFF 530 (967)
Q Consensus 454 ~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 530 (967)
. +|+-+++.-... -+.|..+-..+++.|+-.|-+..|.+.+..+.-+++..|..-+ .+...+...|++..+...+
T Consensus 453 ~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~ 530 (932)
T KOG2053|consen 453 TDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETSGRSSFASNTF 530 (932)
T ss_pred HHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhcccchhHHHHH
Confidence 5 455555555443 3457777788899999999999999999998777665444332 3455677789999999999
Q ss_pred HHHHhhcCCChhHHHhHHHHHHhcCChhHHHH
Q 048794 531 HQMRKWLYPDHITLCTLLPGVVKDGQIEDAFR 562 (967)
Q Consensus 531 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 562 (967)
+...+....+..-....+....+.|.|++-.+
T Consensus 531 ~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~e 562 (932)
T KOG2053|consen 531 NEHLKFYDSSLKETPEYIALAYRRGAYSKIPE 562 (932)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHcCchhhhHH
Confidence 88887655555555555555566777766444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.5e-08 Score=98.20 Aligned_cols=202 Identities=15% Similarity=0.089 Sum_probs=139.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH--HHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG-RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDV--ETAC 808 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~ 808 (967)
+..++|+..+.+++..+ +.+..+|.....++...| ++++++..++++++.+ +.+..+|+.-..++.+.|+. ++++
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 44556666666666642 223335555555566666 5688888888887764 23555777766666666653 6778
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----HHHHHH
Q 048794 809 ELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS---GRI----EEALSL 880 (967)
Q Consensus 809 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~ 880 (967)
.+++++++ ..|. ..+|...+.++...|+++++++.+.++++.+ ..+..+|+..+.++.+. |.+ ++++++
T Consensus 129 ~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 129 EFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 88888887 3554 5788888888888888888888888888765 33566777777666554 222 467777
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccC
Q 048794 881 FDEMKKRGISPDLYTYNSLILNLGR----AGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAEN 939 (967)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~ 939 (967)
..+++.. .|.|...|..+..++.. .++..+|...+.+++..+|+++.+ ..|+.+|.+.
T Consensus 206 ~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 206 TIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 7777753 34455888888888877 355677888888888888888888 5788888753
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-07 Score=86.58 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC 834 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 834 (967)
|..+..+....|+.+.|..+++++.+. ++.+..+-..-+..+...|++++|+++|+..++. +|. ..++-.-+.+.-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHH
Confidence 334444455556666666666666554 2222223222233445556666666666666664 343 234444445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG---MVEE 911 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 911 (967)
..|+--+|++.+.+-++. +..|.++|..++++|...|++++|.-++++++=. .|.++..+..++.+++-.| |++-
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 556655666666665553 4556666666666666666666666666666532 2334455556666665554 5566
Q ss_pred HHHhhcCCCcCCCCccc
Q 048794 912 ARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 912 A~~~~~~~l~~~p~~~~ 928 (967)
|.++|.++++++|.+.-
T Consensus 210 arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHHHhChHhHH
Confidence 66666666666665554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-06 Score=105.13 Aligned_cols=274 Identities=12% Similarity=0.014 Sum_probs=157.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCH----hhHHHHHHHHHccCChHHHHHHHHHHHhCCCC---CC--hhhHHHHH
Q 048794 655 IHGLLEVHATEMGLDLFTTMKNAGCAPDI----STYNLLLDGYGKSGRVEELLKLYEEMSFRGCK---PN--TISHNIVI 725 (967)
Q Consensus 655 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~~l~ 725 (967)
...+...|++++|...+++........+. .+...++..+...|++++|...+.++...... +. ..+...+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34455677777777777776653111111 23445566667778888888777776542111 11 12334555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCC---ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCC--HHHHHHH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSG----GFSP---TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYG--CKPN--CVIYNIL 794 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~l 794 (967)
..+...|++++|...+++.... +... ....+..++..+...|++++|...++++.... ..+. ...+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 6677778888887777766553 1111 11223445666667788888888877765421 1111 2244556
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC--CCCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 048794 795 INGFGKTGDVETACELFKQMIKG--GIRPDLK--SY--SVLVDCLCMVGRVDDALHYFEELKLNGLDAD---TISYNFMI 865 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 865 (967)
+.++...|++++|.+.++++... ...+... .. ......+...|+.+.|..++........... ...+..++
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 66677788888888888777541 1111110 00 0112334456778888777665443110111 11134567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 866 NGLGRSGRIEEALSLFDEMKKR----GISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
.++...|++++|...++++... |...+. .++..++.++.+.|+.++|...+.+++++......
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 7778888888888888877632 222222 45566777778888888888888888877655444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-08 Score=91.17 Aligned_cols=152 Identities=11% Similarity=0.167 Sum_probs=96.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 048794 725 ISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDV 804 (967)
Q Consensus 725 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 804 (967)
+..|...|+++.......+.... . ..+...++.++++..+++.++.. +.+...|..++..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 34566777776654443322211 0 01223566677777777777653 33666777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 805 ETACELFKQMIKGGIRPD-LKSYSVLVDCL-CMVGR--VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 805 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
++|+..|+++++ ..|+ ...+..++.++ ...|+ .++|.++++++++.+ +.+..++..++..+.+.|++++|+..
T Consensus 90 ~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777 3454 56666777654 55565 477777777777653 33566677777777777777777777
Q ss_pred HHHHHHcCCCCCH
Q 048794 881 FDEMKKRGISPDL 893 (967)
Q Consensus 881 ~~~~~~~~~~~~~ 893 (967)
|+++++. .+|+.
T Consensus 167 ~~~aL~l-~~~~~ 178 (198)
T PRK10370 167 WQKVLDL-NSPRV 178 (198)
T ss_pred HHHHHhh-CCCCc
Confidence 7777764 45544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.6e-07 Score=90.47 Aligned_cols=125 Identities=12% Similarity=0.038 Sum_probs=54.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 048794 654 LIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG-RVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSN 732 (967)
Q Consensus 654 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 732 (967)
+-..+...+..++|+..+.++++.+ +-+..+|+..+.++...| ++++++.+++++...+ +.+..+|.....++...|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 3333444555555555555555543 113344544444444444 3455555555555443 223334444444333333
Q ss_pred CH--HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 048794 733 SI--DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD 781 (967)
Q Consensus 733 ~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 781 (967)
.. ++++..++++++.+ +.+-.+|.....++...|+++++++.++++++
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 31 33344444444332 22223334444444444444444444444444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.3e-08 Score=94.72 Aligned_cols=186 Identities=14% Similarity=0.038 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 048794 718 TISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSP--TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC--VIYNI 793 (967)
Q Consensus 718 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ 793 (967)
...+...+..+...|++++|...+++++...+.. ...++..++.++.+.|++++|+..++++++..+.... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3455555566666666666666666665542211 1134455566666666666666666666654221111 13444
Q ss_pred HHHHHhcc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 794 LINGFGKT--------GDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFM 864 (967)
Q Consensus 794 l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 864 (967)
++.++... |++++|++.|+++++. .|+. .....+..... ... .. ......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~-------~~-------~~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN-------RL-------AGKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH-------HH-------HHHHHHH
Confidence 55555443 4556666666666552 3432 11111110000 000 00 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC--C-CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCC
Q 048794 865 INGLGRSGRIEEALSLFDEMKKRGIS--P-DLYTYNSLILNLGRAGMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 865 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 924 (967)
+..+.+.|++++|+..++++.+. .+ | ....+..++.++...|++++|..+++.+....|
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVEN-YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHH-CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56666777777777777776643 11 1 235666777777777777777776665544333
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-08 Score=90.06 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=139.8
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 737 AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
+...+-...... +.+..+ ..+...+...|+-+....+..+..... +.|......++....+.|++..|+..+.++..
T Consensus 52 a~~al~~~~~~~-p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 52 AAAALGAAVLRN-PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred HHHHHHHHHhcC-cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 443333333332 334444 677888888999888888888876542 44666777788889999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 048794 817 GGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTY 896 (967)
Q Consensus 817 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 896 (967)
. -+||..+|+.++.+|.+.|++++|..-|.++++.. .-++..+++++-.|.-.|++++|..++...... -+.|+.+.
T Consensus 129 l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-~~ad~~v~ 205 (257)
T COG5010 129 L-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-PAADSRVR 205 (257)
T ss_pred c-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-CCCchHHH
Confidence 4 34557899999999999999999999999999852 346778899999999999999999999998753 23367888
Q ss_pred HHHHHHHHhcCCHHHHHHhhcCCC
Q 048794 897 NSLILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 897 ~~l~~~~~~~g~~~~A~~~~~~~l 920 (967)
..++.+....|++.+|++...+-+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 899999999999999999887543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.3e-09 Score=72.11 Aligned_cols=49 Identities=45% Similarity=0.773 Sum_probs=33.1
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 048794 225 ADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLL 273 (967)
Q Consensus 225 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 273 (967)
||..+|+.++.+|++.|++++|.++|++|.+.|++||..||+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4666666666666666666666666666666666666666666666665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.7e-07 Score=82.79 Aligned_cols=180 Identities=14% Similarity=0.161 Sum_probs=133.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT 801 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 801 (967)
..+...+...|+-+.+..+....... .+.+.......+....+.|++..|+..+.++.... ++|...|+.++.+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 66667777778877777777665543 24444455557888888999999999999988764 56888999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
|+.++|...|.+.++ +.|+ ....++++..+.-.|+++.|..++..+...+ .-+..+-.+|+.+....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999988 4665 5678888888888899999999998888653 33666777888888999999999888
Q ss_pred HHHHHHcCCCCCH-HhHHHHHHHHHhcCCH
Q 048794 881 FDEMKKRGISPDL-YTYNSLILNLGRAGMV 909 (967)
Q Consensus 881 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 909 (967)
..+-.. ++.. .....|.......|.+
T Consensus 225 ~~~e~~---~~~~~~~~~~l~~~~~~~~~~ 251 (257)
T COG5010 225 AVQELL---SEQAANNVAALRAAASQSGAW 251 (257)
T ss_pred cccccc---chhHhhHHHHHHHhhcccchh
Confidence 766542 2222 3333444444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.3e-07 Score=85.38 Aligned_cols=118 Identities=9% Similarity=0.137 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC--HHHH
Q 048794 731 SNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGF-GKTGD--VETA 807 (967)
Q Consensus 731 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A 807 (967)
.++.+++...+++.+..+ +.+...|..++..|...|++++|+..|+++.+.. +.+...+..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344445555555544442 3344455555555555555555555555555542 12344555555542 34444 3555
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 808 CELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.++++++++. .|+ ..++..++..+...|++++|+..|+++++.
T Consensus 130 ~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555552 343 345555555555555555555555555543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5e-06 Score=101.10 Aligned_cols=235 Identities=14% Similarity=0.037 Sum_probs=114.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC---Cc--CHhhHHHHHHHHHccCChHHHHHHHHHHHhC----CCCC---Chhh
Q 048794 653 YLIHGLLEVHATEMGLDLFTTMKNAGC---AP--DISTYNLLLDGYGKSGRVEELLKLYEEMSFR----GCKP---NTIS 720 (967)
Q Consensus 653 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~ 720 (967)
.++..+...|++++|...+.+...... .+ ...++..++..+...|++++|...+++.... +... ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 334444555666666555555543210 00 1123344455556666666666666655432 1000 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHH----
Q 048794 721 HNIVISGLVKSNSIDKAMDLFYNLVSG----GFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP-NCVIY---- 791 (967)
Q Consensus 721 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~---- 791 (967)
+..+...+...|++++|...+.++... +.......+..++.++...|++++|...++++....... ....+
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 223344455566666666666665442 101112233345556666677777777666664320000 00000
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 048794 792 -NILINGFGKTGDVETACELFKQMIKGGIRPD---LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DTISYN 862 (967)
Q Consensus 792 -~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~ 862 (967)
...+..+...|+.+.|...+........... ...+..++.++...|++++|...++++... +... ...++.
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 0011233445666777666655433110001 011345566666777777777777766531 2111 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
.++.++...|+.++|...+.++++.
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666677777777777777777643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-07 Score=96.69 Aligned_cols=215 Identities=17% Similarity=0.099 Sum_probs=160.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 048794 686 YNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK 765 (967)
Q Consensus 686 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 765 (967)
-..++..+.+.|-...|+.+|++.. .|...+.+|...|+...|..+..+.+++ +|++..|..++++...
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3456778888899999999988765 3566778888889888888888887773 6777778777777666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048794 766 SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 844 (967)
.--++.|.++.+.... .+...++....+.++++++.+.|+...+ ..|- ..+|+.++.+..+.+++..|.+
T Consensus 470 ~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred hHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHH
Confidence 6556666666655433 1223333334457888888888888777 3453 6788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 845 YFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
.|...+... +.....|+++.-+|.+.|+-.+|...++++++.. ..+-.+|.+..-+....|.+++|++.+.+.+.+
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 888888743 3466788888888888888888888888888764 334577777888888888888888888877644
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.00011 Score=75.14 Aligned_cols=189 Identities=14% Similarity=0.169 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 048794 734 IDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG---RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACEL 810 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 810 (967)
.+++..++++.+..-...+...|..+++.-...- ..+..-..+++++..-...-..+|..++..-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4556666666665433333344444443222111 2444555666665431111123666677766666677788888
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 811 FKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 811 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
|.++.+.+..+ ++-....++..+|. ++.+-|.++|+.-+.. +..++.-....++-+.+.|+-..|..+|++++..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 88888765555 34455566665554 6777888888776643 344555555677777788888888888888876556
Q ss_pred CCCH--HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCC
Q 048794 890 SPDL--YTYNSLILNLGRAGMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 890 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 924 (967)
+++. .+|..++.-=..-|+...+.++-++-...-|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 6654 7788888777777888877777665555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.8e-09 Score=71.70 Aligned_cols=49 Identities=41% Similarity=0.775 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 048794 155 PDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFS 203 (967)
Q Consensus 155 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 203 (967)
||+.+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666665556666666666555554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-06 Score=98.90 Aligned_cols=284 Identities=10% Similarity=0.078 Sum_probs=186.0
Q ss_pred CCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhh
Q 048794 505 PDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLV 584 (967)
Q Consensus 505 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 584 (967)
.+...+..++..+...+++++|..+.+...+..|.....++.++..+.+.+++.++.-+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~----------------- 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL----------------- 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh-----------------
Confidence 35667788888888888888888888888887787777777777777777765554322 11
Q ss_pred hhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 048794 585 GGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHAT 664 (967)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 664 (967)
+.......++
T Consensus 90 ----------------------------------------------------------------------l~~~~~~~~~ 99 (906)
T PRK14720 90 ----------------------------------------------------------------------IDSFSQNLKW 99 (906)
T ss_pred ----------------------------------------------------------------------hhhcccccch
Confidence 1111122223
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 665 EMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNL 744 (967)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 744 (967)
.-...++..+.+. ..+..++..++.+|.+.|+.++|..+|++++..+ +.|..+.+.++-.|... +.++|+.++.++
T Consensus 100 ~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 100 AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 2223333444443 2345577888888888999999999999988886 55777888888888888 888888888887
Q ss_pred HhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCH
Q 048794 745 VSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKG-GIRPDL 823 (967)
Q Consensus 745 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~ 823 (967)
+.. |...+++..+..++.++....+. +...+..+.. ++... |..--.
T Consensus 176 V~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~----------------ki~~~~~~~~~~ 223 (906)
T PRK14720 176 IYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIER----------------KVLGHREFTRLV 223 (906)
T ss_pred HHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHH----------------HHHhhhccchhH
Confidence 753 55566888888888888875211 2223332222 22221 111123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR-GISPDLYTYNSLILN 902 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~ 902 (967)
.++.-+-..|...++|++++.+++.+++.. +.+..+...++..|. +++.. -..++..++. ++..
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~----------- 288 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGN----------- 288 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHHHHHHhcccc-----------
Confidence 456666777888889999999999999864 446666777777765 32222 2233333210 1111
Q ss_pred HHhcCCHHHHHHhhcCCCcCCCCccccc
Q 048794 903 LGRAGMVEEARKLAGGNCFVQPSEFVSS 930 (967)
Q Consensus 903 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 930 (967)
.-.++..|+.-|++.+..+|.|+..+
T Consensus 289 --~~~~~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 289 --NRKPVKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred --CCccHHHHHHHHHHHeeecCCCEEEE
Confidence 11467889999999999999999864
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.4e-07 Score=102.27 Aligned_cols=141 Identities=13% Similarity=0.131 Sum_probs=95.8
Q ss_pred CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 048794 749 FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSY 826 (967)
Q Consensus 749 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~ 826 (967)
.+.+...+..++.+..+.|++++|+.+++.+.+. .||. ..+..++.++.+.+++++|+..+++.+. ..|+ ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence 3445666777777777777777777777777774 4443 3666677777777777777777777777 3565 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYT 895 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 895 (967)
..++.++.+.|++++|..+|++++..+ +.+..++..++.++...|+.++|...|+++.+. ..|....
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~ 224 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARK 224 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHH
Confidence 667777777777777777777777632 334666777777777777777777777777653 3444433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-07 Score=89.99 Aligned_cols=186 Identities=13% Similarity=-0.020 Sum_probs=136.8
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--h
Q 048794 680 APDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT---ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP--C 754 (967)
Q Consensus 680 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~ 754 (967)
......+..++..+.+.|++++|+..|+++.... +.+. .++..++.++...|++++|+..++++++..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3466778889999999999999999999998874 2222 46788899999999999999999999987432222 2
Q ss_pred cHHHHHHHHHcC--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 048794 755 TYGPLIDGLSKS--------GRLEEAKKLFEEMLDYGCKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKS 825 (967)
Q Consensus 755 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 825 (967)
++..++.++... |++++|++.++++.+. .|+. ..+..+...... .. . . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~----~~------~-~-------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYL----RN------R-L-------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHH----HH------H-H-------HHH
Confidence 567778888765 7899999999999986 3443 233222211110 00 0 0 012
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGL--DADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
...++..+...|++++|+..++++++... +.....+..++.++...|++++|..+++.+..
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34677889999999999999999986421 22457888999999999999999999888874
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.5e-07 Score=81.15 Aligned_cols=122 Identities=13% Similarity=0.048 Sum_probs=83.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 774 KLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.+++++++. .|+ .+...+..+...|++++|+..|++++. ..|+ ..++..++.++...|++++|+..|++++..
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666653 333 355567777778888888888888777 3554 567778888888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
+ +.++.++..++.++...|++++|+..|+.+++. .+.+...+...+.+.
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~-~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM-SYADASWSEIRQNAQ 136 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHH
Confidence 3 446677777888888888888888888887753 233345554544443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4e-06 Score=76.81 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=69.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048794 730 KSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACE 809 (967)
Q Consensus 730 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 809 (967)
..|..+.|...++++... ++....+-..-+..+...|++++|+++|+.+++.+ +.|.+++-.-+.+.-.+|+--+|++
T Consensus 64 d~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence 334444444444444333 12222233333333444455555555555555443 2233344443334444444445555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 048794 810 LFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG---RIEEALSLFDEMKK 886 (967)
Q Consensus 810 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 886 (967)
-+...++. +..|..+|..++.+|...|++++|.-.+++++-.. |-++-.+..++++++-.| +.+-|.++|.++++
T Consensus 142 ~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 142 ELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55555543 33344555555555555555555555555554321 223334444555544333 34445555555553
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.1e-08 Score=85.12 Aligned_cols=115 Identities=18% Similarity=0.087 Sum_probs=75.8
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048794 810 LFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG 888 (967)
Q Consensus 810 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 888 (967)
+|++++. ..|+ ......++..+...|++++|.+.++++...+ +.+...+..++.++...|++++|...++++.+.
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL- 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4555555 3444 3455666677777777777777777766643 335566667777777777777777777776653
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 889 ISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 889 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
.+.+...+..++.++...|++++|.++++++++++|+++.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3334566667777777777777777777777777777666
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.1e-07 Score=100.80 Aligned_cols=237 Identities=11% Similarity=0.027 Sum_probs=127.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHH
Q 048794 645 TSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPD-ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNI 723 (967)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 723 (967)
+....++..|+..+...+++++|.++.+..++. .|+ ...|..++..+.+.++.+++..+ .+...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----------- 92 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS----------- 92 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence 445667777777777777777777777766654 333 33444555566666665555544 33222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 048794 724 VISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD 803 (967)
Q Consensus 724 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 803 (967)
.....++.....++..+.. ...+..++..++.+|.+.|+.++|..+|+++++.. +.+..+.|.++..|... +
T Consensus 93 ----~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 93 ----FSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ----cccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 1111222112222222222 12233366667777777777777777777777764 33566777777777776 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHH
Q 048794 804 VETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG-RSGRIEEALSLFD 882 (967)
Q Consensus 804 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 882 (967)
.++|++++.+++.. +...+++.++.++|.++.... +.+...+..+..... ..| +..
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~-~~~------ 221 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHRE-FTR------ 221 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhc-cch------
Confidence 77777777777652 334446666666666666532 112222221111111 111 111
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeee
Q 048794 883 EMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIY 936 (967)
Q Consensus 883 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~ 936 (967)
-...+.-+-..|...++|++++.+++.+|+.+|.|..+ ..|+.-|
T Consensus 222 ---------~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 222 ---------LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred ---------hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 11223334444555566777777777777777776666 4444444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-06 Score=82.49 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=59.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDYG---CKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCM 835 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 835 (967)
++-..+.|++..|.+.|.+++... ..++...|...+.+..+.|+..+|+.--+.+++ +.|. ...+..-+.++.-
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHH
Confidence 344556677777777777777532 123344566666677777777777777777776 4555 4556666677777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 048794 836 VGRVDDALHYFEELKLN 852 (967)
Q Consensus 836 ~g~~~~A~~~~~~~~~~ 852 (967)
.++|++|.+.|+++.+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777777777777653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-06 Score=94.55 Aligned_cols=215 Identities=12% Similarity=0.119 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHH-HHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLD-LFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVI 725 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 725 (967)
++.....+-.+....|..++|-. +..+..+ ++..........+++.-....... .+.+...+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 34445555556667777777643 3323221 222232223333333333333333 355678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVE 805 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 805 (967)
....+.|.+++|..+++.+.+.. +........++..+.+.+++++|+..++++++..+ .+....+.++.++.+.|+++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcchH
Confidence 99999999999999999999873 45566788899999999999999999999998642 25568888899999999999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 806 TACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 806 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
+|+++|++++.. .|+ ..++..++.++...|+.++|...|+++++.. .+....|+.+ .++...-...++.+
T Consensus 172 ~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~ 242 (694)
T PRK15179 172 QADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR------LVDLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH------HHHHHHHHHHHHHc
Confidence 999999999983 555 6899999999999999999999999999753 4444554433 23334444555555
Q ss_pred H
Q 048794 885 K 885 (967)
Q Consensus 885 ~ 885 (967)
-
T Consensus 243 ~ 243 (694)
T PRK15179 243 G 243 (694)
T ss_pred C
Confidence 4
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.1e-07 Score=93.31 Aligned_cols=224 Identities=15% Similarity=0.113 Sum_probs=140.3
Q ss_pred hcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh
Q 048794 605 CNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIS 684 (967)
Q Consensus 605 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 684 (967)
..+.|+.-..-..++..+...|=+..|...|++. ..+-..+..|...|+..+|..+..+.+++ +|+..
T Consensus 391 a~~lpp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ 458 (777)
T KOG1128|consen 391 APHLPPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPR 458 (777)
T ss_pred cCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcch
Confidence 4555555666677777777777777777777665 45666666677777777777776666653 45666
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHH
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLS 764 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 764 (967)
.|..+++.....--+++|.++++..... +-..+.......+++.++.+.++.....+ +....+|..++-+..
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAAL 530 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHH
Confidence 6666666655555566666665543321 22333333344667777777777666653 334456666666666
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPN-CVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 843 (967)
+.++++.|.+.|...... .|| ...|+++..+|.+.++-.+|...++++++-+ ..+...|.+.+.+....|.+++|.
T Consensus 531 qlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 777777777777777664 344 3467777777777777777777777776643 233445556666666667777777
Q ss_pred HHHHHHHH
Q 048794 844 HYFEELKL 851 (967)
Q Consensus 844 ~~~~~~~~ 851 (967)
+.++++.+
T Consensus 608 ~A~~rll~ 615 (777)
T KOG1128|consen 608 KAYHRLLD 615 (777)
T ss_pred HHHHHHHH
Confidence 77776664
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.7e-08 Score=90.27 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=71.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCC
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGM 908 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 908 (967)
+.-+.+.++|.+|+..|.++++.+ +.+++.|+.-+.+|.+.|.++.|++-.+.++. +.|.. ..|..|+.++...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 445566777888888888877753 34667777777788888888888877777775 45554 677777778888888
Q ss_pred HHHHHHhhcCCCcCCCCcccc
Q 048794 909 VEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 909 ~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+++|+..|+|+|+++|+|..+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHH
Confidence 888888888888888888776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-05 Score=74.70 Aligned_cols=249 Identities=15% Similarity=0.134 Sum_probs=154.3
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 048794 619 IKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGR 698 (967)
Q Consensus 619 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 698 (967)
++-++-.|++..+...-.+.... +.++.....+.+.|...|.+...+. .+... -.|...+...+.......++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcch
Confidence 45566677877777666555322 2445555556666777776654332 22222 14455555555555555566
Q ss_pred hHHHHHH-HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHH
Q 048794 699 VEELLKL-YEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFE 777 (967)
Q Consensus 699 ~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 777 (967)
.++-+.- ++.+.......+......-+..|++.+++++|++...... +......-...+.+..+++-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554433 3444433333343444445566788888888888776521 12233334556677778888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048794 778 EMLDYGCKPNCVIYNILINGFG----KTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNG 853 (967)
Q Consensus 778 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 853 (967)
+|.+. . +..+.+.|+.++. ..+++.+|.-+|+++.++ ..|+..+.+..+.++...|++++|..+++.++...
T Consensus 162 ~mq~i--d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI--D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc--c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 88874 2 4456666666653 234678888888888775 57777888888888888888888888888888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 048794 854 LDADTISYNFMINGLGRSGRI-EEALSLFDEMK 885 (967)
Q Consensus 854 ~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 885 (967)
..++.++.+++-.-...|.- +--.+.+.++.
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 44677777666666666654 34445555555
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-06 Score=96.41 Aligned_cols=203 Identities=15% Similarity=0.099 Sum_probs=110.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC---hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 048794 715 KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSG-GFSPT---PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVI 790 (967)
Q Consensus 715 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 790 (967)
|.++..|...+.-..+.++.+.|.++.++++.. ++... ...|.++.+.-...|.-+...++|+++.+. -....+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 334455566666666666666666666666554 11111 123444444444455555556666666653 112235
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMINGL 868 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~ 868 (967)
|..|...|.+.+++++|.++|+.|.+. +......|..++..+.++++-++|..+++++++.- +. -.....-.++.-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHH
Confidence 556666666666666666666666654 22334556666666666666666666666665431 11 122333445555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
.+.|+.+.+..+|+..+.. .|...+.|..++..-.++|+.+-++.+|++++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 5666666666666666543 3444566666666666666666666666666543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.6e-06 Score=91.79 Aligned_cols=246 Identities=16% Similarity=0.091 Sum_probs=173.4
Q ss_pred HHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcC
Q 048794 528 WFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNG 607 (967)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (967)
+=|.+.....|++...|...+.-+.+.+..+.|.+..++++...+...+
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe------------------------------- 1493 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE------------------------------- 1493 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh-------------------------------
Confidence 3345555557777788888877777778777777777766543211111
Q ss_pred CCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH
Q 048794 608 ICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYN 687 (967)
Q Consensus 608 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 687 (967)
......|.++++.-..-|.-+...++|+++.+. ......|.
T Consensus 1494 -------------------------------------eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1494 -------------------------------------EEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred -------------------------------------HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 122345666666666677777778888888875 23455677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhcHHHHHHHHHcC
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSP-TPCTYGPLIDGLSKS 766 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 766 (967)
.|...|.+.+.+++|.++|+.|.+.. ......|...+..+.++++-+.|..++.++++.-+.. ........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 88889999999999999999998874 4456678888888899998899999999988863221 233455567777888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDL--KSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 844 (967)
|+.+.+..+|+..+... +.-...|+.++..-.++|+.+.+..+|++++..++.|.. ..|......-...|+-..+..
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999888763 335668999999888999999999999999988777763 233333333344455444433
Q ss_pred H
Q 048794 845 Y 845 (967)
Q Consensus 845 ~ 845 (967)
+
T Consensus 1693 V 1693 (1710)
T KOG1070|consen 1693 V 1693 (1710)
T ss_pred H
Confidence 3
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00092 Score=68.73 Aligned_cols=154 Identities=8% Similarity=0.028 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 383 VDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAP-TVVTYNTLLSGLGKEGQVQKAIELFE 461 (967)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 461 (967)
.+.....++++...-...-..+|-.++...-+..-+..|+.+|.++.+.+..+ .+...++++..+| +++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44555566666544222223456677777777788999999999998876666 6777788887776 488899999998
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCC--CHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcC
Q 048794 462 GMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWP--DVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLY 538 (967)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (967)
--+.. ...++.-....+.-+...++-..|+.+|++++.....+ ...+|..++..-..-|+...++++-++.....+
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 76654 33445555566777788889999999999998874333 347888888888888999998888887766555
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.3e-05 Score=70.30 Aligned_cols=170 Identities=18% Similarity=0.188 Sum_probs=102.0
Q ss_pred HHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 671 FTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS 750 (967)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 750 (967)
.+.+.......+......-+..|.+.|++++|++..+... +..+...-..+..+..+.+-|....++|.+.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3344443323333333334456777777777777766522 1222223334455666777777777777763
Q ss_pred CChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048794 751 PTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSY 826 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 826 (967)
.+..+...++.++.+ .+.+.+|.-+|+++.++ .+|++.+.+-.+.++...|++++|..+++.++.+. ..+..++
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHH
Confidence 233455555555543 34577888888888764 46777777777878888888888888888887751 2335677
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDAL-HYFEELKL 851 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~-~~~~~~~~ 851 (967)
.+++.+--..|+..++. +.+.+...
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 77766666667655443 44444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-05 Score=76.54 Aligned_cols=292 Identities=12% Similarity=-0.030 Sum_probs=180.4
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHH
Q 048794 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDA 560 (967)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 560 (967)
.+.+..++..|+..+..+++..+. +...|..-+..+..-|++++|..-.++-.+..+..+.......+++...+...+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344455566666666666655422 3444555555566666677666666666665555555666666666666665555
Q ss_pred HHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHH
Q 048794 561 FRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTE 640 (967)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 640 (967)
.+.++..- .+ ....+...+++.+.
T Consensus 137 ~~~~~~~~----------------------------------------------------~~----~~anal~~~~~~~~ 160 (486)
T KOG0550|consen 137 EEKLKSKQ----------------------------------------------------AY----KAANALPTLEKLAP 160 (486)
T ss_pred HHHhhhhh----------------------------------------------------hh----HHhhhhhhhhcccc
Confidence 55544100 00 11112222222221
Q ss_pred hcCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChh
Q 048794 641 NLGVTSTLEMYNYL-IHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI 719 (967)
Q Consensus 641 ~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 719 (967)
...-+|.-..+..+ +..+.-.+++++|...--.+++.. ..+..++..-+.++.-.++.+.|+.-|++.+..+ |+..
T Consensus 161 s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~ 237 (486)
T KOG0550|consen 161 SHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQ 237 (486)
T ss_pred cccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhh
Confidence 11112222223333 345668889999988888887754 2355555555666777889999999999998874 4432
Q ss_pred h-------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 048794 720 S-------------HNIVISGLVKSNSIDKAMDLFYNLVSGGF---SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYG 783 (967)
Q Consensus 720 ~-------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 783 (967)
. +..-++-..+.|.+..|.+.|.+++..++ .+....|...+.+..+.|+.++|+.--+.+++.
T Consensus 238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i- 316 (486)
T KOG0550|consen 238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI- 316 (486)
T ss_pred hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-
Confidence 1 22223445678999999999999998743 334456888888999999999999999999874
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 048794 784 CKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLC 834 (967)
Q Consensus 784 ~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 834 (967)
.+.. ..+..-+.++...++|++|.+-|+++.+....+.. .++......+-
T Consensus 317 -D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 317 -DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 3332 25666677888899999999999999885333332 34433333333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.4e-06 Score=82.91 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC 834 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 834 (967)
....+..+...|.+++|+..+..++..- +.|...+...+..+.+.|+..+|.+.+++++. ..|+ .....+++.+|.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHH
Confidence 3334444455555566666665555531 22333444445555556666666666666555 3454 344455556666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALS 879 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 879 (967)
+.|++.+|+..++.....+ +.++..|..|+++|...|+..+|..
T Consensus 386 ~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 386 KGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred hcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 6666666666655555432 4455556666666665555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0046 Score=68.00 Aligned_cols=224 Identities=17% Similarity=0.194 Sum_probs=151.0
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 048794 62 ILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVA--AGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKID 139 (967)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 139 (967)
....++++.|+...+++.+. .|+. .|..++.+ +.+.|+.++|..+++.....+ ..|..+...+-.+|.+.|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhh
Confidence 35678999999999999875 4655 33444444 468999999998888776555 347888899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC----------CHH
Q 048794 140 EAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCG----------NIE 209 (967)
Q Consensus 140 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~~ 209 (967)
+|..+|++.... -|+......+..+|.+.+.+.+-.++--++-+ ..+-....+-+++..+...- -..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999875 46677777888889998887665444444333 23444555555555443221 123
Q ss_pred HHHHHHHHHHhCC-CCCcHhHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 048794 210 VVKEFWSQMVADG-YAADVVTYTIFVDALCKVGNVEEAFSIL-DLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNN 287 (967)
Q Consensus 210 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 287 (967)
-|....+.++..+ ...+..-...-...+-..|++++|.+++ ....+.-...+...-+.-+..+...++|.+..++..+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4556666666543 2223333334445556788899999988 3444443333444445556667778888888888888
Q ss_pred HHHcC
Q 048794 288 MEILG 292 (967)
Q Consensus 288 ~~~~~ 292 (967)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 77765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.8e-06 Score=72.61 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=69.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048794 775 LFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNG 853 (967)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 853 (967)
.+++++... +.+......++..+...|++++|++.++++... .| +...+..++.++...|++++|...+++++..+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555532 113345555666666777777777777777663 34 35666677777777777777777777776643
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 854 LDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 854 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+.+...+..++.++...|++++|...++++++
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666677777777777777777777775
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00014 Score=73.53 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=26.2
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 759 LIDGLSKS-GRLEEAKKLFEEMLDYGC---KPN--CVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 759 l~~~~~~~-g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
++..|... |++++|++.|+++.+.-. .+. ..++..++.++.+.|++++|+++|+++..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555 556666666655543200 000 11344455555555555555555555544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-05 Score=72.30 Aligned_cols=115 Identities=20% Similarity=0.135 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCH
Q 048794 801 TGDVETACELFKQMIKGGIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD--TISYNFMINGLGRSGRI 874 (967)
Q Consensus 801 ~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 874 (967)
.++...+...++.+.+. .|+ ..+...++.++...|++++|...|+.++....+|. ..+...|+.++...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45555555556665553 222 23334455556666666666666666665331221 22344456666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 875 EEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
++|+..++.... -+..+..+...+.++.+.|++++|+..|+++
T Consensus 102 d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666644321 1223344555666666666666666666554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.5e-05 Score=75.18 Aligned_cols=141 Identities=19% Similarity=0.260 Sum_probs=80.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 048794 723 IVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN-CVIYNILINGFGKT 801 (967)
Q Consensus 723 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 801 (967)
...-.+...|++++|+..++.++.. .+.++..+...++.+.+.|+..+|.+.+++++.. .|+ ...+..++.+|.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhc
Confidence 3333445556666666666665554 2344444445556666666666666666666664 333 44566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
|++.+|+..+++.... .| +...|..|+.+|...|+-.+|..- .++.|...|++++|+..
T Consensus 388 g~~~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A------------------~AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 388 GKPQEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLA------------------RAEGYALAGRLEQAIIF 447 (484)
T ss_pred CChHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHH------------------HHHHHHhCCCHHHHHHH
Confidence 6666666666666553 33 345666666666666555444332 33344456666666666
Q ss_pred HHHHHH
Q 048794 881 FDEMKK 886 (967)
Q Consensus 881 ~~~~~~ 886 (967)
+..+.+
T Consensus 448 l~~A~~ 453 (484)
T COG4783 448 LMRASQ 453 (484)
T ss_pred HHHHHH
Confidence 666654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00011 Score=74.31 Aligned_cols=147 Identities=17% Similarity=0.217 Sum_probs=61.9
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT-GDVETACELFKQMIK----GGIRPD--LKSYSVLVDCLC 834 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~ 834 (967)
.|...|++..|-+++.++-+ +|... |++++|++.|+++.+ .| .+. ...+..++.++.
T Consensus 103 ~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 34555555555555554432 23333 555555555555543 11 111 233445555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHhHHHHHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDA-----DT-ISYNFMINGLGRSGRIEEALSLFDEMKKR--GISPD--LYTYNSLILNLG 904 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~~ 904 (967)
+.|++++|.+.|+++....... +. ..+...+-++...|+...|...+++.... ++... ......|+.++-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 6666666666665555321111 11 12223333444555666666665555421 11111 123334444443
Q ss_pred hc--CCHHHHHHhhcCCCcCCC
Q 048794 905 RA--GMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 905 ~~--g~~~~A~~~~~~~l~~~p 924 (967)
.. ..+++|+.-|.++..++|
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---H
T ss_pred hCCHHHHHHHHHHHcccCccHH
Confidence 32 345555555555555543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-05 Score=71.21 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=86.7
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPN---CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRV 839 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 839 (967)
..++...+...++.+.+.. +.+ ......++..+...|++++|...|+.++.....|+ ..+...++.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 4678888888888888763 223 22555567778888999999999999888642333 23566788889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 840 DDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
++|+..++..... ...+..+..++++|...|++++|...|+++
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999998764332 234556778899999999999999998875
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.3e-06 Score=83.64 Aligned_cols=132 Identities=18% Similarity=0.117 Sum_probs=81.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC-CCCCHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIK----GGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELK----LNG-LDADTI 859 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~ 859 (967)
.|..|+..|.-.|+++.|+..-+.-+. -|-+.. ..++.+++.++...|+++.|.++|+..+ +.+ -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 466666667777777777776554332 222222 3566777778887888888888877654 222 112334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcC-CCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 860 SYNFMINGLGRSGRIEEALSLFDEMK----KRG-ISPDLYTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 860 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
....|+.+|.-..++++|+.+..+=+ +.+ .......+++|+.++...|..++|..++++.++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45557777777777888877766543 111 112335667777777777887877777776553
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.3e-06 Score=72.45 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHhHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLD-A-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD----LYTYNS 898 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 898 (967)
+++.++..+...|++++|...+++++..... + ....+..++.++...|++++|...++.+... .|+ ..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHH
Confidence 4555566666666666666666666543211 0 1334555666666666666666666666532 122 345556
Q ss_pred HHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 899 LILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 899 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
++.++...|++++|.++++++++..|+++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 666666666666666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.28 E-value=6e-06 Score=68.51 Aligned_cols=97 Identities=22% Similarity=0.226 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.++.+.+. .+.+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHH
Confidence 4455566666666666666666665532 223345555666666666666666666666543 23333556666666666
Q ss_pred cCCHHHHHHhhcCCCcCCC
Q 048794 906 AGMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 906 ~g~~~~A~~~~~~~l~~~p 924 (967)
.|++++|...+++++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 6666666666666666655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.7e-06 Score=86.24 Aligned_cols=105 Identities=11% Similarity=-0.002 Sum_probs=77.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048794 793 ILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS 871 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 871 (967)
..+..+...|++++|+..|+++++. .|+ ...+..++.+|...|++++|+..+++++..+ +.+..+|..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 3455566778888888888888873 555 5677788888888888888888888888753 34667788888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHH
Q 048794 872 GRIEEALSLFDEMKKRGISPD-LYTYNSLILN 902 (967)
Q Consensus 872 g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 902 (967)
|++++|+..|+++++. .|+ ..+...+..+
T Consensus 84 g~~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 8888888888888863 344 3444444433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.3e-05 Score=76.83 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhcHHHHHHHHHcCCCHHHHHHHHHHHHH----CCC-CCCH
Q 048794 719 ISHNIVISGLVKSNSIDKAMDLFYNLVSG----GFS-PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD----YGC-KPNC 788 (967)
Q Consensus 719 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~ 788 (967)
.++..+++.|.-.|+++.|+...+.-+.. |.. ....++..+++++.-.|+++.|.+.|+..+. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35667777888889999988766543322 211 1235677888999999999999999987653 221 1233
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIK----G-GIRPDLKSYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
.+...|+..|.-...+++|+.++.+-+. . +......++.+|+.++...|..++|+.+.+..+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4677888888888889999999887653 1 122335678899999999999999988887765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.006 Score=60.25 Aligned_cols=288 Identities=13% Similarity=0.064 Sum_probs=184.9
Q ss_pred hccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH--HHHHHHHccCChHHH
Q 048794 625 QKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYN--LLLDGYGKSGRVEEL 702 (967)
Q Consensus 625 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A 702 (967)
.||-..|++.-.+..+.......+.+...-+..-.-.|++++|.+-|+.|++ .|....+. -|.--..+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 4555555555544322211122222222223445578999999999999996 34433222 222223467888999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChh----cHHHHHHHHHc-CCCHHHHHHHH
Q 048794 703 LKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGG-FSPTPC----TYGPLIDGLSK-SGRLEEAKKLF 776 (967)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~-~g~~~~A~~~~ 776 (967)
..+-.++.... +.-...+...+...+..|+++.|+++.+...... +.++.. .-..-+.+... .-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 98888887663 3345677888888999999999999988766542 222221 11111111111 12355566666
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---HHC
Q 048794 777 EEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEEL---KLN 852 (967)
Q Consensus 777 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~ 852 (967)
.+..+. .||.. .-..-+..+.+.|+..++-.+++.+.+. .|....+ +...+.+.|+. ++.-++++ .+
T Consensus 253 ~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia--~lY~~ar~gdt--a~dRlkRa~~L~s- 323 (531)
T COG3898 253 LEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIA--LLYVRARSGDT--ALDRLKRAKKLES- 323 (531)
T ss_pred HHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHH--HHHHHhcCCCc--HHHHHHHHHHHHh-
Confidence 666663 66765 3344466788999999999999999985 4444332 22334555653 33333333 23
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CCHHHHHHhhcCCCcCCCCcccc
Q 048794 853 GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA-GMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 853 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++| +.+....++++-...|++..|..--+.+.+ ..|...+|..|+.+-... |+-.++..++-+++ ..|.+|.|
T Consensus 324 -lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav-~APrdPaW 398 (531)
T COG3898 324 -LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV-KAPRDPAW 398 (531)
T ss_pred -cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh-cCCCCCcc
Confidence 344 566777788888999999999998888875 678888888888887766 99999999999987 67888888
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-06 Score=65.87 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcc
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
.++..+...|++++|.+.|+++++. .|.+..++..++.++...|++++|+.+++++++.+|+||
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ-DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3677888889999999999998864 233458888889999999999999999999999998876
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.4e-05 Score=66.08 Aligned_cols=93 Identities=8% Similarity=-0.034 Sum_probs=60.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
....++..+...|++++|..+|+-+.. +.|. ..-|..|+-++...|++++|+..|..+...+ +.++..+..++.++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 444555555666777777777776665 4554 3556666666666777777777777666644 34556666667777
Q ss_pred HhcCCHHHHHHHHHHHH
Q 048794 869 GRSGRIEEALSLFDEMK 885 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~ 885 (967)
...|+.+.|.+.|+.++
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 77777777777776665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-05 Score=66.83 Aligned_cols=104 Identities=11% Similarity=-0.125 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
....+.++.-+...|++++|..+|+-....+ +.+...|..|+-++...|++++|+..|..+.... +.++..+..++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 4677888888999999999999999888743 3366778889999999999999999999998652 4456899999999
Q ss_pred HHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 903 LGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 903 ~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
+...|+.+.|++.|+.++..--++|.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99999999999999988877644444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-06 Score=82.51 Aligned_cols=123 Identities=13% Similarity=0.080 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 048794 803 DVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG---RIEEAL 878 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 878 (967)
..+..+.-++.-+.. +|+ ...|..|+.+|...|+++.|..-|.++.+.. .+++..+..++.+++.+. ...++.
T Consensus 137 ~~~~l~a~Le~~L~~--nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 137 EMEALIARLETHLQQ--NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred cHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 456666666665553 454 6788888888888888888888888888753 456777777887765444 467788
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 879 SLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.+++++++. -+.|.....-|+..++..|+|.+|...++..++..|.+..+
T Consensus 214 ~ll~~al~~-D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 214 ALLRQALAL-DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 888888863 23344777788888888888888888888888888887775
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.2e-05 Score=72.73 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
..+..++..+...|++++|+..|+++++.+..|. ...+..++.++.+.|++++|...++++++.. +.+...+..++.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3677777778788888888888888876322222 3567778888888888888888888887643 334556667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
++...|+...+...++.+.. .+++|.+.+++++.++|++..
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~~~ 155 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNNYI 155 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchhHH
Confidence 88777777666655444431 268889999999999999853
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=73.77 Aligned_cols=100 Identities=12% Similarity=-0.006 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCK-PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHY 845 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 845 (967)
+..+...+..+.+.... .....|..++..+...|++++|+..|++++.....|. ..++..++.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44455555555322111 1123556666666666666666666666665311111 23566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 846 FEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
+++++... +.....+..++.++.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHH
Confidence 66666532 223445555666655
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=74.89 Aligned_cols=131 Identities=23% Similarity=0.281 Sum_probs=93.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 048794 759 LIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG 837 (967)
Q Consensus 759 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 837 (967)
-++-..+.++|++|+..|.++++.. +.|.+.|..=+.+|.+.|.++.|++-.+..+. +.|. ..+|..|+.+|...|
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 3566778888999999999998863 34677788888889999999999999998888 6787 578888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHH
Q 048794 838 RVDDALHYFEELKLNGLDADTISY-NFMINGLGRSGRIE---EALSLFDEMKKRGISPDLY 894 (967)
Q Consensus 838 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~ 894 (967)
++++|++.|+++++ +.|+-.+| ..|-.+--+.++.. .+..-.+.....|..|+..
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 99999999999887 46655444 34444433444333 4444444444445545553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.5e-05 Score=81.70 Aligned_cols=141 Identities=12% Similarity=0.110 Sum_probs=101.7
Q ss_pred CCCHHHHHHHHHH--HhccC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 048794 785 KPNCVIYNILING--FGKTG---DVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMV--------GRVDDALHYFEELK 850 (967)
Q Consensus 785 ~~~~~~~~~l~~~--~~~~~---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 850 (967)
+.+...|.....+ +...+ +...|+.+|+++++ ..|+ ..++..++.++... ++...+.+...++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4566666666555 33322 36788888888888 5777 35555555544332 12344555555554
Q ss_pred HCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 851 LNG-LDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 851 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
... .+.++.++..++-.....|++++|...++++++ +.|+...|..++.++...|+.++|+..+++++.++|.+|++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 421 233567788888888888999999999999997 45778889999999999999999999999999999999985
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.011 Score=58.47 Aligned_cols=144 Identities=11% Similarity=0.064 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHH
Q 048794 699 VEELLKLYEEMSFRGCKPNTI-SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFE 777 (967)
Q Consensus 699 ~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 777 (967)
...|.+.-.+..+. .||.. .......++.+.|+..++-.+++.+.+..++|+. ...|....--+.++.-++
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i------a~lY~~ar~gdta~dRlk 316 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI------ALLYVRARSGDTALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH------HHHHHHhcCCCcHHHHHH
Confidence 34444444444443 33332 2222334455556666666666666655444432 122222222223333333
Q ss_pred HHHHC-CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 048794 778 EMLDY-GCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMV-GRVDDALHYFEELKLN 852 (967)
Q Consensus 778 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 852 (967)
++.+. ..+| +..+....+..-...|++..|..--+.... ..|....|..|+++-... |+..++.+++-+.+..
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 33211 0122 333444455555555666666555555554 356666666666655444 6666666666666643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.6e-06 Score=63.96 Aligned_cols=67 Identities=19% Similarity=0.142 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHhhcCCCcCCC
Q 048794 857 DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG-MVEEARKLAGGNCFVQP 924 (967)
Q Consensus 857 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p 924 (967)
++..|..++..+...|++++|+..|+++++. .+.+..++..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777777777777777777777764 2334477777777777777 67778877777777777
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.7e-06 Score=66.12 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRP---DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEAL 878 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 878 (967)
|++++|+.+++++++. .| +...+..++.+|.+.|++++|+.++++ .+.+ +.+......++.++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4455555555555442 22 223333445555555555555555544 2111 111223333455555555555555
Q ss_pred HHHHH
Q 048794 879 SLFDE 883 (967)
Q Consensus 879 ~~~~~ 883 (967)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00021 Score=73.89 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=50.8
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEA 877 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 877 (967)
+...++++.|+.+++++.+. .|+. ...++.++...++..+|.+++++++... +.+...+..-++.+...|+++.|
T Consensus 179 l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 33444455555555554442 2332 2224444444444445555555544321 22333444444444455555555
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhc
Q 048794 878 LSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAG 917 (967)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 917 (967)
..+.+++.+. .|.+...|..|+.+|...|++++|.-.++
T Consensus 254 L~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 254 LEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 5555555432 12222455555555555555555554444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.7e-06 Score=51.57 Aligned_cols=32 Identities=63% Similarity=1.123 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048794 152 GCGPDVVTYTVLIDALCTAGRLDQAKEIFLKM 183 (967)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 183 (967)
|+.||..+|+.+|.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00078 Score=58.86 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=70.7
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHHHH
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD---LKSYS 827 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~ 827 (967)
|+......++.+....|++.+|...|++...--+.-|......++.+....++...|..+++++.+. .|. .....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCchH
Confidence 4444445555566666666666666666554333344555555555555556666666666665552 222 22344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
.++++|...|++..|..-|+.+++. -|++......+..+.++|+.++|..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4556666666666666666665552 455555555555666666555554444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00078 Score=58.85 Aligned_cols=131 Identities=17% Similarity=0.127 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 048794 785 KPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISY 861 (967)
Q Consensus 785 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 861 (967)
.|+......|+....+.|++.+|...|++.+.--+..|......++.+.+..+++.+|...+++..+.+ | ++...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 567778888999999999999999999998874334456788899999999999999999999988743 3 44556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 862 NFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 862 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
..++.+|...|++.+|...++.+... -|++.....++..+.++|+..+|..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 77899999999999999999999874 567766667788888999877776655433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.2e-06 Score=50.75 Aligned_cols=31 Identities=48% Similarity=0.901 Sum_probs=14.3
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 223 YAADVVTYTIFVDALCKVGNVEEAFSILDLM 253 (967)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (967)
+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00015 Score=62.72 Aligned_cols=94 Identities=19% Similarity=0.122 Sum_probs=45.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLD--ADTISYNFM 864 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 864 (967)
+..++..+.+.|++++|+..|++++.. .|+ ...+..++.++.+.|++++|...++.++..... .....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 344444455555555555555555442 222 234444555555555555555555555432101 113344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048794 865 INGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 865 ~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+.++...|++++|.+.++++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 5555555555555555555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.3e-06 Score=62.04 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=48.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
...|++++|++.++++... .|.+..++..++.++.+.|++++|...+++++..+|+++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 4678888888888888864 45566888888888888888888888888888888888765
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00018 Score=75.11 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 048794 757 GPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCM 835 (967)
Q Consensus 757 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 835 (967)
...+..+...|++++|+..|+++++.. +.+...|..++.+|...|++++|+..++++++ ..|+ ...+..++.+|..
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHH
Confidence 345677888899999999999999874 33667899999999999999999999999998 4665 6788899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 836 VGRVDDALHYFEELKLNGLDADTISYNFM 864 (967)
Q Consensus 836 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 864 (967)
.|++++|+..|++++..+ +.+......+
T Consensus 83 lg~~~eA~~~~~~al~l~-P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLA-PGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999999853 2344444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.6e-05 Score=63.02 Aligned_cols=81 Identities=27% Similarity=0.481 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 048794 766 SGRLEEAKKLFEEMLDYGCK-PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 843 (967)
.|+++.|+.+++++.+..+. ++...+..++.+|.+.|++++|+.++++ .+ ..|. ......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 57899999999999886331 2445677789999999999999999988 43 3444 466667799999999999999
Q ss_pred HHHHHH
Q 048794 844 HYFEEL 849 (967)
Q Consensus 844 ~~~~~~ 849 (967)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 998864
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0002 Score=74.12 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=87.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMV 836 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 836 (967)
.++..+...++++.|+.+++++.+. .|+ ....++.++...++-.+|++++.+.++. .| +...+..-+..|...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 3455566677788888888888775 344 3444677777777778888888888764 44 355666667778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 837 GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 837 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
++++.|+.+.++++... +.+..+|..|+.+|...|++++|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888742 3356678888888888888888888877765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=67.20 Aligned_cols=102 Identities=15% Similarity=0.051 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
.+..++.++...|++++|+..|++++.....+ ...++..++.++...|++++|+..+++++.. .+.....+..++.+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHH
Confidence 44445555555555555555555554321111 1224455555555555555555555555532 12222444444444
Q ss_pred HH-------hcCCHH-------HHHHhhcCCCcCCCCcc
Q 048794 903 LG-------RAGMVE-------EARKLAGGNCFVQPSEF 927 (967)
Q Consensus 903 ~~-------~~g~~~-------~A~~~~~~~l~~~p~~~ 927 (967)
+. ..|+++ +|..++++++..+|++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 44 444433 44444444555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0003 Score=58.95 Aligned_cols=93 Identities=25% Similarity=0.252 Sum_probs=50.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 048794 792 NILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISYNFMIN 866 (967)
Q Consensus 792 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~ 866 (967)
...+.++-..|+.++|+.+|++.+..|..+. ...+..++..+...|++++|..++++..... +. +......++.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHH
Confidence 3455555666666666666666666554433 2345556666666666666666666655421 11 1222233444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048794 867 GLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~ 885 (967)
++...|+.++|++.+-..+
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5666666666666655544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=59.76 Aligned_cols=92 Identities=23% Similarity=0.301 Sum_probs=54.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
+..++..+...|++++|+..++++.+. .|+ ...+..++.++...|++++|.+.++++.... +.+...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 444555555666666666666666553 333 3455566666666666666666666666542 223345556666666
Q ss_pred hcCCHHHHHHHHHHHH
Q 048794 870 RSGRIEEALSLFDEMK 885 (967)
Q Consensus 870 ~~g~~~~A~~~~~~~~ 885 (967)
..|++++|...+..+.
T Consensus 80 ~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 80 KLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 6666666666666655
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00027 Score=59.26 Aligned_cols=95 Identities=21% Similarity=0.187 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHhHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD--TISYNFMINGLGRSGRIEEALSLFDEMKKRGISP---DLYTYNSL 899 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l 899 (967)
..+.++.++-..|+.++|+.+|++++..|+... ...+..++.++...|++++|..++++.... .|. +.....-+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHH
Confidence 467788999999999999999999998776654 457778999999999999999999999853 333 23445566
Q ss_pred HHHHHhcCCHHHHHHhhcCCC
Q 048794 900 ILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 900 ~~~~~~~g~~~~A~~~~~~~l 920 (967)
+.++...|+.++|..++-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 778899999999999987665
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00054 Score=63.49 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=76.4
Q ss_pred hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 048794 753 PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN--CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVL 829 (967)
Q Consensus 753 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 829 (967)
...+..++..+...|++++|+..|+++++....+. ...+..++.++...|++++|+..++++++ ..|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 34678888999999999999999999987533322 35889999999999999999999999998 4665 5778888
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 048794 830 VDCLCMVGRVDDALHYFEEL 849 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~ 849 (967)
+.++...|+...+...+..+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A 132 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH
Confidence 99999988866655544443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00054 Score=65.92 Aligned_cols=118 Identities=13% Similarity=0.130 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC---CHHHHHHH
Q 048794 770 EEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG---RVDDALHY 845 (967)
Q Consensus 770 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~ 845 (967)
+....-++.-+..+ +.|...|..|+.+|...|++..|...|.+..+ +.|+ ...+..++.++..+. ...++..+
T Consensus 139 ~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 139 EALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 33344445445543 33677888888888888888888888888877 3444 456666776665432 25577888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048794 846 FEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD 892 (967)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 892 (967)
+++++..+ +.+..+...|+..+...|++.+|...++.|++. .+|+
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~-lp~~ 260 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL-LPAD 260 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCC
Confidence 88888754 335667777788888888888888888888864 4444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00015 Score=71.02 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=50.7
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcC
Q 048794 799 GKTGDVETACELFKQMIKGGIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLNG--LDADTISYNFMINGLGRSG 872 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 872 (967)
.+.|++++|+..|++.++. .|+ ..+++.++.+|...|++++|...|+++++.. .+..+.++..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 4456666666666666663 343 2456666666666666666666666666421 1113445555666666666
Q ss_pred CHHHHHHHHHHHHH
Q 048794 873 RIEEALSLFDEMKK 886 (967)
Q Consensus 873 ~~~~A~~~~~~~~~ 886 (967)
++++|...|+++++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666664
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.055 Score=54.81 Aligned_cols=242 Identities=14% Similarity=0.114 Sum_probs=159.3
Q ss_pred HHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcC
Q 048794 528 WFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNG 607 (967)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (967)
-++++...-.+-.+..|.....-+...++-+.|+.... .|
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~----------------------------------------rg 328 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVE----------------------------------------RG 328 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHH----------------------------------------hc
Confidence 44556666667777777777777777777777766654 45
Q ss_pred CCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCcCHh
Q 048794 608 ICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLL---EVHATEMGLDLFTTMKNAGCAPDIS 684 (967)
Q Consensus 608 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~ 684 (967)
.+..+++...+...|.-.++.+....+|++++.... .-..++..-. ..|+++.-.+++-+-. ..=..
T Consensus 329 ~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~------r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~ 398 (660)
T COG5107 329 IEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLK------RKYSMGESESASKVDNNFEYSKELLLKRI----NKLTF 398 (660)
T ss_pred ccCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHH------HHHhhhhhhhhccccCCccccHHHHHHHH----hhhhh
Confidence 566667777788888889999999999988854210 0011111111 1222322222111111 12345
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHH
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRG-CKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGL 763 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 763 (967)
+|...++...+..-.+.|..+|-++.+.+ ..++.....+.+. +..+|+...|..+|+--+.. ++.+...-......+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E-~~~~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE-YYATGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHH-HHhcCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 66677777777777899999999998876 3444455556555 45578889999999877665 333443344556677
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKPN--CVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLK 824 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 824 (967)
...++-+.|..+|+...+. +..+ ...|..++..-.+-|+...+..+-+++.+ +.|...
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen 536 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQEN 536 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHh
Confidence 8889999999999977653 2223 45888899888899999999999999887 466643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0073 Score=59.05 Aligned_cols=70 Identities=11% Similarity=-0.048 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHH---HhHHHHHHhcCChhHHHHHHHHHHhhcCCCcc
Q 048794 507 VLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITL---CTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAE 576 (967)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 576 (967)
....-..+..+...|++++|++.|+++....|.++... ..++.++.+.++++.|+..+++.+...|.++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 33333445556677888888888888887766665443 55666677777777777777776666554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0031 Score=61.59 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=43.7
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS---HNIVISGLVKSNSIDKAMDLFYNLVSG 747 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 747 (967)
+...+...+..+...|++++|+..|+++....+.+ ..+ ...++.++.+.+++++|...+++.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 44555566667777888888888888887764222 222 245566677777777777777777776
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.096 Score=56.11 Aligned_cols=206 Identities=14% Similarity=0.147 Sum_probs=126.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHHhcCChHHHHHHHHHHHhCCC
Q 048794 119 RPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLI----------DALCTAGRLDQAKEIFLKMKASSH 188 (967)
Q Consensus 119 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~~~ 188 (967)
.|.+..|..+.......-.++-|...|-+.... +....-..|- ....--|++++|.++|-++-..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 578888988888777777788888877665542 2221111111 11223588999999988875432
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048794 189 QPDQVTYITLLDKFSDCGNIEVVKEFWSQMVAD-GYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNT 267 (967)
Q Consensus 189 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 267 (967)
..+..+.+.||+-...++++.--.. .-..-..+++.+...+.....|++|.+.+...... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 3455667788888777766431110 00112457788888888888888888888765432 23
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 048794 268 LICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGR 347 (967)
Q Consensus 268 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 347 (967)
.+.++.+...+++...+... .+.+......+..++...|.-+.|.+.+-+.-. | ...+..+...++
T Consensus 828 ~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHH
Confidence 44555555555554444333 244555666777778788877777776644221 1 234556677777
Q ss_pred HHHHHHHHHHHH
Q 048794 348 IGEAKTIFNGLK 359 (967)
Q Consensus 348 ~~~a~~~~~~~~ 359 (967)
+.+|.++-+...
T Consensus 894 W~~avelaq~~~ 905 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHhcc
Confidence 777777665543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=55.39 Aligned_cols=62 Identities=24% Similarity=0.330 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG-RVDDALHYFEELKL 851 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 851 (967)
..+|..++..+...|++++|+..|+++++ ..|+ ...+..++.++...| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34555555555555556666666655555 3444 345555555555555 45555555555554
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0031 Score=68.95 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 770 EEAKKLFEEMLDYG-CKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 770 ~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
..+.+..+++.... .+.+..+|..++..+...|++++|...+++++. ..|+...|..++.++...|+.++|.+.|++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444443321 123445677777666677888888888888887 457777788888888888888888888888
Q ss_pred HHHCCCCCCHHHH
Q 048794 849 LKLNGLDADTISY 861 (967)
Q Consensus 849 ~~~~~~~~~~~~~ 861 (967)
+... +|...+|
T Consensus 479 A~~L--~P~~pt~ 489 (517)
T PRK10153 479 AFNL--RPGENTL 489 (517)
T ss_pred HHhc--CCCCchH
Confidence 8764 4544444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0005 Score=70.59 Aligned_cols=148 Identities=19% Similarity=0.156 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 804 VETACELFKQMIKG-GIRPD-LKSYSVLVDCLCMV---------GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 804 ~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
.+.|+.+|.++++. ..+|+ ...|..++.++... ....+|.++..++++.+ +.|+.+...++.++...|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45566666666621 24555 34555555544321 12345666666666654 446666666777767777
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-c-cce-eeeccCCCcccccch
Q 048794 873 RIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-S-ELQ-VIYAENPRATSLSHK 948 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~-~l~-~~~~~~g~~~~~~~~ 948 (967)
+++.|...++++.. +.||. .+|...++.+...|+.++|.+.++++++++|.--.+ + .+. ..|... ..+++.+-
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 77777777777764 44443 666677777777777777777777777777776665 2 222 234433 24444554
Q ss_pred hhhhhcc
Q 048794 949 HCEYLAS 955 (967)
Q Consensus 949 ~~~~~~~ 955 (967)
++.+..+
T Consensus 430 ~~~~~~~ 436 (458)
T PRK11906 430 YYKETES 436 (458)
T ss_pred Hhhcccc
Confidence 4444433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.9e-05 Score=57.62 Aligned_cols=64 Identities=17% Similarity=0.008 Sum_probs=41.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 865 INGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 865 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
..+|.+.+++++|.++++.++.. .|.+...+...+.++...|++++|...++++++.+|+++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 34566667777777777776653 23334666666777777777777777777777777766654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0043 Score=63.10 Aligned_cols=172 Identities=16% Similarity=0.118 Sum_probs=103.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYG---CKPNCVIYNILINGFGK---TGDVETACELFKQMIKGGIRPDLKSYSVL 829 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 829 (967)
...+.-+|....+++..+++.+.+.... +.....+-...+.++.+ .|+.++|++++..++.....++..++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3445556777778888888887776531 11122234445556666 77888888888886555455667777777
Q ss_pred HHHHHh----c-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH---HHHH-HcCC-CC
Q 048794 830 VDCLCM----V-----GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGR-IE---EALSLF---DEMK-KRGI-SP 891 (967)
Q Consensus 830 ~~~~~~----~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~~-~~~~-~~ 891 (967)
|++|.. . ...++|+..|.+.-+. +|+...=.+++-.+...|. ++ +..++. ..+. +.|. .+
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 777632 1 1267788888887753 3433222223333444442 11 222222 1111 2232 23
Q ss_pred CH--HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 892 DL--YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 892 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.. ..+..++.+..-.|++++|++.+++++++.|+.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 33 344578888888999999999999999999988874
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.014 Score=54.43 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=78.9
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----CCCCCHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKG-----GIRPDLKSYSVL 829 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~~~l 829 (967)
+.+.++.++...|.+.-....+.+..+...+.++.....++.+-.+.|+.+.|...|++..+. +...+..+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445556666666666666666666666554555666666666666667777676666655442 222223334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+.++.-++++.+|...+.++...+ +.++...+.-+-++.-.|+..+|++.++.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555556666777777777766543 34555555555555566777777777777764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00029 Score=52.55 Aligned_cols=56 Identities=32% Similarity=0.488 Sum_probs=30.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 794 LINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 794 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
++..+...|++++|++.|+++++. .|+ ...+..++.++...|++++|..+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555553 343 34555555555555555555555555554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.011 Score=56.43 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCHHHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRGISPDL---YTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~ 913 (967)
.++..|.+.|.+..|..-++.+++. .|... ..+..++.++.+.|..+.|.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3667777888888888888877754 33322 45566777777777766443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.064 Score=53.74 Aligned_cols=223 Identities=23% Similarity=0.203 Sum_probs=123.2
Q ss_pred CChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhcHHHHHHHHHcCCCHHHHHH
Q 048794 697 GRVEELLKLYEEMSFRGCKP-NTISHNIVISGLVKSNSIDKAMDLFYNLVSG-GFSPTPCTYGPLIDGLSKSGRLEEAKK 774 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 774 (967)
+....+...+.......... ...........+...+....+...+...... ........+...+..+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444444332110 1334455555556666666666666555542 123333445555566666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 775 LFEEMLDYGCKPNCVIYNILIN-GFGKTGDVETACELFKQMIKGGIRP----DLKSYSVLVDCLCMVGRVDDALHYFEEL 849 (967)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 849 (967)
.+.........+ ......... ++...|++++|...+++... ..| ....+......+...++++++...+.++
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 666666542221 122222222 56666777777777777655 233 1233444444456666777777777776
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 850 KLNGLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 850 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
.... +. ....+..++..+...|+++.|...+...... .|+ ...+..++..+...|+++++...+.+++..+|.
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 194 LKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6542 22 3455666667777777777777777777642 233 345555555555556677777777777777765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0017 Score=60.21 Aligned_cols=137 Identities=16% Similarity=0.130 Sum_probs=77.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 048794 792 NILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN-----GLDADTISYNFMIN 866 (967)
Q Consensus 792 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~ 866 (967)
+.++.++...|.+.-.+.++.++++.+.+-+......|+++-.+.|+.+.|..+++.+.+. ++.....+..+.+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4455555566666666777777666432223455566666667777777777777654321 11222223333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++.-.+++.+|...+.+.... -+-++...++-+-++.-.|+..+|++..+.+....|.....
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~-D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRM-DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred heecccchHHHHHHHhhcccc-CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 555555666666666666642 11223334455555555667777777777777666666654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00065 Score=64.56 Aligned_cols=99 Identities=25% Similarity=0.316 Sum_probs=69.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLN-GLDA-DTISYNF 863 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~ 863 (967)
.|+ .+.-+...|++.+|...|...++. -|+ ..++++|+.++...|++++|...|..+.+. +-.| .++.+..
T Consensus 144 ~Y~-~A~~~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYN-AALDLYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 344 344455677788888888888874 333 356778888888888888888888887752 1112 4577778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048794 864 MINGLGRSGRIEEALSLFDEMKKRGISPD 892 (967)
Q Consensus 864 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 892 (967)
|+.+..+.|+.++|...|+++.+. .|..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~-YP~t 248 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR-YPGT 248 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH-CCCC
Confidence 888888888888888888888764 4433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.019 Score=54.77 Aligned_cols=63 Identities=19% Similarity=0.129 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--CHhhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 048794 650 MYNYLIHGLLEVHATEMGLDLFTTMKNAGCAP--DISTYNLLLDGYGKSGRVEELLKLYEEMSFR 712 (967)
Q Consensus 650 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 712 (967)
.+...+..+...|++.+|+..|+.+....+.. ...+...++.++.+.|++++|+..+++.+..
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444455566666777777776666652211 2334455666666677777777777766655
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0004 Score=60.55 Aligned_cols=93 Identities=11% Similarity=-0.012 Sum_probs=69.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
....+.-+...|++++|..+|.-+.- ..| +..-+..|+.++...|++++|+..|..+...+ ..|+..+...+.+|.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHH
Confidence 33444445688899999999888766 344 35567788888888889999999988877543 234444666888888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048794 870 RSGRIEEALSLFDEMKK 886 (967)
Q Consensus 870 ~~g~~~~A~~~~~~~~~ 886 (967)
..|+.+.|...|..+.+
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999999888885
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0036 Score=62.81 Aligned_cols=100 Identities=15% Similarity=0.069 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILN 902 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~ 902 (967)
.++.+++-++.+.+++.+|++.-.+++..+ +++..++..-+.++...|+++.|+..|+++++ +.|++ .+-..++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 356677777788888888888888887765 55777777778888888888888888888875 45554 555566655
Q ss_pred HHhcCCHHH-HHHhhcCCCcCCCCc
Q 048794 903 LGRAGMVEE-ARKLAGGNCFVQPSE 926 (967)
Q Consensus 903 ~~~~g~~~~-A~~~~~~~l~~~p~~ 926 (967)
-.+...+.+ ..++|.+.+..-++.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Confidence 555544443 366777666555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0024 Score=62.72 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=42.5
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcC
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKPN--CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD----LKSYSVLVDCLCMVG 837 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 837 (967)
.+.|++++|+..|+.+++..+... ..++..++.+|...|++++|+..|+++++. .|+ ..++..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcC
Confidence 344555555555555555421110 124555555555555555555555555542 222 334444555555555
Q ss_pred CHHHHHHHHHHHHH
Q 048794 838 RVDDALHYFEELKL 851 (967)
Q Consensus 838 ~~~~A~~~~~~~~~ 851 (967)
++++|...|+++++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.23 Score=50.78 Aligned_cols=121 Identities=19% Similarity=0.242 Sum_probs=69.8
Q ss_pred HHHcCC-hhHHHHHHHHHHHCCCCCChhhHHHHHH----HH---HhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHH
Q 048794 377 YSKVGQ-VDEAVTLLSEMVENGCEPDVIVMNTLID----TL---YKADRVDEAWEMFCRMKDMKLAP----TVVTYNTLL 444 (967)
Q Consensus 377 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~---~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l~ 444 (967)
+-+.|. -+.|..+++.+.+-. +-|..+-+.+.. .| .....+..-..+-+-+.+.|++| +...-|.+.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 334454 677777777777642 233333333222 12 12233444444444455566654 233444444
Q ss_pred HH--HHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 048794 445 SG--LGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTP 500 (967)
Q Consensus 445 ~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (967)
++ +...|++.++.-.-.-+.+ +.|++.++..+.-+.....++++|..++..+..
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 43 3467888877765554544 567888888887777778888888888877643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.03 Score=56.17 Aligned_cols=225 Identities=21% Similarity=0.106 Sum_probs=163.6
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHH
Q 048794 731 SNSIDKAMDLFYNLVSGGFS-PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY-GCKPNCVIYNILINGFGKTGDVETAC 808 (967)
Q Consensus 731 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 808 (967)
.+....+...+......... ............+...+++..+...+...... ........+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34556666666666655322 13456777788899999999999999988752 12445567888888888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 809 ELFKQMIKGGIRPDLKSYSVLVD-CLCMVGRVDDALHYFEELKLNGL--DADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 809 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
..+.........+ ......... ++...|++++|...++++..... ......+......+...++++.|...+..+.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999998843222 223333444 78999999999999999976321 1234455556666788999999999999999
Q ss_pred HcCCCC-CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchhhhhhcccc
Q 048794 886 KRGISP-DLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCEYLASSC 957 (967)
Q Consensus 886 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 957 (967)
.. .+. ....+..++..+...+++++|...+.+++...|+.... ..++..+...|+++++.....+.+..++
T Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 64 344 36788899999999999999999999999999994443 5677777766667776664444444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00056 Score=51.59 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
..|++++|+++|++++... +.+..++..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555432 2244444455555555555555555555554
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0049 Score=64.28 Aligned_cols=124 Identities=16% Similarity=0.143 Sum_probs=95.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048794 362 GFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVEN--GCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVT 439 (967)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 439 (967)
+.+.+......++..+....+++.+..++-..... ....-..+..++++.|...|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34566667777777777777888888888887765 2223344667889999999999999999888888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 048794 440 YNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKN 485 (967)
Q Consensus 440 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 485 (967)
++.++..+.+.|++..|.+++..|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888777666666666555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.38 Score=51.81 Aligned_cols=207 Identities=11% Similarity=0.077 Sum_probs=117.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 399 EPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDM-KLAP--------TVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCF 469 (967)
Q Consensus 399 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 469 (967)
.|.+..|..+.......-.++.|...|-+..+. |++. +...-.+=+.+| -|++++|.+++-+|...+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 466677777776665555666666666554331 2110 111112222233 378899998887775542
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC-CCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHH
Q 048794 470 PNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRN-CWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLL 548 (967)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 548 (967)
..+..+.+.|++-...++++.--.-. ...-...++.++..+.....|++|.++|..... ....+
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ 829 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQI 829 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHH
Confidence 23556677888887777776532211 111245778888888888889999988876543 12234
Q ss_pred HHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccH
Q 048794 549 PGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKA 628 (967)
Q Consensus 549 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 628 (967)
.++....++++-..+. ...|.+...+-.+++++.+.|--
T Consensus 830 ecly~le~f~~LE~la-----------------------------------------~~Lpe~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLA-----------------------------------------RTLPEDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHHHHHHhhhhHHHHH-----------------------------------------HhcCcccchHHHHHHHHHhhchH
Confidence 4444444444322221 22355556666777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048794 629 LAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMK 675 (967)
Q Consensus 629 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 675 (967)
++|.+.|-+.- .+ ..-...|...+++.+|.++-++..
T Consensus 869 ~qAV~a~Lr~s-----~p-----kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 869 DQAVEAYLRRS-----LP-----KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHhcc-----Cc-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77777665541 11 122344556666666666555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.016 Score=50.87 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=61.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVG 837 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 837 (967)
..+--+...|++++|..+|.-+.-.++ -+..-|..|+.++...+++++|+..|..+...+ .-|.......+.++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 344445667777777777777765432 255566777777777777777777777766532 223445666777777777
Q ss_pred CHHHHHHHHHHHHH
Q 048794 838 RVDDALHYFEELKL 851 (967)
Q Consensus 838 ~~~~A~~~~~~~~~ 851 (967)
+.+.|...|+.+++
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777777776
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.004 Score=64.95 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048794 84 KPSLKTYSALMVAAGKRRNIKTVMNLLEEMERL--GLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYT 161 (967)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 161 (967)
+.+......+++.+...-+.+.+..++-..... ....-..+..++++.|...|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344444444444444444444454444444432 111112233344555555555555555554444445555555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 048794 162 VLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLD 200 (967)
Q Consensus 162 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 200 (967)
.|+..+.+.|++..|.++...|...+...+..|+...+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~ 181 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALY 181 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 555555555555555555444443333333333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00037 Score=69.59 Aligned_cols=92 Identities=12% Similarity=-0.028 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeec
Q 048794 859 ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYA 937 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~ 937 (967)
.++++|+-++.+.+++.+|+....+++.. -++|.-.++.-+.++...|+++.|+..|+++++++|+|-.+ ..|+.+-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLEL-DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45778999999999999999999999975 35566888999999999999999999999999999999887 57777777
Q ss_pred cCCCcccccchhhh
Q 048794 938 ENPRATSLSHKHCE 951 (967)
Q Consensus 938 ~~g~~~~~~~~~~~ 951 (967)
+.-++.+.+++.+.
T Consensus 337 k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 337 KIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00057 Score=43.13 Aligned_cols=33 Identities=48% Similarity=0.873 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 048794 159 TYTVLIDALCTAGRLDQAKEIFLKMKASSHQPD 191 (967)
Q Consensus 159 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 191 (967)
+|+.++.+|++.|++++|.++|.+|...|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666667777777777777777666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0018 Score=65.09 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=96.4
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK-TGDVETACELFKQMIKGGIRPDLKSYSVLVDCL 833 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 833 (967)
+|..++....+.+..+.|..+|+++.+.+ ..+..+|...+.+... .++.+.|..+|+..++. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56677788888888999999999998542 3355677777777444 56777799999998885 344567778888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 834 CMVGRVDDALHYFEELKLNGLDAD---TISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
...|+.+.|..+|++++.. +.++ ...|..+++.-.+.|+.+....+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999998864 3332 357888888888899999999998888864
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.43 Score=51.06 Aligned_cols=173 Identities=16% Similarity=0.059 Sum_probs=102.6
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCL 833 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 833 (967)
.+|...++.-...|+++.+.-.|+++.-. +..=...|...+......|+.+-|..++.+..+--.+........-+...
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 45666667777788888888888887642 11122366666666666678777777777766532222233333334455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCCH--HhHHHHHHHHH-hc
Q 048794 834 CMVGRVDDALHYFEELKLNGLDADT-ISYNFMINGLGRSGRIEEAL---SLFDEMKKRGISPDL--YTYNSLILNLG-RA 906 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~--~~~~~l~~~~~-~~ 906 (967)
...|+++.|..+++.+.+. . |.. .+-..-+....+.|..+.+. +++.........++. ..+...+.... -.
T Consensus 377 e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 6677888888888887764 2 433 23333455567777777777 444444321111111 12223333322 34
Q ss_pred CCHHHHHHhhcCCCcCCCCcccc
Q 048794 907 GMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 907 g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++.+.|...+.++.+..|++...
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~ 477 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVL 477 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHH
Confidence 67888888888888888888775
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00013 Score=48.88 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccce
Q 048794 894 YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQ 933 (967)
Q Consensus 894 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~ 933 (967)
.++..++..+...|++++|++.++++++.+|+|+.+ ..||
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 345566677777777777777777777777777665 3444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00056 Score=42.78 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 048794 159 TYTVLIDALCTAGRLDQAKEIFLKMKASSHQP 190 (967)
Q Consensus 159 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 190 (967)
+|+.++.+|.+.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555544443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.015 Score=58.55 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=85.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 048794 404 VMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSG-LGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCL 482 (967)
Q Consensus 404 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (967)
+|..++...-+.+..+.|+.+|.++.+.+. .+...|...... +...++.+.|.++|+...+. .+.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455566666666667777777777765432 233334333333 22346666688888777765 455667777777777
Q ss_pred HhcCCHHHHHHHHHhhccCCCCCCH----HHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCCh
Q 048794 483 CKNEEVDLAMKMLYEMTPRNCWPDV----LTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDH 541 (967)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 541 (967)
...++.+.|+.+|++.+.. .+.. .+|...+..-.+.|+.+....+.+++.+..+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 7778888888888887766 2233 4777777777788888888888888887655533
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00077 Score=42.49 Aligned_cols=31 Identities=35% Similarity=0.681 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCC
Q 048794 55 YNGFIHFILQSGFCREALAVYKRVVSEGIKP 85 (967)
Q Consensus 55 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 85 (967)
|+.++..|.+.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3444444444444444444444444444333
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.06 Score=52.93 Aligned_cols=228 Identities=12% Similarity=0.060 Sum_probs=145.0
Q ss_pred HHhhccHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---cCHhhHHHHHHHHHc
Q 048794 622 FCRQKKALAAKDLFVKFTENLGVT-STLEMYNYLIHGLLEVHATEMGLDLFTTMKNA--GCA---PDISTYNLLLDGYGK 695 (967)
Q Consensus 622 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~ 695 (967)
+..+.+.++|...+.+.+.+.... .....+..+..++++.|.+++++..--..++- ..+ .--.++..+...+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677776666655433222 22345666777888888888776443222211 001 112345566666766
Q ss_pred cCChHHHHHHHHHHHhCC-CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChhcHHHHHHHHHcC
Q 048794 696 SGRVEELLKLYEEMSFRG-CKP---NTISHNIVISGLVKSNSIDKAMDLFYNLVSGG-----FSPTPCTYGPLIDGLSKS 766 (967)
Q Consensus 696 ~g~~~~A~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 766 (967)
.-++.+++.+-..-.... -.+ --.....+..++...+.++.+++.|+.+...- ......++..+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 677777776655544321 111 11234556777788888999999999887651 112335788899999999
Q ss_pred CCHHHHHHHHHHHHHC----CCCCCHH------HHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHH
Q 048794 767 GRLEEAKKLFEEMLDY----GCKPNCV------IYNILINGFGKTGDVETACELFKQMIK----GGIRPD-LKSYSVLVD 831 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~----~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~ 831 (967)
.|+++|.-+..++.+. ++. |.. +...++-++...|...+|.+.-++..+ .|..|- ......+++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 9999998887776542 222 222 334456667788888888888887654 454443 345667899
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048794 832 CLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 832 ~~~~~g~~~~A~~~~~~~~ 850 (967)
+|...|+.+.|..-|+.+.
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 9999999999999998875
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00084 Score=41.94 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 229 TYTIFVDALCKVGNVEEAFSILDLMRGEGIL 259 (967)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 259 (967)
+|+.++.+|++.|+++.|..+|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0081 Score=51.34 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLN-GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL----YTYN 897 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~ 897 (967)
..++.-+....+.|++++|.+.|+.+... ...+ ...+-..|+.+|.+.|++++|...+++.++. .|+. .++.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCccHHHH
Confidence 34445555555666666666666665542 1111 3445555666666666666666666666642 2221 3333
Q ss_pred HHHHHHHhcCC---------------HHHHHHhhcCCCcCCCCcccc
Q 048794 898 SLILNLGRAGM---------------VEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 898 ~l~~~~~~~g~---------------~~~A~~~~~~~l~~~p~~~~~ 929 (967)
..+-+.+.... ..+|..-|++++...|++..+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 33333333333 668888888888888888764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0033 Score=48.21 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=27.2
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 797 GFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+|.+.+++++|++.+++++.. .|+ ...+...+.++...|++++|...++++++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555555555555552 333 34444555555555555555555555554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.015 Score=55.53 Aligned_cols=92 Identities=23% Similarity=0.247 Sum_probs=43.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDYGCKP--NCVIYNILINGFGKTGDVETACELFKQMIKG-GIRPD-LKSYSVLVDCLCM 835 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~ 835 (967)
+-.+.+.|++.+|...|...++..+.- ....+.+|+.++..+|++++|...|..+.+. ...|. ...+.-|+.+..+
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 333444455555555555555542110 1114455555555555555555555555542 11111 2445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 048794 836 VGRVDDALHYFEELKL 851 (967)
Q Consensus 836 ~g~~~~A~~~~~~~~~ 851 (967)
.|+.++|...|+++.+
T Consensus 228 l~~~d~A~atl~qv~k 243 (262)
T COG1729 228 LGNTDEACATLQQVIK 243 (262)
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5555555555555554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0018 Score=50.40 Aligned_cols=61 Identities=30% Similarity=0.373 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKL----NGLD-A-DTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
++..++.+|...|++++|+.+|+++++ .|.. | ...++..++.++...|++++|+++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555556666666666555542 1100 1 12345555666666666666666666554
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0018 Score=50.48 Aligned_cols=62 Identities=21% Similarity=0.446 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKG--GIR---PD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+++.++.+|...|++++|+..|+++++. ... |+ ..++..++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777777777777888888877777641 011 22 35667778888888888888888877764
|
... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.059 Score=49.60 Aligned_cols=102 Identities=9% Similarity=0.046 Sum_probs=47.6
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHC--CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh------
Q 048794 828 VLVDCLCMV-GRVDDALHYFEELKLN--GL---DADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYT------ 895 (967)
Q Consensus 828 ~l~~~~~~~-g~~~~A~~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------ 895 (967)
.++.+|... .++++|+..|+.+-+. +- .....++...+..-...|++.+|+++|+++....+..+---
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344444433 4555566665555431 10 11123344444445566666666666666654323322111
Q ss_pred HHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 896 YNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 896 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+..-+-++....+.-.+...+++..+++|.-...
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 1122222223355555666666666666665553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.52 Score=48.18 Aligned_cols=137 Identities=13% Similarity=0.172 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHH-HHHHHH
Q 048794 403 IVMNTLIDTLYKADRVDEAWEMFCRMKDMK-LAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVT-FNTLLH 480 (967)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 480 (967)
.+|...+....+..-.+.|+.+|-+..+.+ +.+++..+++++..++ .|+...|..+|+--... .||... ....+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345556666667777888999998888877 5667788888887665 58888888888775553 344443 344556
Q ss_pred HHHhcCCHHHHHHHHHhhccCCC-CCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChh
Q 048794 481 CLCKNEEVDLAMKMLYEMTPRNC-WPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHI 542 (967)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 542 (967)
-+...++-+.|+.+|+...++-- ..-..+|..++..-..-|+...+..+=+++....|....
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 66778888889999886655410 012456777777777788888888888888776665443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.028 Score=55.14 Aligned_cols=286 Identities=16% Similarity=0.097 Sum_probs=172.1
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCC---hhhHHHHHHHHHhc
Q 048794 659 LEVHATEMGLDLFTTMKNAG--CAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRG--CKPN---TISHNIVISGLVKS 731 (967)
Q Consensus 659 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~ 731 (967)
....+.++|+..+...+.+- ...-..++..+..+..+.|++++++..--..+... ...+ ..++..+..++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888777776541 01122345556667788888888775532221110 0111 12445555556666
Q ss_pred CCHHHHHHHHHHHHhC-CCCC---ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHhccC
Q 048794 732 NSIDKAMDLFYNLVSG-GFSP---TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK---P--NCVIYNILINGFGKTG 802 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~ 802 (967)
.++.+++.+-...... |..+ -......++.++...+.++.+++.|+.+.+.... | ...++..++..+.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 6666666665544443 2222 1134556788888999999999999998763211 1 2337899999999999
Q ss_pred CHHHHHHHHHHHHhC--CCC-CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHH
Q 048794 803 DVETACELFKQMIKG--GIR-PD------LKSYSVLVDCLCMVGRVDDALHYFEELK----LNGLDA-DTISYNFMINGL 868 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~--~~~-p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~-~~~~~~~l~~~~ 868 (967)
++++|+-+..++.+. .+. .| ....+.|+-++...|..-.|.+.-+++. ..|-.+ -......++++|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999999888887651 112 12 1234677778888898888888877765 344233 233556789999
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCCCC---HHhHHHHHHHHHhcCCH-----HHHHHhhcCCCcCCCCc----ccc--c-c
Q 048794 869 GRSGRIEEALSLFDEMKKR--GISPD---LYTYNSLILNLGRAGMV-----EEARKLAGGNCFVQPSE----FVS--S-E 931 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~-----~~A~~~~~~~l~~~p~~----~~~--~-~ 931 (967)
...|+.+.|..-|+++... ++... ..++...+..+....-. =+|+++-++++++...- .+. + .
T Consensus 257 R~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcr 336 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCR 336 (518)
T ss_pred HhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999988621 11111 12333333333221111 23555555555443222 222 2 6
Q ss_pred ceeeeccCCCccc
Q 048794 932 LQVIYAENPRATS 944 (967)
Q Consensus 932 l~~~~~~~g~~~~ 944 (967)
++.+|-..|.-++
T Consensus 337 la~iYrs~gl~d~ 349 (518)
T KOG1941|consen 337 LASIYRSKGLQDE 349 (518)
T ss_pred HHHHHHhccchhH
Confidence 8899988888777
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.014 Score=46.98 Aligned_cols=72 Identities=19% Similarity=0.374 Sum_probs=33.1
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 048794 61 FILQSGFCREALAVYKRVVSEGI-KPSLKTYSALMVAAGKRR--------NIKTVMNLLEEMERLGLRPNVYTFTICIRI 131 (967)
Q Consensus 61 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (967)
-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-.++.+|++|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33333444444555555544444 444455554444433221 123344455555544555555555554444
Q ss_pred H
Q 048794 132 L 132 (967)
Q Consensus 132 ~ 132 (967)
+
T Consensus 114 L 114 (120)
T PF08579_consen 114 L 114 (120)
T ss_pred H
Confidence 4
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.68 Score=47.57 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=36.9
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYN 862 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 862 (967)
+..+|++.++.-.-.=+.+ +.|+..++..+|-++...+++++|..+++. ++|+..+++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~d 529 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRD 529 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHH
Confidence 3456777776654444444 667777777777777777777777777665 355554444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.064 Score=55.71 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhC-CC-CCChhcHHHHHHHHHcC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048794 734 IDKAMDLFYNLVSG-GF-SPTPCTYGPLIDGLSKS---------GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG 802 (967)
Q Consensus 734 ~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 802 (967)
.+.|+.+|.++++. .. +.....|..++.++... .+..+|.+.-+++.+.+ +.|..+...++.+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45566667776632 11 22234555555544332 22345555666666654 235566666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHH
Q 048794 803 DVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADT---ISYNFMINGLGRSGRIEEAL 878 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~ 878 (967)
+++.|+..|+++.. ..|| ..+++..+..+...|+.++|.+.++++++. +|.. ......++.|+.. ..++|+
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 66667777776666 4565 456666666666667777777776666653 3422 2222333344433 345566
Q ss_pred HHHHH
Q 048794 879 SLFDE 883 (967)
Q Consensus 879 ~~~~~ 883 (967)
++|-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 55543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.27 Score=45.47 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=9.0
Q ss_pred HcCCCHHHHHHHHHHHHH
Q 048794 764 SKSGRLEEAKKLFEEMLD 781 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~ 781 (967)
...++++.|+++|+++..
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.83 E-value=6.4e-05 Score=46.48 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=17.8
Q ss_pred hcCCCcCCCCcccc-ccceeeeccCCCccccc
Q 048794 916 AGGNCFVQPSEFVS-SELQVIYAENPRATSLS 946 (967)
Q Consensus 916 ~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~ 946 (967)
++++++++|+|+.+ +.||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555566666665 45666666666655543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00061 Score=42.59 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc
Q 048794 894 YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 894 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 926 (967)
.++..++.++...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.023 Score=45.75 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=32.9
Q ss_pred HhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048794 28 SLKGGLRRASFALEKMRAAGF-VLNAYSYNGFIHFILQSG--------FCREALAVYKRVVSEGIKPSLKTYSALMVAA 97 (967)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (967)
...+++...-.+|..+++.|+ .|+..+|+.++....+.. +.-+++.+|+.|...+++|+..+|+.++..+
T Consensus 36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 333555555555555555554 445555554444443321 1223444555555545555555555555444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.38 Score=49.43 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=37.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRG---CKPNTISHNIVISGLVK---SNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
.++-.|....+++.-+.+++.+.... +..........+.++.+ .|+.++|++++..++.....+++.++..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445666677777777777666531 00111122233334444 5556666666555444433444445555544
Q ss_pred HH
Q 048794 762 GL 763 (967)
Q Consensus 762 ~~ 763 (967)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.29 Score=45.64 Aligned_cols=128 Identities=12% Similarity=0.041 Sum_probs=73.9
Q ss_pred hccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC-HHHHHHHHHHH
Q 048794 799 GKTGDVETACELFKQMIKG--GIRPD---LKSYSVLVDCLCMVGRVDDALHYFEELK----LNGLDAD-TISYNFMINGL 868 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~-~~~~~~l~~~~ 868 (967)
....++++|+++|++...- .-.-+ ...+....+++.+..++++|-..+.+-. ...--++ -..+...+-++
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 3556778888888876541 00111 2334455677788888888776666532 1111122 23455555566
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcc
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPD---LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
....++..|..+++...+.+-..+ ..+...|+.. +..|+.+++.+++.--+-.+=+|-
T Consensus 201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~sp~~r~MDne 261 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLSSPTVRNMDNE 261 (308)
T ss_pred hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHcChHhhhhhHH
Confidence 677789999999988664322222 2444455443 356788888888875544333333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0026 Score=38.64 Aligned_cols=28 Identities=36% Similarity=0.740 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 048794 159 TYTVLIDALCTAGRLDQAKEIFLKMKAS 186 (967)
Q Consensus 159 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 186 (967)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3455555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.49 Score=53.09 Aligned_cols=253 Identities=13% Similarity=0.115 Sum_probs=159.5
Q ss_pred HHhcCChHHHHHHHHHHHH-------cCCCcCHhhHHHHHHHHHccC-----ChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048794 658 LLEVHATEMGLDLFTTMKN-------AGCAPDISTYNLLLDGYGKSG-----RVEELLKLYEEMSFRGCKPNTISHNIVI 725 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 725 (967)
+....+.+.|+.+|+.+.+ .+ ...+.+.++.+|.+.. +.+.|+.+|.++...| .|+ ....++
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~--a~~~lg 332 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPD--AQYLLG 332 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-Cch--HHHHHH
Confidence 4467789999999988876 44 3345667788887753 6677999999998876 334 334455
Q ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 726 SGLVKSN---SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGF 798 (967)
Q Consensus 726 ~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (967)
.++.... +...|..+|..+...|..+ ++..++.+|.. .-+.+.|..+++++.+.| .|....-......+
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEY 408 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHH
Confidence 5554433 5789999999999876433 34444444432 347889999999999876 22212111122223
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH-HHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048794 799 GKTGDVETACELFKQMIKGGIRPD--LKSYSVLVD-CLCM----VGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS 871 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~-~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 871 (967)
.. +.++.+...+..+...|.+-. ..++..... .... ..+.+.+..++.++...| +......|++.|..-
T Consensus 409 g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g 484 (552)
T KOG1550|consen 409 GV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYG 484 (552)
T ss_pred cc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeec
Confidence 33 777777777777666432221 111111111 1111 225667788888777544 556677788887544
Q ss_pred ---C-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCHHHHHHhhcCCCcCCCCccc
Q 048794 872 ---G-RIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA---GMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 872 ---g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
+ +++.|...|.++...+ ......++..+... ..+..|.+++.++...+.+...
T Consensus 485 ~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~~ 544 (552)
T KOG1550|consen 485 LGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAYL 544 (552)
T ss_pred CCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhhh
Confidence 3 5999999999988543 55556676666543 1278888888888776665544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0051 Score=63.40 Aligned_cols=66 Identities=18% Similarity=0.070 Sum_probs=51.8
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 820 RPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD-T---ISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 820 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
.|+ ...+++++.+|...|++++|+..|+++++. +|+ . .+|.+++-+|...|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444 678888888888888888888888888874 444 2 34778888888888888888888888863
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.011 Score=61.15 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=55.9
Q ss_pred CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 048794 750 SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC----VIYNILINGFGKTGDVETACELFKQMIKG 817 (967)
Q Consensus 750 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 817 (967)
+.+...+..++.+|.+.|++++|+..|+++++. .|+. .+|++++.+|...|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677888999999999999999999999986 4443 35899999999999999999999999884
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.52 Score=50.41 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=42.0
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLC 834 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 834 (967)
+...++.-+.+...+.-|-++|.++-+. ..+...+...++|.+|.++-++.-+ ..|+ +|...+.-++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~d--Vy~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDD--VYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--cccc--ccchHHHHhh
Confidence 3444444445555556666666655431 1244556677777777777666544 3333 3444444455
Q ss_pred hcCCHHHHHHHHH
Q 048794 835 MVGRVDDALHYFE 847 (967)
Q Consensus 835 ~~g~~~~A~~~~~ 847 (967)
...+++||.+.|.
T Consensus 816 E~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFH 828 (1081)
T ss_pred hhhhHHHHHHHHH
Confidence 5555555544443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.042 Score=45.18 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=52.6
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 048794 797 GFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD---TISYNFMINGLGRSG 872 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 872 (967)
+....|+.+.|++.|.+.+. +-|. ..+|++-+.++.-+|+.++|++-++++++..-+.. ...|.--+.+|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45566666666666666666 3443 45666666666666666666666666665311111 223444555666666
Q ss_pred CHHHHHHHHHHHHHcC
Q 048794 873 RIEEALSLFDEMKKRG 888 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~~ 888 (967)
+-+.|..-|+.+.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666665544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0012 Score=41.14 Aligned_cols=33 Identities=21% Similarity=0.097 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc
Q 048794 894 YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 894 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 926 (967)
.+|..++.++...|++++|+..++++++++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 456777777777788888888888887777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.29 Score=46.57 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=27.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC--CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGF--SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
-.+.|++++|.+.|+.+.+..+ +-...+...++-++.+.+++++|+...++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3444555555555555544311 112234444555556666666666666665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.68 Score=49.58 Aligned_cols=83 Identities=19% Similarity=0.106 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 048794 436 TVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIY 515 (967)
Q Consensus 436 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 515 (967)
+..+...+...+.+...+.-|-++|.+|-+. ..++..+...+++.+|..+-+...+. -+.++...+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~----~~dVy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF----KDDVYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc----cccccchHHH
Confidence 3344444444445556666777777766532 34566677778888888777766554 2233444555
Q ss_pred HHhhcCcHhHHHHHHH
Q 048794 516 GLVKEQRVKDAIWFFH 531 (967)
Q Consensus 516 ~~~~~g~~~~A~~~~~ 531 (967)
.+....++++|.+.|.
T Consensus 813 wLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFH 828 (1081)
T ss_pred HhhhhhhHHHHHHHHH
Confidence 5666666666666543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0037 Score=37.91 Aligned_cols=27 Identities=37% Similarity=0.786 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 230 YTIFVDALCKVGNVEEAFSILDLMRGE 256 (967)
Q Consensus 230 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 256 (967)
|+.++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.11 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.217 Sum_probs=11.8
Q ss_pred HHHHHHHhhccHHHHHHHHHHH
Q 048794 617 PIIKLFCRQKKALAAKDLFVKF 638 (967)
Q Consensus 617 ~l~~~~~~~~~~~~a~~~~~~~ 638 (967)
..+..|...+++++|...+.+.
T Consensus 36 kAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHH
Confidence 3344555555566655555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.92 Score=43.35 Aligned_cols=57 Identities=19% Similarity=0.136 Sum_probs=32.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHH
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV---IYNILINGFGKTGDVETACELFKQMI 815 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~ 815 (967)
.++..|.+.|.+..|..-++++++. .+.... .+..+..+|...|-.++|...-.-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3556667777777777777777665 221222 44445556666666666665544443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.14 Score=45.80 Aligned_cols=55 Identities=27% Similarity=0.475 Sum_probs=25.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 793 ILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEEL 849 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 849 (967)
.++..+...|++++|+..+++++. ..|. ...+..++.+|...|+..+|.+.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444444555555555555544 2332 344444555555555555555555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.28 Score=47.56 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=69.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETA 807 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 807 (967)
....|++.+|...|..++... +........++.+|...|+.+.|..++..+..............-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344555666666666555542 2223345556666666666666666666654321111111111122333333343433
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC
Q 048794 808 CELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGL-DADTISYNFMINGLGRSG 872 (967)
Q Consensus 808 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 872 (967)
..+-.+.-. .| |...-..++..+...|+.++|++.+-.++..+. -.+......+++++.-.|
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333332 44 455666666666777777777766666654321 113344455555555555
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.14 Score=55.76 Aligned_cols=162 Identities=19% Similarity=0.104 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV------IYNILINGFG----KTGDVETACELFKQMIKGGIRPDLKS 825 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~ 825 (967)
...++...+=.||-+.+++.+.+..+.+---.+. .|+..+..++ ...+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3444455555566666666666655421111111 2222222222 234566677777777663 565433
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH-HHHH
Q 048794 826 Y-SVLVDCLCMVGRVDDALHYFEELKLN--GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTY-NSLI 900 (967)
Q Consensus 826 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 900 (967)
| ..-++++...|+.++|++.++++... ..+. ...++.-+++.+.-.+++++|...+..+.+. ..-....| +..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-SKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 3 34466667777777777777765531 1011 2234445667777777777777777777642 12112222 2444
Q ss_pred HHHHhcCCH-------HHHHHhhcCCC
Q 048794 901 LNLGRAGMV-------EEARKLAGGNC 920 (967)
Q Consensus 901 ~~~~~~g~~-------~~A~~~~~~~l 920 (967)
.++...|+. ++|..+++++-
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 455556666 66666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.21 E-value=2.3 Score=45.80 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=100.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048794 16 DLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMV 95 (967)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 95 (967)
+...|+.|+.--.+..+...++.+++.++..-| .-...|......-.+.|..+.+..+|++-+. +++-+...|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyP-l~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYP-LCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 455677777766666777778888888886642 2445778887777888999999999999876 57778888877775
Q ss_pred HH-HccCCHHHHHHHHHHHHHc-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 96 AA-GKRRNIKTVMNLLEEMERL-GLR-PNVYTFTICIRILGRAGKIDEAYRILKRMDDE 151 (967)
Q Consensus 96 ~~-~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (967)
.+ ...|+.+..++.|+.+... |.. .....|..++..-..+++......+|++..+.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 54 4678888899999988765 322 24456778888888889999999999998863
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.085 Score=51.32 Aligned_cols=188 Identities=16% Similarity=0.094 Sum_probs=124.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCC
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC----VIYNILINGFGKTGD 803 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 803 (967)
..-.|+..+|-..+++++.. .|.+..++.-.=++|.-.|+.+.-...+++++.. -.+|. .+...++-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34578888888888988876 4666666666678888899999989999988764 13343 333445556778999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 804 VETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 804 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
+++|.+.-++.++-+ +.|..+...++.++...|+..++.++..+-...=-.. ....|...+-.+.+.+.++.|.++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999998842 3346788889999999999999999876543210011 122344455556788899999999
Q ss_pred HHHHH-HcCCCCCHH-h---HHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 881 FDEMK-KRGISPDLY-T---YNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 881 ~~~~~-~~~~~~~~~-~---~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
|+.=. +. ++.+.. . +..+-.+..+.-.+.+-.++.+-+
T Consensus 270 yD~ei~k~-l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 270 YDREIWKR-LEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHH-hhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 98644 32 443332 2 122333444444455555444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.13 Score=45.03 Aligned_cols=121 Identities=15% Similarity=0.084 Sum_probs=47.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADT---ISYNFMINGLGRSGRIE 875 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 875 (967)
+.+..++|+..|..+.+.|...-+ ......+.+....|+..+|...|.++-.-...|.. .....-+..++..|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 334444455555544443322211 12223334444445555555555444321111111 11122233344555555
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCC
Q 048794 876 EALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 876 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 920 (967)
+...-.+.+..-+.+-....-..|+-+-++.|++..|.++|..+.
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 544444444322222222333344444455555555555554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.14 Score=44.09 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=24.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC--CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGF--SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
..+.|++++|.+.|+.+...-+ +-...+...++.+|.+.|++++|+..+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3344444444444444444311 112233444455555555555555555555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.18 Score=54.93 Aligned_cols=161 Identities=23% Similarity=0.221 Sum_probs=96.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCChhhH------HHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCChhcHH
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISH------NIVISGLV----KSNSIDKAMDLFYNLVSGGFSPTPCTYG 757 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 757 (967)
.++....-.|+-+.+++.+.+..+.+---.+.+- ...+.... ...+.+.|.+++..+...- |....-..
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lfl~ 271 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALFLF 271 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 4555566678888888888877653211111111 11111111 2345677788888877762 33333344
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHH
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYG---CKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVL-VDCL 833 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~ 833 (967)
.-+..+...|+.++|++.|+++.... .......+..++.++....+|++|...|.++.+.+ .-+...|..+ +.++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 45677777888888888888765311 01123356667777888888888888888888742 2223334333 4555
Q ss_pred HhcCCH-------HHHHHHHHHHH
Q 048794 834 CMVGRV-------DDALHYFEELK 850 (967)
Q Consensus 834 ~~~g~~-------~~A~~~~~~~~ 850 (967)
...|+. ++|.+++.++-
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 667777 77888887765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.13 Score=42.50 Aligned_cols=93 Identities=22% Similarity=0.228 Sum_probs=68.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKG-GIRPD--LKSYSVLVDCLCMV 836 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~ 836 (967)
+.+....|+++.|++.|.+.+... +.....||+-+.++.-+|+.++|+.-++++++. |-... ..+|..-+..|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 445677888888888888888753 335668888888888888888888888888874 21211 24566667788888
Q ss_pred CCHHHHHHHHHHHHHCC
Q 048794 837 GRVDDALHYFEELKLNG 853 (967)
Q Consensus 837 g~~~~A~~~~~~~~~~~ 853 (967)
|+.+.|..-|+.+.+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888887765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.017 Score=38.50 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 048794 860 SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLI 900 (967)
Q Consensus 860 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 900 (967)
++..++.+|.+.|++++|+++|+++++. .|.+..+|..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHHhh
Confidence 4555666666666666666666666653 333445555554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.096 Score=48.21 Aligned_cols=88 Identities=26% Similarity=0.417 Sum_probs=53.4
Q ss_pred cHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----------------CCCHHHHHHH
Q 048794 226 DVVTYTIFVDALCK-----VGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLR----------------LDRVEEALEV 284 (967)
Q Consensus 226 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~ 284 (967)
+..+|..++..+.+ .|..+-....+..|.+-|+..|..+|+.|+..+=+ -.+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444432 23444444445555555555555555555544432 1245667888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhhcCCh
Q 048794 285 FNNMEILGVQPTAYTYILFIDYYGKSADP 313 (967)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (967)
+++|...|+-||..++..++..+++.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 88888888888888888888888776653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=2.2 Score=44.41 Aligned_cols=114 Identities=15% Similarity=0.005 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccHHHHHHHHHHH--HHhcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCc
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKF--TENLGVTSTL-----EMYNYLIHGLLEVHATEMGLDLFTTMKN-------AGCAP 681 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~ 681 (967)
..-.+.+...|++.+|.+++... .+..+....+ ..++.|+..+.+.+.+.-+..+|.+.++ .|+.|
T Consensus 244 ~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~ 323 (696)
T KOG2471|consen 244 LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKP 323 (696)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 33445566666777776666443 1222211121 1234455556666667777666666653 23332
Q ss_pred C----------HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048794 682 D----------ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVK 730 (967)
Q Consensus 682 ~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 730 (967)
. -...+..+-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 324 ~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 324 AKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred CcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 1 112233444556667777777777666654 24566667777666654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.02 Score=55.49 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=42.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 048794 724 VISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD 803 (967)
Q Consensus 724 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 803 (967)
-++.|.++|.+++|++.|.+.+... +.++..+...+.+|.+...+..|..-.+.++..+ ..-...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555432 2234444455555555555555554444444321 0011133333333334445
Q ss_pred HHHHHHHHHHHHh
Q 048794 804 VETACELFKQMIK 816 (967)
Q Consensus 804 ~~~A~~~~~~~~~ 816 (967)
..+|-+-++.++.
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 5555555555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.074 Score=47.66 Aligned_cols=71 Identities=24% Similarity=0.408 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHhH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK-----KRGISPDLYTY 896 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 896 (967)
+...++..+...|++++|..++++++..+ +.+...+..++.+|...|+..+|.+.|+++. +.|++|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45567788889999999999999999854 4477789999999999999999999999875 45888887653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.15 Score=47.04 Aligned_cols=103 Identities=24% Similarity=0.342 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048794 365 PDSVTYNMMMKCYSKV-----GQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVT 439 (967)
Q Consensus 365 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 439 (967)
.+..+|..++..|.+. |..+-....+..|.+.|+.-|..+|+.|+..+=+ |.+- ....
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------------p~n~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------------PRNF 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------------cccH
Confidence 4555666666666533 5556566666677777777777777777665433 1111 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 048794 440 YNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNE 486 (967)
Q Consensus 440 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 486 (967)
+..+..-| ..+-+-|++++++|...|+.||..++..++..+.+.+
T Consensus 108 fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 11111111 1234567777777777777777777777777775443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.59 Score=42.78 Aligned_cols=97 Identities=11% Similarity=-0.090 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHH
Q 048794 486 EEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAK 565 (967)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 565 (967)
|-...|+--|...+... +.-+.+++-++-.+...|+++.|.+.|+...+..|....+...-+-++.--|++..|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 44444444444444443 22356777777778888999999999998888888888888777777777888888888888
Q ss_pred HHHhhcCCCcchhhHhhh
Q 048794 566 CSIYQIGTRAERQFWQDL 583 (967)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~ 583 (967)
+....++.+|-+..|.=+
T Consensus 158 ~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred HHHhcCCCChHHHHHHHH
Confidence 877777777766666433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.17 Score=45.38 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=70.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDYGCKPN----CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC 834 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 834 (967)
++-+...|++++|..-|..+++..+... ...|.+-+.+..+.+.++.|+.-..+.++ +.|. ..++...+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHH
Confidence 4456778899999999998888633222 23566667778888899999999999888 4675 466667788899
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 048794 835 MVGRVDDALHYFEELKLN 852 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~ 852 (967)
+..++++|+.-|+++++.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 999999999999999885
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.2 Score=48.88 Aligned_cols=154 Identities=12% Similarity=-0.014 Sum_probs=83.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhH----HHHHHHHHhcCCH
Q 048794 659 LEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISH----NIVISGLVKSNSI 734 (967)
Q Consensus 659 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 734 (967)
.-.|++.+|-..++++++.- +.|..++...-.+|.-.|+.+.-...+++++.. ..+|...+ ..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 35566666666666666542 335555555556666667766666666666543 23333222 2233344566667
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHH
Q 048794 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN---CVIYNILINGFGKTGDVETACELF 811 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 811 (967)
++|.+.-+++++.+ +.+.-+...++..+...|++.++.++..+-...=-..+ ...|=-.+..+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777666653 33444455566666666777777666655432100001 112222344455566777777777
Q ss_pred HHHH
Q 048794 812 KQMI 815 (967)
Q Consensus 812 ~~~~ 815 (967)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 6633
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.4 Score=49.60 Aligned_cols=254 Identities=14% Similarity=0.083 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHHHcCCCcCHhhHHHHHHHH-----HccCChHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhc
Q 048794 664 TEMGLDLFTTMKNAGCAPDISTYNLLLDGY-----GKSGRVEELLKLYEEMSF-------RGCKPNTISHNIVISGLVKS 731 (967)
Q Consensus 664 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 731 (967)
...|.++++...+.| +......++.++ ....+.+.|+.+|+.+.. .+ ...+...++.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456778888777764 444444444443 355789999999999877 44 344566778888774
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----
Q 048794 732 N-----SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS---GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFG---- 799 (967)
Q Consensus 732 ~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 799 (967)
. +.+.|+.++.++...+.+. ....++.+|..- .+...|.++|..+.+.| .......++.+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPD---AQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCch---HHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCC
Confidence 3 6778999999998876333 334455555443 36789999999999876 4455555666653
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---H-h---
Q 048794 800 KTGDVETACELFKQMIKGGIRPDLKSYSVLVDC--LCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL---G-R--- 870 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~-~--- 870 (967)
...+...|...++++.+.| .|. +...++.. +.. ++++.+.-.+..+.+.+.+.....-..+.... . .
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~--A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~ 451 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPS--AAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGV 451 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-Chh--hHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccc
Confidence 3348899999999999976 343 33333333 333 78888877777776654333221111111111 1 1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----CCHHHHHHhhcCCCcCCCCcccc-ccceeeeccC
Q 048794 871 SGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA----GMVEEARKLAGGNCFVQPSEFVS-SELQVIYAEN 939 (967)
Q Consensus 871 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~ 939 (967)
..+.+.+...+.++.. +-+......++..+... .+++.|...+.++.... .-. ..++.++..=
T Consensus 452 ~~~~~~~~~~~~~a~~---~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g 519 (552)
T KOG1550|consen 452 ISTLERAFSLYSRAAA---QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHG 519 (552)
T ss_pred ccchhHHHHHHHHHHh---ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcC
Confidence 2267777888877763 34667777788777765 35899999998887666 222 5777777443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.88 Score=44.29 Aligned_cols=147 Identities=13% Similarity=0.103 Sum_probs=93.8
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHH
Q 048794 691 DGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLE 770 (967)
Q Consensus 691 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 770 (967)
......|++.+|..+|..+.... +.+......++.+|...|+.+.|..++..+-.............-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567788888888888887764 33455667788888888888888888876554321111112222345555655555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 048794 771 EAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 771 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 840 (967)
+...+-.++-.. +-|...-..++..+...|+.++|++.+-.+++.+..- |...-..++.++...|.-+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 555555555542 2266677888888889999999999888887642221 2345556666666555433
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.2 Score=45.14 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=51.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 795 INGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
+..+...|++++|+..++..+....+.+ ..+-..|+++....|++|+|+..+......+. .......-++++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 3345666777777777776664211111 12234556666677777777776665543221 2223344566777777
Q ss_pred CHHHHHHHHHHHHHc
Q 048794 873 RIEEALSLFDEMKKR 887 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~ 887 (967)
+-++|...|++++..
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 777777777777654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.72 E-value=4.7 Score=45.29 Aligned_cols=177 Identities=18% Similarity=0.152 Sum_probs=96.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 91 SALMVAAGKRRNIKTVMNLLEEMERLGLRPN--VYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALC 168 (967)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (967)
..-+..+.+...++-|..+-.. .+..++ .......+..+-+.|++++|...|-+.... +.| ..++.-+.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 3444555566666666555433 222221 122333444555778888887777665432 122 23444445
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048794 169 TAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFS 248 (967)
Q Consensus 169 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 248 (967)
...+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.+...++.+..- .|.- ..-....+..+.+.+-.++|..
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 555566666677777766643 44445667788888888877776665433 1110 1113445556666666666665
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 048794 249 ILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNM 288 (967)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 288 (967)
+-..... .......++ -..+++++|+..+..+
T Consensus 485 LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 5544432 233333333 3456778887777654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.017 Score=55.97 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=76.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 794 LINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 794 l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
-++-|.++|++++|+..|.+.+. ..| +..++.+.+.+|.+.+++..|..-...++..+ +.-..+|+.-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 47778899999999999999887 567 67788888899999999998888888887653 334557887888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCH
Q 048794 873 RIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~~~~~~~ 893 (967)
...+|.+-++.+++ ++|+.
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 88999988888885 66765
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.43 Score=49.87 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH--
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNG-LDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL-- 903 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-- 903 (967)
..++.++-+.|+.+||++.++.+++.. ......+...|++++...+++.++..++.+..+...|....+-++-+-.-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345555555555555555555555321 11122234455555555565555555555543221222222211111111
Q ss_pred -----------HhcC---CHHHHHHhhcCCCcCCCCcccc
Q 048794 904 -----------GRAG---MVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 904 -----------~~~g---~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.+.| --..|.+.+.++.+.||.-|..
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 1111 1234667788888889988874
|
The molecular function of this protein is uncertain. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.7 Score=40.63 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=24.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048794 133 GRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKA 185 (967)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 185 (967)
+..|.+++.....+.+...+-+--...-..|.-+-.+.|++..|.++|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34455555554444444333233333334444444455555555555555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.55 E-value=5.4 Score=44.84 Aligned_cols=177 Identities=17% Similarity=0.231 Sum_probs=100.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 048794 266 NTLICGLLRLDRVEEALEVFNNMEILGVQPT--AYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLA 343 (967)
Q Consensus 266 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (967)
..-+..+.+...++.|+.+.+. .+..++ .......+..+.+.|+.++|...+-+.+.. .--..++.-+.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~------le~s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF------LEPSEVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc------CChHHHHHHhc
Confidence 3445555566666666665433 222221 122333344455778888888777655432 11134455566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048794 344 ETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWE 423 (967)
Q Consensus 344 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 423 (967)
.......-...++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+... .|.. ..-....+..+.+.+-.++|.-
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 666666677777777777743 33444567888888888877666655543 2211 1123455666667777777766
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 424 MFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGM 463 (967)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 463 (967)
+-.+... .......++. ..+++++|++.++.+
T Consensus 485 LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 6554432 3444444443 457788888877665
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.84 Score=41.35 Aligned_cols=94 Identities=14% Similarity=-0.005 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG 907 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 907 (967)
+..+...|++++|...++..+...-+. ...+-..|+.+....|++++|...++.....+ -.+.....-+.++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcC
Confidence 334444455555555555444321011 11122234444555555555555544443110 01122223344555555
Q ss_pred CHHHHHHhhcCCCcCCCC
Q 048794 908 MVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 908 ~~~~A~~~~~~~l~~~p~ 925 (967)
+.++|+.-|++++...++
T Consensus 174 ~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 174 DKQEARAAYEKALESDAS 191 (207)
T ss_pred chHHHHHHHHHHHHccCC
Confidence 555555555555554433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.0059 Score=38.01 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc
Q 048794 895 TYNSLILNLGRAGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 895 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 926 (967)
+|..++.++...|++++|.+.++++++++|+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56667777777777777777777777777743
|
... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.39 E-value=6.8 Score=44.97 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC--HHHHH-----HHHHHHHhcCCHHHHHHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKG-GIRPD--LKSYS-----VLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~--~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
.+.+...+. .|+..+........... ...|+ ...|. .+...+...|+.++|.....+..
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 333333333 56666655544443321 11233 33442 33455677888888888776654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.37 E-value=3.6 Score=41.60 Aligned_cols=125 Identities=14% Similarity=0.088 Sum_probs=67.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcC-CHHHHHHHHHHHHhC----C----CCCcH----
Q 048794 413 YKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLG-------KEG-QVQKAIELFEGMTDH----G----CFPNT---- 472 (967)
Q Consensus 413 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g-~~~~a~~~~~~~~~~----~----~~~~~---- 472 (967)
.+.|+.+.|..++.++.......++.....+...|. ..+ +++.|...+++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467888888888888765432234444444444442 355 778887777765432 1 12222
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcC
Q 048794 473 -VTFNTLLHCLCKNEEVD---LAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLY 538 (967)
Q Consensus 473 -~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (967)
.++..++.+|...+..+ .|..+++.+.... +..+.++..-+..+.+.++.+++.+.+.+|.....
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 33445555666555543 3444444443332 22233333444445556667777777777665433
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.27 E-value=2.3 Score=44.70 Aligned_cols=64 Identities=6% Similarity=0.004 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHhhHHHHHHHHHccCChHHHHHHHHHHHh
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAP-DISTYNLLLDGYGKSGRVEELLKLYEEMSF 711 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 711 (967)
..+...++..+.+.|+.++|++.++++.+..+.. .......|+..+...+.+.++..++.+.-+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444556666667888888888888887653222 233556677777788888888777777543
|
The molecular function of this protein is uncertain. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.41 Score=43.13 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=74.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 795 INGFGKTGDVETACELFKQMIKGGIRPD------LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
+.-+...|++++|..-|..++.. .|. ...|.+-+.++.+.++++.|+.-..++++.+ +....++...+.+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHH
Confidence 44567889999999999999984 443 2345666888899999999999999999864 22445666778899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
-+..++++|+.-|+++++ ..|..
T Consensus 179 ek~ek~eealeDyKki~E--~dPs~ 201 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILE--SDPSR 201 (271)
T ss_pred HhhhhHHHHHHHHHHHHH--hCcch
Confidence 999999999999999986 34543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.86 Score=38.05 Aligned_cols=139 Identities=21% Similarity=0.357 Sum_probs=77.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHH
Q 048794 238 CKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKAL 317 (967)
Q Consensus 238 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 317 (967)
.-.|.+++..+++.+.... .+..-+|.++.-....-+-+-..++++..-+. + | ...+|+.....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki-F--D----------is~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI-F--D----------ISKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-------------GGG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--C----------chhhcchHHHH
Confidence 3467777778888776654 26666777777666666666666666655332 1 1 11233333333
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048794 318 ETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENG 397 (967)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 397 (967)
..+-.+-. ........+..+...|.-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++..+-+.|
T Consensus 77 ~C~~~~n~-----~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRNK-----LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33222111 33344556667778888888888887776533 5677777788888888888888888888887776
Q ss_pred C
Q 048794 398 C 398 (967)
Q Consensus 398 ~ 398 (967)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=4.5 Score=41.46 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----C-
Q 048794 733 SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT-----G- 802 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~- 802 (967)
+..+|.++|+.....+. ......++..|.. ..+..+|...|+++.+.|..+...+...++..|..- -
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 35556666664444332 1233334444443 336677777777777765332223355555555442 1
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 048794 803 -DVETACELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG----- 872 (967)
Q Consensus 803 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 872 (967)
+...|+..|.++...+ +......++.+|.. ..++++|..+|+++.+.+. ......++ .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchh
Confidence 2236888888887754 45566667766644 3368888888888888662 44444455 556555
Q ss_pred ----------CHHHHHHHHHHHHHcCCCC
Q 048794 873 ----------RIEEALSLFDEMKKRGISP 891 (967)
Q Consensus 873 ----------~~~~A~~~~~~~~~~~~~~ 891 (967)
+...|...+......+.+.
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 6666677777766554443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.06 E-value=3.8 Score=43.10 Aligned_cols=226 Identities=15% Similarity=0.066 Sum_probs=126.5
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHH
Q 048794 681 PDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLI 760 (967)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 760 (967)
-|...+.+++..+.+.-++.-...+..+++..| .+...+..++++|... ..+.-..+++++.+..+... ..-..++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDv-v~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV-VIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH-HHHHHHH
Confidence 355666677777777777777777777777763 3566777777777777 44556677777776543322 2334455
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCC--CH---HHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDYGCKP--NC---VIYNILINGFGKTGDVETACELFKQMIKG-GIRPDLKSYSVLVDCLC 834 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 834 (967)
..|.+ ++.+.+..+|.++...-++. +. ..|..+... -..+.+.-+.+..++... |..--...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555 77777777777776542220 11 144444332 123556666666665543 21112233344445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS-GRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 913 (967)
...++++|+++++-+++++ ..+..+...++.-+... .... +-+-|......-....++.++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd~y~~~~----------------~~e~yl~~s~i~~~~rnf~~~l 279 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENLRDKYRGHS----------------QLEEYLKISNISQSGRNFFEAL 279 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHHHhccch----------------hHHHHHHhcchhhccccHHHHH
Confidence 6666777777777666654 33333333333332210 0001 1112222222333345788999
Q ss_pred HhhcCCCcCCCCccccc
Q 048794 914 KLAGGNCFVQPSEFVSS 930 (967)
Q Consensus 914 ~~~~~~l~~~p~~~~~~ 930 (967)
.-|++.+..+..|++.+
T Consensus 280 ~dFek~m~f~eGnFVfH 296 (711)
T COG1747 280 NDFEKLMHFDEGNFVFH 296 (711)
T ss_pred HHHHHHheeccCceEEe
Confidence 99999999999999863
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.97 E-value=5 Score=41.11 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048794 336 NASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKA 415 (967)
Q Consensus 336 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 415 (967)
+..+.-+...|+...|..+-.... .|+...|...+.+++..+++++-.++... .-.+.-|...+..|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444445555555554444332 34555555555555555555544443221 11224455555555555
Q ss_pred CCHHHHHHHHHH
Q 048794 416 DRVDEAWEMFCR 427 (967)
Q Consensus 416 ~~~~~A~~~~~~ 427 (967)
|...+|..++.+
T Consensus 251 ~~~~eA~~yI~k 262 (319)
T PF04840_consen 251 GNKKEASKYIPK 262 (319)
T ss_pred CCHHHHHHHHHh
Confidence 555555555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.4 Score=39.00 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=86.6
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHH
Q 048794 692 GYGKSGRVEELLKLYEEMSFRGCKPN-TISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLE 770 (967)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 770 (967)
.|-+.|-+.-|.--|.+.+.. .|+ +..++.++--+...|+++.|.+.|+...+-++..+-...+. +..+.=-|+++
T Consensus 74 lYDSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchH
Confidence 344445555555555555554 333 34555555556667777777777777766543322222222 22223346777
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 771 EAKKLFEEMLDYGCKPNCV--IYNILINGFGKTGDVETACELFK-QMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFE 847 (967)
Q Consensus 771 ~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 847 (967)
-|.+-+.+..+.. +.|+. .|.-+. ...-++.+|..-+. +... ...+-.-|+.+...+.+. .++ .+++
T Consensus 151 LAq~d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yLgki--S~e--~l~~ 220 (297)
T COG4785 151 LAQDDLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYLGKI--SEE--TLME 220 (297)
T ss_pred hhHHHHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHHhhc--cHH--HHHH
Confidence 7766666665542 12322 222221 12235555554433 3332 121222233222222211 111 1222
Q ss_pred HHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 848 ELKLNGLDA------DTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 848 ~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
++....-+. -.++|..|+.-+...|+.++|..+|+-+..
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 222110000 135677778888888888888888887764
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.035 Score=49.20 Aligned_cols=53 Identities=23% Similarity=0.189 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcC-----------CHHHHHHhhcCCCcCCCCcccc
Q 048794 875 EEALSLFDEMKKRGISPDL-YTYNSLILNLGRAG-----------MVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++|++-|++++. +.|+. +++..++.++...+ .|++|...|+++...+|+|...
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 344444444443 34443 55666666555432 2566777777777777777664
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=5.1 Score=40.32 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048794 864 MINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 864 l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
.+.++...|.. +|...+.++.
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHH
Confidence 44444444442 3444444444
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.12 Score=43.07 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 855 DADTISYNFMINGLGRSG---RIEEALSLFDEMKKRGISPDL--YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.++..+-..+++++.++. +..+.+.+++.+.+. -+|+. +..+-|+-.+++.|+|++++++.+..++.+|+|+-+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 455555556666666555 344555566665542 22222 444555666666666666666666666666666654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.053 Score=33.51 Aligned_cols=22 Identities=32% Similarity=0.214 Sum_probs=13.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHH
Q 048794 892 DLYTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 892 ~~~~~~~l~~~~~~~g~~~~A~ 913 (967)
+..+|..|+.+|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3456666666666666666654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.43 E-value=4.8 Score=38.39 Aligned_cols=209 Identities=15% Similarity=0.150 Sum_probs=106.7
Q ss_pred cCChHHHHHHHHHHHHcCCCc---CHhhHHHHHHHHHccCChHHHHHHHHHHHhC---CC--CCChhhHHHHHHHHHhcC
Q 048794 661 VHATEMGLDLFTTMKNAGCAP---DISTYNLLLDGYGKSGRVEELLKLYEEMSFR---GC--KPNTISHNIVISGLVKSN 732 (967)
Q Consensus 661 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~ 732 (967)
..++++|+.-|.++++..... ...++-.++....+.|++++.+..|.+++.. .+ ..+..+.++++.....+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 346677777777776642222 2334445566677778888877777776532 00 112234444444333333
Q ss_pred CHHH-------HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC----CCC-------HHHHHHH
Q 048794 733 SIDK-------AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC----KPN-------CVIYNIL 794 (967)
Q Consensus 733 ~~~~-------A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-------~~~~~~l 794 (967)
+.+- .++.++.+...... ..+-..++..|...|++..-.++++++..... ..| ..+|..-
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLW--FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLW--FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceee--eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 3322 22333332222111 11334567777777777777777777653211 111 2245555
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHH----HCCCCCCHH---HHH
Q 048794 795 INGFGKTGDVETACELFKQMIKG-GIRPDLKSYSVL----VDCLCMVGRVDDALHYFEELK----LNGLDADTI---SYN 862 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~---~~~ 862 (967)
+.+|..+++-.+--.+|++.+.- .--|.+...-.+ +.+..+.|++++|..-|=++. +.| .|... -|.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYL 276 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYL 276 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHH
Confidence 66777777766667777776541 123433222211 334556777877765444443 233 33222 244
Q ss_pred HHHHHHHhcC
Q 048794 863 FMINGLGRSG 872 (967)
Q Consensus 863 ~l~~~~~~~g 872 (967)
.|+..+.++|
T Consensus 277 VLANMLmkS~ 286 (440)
T KOG1464|consen 277 VLANMLMKSG 286 (440)
T ss_pred HHHHHHHHcC
Confidence 4566666666
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.41 E-value=12 Score=42.83 Aligned_cols=229 Identities=12% Similarity=0.044 Sum_probs=124.7
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCChh-------hHHHHH-HHHHhcCCHHHHHHHHHHHHhCC----CCCChhcHHHH
Q 048794 692 GYGKSGRVEELLKLYEEMSFRGCKPNTI-------SHNIVI-SGLVKSNSIDKAMDLFYNLVSGG----FSPTPCTYGPL 759 (967)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l 759 (967)
......++++|-.+..++...=..|+.. .+..+- ......|+++.|.++.+.++..- .......+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4456677888888877765532122211 222222 23346788999999998888762 12233456677
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHH--HHHHhccC--CHHHHHHHHHHHHhC--CCCCC----HHHH
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDYGCKPNCV---IYNIL--INGFGKTG--DVETACELFKQMIKG--GIRPD----LKSY 826 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~~--~~~~A~~~~~~~~~~--~~~p~----~~~~ 826 (967)
+.+..-.|++++|..+..+..+..-.-+.. .|..+ ...+..+| .+.+.+..+...... .-.|- ..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 778888899999999988776531122322 23332 33456677 334444444444321 11222 1233
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--H--HhHHHH
Q 048794 827 SVLVDCLCM-VGRVDDALHYFEELKLNGLDADTI--SYNFMINGLGRSGRIEEALSLFDEMKKRGISPD--L--YTYNSL 899 (967)
Q Consensus 827 ~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~--~~~~~l 899 (967)
..+.+++.+ .+...++...+.--......|-.. .+++|+.+....|+.++|...+.++......++ . ......
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 333444443 122223333332222222222222 234788999999999999999999875433332 2 111122
Q ss_pred HH--HHHhcCCHHHHHHhhcCCC
Q 048794 900 IL--NLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 900 ~~--~~~~~g~~~~A~~~~~~~l 920 (967)
+. .....||.++|..+..+..
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhcc
Confidence 22 2225699999988887743
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.63 Score=39.73 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 048794 118 LRPNVYTFTICIRILGRAGKIDEAYRILKRMDDE-GCGPDVVTYTVLIDALCTA 170 (967)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 170 (967)
..|+..+..+++.+|+..|++..|.++.+.+.+. +++.+..+|..|+..+...
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 4577788888888888888888888888877654 5666777788877765543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.89 Score=38.86 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=32.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCCCCHHHHHHHHHH
Q 048794 468 CFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPR-NCWPDVLTYNTIIYG 516 (967)
Q Consensus 468 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~ 516 (967)
..|+..+..+++.+|+..|++..|.++++..... +++.+...|..++..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3466777777777777777777777777666554 344556666666655
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.7 Score=46.07 Aligned_cols=118 Identities=15% Similarity=0.042 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-------- 892 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------- 892 (967)
.++..++.++.+.|+++.|...+.++...+... .+.....-+..+...|+..+|+..++...+..+..+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 456666666666777777766666665422111 233334445556666666777666666554111110
Q ss_pred -------------------------HHhHHHHHHHHHhc------CCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCC
Q 048794 893 -------------------------LYTYNSLILNLGRA------GMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENP 940 (967)
Q Consensus 893 -------------------------~~~~~~l~~~~~~~------g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g 940 (967)
..++..++.-.... ++.+++.+.++++.+++|+.... +.+|..+...-
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 12233444444444 78888999999999999988876 56666665443
Q ss_pred C
Q 048794 941 R 941 (967)
Q Consensus 941 ~ 941 (967)
+
T Consensus 307 ~ 307 (352)
T PF02259_consen 307 E 307 (352)
T ss_pred H
Confidence 3
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.2 Score=45.94 Aligned_cols=81 Identities=23% Similarity=0.304 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVIS 726 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 726 (967)
+...|..|+......|+++-|+..|.+..+ +..|+-.|...|+.+.-.++.+.+...| -++....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~ 410 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQ 410 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHH
Confidence 344555555555555665555555544432 2234444555555555555554444432 1233334
Q ss_pred HHHhcCCHHHHHHHHH
Q 048794 727 GLVKSNSIDKAMDLFY 742 (967)
Q Consensus 727 ~~~~~~~~~~A~~~~~ 742 (967)
++...|+.++..+++.
T Consensus 411 ~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 411 AALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHT-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4444555555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.80 E-value=5.7 Score=41.54 Aligned_cols=108 Identities=17% Similarity=-0.037 Sum_probs=59.6
Q ss_pred HHhccCCHHHHHHHHHHHHhC---C--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC----
Q 048794 797 GFGKTGDVETACELFKQMIKG---G--IRPD---LKSYSVLVDCLCMVGRVDDALHYFEELKL-------NGLDAD---- 857 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~---~--~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~---- 857 (967)
.+.-+|++.+|.+++...--+ | +.|. -..|++|+-++.+.|.+.-+..+|++++. .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 344555666666655543211 1 1222 12345555555566666655555555542 233332
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 858 ------TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 858 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
.+...+.+-.|.+.|+.-.|.++|.++... +.-++..|..|+.++..
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 233444566677777777777777777654 55667777777776664
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.027 Score=34.65 Aligned_cols=30 Identities=17% Similarity=-0.022 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 896 YNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 896 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
+..++.++.+.|++++|++.++++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344555555556666666666665555554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.66 E-value=8.9 Score=38.74 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=31.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH-------HHhcC-cHHHHHHHHHHHHH
Q 048794 28 SLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHF-------ILQSG-FCREALAVYKRVVS 80 (967)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~-~~~~A~~~~~~~~~ 80 (967)
.+.|+++.|...+.++.......++.....+... ....+ ++++|..++++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4678899999999998865422233332222222 23344 77777777766544
|
It is also involved in sporulation []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.59 Score=41.81 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCC-------HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGK---TGD-------VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG 837 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 837 (967)
++.|.+.++.....+ +.|...++..+.++.. ..+ +++|+.=|++++. +.|+ ..++..++.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 566777777765543 3466666666555432 233 3445555555555 6788 478888888886544
Q ss_pred C-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 838 R-----------VDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 838 ~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
. +++|..+|+++.. .+|+...|..-++.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEM 122 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHH
Confidence 3 4555555666655 36777777654444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.53 E-value=5 Score=35.44 Aligned_cols=127 Identities=12% Similarity=0.075 Sum_probs=72.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 048794 19 TYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAG 98 (967)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (967)
....++..+...+....+...++.+...+. .++..++.++..+++.+ .....+.+.. ..+......+++.|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 344566677777777777777777777664 46677777777777653 3333343332 123344555666677
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 99 KRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRA-GKIDEAYRILKRMDDEGCGPDVVTYTVLIDALC 168 (967)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (967)
+.+.++++.-++..+.. +...+..+... ++++.|.+.+.+. .+...|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 77777777666655421 11122233333 6667776666552 24456666665554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.18 Score=31.71 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
..|+.+|.+.|++++|+.+|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.36 E-value=3 Score=44.93 Aligned_cols=131 Identities=21% Similarity=0.233 Sum_probs=62.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 89 TYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALC 168 (967)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (967)
..+.++.-+-+.|..+.|+.+-.+ .. .-.....++|+++.|.++.++. ++...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 355555555555555555444322 11 1223344556666665554332 24456666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 048794 169 TAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFS 248 (967)
Q Consensus 169 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 248 (967)
+.|+++-|.+.|.+..+ +..|+-.|...|+.+...++.+.....|- ++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666666665532 33444455555666655555555544431 1222233334455555555
Q ss_pred HHHH
Q 048794 249 ILDL 252 (967)
Q Consensus 249 ~~~~ 252 (967)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.31 E-value=1.6 Score=40.89 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=58.8
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 840 (967)
|....++..|+..|.+++.. .|... .|.+=+.++.+.++++.+..--.++++ +.|| ....+.++.++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 33444566666666666653 44443 344445566666677777766666666 4566 355666666666777777
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHH
Q 048794 841 DALHYFEELKL----NGLDADTISYNFMING 867 (967)
Q Consensus 841 ~A~~~~~~~~~----~~~~~~~~~~~~l~~~ 867 (967)
+|+..++++.+ ..+++.......|..+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 77777776642 3333444444444444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.30 E-value=16 Score=40.71 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=77.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGR 870 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 870 (967)
.+.-+.-+..-|+..+|.++-.+.. -||...|..-+.++...+++++-+++-++. .++..|.-...+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHh
Confidence 3334444566778888887766653 578788888888899999998877775542 224556667778889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcC
Q 048794 871 SGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGG 918 (967)
Q Consensus 871 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 918 (967)
.|+.++|.+++-++. |.+ ....+|.+.|++.+|.+.+-+
T Consensus 757 ~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccC--ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 999999998887664 222 356678888888888877653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=93.29 E-value=11 Score=38.68 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 048794 371 NMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKE 450 (967)
Q Consensus 371 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 450 (967)
+..+.-+...|+...|.++-.... .|+...|...+.+++..++|++-..+... . -++.-|...+..|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 333445556677666666654442 46666777777777777777766654332 1 1335567777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 048794 451 GQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEM 498 (967)
Q Consensus 451 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (967)
|+..+|..++.++ ++ ..-+..|.+.|++.+|.+.-.+.
T Consensus 251 ~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 7777777776662 11 23345566777777776654333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.7 Score=39.97 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=63.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHH--H
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLD---ADTISY--N 862 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~--~ 862 (967)
.+..++..|.+.|+.++|++.|.++.+....|. ...+..++++....|++..+..++.++...-.. .+.... .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 677788888888888888888888877544444 355677788888888888888888877642111 111111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
.-+-.+...|+|.+|.+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11223456778888888876665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.045 Score=37.76 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 896 YNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 896 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+..++-.+.+.|+|++|.++.+.+|+.+|+|.-+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3445555666666666666666666666666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.19 Score=31.54 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 861 YNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 861 ~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
+..|+.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777777777777777777754
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.1 Score=34.94 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=26.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
.++..+|+-|.-.+++...... -++++..+..++.+|.+.|+..++.++++++.+.|+
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444445544444444444432 245555555555556666666666665555555443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.07 E-value=18 Score=40.47 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 048794 337 ASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQV--DEAVTLLSEMVENGCEPDVIVMNTLIDTLYK 414 (967)
Q Consensus 337 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 414 (967)
.++..+...+.+..|+++-..+...-..- ...|.....-+.+..+. +.+.+.++.=.... ..+...|..+++-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHh
Confidence 34666778888888888877765422111 45666666666655322 23333333322221 2345567777777788
Q ss_pred cCCHHHHHHHHHH
Q 048794 415 ADRVDEAWEMFCR 427 (967)
Q Consensus 415 ~~~~~~A~~~~~~ 427 (967)
+|+.+-|..+++.
T Consensus 520 ~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 520 EGRFELARKLLEL 532 (829)
T ss_pred cCcHHHHHHHHhc
Confidence 8999888887754
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.04 E-value=3.6 Score=36.42 Aligned_cols=114 Identities=13% Similarity=0.014 Sum_probs=67.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCH
Q 048794 24 FKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNI 103 (967)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (967)
+..-.+.++..+++.+++.++-..|. .+..-..-...++..|+|.+|+.+|+.+... .|.......|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCC
Confidence 45556777888898888888877654 3332333444578889999999999998664 35444555566555555444
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048794 104 KTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYR 143 (967)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (967)
..-+..-+++...+. |..+ ..+++.+....+...|..
T Consensus 94 ~~Wr~~A~evle~~~--d~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 94 PSWRRYADEVLESGA--DPDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred hHHHHHHHHHHhcCC--ChHH-HHHHHHHHHhccccchhh
Confidence 444444455555442 3333 234445544444444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.21 Score=30.88 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+|..++.++...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.98 E-value=14 Score=39.10 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 048794 631 AKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLD 691 (967)
Q Consensus 631 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 691 (967)
......++....+......++..+-.-|....++.+|++++..+++.+ ..|..+-..++.
T Consensus 188 fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 188 FLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 333333333333333334444444455666667777777777666553 334444433433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.27 Score=30.31 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 860 SYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 860 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.+..++.++...|++++|++.++++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.70 E-value=1 Score=42.11 Aligned_cols=114 Identities=13% Similarity=0.064 Sum_probs=88.9
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 048794 797 GFGKTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD-TISYNFMINGLGRSGRI 874 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 874 (967)
.|.....+..|+..|.+.+. +.|.. .-|.+-+.++.+.++++.+..--.++++. .|+ ......++..+.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 45566789999999999998 68987 45567889999999999999999998885 454 45667799999999999
Q ss_pred HHHHHHHHHHH----HcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 048794 875 EEALSLFDEMK----KRGISPDLYTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 875 ~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 914 (967)
++|+..+.++. ...+++...++..|-.+-.+--+..++..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 99999999984 33355566888877766665555555555
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=13 Score=37.52 Aligned_cols=225 Identities=14% Similarity=0.084 Sum_probs=139.3
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCChhcH
Q 048794 681 PDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSI----DKAMDLFYNLVSGGFSPTPCTY 756 (967)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~ 756 (967)
++.......+..+...|. +++......+.. .+|.......+.++.+.|+. .++...+..+... +++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 444444445555555553 344444444443 23455555555666666653 4566666665433 3344444
Q ss_pred HHHHHHHHcCCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048794 757 GPLIDGLSKSGR-----LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVD 831 (967)
Q Consensus 757 ~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 831 (967)
...+.++...+. ...+...+..+.. .++..+....+.++.+.++ ++|+..+-.+++ .++..+...-+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 444445444432 2344555555444 3466677777777777766 678888888887 455555555566
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 048794 832 CLCMVG-RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 832 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 910 (967)
++.+.+ ...++...+..++. .++..+....+.++.+.|. .+|+..+-+.++. ++ .....+.++...|. +
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~-~ 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK---GT--VGDLIIEAAGELGD-K 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCC-H
Confidence 666553 25577777777774 5577777778888888888 5788877777743 22 34567788899988 5
Q ss_pred HHHHhhcCCCcCCCCccc
Q 048794 911 EARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 911 ~A~~~~~~~l~~~p~~~~ 928 (967)
+|...+++++..+|+...
T Consensus 252 ~a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 252 TLLPVLDTLLYKFDDNEI 269 (280)
T ss_pred hHHHHHHHHHhhCCChhH
Confidence 899999999888885443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.20 E-value=22 Score=42.10 Aligned_cols=50 Identities=22% Similarity=0.177 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
..|+.-+...++.-+|.++.++..+ +|.. ....|++...+++|.++....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s---d~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS---DPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc---CHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 4555555666666666666555443 2222 112344555666666554443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.19 E-value=17 Score=38.48 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcC-----------------CHHHHHH
Q 048794 859 ISYNFMINGLGRS------GRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAG-----------------MVEEARK 914 (967)
Q Consensus 859 ~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g-----------------~~~~A~~ 914 (967)
.++..++...... +..+++...|+.+.+ +.|+. ..|..++..+.+.= -...|+.
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~ 330 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIE 330 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHH
Confidence 3455555555555 788888888888885 44443 56666665544331 1134666
Q ss_pred hhcCCCcCCCC
Q 048794 915 LAGGNCFVQPS 925 (967)
Q Consensus 915 ~~~~~l~~~p~ 925 (967)
.|-+++...|+
T Consensus 331 ~y~~al~~~~~ 341 (352)
T PF02259_consen 331 GYLKALSLGSK 341 (352)
T ss_pred HHHHHHhhCCC
Confidence 66666666666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.17 E-value=15 Score=37.52 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=102.7
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cC
Q 048794 661 VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK----SGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVK----SN 732 (967)
Q Consensus 661 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 732 (967)
.+++..+...+......+ +......++..|.. ..+..+|+++|+.+...| .......++..|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCccc
Confidence 344555555555555422 11233333333332 234666777777665543 23344445555544 33
Q ss_pred CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c
Q 048794 733 SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG-------RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK----T 801 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 801 (967)
+..+|..+|+++...|..+.......++..|..-. +...|...|.++...+ +......++.+|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 67777777777777654433222344444444321 2347888888888764 55666677777643 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHCC
Q 048794 802 GDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVG---------------RVDDALHYFEELKLNG 853 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~ 853 (967)
.++++|...|.+..+.|. ......+. ++...| +...|..++..+...+
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 488999999999888653 44555566 555555 5556666666665554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.76 E-value=29 Score=39.89 Aligned_cols=238 Identities=13% Similarity=0.051 Sum_probs=129.5
Q ss_pred CCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCC---CCH---HHHHHHH-HHHHhcCChHHHHHHHHHHHHcCC----
Q 048794 611 DDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVT---STL---EMYNYLI-HGLLEVHATEMGLDLFTTMKNAGC---- 679 (967)
Q Consensus 611 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~---~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~---- 679 (967)
.+.....-+.......++.+|..++.++....+.+ ... ..++.+- .+....|+++.|.++.+.....-+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 34445555666677888999998888875443331 111 1333332 334477889999999888876521
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhh---HHHH--HHHHHhcCCH--HHHHHHHHHHHhCCC---
Q 048794 680 APDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTIS---HNIV--ISGLVKSNSI--DKAMDLFYNLVSGGF--- 749 (967)
Q Consensus 680 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~--~~A~~~~~~~~~~~~--- 749 (967)
.+....+..++.+..-.|++++|..+.++..+..-..+... |..+ ...+..+|+. .+....|........
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 12345567778888889999999999887765421223222 2222 2345566733 333334433333211
Q ss_pred C---CChhcHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--
Q 048794 750 S---PTPCTYGPLIDGLSKS-GRLEEAKKLFEEMLDYGCKPNCV--IYNILINGFGKTGDVETACELFKQMIKGGIRP-- 821 (967)
Q Consensus 750 ~---~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-- 821 (967)
+ +-..++..+..++.+. +...+|..-++-.......|-.. .+..++.++...|++++|...++++......+
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 1 1122334444444441 11222222222222221111111 23467888889999999999999987632222
Q ss_pred --CHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 048794 822 --DLKSYSVLVDC--LCMVGRVDDALHYFEE 848 (967)
Q Consensus 822 --~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 848 (967)
+..+....+.+ -...|+.+++.....+
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222222322 2456888888877766
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.14 Score=30.91 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 895 TYNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 895 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
.+..++..+...|++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455666666666666666666666666664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.39 E-value=1.5 Score=43.20 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCcHHHHHH
Q 048794 53 YSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMER-----LGLRPNVYTFTI 127 (967)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 127 (967)
.++..++..+...|+++.+.+.++++.... +-+...|..++.++.+.|+...|...|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445566666666666666666666666643 34555666666666666666666666666654 355666655555
Q ss_pred HHHH
Q 048794 128 CIRI 131 (967)
Q Consensus 128 l~~~ 131 (967)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.38 E-value=6.9 Score=34.01 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=45.5
Q ss_pred CCCCcccHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 048794 13 INRDLSTYLTI---FKALSLKGGLRRASFALEKMRAAGFVL-NAYSYNGFIHFILQSGFCREALAVYKRVVSEG 82 (967)
Q Consensus 13 ~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 82 (967)
+.++..+-..| +..-...++..++..+++.|+-..|.. ...++. ...++..|+|.+|+.+|+.+.+.+
T Consensus 3 ~qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 3 IQCSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred CcCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 34444444433 344556888999999999988776542 223333 345788899999999999997754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=91.18 E-value=4.6 Score=38.55 Aligned_cols=86 Identities=20% Similarity=0.133 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHhcCCH-------HHHHHHHHHHHHCCCCC-----CHHHHH
Q 048794 801 TGDVETACELFKQMIK----GGIRPDL--KSYSVLVDCLCMVGRV-------DDALHYFEELKLNGLDA-----DTISYN 862 (967)
Q Consensus 801 ~~~~~~A~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~-----~~~~~~ 862 (967)
...+++|++.|.-++- .+.+|.. ..+..+++.|...|+. ..|++.|.++.+..-.| ......
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3345555555544332 1223332 2334455666555552 23445555554321111 123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.++.+..+.|++++|.+.|.++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHc
Confidence 566777777777777777777763
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.00 E-value=11 Score=33.52 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=27.8
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 98 GKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDE 151 (967)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (967)
.+.++.+++..++..+.-.. |.....-..-...+...|++.+|..+|+.+...
T Consensus 21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666655432 112222233344455666666666666666554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.89 E-value=2.2 Score=39.23 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 770 EEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKG---GIRPDLKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 770 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~ 843 (967)
++|.+.|-++-..+.-.++.....++..|.+ .+.++|+.++-++++. +-.+|+..+..|+.++.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4455555555444333344455555555543 3556666666665542 12344555556666666666665554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.81 E-value=20 Score=36.31 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 841 DALHYFEELKLNGLDADTISYNFMI 865 (967)
Q Consensus 841 ~A~~~~~~~~~~~~~~~~~~~~~l~ 865 (967)
++..+++.+.+.++++....|..+|
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHHH
Confidence 4444555555555555444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.67 E-value=2.9 Score=41.23 Aligned_cols=59 Identities=22% Similarity=0.372 Sum_probs=29.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
++..++..+...|+++.++..+++++.. .| +...|..++.+|...|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4444555555555555555555555542 23 23445555555555555555555555443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.61 E-value=25 Score=37.10 Aligned_cols=178 Identities=17% Similarity=0.042 Sum_probs=110.5
Q ss_pred HcCCCHHHHHHHHHHHHHCCC-CCC--H------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGC-KPN--C------VIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSY--SVLVDC 832 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~-~~~--~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~ 832 (967)
.-.|++.+|++-+..|.+... .|. . .....++...+.-+.++.|...|..+.+....-|..++ .+++..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 347999999999988876421 122 1 12333444445668899999999998875333444443 466888
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-----hHHHHHH
Q 048794 833 LCMVGRVDDALHYFEELKLNG-LDADTI-----SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLY-----TYNSLIL 901 (967)
Q Consensus 833 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~ 901 (967)
|.+.|+-+.-.+.++.+--.+ ++.+.. .+...+-.....|++.||...+.+.++-..-.|.. .+.-|+.
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 888888777666666543211 111221 22223333468899999999999888532111211 1234455
Q ss_pred HHHhcCCHHHHHHhhcCCC---cCCCCcccc----ccceeeeccCCC
Q 048794 902 NLGRAGMVEEARKLAGGNC---FVQPSEFVS----SELQVIYAENPR 941 (967)
Q Consensus 902 ~~~~~g~~~~A~~~~~~~l---~~~p~~~~~----~~l~~~~~~~g~ 941 (967)
+....||..++.+...-+. ++-|+.++. ..+-.+|-..|+
T Consensus 494 v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 6667899999999888666 456777763 256666766666
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.54 E-value=21 Score=36.14 Aligned_cols=131 Identities=16% Similarity=0.284 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CChHHHHHHHHHHHhCCC---CCCHhhHHHHHHHHHccCCH
Q 048794 138 IDEAYRILKRMDDEGCGPDVVTYTVLIDALCT--A----GRLDQAKEIFLKMKASSH---QPDQVTYITLLDKFSDCGNI 208 (967)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 208 (967)
+++...+++.+.+.|+..+..++-+....... . ....+|..+|+.|++..+ .++...+..++.. ...+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777788888877777665543332222 2 234678889999987653 3444455555433 33343
Q ss_pred ----HHHHHHHHHHHhCCCCCcH--hHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048794 209 ----EVVKEFWSQMVADGYAADV--VTYTIFVDALCKVGN--VEEAFSILDLMRGEGILPNLHTYNTLIC 270 (967)
Q Consensus 209 ----~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 270 (967)
+.++.+++.+.+.|+.... .....++........ ...+..+++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4556667777776665432 233333332221111 3467777888888888777666655543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.52 E-value=3.6 Score=37.95 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--HhhHHHHHHHHHccCChHHHHHHHHHHHh
Q 048794 649 EMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPD--ISTYNLLLDGYGKSGRVEELLKLYEEMSF 711 (967)
Q Consensus 649 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 711 (967)
..+..++..|.+.|+.+.|++.|.++.+....+. ...+..++......+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555666777777777777777777766533322 23445556666666777777666666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.26 E-value=9 Score=35.46 Aligned_cols=77 Identities=10% Similarity=-0.006 Sum_probs=51.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN---GLDADTISYNFMINGLGRSGRIEE 876 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 876 (967)
+.|+ +.|.+.|-++...+.--++.....|+..|. ..+.+++++++.++++. +-++++..+..|+.++.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 4444 677777777766544445566666666665 45777888888777752 224466777777777777777777
Q ss_pred HH
Q 048794 877 AL 878 (967)
Q Consensus 877 A~ 878 (967)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.17 E-value=28 Score=36.83 Aligned_cols=328 Identities=13% Similarity=0.004 Sum_probs=179.6
Q ss_pred chHHHHHHHHhhc-cHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH---
Q 048794 614 VVVPIIKLFCRQK-KALAAKDLFVKFTENLGVTS--TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYN--- 687 (967)
Q Consensus 614 ~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--- 687 (967)
.+..++..|+... ....++..+++.++.....+ .-.....++..+.-.+++..|.+.+.-=.+.. .+-...|.
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr~~ 168 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLRML 168 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHHHH
Confidence 3456677777766 77788888888765443332 23344566777778888888877642111110 11111111
Q ss_pred -HHHH--HHHc---cCChHHHHHHHHHHHhCCCCCChhh-------H-HHHHHHHHhcCCHHHHHHHHHHHHh---CCCC
Q 048794 688 -LLLD--GYGK---SGRVEELLKLYEEMSFRGCKPNTIS-------H-NIVISGLVKSNSIDKAMDLFYNLVS---GGFS 750 (967)
Q Consensus 688 -~l~~--~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~-------~-~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~ 750 (967)
.+.. .+.. ..+...+.....++... ..+|..- | ..-+.-|...|+...+...++++.. .+.+
T Consensus 169 ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist 247 (629)
T KOG2300|consen 169 FTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIST 247 (629)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCC
Confidence 1111 1111 22334444555555544 2334321 1 1112334556776666655554432 2111
Q ss_pred C------------Ch--hcH-----------HHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHH--------HH
Q 048794 751 P------------TP--CTY-----------GPLIDGLSKSGRLEEAKKLFEEMLDY----GCKP-NCVI--------YN 792 (967)
Q Consensus 751 ~------------~~--~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~--------~~ 792 (967)
+ .+ ..| .....--.-.|-+++|.++-++++.. .-.+ ...+ ..
T Consensus 248 ~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE 327 (629)
T KOG2300|consen 248 SSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLE 327 (629)
T ss_pred CCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 1 11 111 11111111345566666655555421 0011 1111 22
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC-CCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-
Q 048794 793 ILINGFGKTGDVETACELFKQMIKG-GIRPDL--------KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYN- 862 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~- 862 (967)
.++.+-.-.|++.+|++-...|.+- .-.|.. .....++-.+...|.++.|...|..+.+.....+..++.
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2333334679999999999998762 123431 223445556667789999999999988643344555443
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc--
Q 048794 863 -FMINGLGRSGRIEEALSLFDEMKKRGISPD----------LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-- 929 (967)
Q Consensus 863 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-- 929 (967)
.++-.|.+.|+-++-.++++..- +++ ..++...+-..++.|++.||..++.+.++.. +.-..
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~r 482 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNR 482 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHH
Confidence 47788999888777666555542 221 2345555666778899999999999999876 22211
Q ss_pred ------ccceeeeccCCCcccccch
Q 048794 930 ------SELQVIYAENPRATSLSHK 948 (967)
Q Consensus 930 ------~~l~~~~~~~g~~~~~~~~ 948 (967)
..|+.+....|+..++.+.
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nm 507 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNM 507 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhc
Confidence 2688999999998876653
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=88.91 E-value=9.8 Score=36.33 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=59.1
Q ss_pred cCCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccCC-------HHHHHHHHHHHHhCCCCC----C-HHHH
Q 048794 765 KSGRLEEAKKLFEEMLD----YGCKPN--CVIYNILINGFGKTGD-------VETACELFKQMIKGGIRP----D-LKSY 826 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~p----~-~~~~ 826 (967)
....+++|++.|.-++- .+.++. ...+..+++.|...|+ +..|++.|++.......| + ....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34456667666665432 122333 2367788888888887 455666666666542222 1 3556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNG 853 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 853 (967)
+.++....+.|++++|.++|.+++..+
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 778889999999999999999999643
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=88.83 E-value=16 Score=32.20 Aligned_cols=43 Identities=7% Similarity=0.106 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048794 337 ASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKV 380 (967)
Q Consensus 337 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (967)
.++..+...+........++.+...+ +.+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444455555555555555443 23444555555555543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.48 E-value=16 Score=31.86 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=28.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 99 KRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDE 151 (967)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (967)
...+.+++..++..+.-.. |.....-..-...+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666665442 112222233344556666777777777666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.38 E-value=19 Score=32.53 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=49.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048794 143 RILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADG 222 (967)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 222 (967)
+.++.+...+++++...+..++..+.+.|.+..-..+ .+.++-+|.......+-.+. +.+..+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3444444556666767777777777777665444333 33334444443333222221 2233344444344332
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 223 YAADVVTYTIFVDALCKVGNVEEAFSILDLM 253 (967)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (967)
=...+..++..+...|++-+|.+.....
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1113344555666666666666666554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=88.32 E-value=9.9 Score=32.30 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 785 KPNCVIYNILINGFGKTG---DVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 785 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.++..+..++++++.+.. +..+.+.++++..+. -.|+ ....+.|+-.+.+.|+|++++++.+..++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 445556666666666544 455667777776652 2343 345566666677777777777777766664
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.97 E-value=4 Score=38.41 Aligned_cols=61 Identities=15% Similarity=0.019 Sum_probs=29.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 864 MINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 864 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
+.+++...|++-++++.-...+.. -+.+.-+|..-+.+.....|..+|..-+.++|+++|.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 344444555555555555555532 2222344444444555555555555555555555554
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.53 Score=49.78 Aligned_cols=96 Identities=18% Similarity=0.110 Sum_probs=54.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEA 877 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 877 (967)
..|+...|.+.+..+.. ..|. ......|+.++.+.|....|-.++.+.+... ...+.++..++.++....+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 45666666666666655 2343 2344556666666666666666666665543 33445555666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHH
Q 048794 878 LSLFDEMKKRGISPDLYTYNSL 899 (967)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~l 899 (967)
++.++++++. -+.+..+-..|
T Consensus 696 ~~~~~~a~~~-~~~~~~~~~~l 716 (886)
T KOG4507|consen 696 LEAFRQALKL-TTKCPECENSL 716 (886)
T ss_pred HHHHHHHHhc-CCCChhhHHHH
Confidence 6666666643 22233444444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.27 E-value=5.9 Score=38.19 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCh
Q 048794 278 VEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADP 313 (967)
Q Consensus 278 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 313 (967)
-.-++.++++|...|+.||..+-..++.++++.+.+
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 345778899999999999999999999988887754
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.27 E-value=62 Score=37.19 Aligned_cols=87 Identities=14% Similarity=0.205 Sum_probs=32.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCcHhHHHHHHHHHHh---c
Q 048794 165 DALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGY-AADVVTYTIFVDALCK---V 240 (967)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~---~ 240 (967)
..+.-.|.++.|.+++-.. .....+.+++...+..|.- +......-..++.... .+.+..+..++..|++ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gL---L~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGL---LRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCC---CCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 3455667777777776661 1223344444444333321 1111111122221110 1112445566666654 3
Q ss_pred CCHHHHHHHHHHHHhC
Q 048794 241 GNVEEAFSILDLMRGE 256 (967)
Q Consensus 241 g~~~~a~~~~~~~~~~ 256 (967)
.+..+|.++|-.+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 4666666666655543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.01 E-value=1.7 Score=26.62 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+|..++.+|...|++++|...|+++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555555555555555555554
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.97 E-value=5.4 Score=38.43 Aligned_cols=104 Identities=16% Similarity=0.246 Sum_probs=55.9
Q ss_pred CcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 048794 120 PNVYTFTICIRILGR-----AGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVT 194 (967)
Q Consensus 120 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 194 (967)
.+-.+|...+..+.. .+.++-.-..++.|.+.|+..|..+|+.|+..+-+..-. |.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cHH-H
Confidence 345556655555543 345666666777788888888888888888765443211 111 0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCC
Q 048794 195 YITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGN 242 (967)
Q Consensus 195 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 242 (967)
+...+-.|- .+-+-+..++++|...|+-||..+-..++.++.+.+-
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 1223345556666666666666666666666555543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.7 Score=28.24 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
+++.|+.+|...|++++|..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555556666666666666655554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.38 E-value=69 Score=36.88 Aligned_cols=206 Identities=9% Similarity=-0.021 Sum_probs=115.1
Q ss_pred ccCChHHHHHHHHHHHhCC-CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHH
Q 048794 695 KSGRVEELLKLYEEMSFRG-CKPNT--ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEE 771 (967)
Q Consensus 695 ~~g~~~~A~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 771 (967)
...+.+.|..++.+..... ..+.. .....++......+...+|...+........ +.....-.+..-...++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHH
Confidence 3456788999998865432 11111 1223333222333225677777776544322 22233333444457889998
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHH---HHH
Q 048794 772 AKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRV-DDALH---YFE 847 (967)
Q Consensus 772 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~---~~~ 847 (967)
+...+..+.... .....-...++.++...|+.++|...|+++.. .. +|+.+... .+.|.. .-... .-.
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~ 402 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPD 402 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchh
Confidence 888888875532 22445667788887778999999999999754 12 34433222 112221 00000 000
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 848 ELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 848 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
.. +...+ ....+..+...|+..+|...+..+... .+..-...++......|.++.|+....+.
T Consensus 403 ~~----~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 403 SA----LTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hh----hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00 01111 122445667788888888888887753 34455566677777778888887766544
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.21 E-value=78 Score=37.30 Aligned_cols=167 Identities=16% Similarity=0.156 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-C-c-CHhhHHHHHHHHHccCCh--HHHHHHHHHHHhCCCCCChhhH---
Q 048794 650 MYNYLIHGLLEVHATEMGLDLFTTMKNAGC-A-P-DISTYNLLLDGYGKSGRV--EELLKLYEEMSFRGCKPNTISH--- 721 (967)
Q Consensus 650 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~-~-~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~--- 721 (967)
.|..|+..|...|..++|++++.+..+..- . + -...+..++....+.+.. +-.+++-....+..+......+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 467788888888888999988888887320 0 0 111233344444444444 4444444444433211110011
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC--------CCHHHHHHH--HHHHH--
Q 048794 722 ---------NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS--------GRLEEAKKL--FEEML-- 780 (967)
Q Consensus 722 ---------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~--~~~~~-- 780 (967)
...+-.|......+-+..+++.+......++....+.++..|... ++-+++.+. .+++.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 112233566677777888888888775444555556666665432 122233333 22221
Q ss_pred -H--CCCCCC--------HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 781 -D--YGCKPN--------CVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 781 -~--~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
+ ..+.|. ...|...+..+.+.|+.++|+.+|-..+.
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1 111221 22344445555677788888888777765
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.61 E-value=0.9 Score=42.06 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=46.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
...+.|+.+.|.++|.+++.. .+.....|..++....+.|+++.|.+.+++.++++|++-..
T Consensus 4 ~~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 345677888888888888753 33345778888888888888888888888888888887664
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.29 E-value=78 Score=36.50 Aligned_cols=192 Identities=18% Similarity=0.176 Sum_probs=91.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCh--hhHHHHHHHHH-hcCcHHHHHHHHHHHHHcCCCCCHh---
Q 048794 16 DLSTYLTIFKALSLKGGLRRASFALEKMRA-AGFVLNA--YSYNGFIHFIL-QSGFCREALAVYKRVVSEGIKPSLK--- 88 (967)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~--~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~--- 88 (967)
.++.|..|+.. |+..++.+.+ ..++|.. .++-.+...+. ...+++.|...+++.+...-.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 44555555544 5666666663 3333322 34445555554 6677888888887765433222222
Q ss_pred -hHH-HHHHHHHccCCHHHHHHHHHHHHHcC----CCCcHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHH
Q 048794 89 -TYS-ALMVAAGKRRNIKTVMNLLEEMERLG----LRPNVYTFTIC-IRILGRAGKIDEAYRILKRMDDEG---CGPDVV 158 (967)
Q Consensus 89 -~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ 158 (967)
... .++..+.+.+. ..|...+++..+.- ..+-...+..+ +..+...+++..|.+.++.+...- ..+...
T Consensus 100 ~~~~~ll~~i~~~~~~-~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNP-KAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 112 22333333333 33777776655431 11112222222 222223367777777777665431 133333
Q ss_pred HHHHHHHHHH--hcCChHHHHHHHHHHHhCC---------CCCCHhhHHHHHHHHH--ccCCHHHHHHHHHH
Q 048794 159 TYTVLIDALC--TAGRLDQAKEIFLKMKASS---------HQPDQVTYITLLDKFS--DCGNIEVVKEFWSQ 217 (967)
Q Consensus 159 ~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~ 217 (967)
++-.++.+.. +.+..+++.+..+.+.... ..|...++..++..++ ..|++..+.+.+++
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444333 4455566666665552211 1234445555555543 44555555444433
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.27 E-value=28 Score=31.43 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=42.6
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048794 75 YKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCG 154 (967)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 154 (967)
.+.+...+++|+...+..++..+.+.|++.....+ ...++-+|.......+-.+. +....+.++--+|..+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH---
Confidence 33344455555555666666666666554443332 23333333332222221111 1222233333333321
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048794 155 PDVVTYTVLIDALCTAGRLDQAKEIFLKM 183 (967)
Q Consensus 155 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 183 (967)
=...+..++..+...|++-+|.++....
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0013445555566666666666665554
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=84.87 E-value=1e+02 Score=37.53 Aligned_cols=154 Identities=14% Similarity=0.068 Sum_probs=84.0
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHHHhCCCCCCHHHHHHH
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVE-TACELFKQMIKGGIRPDLKSYSVL 829 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~p~~~~~~~l 829 (967)
++..+-...+.++.+.+..+ .+..++. .++..+....+.++...+..+ .+...+.++.+ .++.......
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~----~l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA 795 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVE----SVAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAA 795 (897)
T ss_pred CCHHHHHHHHHHHhcccCcH----HHHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHH
Confidence 33334444445555544322 2223333 345566555666655554432 23455555554 4566666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMV 909 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 909 (967)
+..+...|..+.+...+..+++ +++..+....+.++...+. +++...+..++ -.|+..+-..-+.+|.+.+.-
T Consensus 796 ~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L---~D~~~~VR~~A~~aL~~~~~~ 868 (897)
T PRK13800 796 LAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEAL---TDPHLDVRKAAVLALTRWPGD 868 (897)
T ss_pred HHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHh---cCCCHHHHHHHHHHHhccCCC
Confidence 7777777765555455555554 3455556666677766665 45666666665 345666666666666665333
Q ss_pred HHHHHhhcCCCc
Q 048794 910 EEARKLAGGNCF 921 (967)
Q Consensus 910 ~~A~~~~~~~l~ 921 (967)
..+...+.++++
T Consensus 869 ~~a~~~L~~al~ 880 (897)
T PRK13800 869 PAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHHh
Confidence 455555555554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.18 E-value=1e+02 Score=37.01 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 048794 228 VTYTIFVDALCKVG--NVEEAFSILDLMRG 255 (967)
Q Consensus 228 ~~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 255 (967)
.....++..|.+.+ .++.++....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 44456667777776 66777777766664
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=84.15 E-value=24 Score=37.07 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=30.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL-GRSGRIEEALSLFDEMK 885 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~ 885 (967)
+..+.+.|-+..|+++.+-+.+.+...|+......++.| .+.++++--+++++...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 445556666666666666666544332454444445544 34555555555555543
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.93 E-value=2.4 Score=27.51 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
.+++.++.+|...|++++|+.++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888888999999888888765
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=83.52 E-value=0.76 Score=28.74 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHh--hcCCCcCCCC
Q 048794 896 YNSLILNLGRAGMVEEARKL--AGGNCFVQPS 925 (967)
Q Consensus 896 ~~~l~~~~~~~g~~~~A~~~--~~~~l~~~p~ 925 (967)
+..++..+...|++++|+++ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44455555555555555555 3244444443
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.24 E-value=90 Score=35.55 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=36.6
Q ss_pred HccCCHHHHHHHHHHHHhCCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHH
Q 048794 203 SDCGNIEVVKEFWSQMVADGYAA---DVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVE 279 (967)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 279 (967)
.+.+.+++|...-+..... .+ ....+...+..+...|++++|-...-.|... +...|...+..+...++..
T Consensus 367 l~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccc
Confidence 3444555555544433221 22 2334555566666666666666666666543 5555555555555554443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=83.09 E-value=1.1e+02 Score=36.65 Aligned_cols=60 Identities=8% Similarity=-0.003 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhh
Q 048794 523 VKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDL 583 (967)
Q Consensus 523 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 583 (967)
+++|+.-|+.+.. .+.-+--|...+-.|.+.|++++-++.+.-++++.+.+|....+.+-
T Consensus 535 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (932)
T PRK13184 535 FTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDH 594 (932)
T ss_pred HHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 3445555555543 23334445555556667777777777777777777777766554443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=82.97 E-value=1.2e+02 Score=36.91 Aligned_cols=255 Identities=11% Similarity=0.045 Sum_probs=140.7
Q ss_pred CCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHH
Q 048794 610 RDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLL 689 (967)
Q Consensus 610 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 689 (967)
+++.++...+..+.+.+.. .+...+.+.+. .++..+....+..+.+.+........+..+++. ++..+-...
T Consensus 633 ~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~----D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPP-GFGPALVAALG----DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCHHHHHHHHHHHhhhcch-hHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 3344455555555555543 34444444432 233334444444443332221122333344432 444444444
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCH
Q 048794 690 LDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRL 769 (967)
Q Consensus 690 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 769 (967)
+..+...+..+ . ..+-+++. .+|.......+.++...+..+. +..++. +++..+-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~-~~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-A-ALFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-H-HHHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 55554433211 1 23333333 3455555556666665554322 222332 44555666666777776654
Q ss_pred H-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 770 E-EAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 770 ~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
+ .+...+..+.+ .+|..+....+..+...|..+.+...+..+++ .++..+...-+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 3 24566666665 46778888888888888876666566777775 4666666667777777765 567777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 048794 849 LKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYN 897 (967)
Q Consensus 849 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 897 (967)
+++ +|+..+....+.++.+.+....+...+..+++ .++..+-.
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~ 888 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRA 888 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHH
Confidence 775 56777777778888776434567777777773 44554433
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.82 E-value=49 Score=37.10 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=57.0
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048794 799 GKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGR-VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEA 877 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 877 (967)
...+..+.|+.-|+++-+ +.|....-.+++..+...|+ ++...++-+ .-..|...+++.|..++-
T Consensus 298 tDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~------------IgmkLn~LlgrKG~lekl 363 (1226)
T KOG4279|consen 298 TDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQ------------IGMKLNSLLGRKGALEKL 363 (1226)
T ss_pred cchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHHH------------HHHHHHHHhhccchHHHH
Confidence 344455666666666665 46654444444444443332 222211110 011233345666666665
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 878 LSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.++|+-.- +..+..-.+++.+|++..+..++++|..++.
T Consensus 364 q~YWdV~~-------------y~~asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 364 QEYWDVAT-------------YFEASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred HHHHhHHH-------------hhhhhhhccCHHHHHHHHHHHhccCCceehH
Confidence 55544332 2234445678999999999999999988875
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.38 E-value=75 Score=34.07 Aligned_cols=91 Identities=8% Similarity=-0.019 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHH---HhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHH
Q 048794 476 NTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYG---LVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVV 552 (967)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 552 (967)
..+++-+...|-++.|...+..+.... +++...+...+.. ...+| ...++.+|+.+......++..|......-.
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 345555566666677777776666552 3444555544443 22333 555666666666555566666655554444
Q ss_pred hcCChhHHHHHHHHHH
Q 048794 553 KDGQIEDAFRLAKCSI 568 (967)
Q Consensus 553 ~~~~~~~A~~~~~~~~ 568 (967)
..|..+.+-.++-+++
T Consensus 542 ~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAM 557 (568)
T ss_pred cCCCcccccHHHHHHH
Confidence 5555555555554444
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.27 E-value=3.1 Score=25.12 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=15.8
Q ss_pred HHHHHHhhcCcHhHHHHHHHHHHhhcC
Q 048794 512 TIIYGLVKEQRVKDAIWFFHQMRKWLY 538 (967)
Q Consensus 512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (967)
.++.++.+.|++++|...|+++.+..|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344555556666666666666665444
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.72 E-value=73 Score=33.49 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHhhccCCCCCCHHHHHHHHHH-HhhcCcHhHHHHHHHHHHhhcCCC---hhHHHhHHHHHHhcCChhHHH
Q 048794 486 EEVDLAMKMLYEMTPRNCWPDVLTYNTIIYG-LVKEQRVKDAIWFFHQMRKWLYPD---HITLCTLLPGVVKDGQIEDAF 561 (967)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 561 (967)
|+.+++.+.+..+.....++....+-.|+.+ .....+...|+++|+..+=..|.. ...+..-+....+.|+.+++.
T Consensus 126 Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~ 205 (421)
T PRK12798 126 GRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFE 205 (421)
T ss_pred CCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHH
Confidence 4555555555555444433333333333333 223344555555555544333321 122222233334455555555
Q ss_pred HHHHHHHhhcCCCc-chhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHH
Q 048794 562 RLAKCSIYQIGTRA-ERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFT 639 (967)
Q Consensus 562 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 639 (967)
.+..+.+.+....+ -..++...+..+.......+...+...+..-....-..+|..+++.-...|+.+-|...-.+..
T Consensus 206 ~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 206 ALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 55555554433222 2233333333332222222222222222211222223456666666677777766666665554
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.94 E-value=2.5 Score=24.07 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 048794 862 NFMINGLGRSGRIEEALSLF 881 (967)
Q Consensus 862 ~~l~~~~~~~g~~~~A~~~~ 881 (967)
..++.++...|++++|...+
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 34444555555555554444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.54 E-value=80 Score=33.21 Aligned_cols=199 Identities=13% Similarity=0.038 Sum_probs=115.3
Q ss_pred HccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHhC--CCCCChhcHHHHHHHHHcCCCHH
Q 048794 694 GKSGRVEELLKLYEEMSFRGCKPNTISHNIVISG-LVKSNSIDKAMDLFYNLVSG--GFSPTPCTYGPLIDGLSKSGRLE 770 (967)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 770 (967)
.-.|+..++.+.+..+.....++....+..++.+ .....++..|+..|+.+.-. |.--+......-+....+.|+.+
T Consensus 123 Y~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 123 YLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred HHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 3457778887777776655445555555555544 34456778888888776543 11112234555556667788888
Q ss_pred HHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 048794 771 EAKKLFEEMLDYGCKPNCV---IYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHY 845 (967)
Q Consensus 771 ~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 845 (967)
.+..+-.+.... +..+++ .+..+...+.+..+-. -.+.+..++.. .+|+ ...|..+++.-.-.|+.+-|.-.
T Consensus 203 rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 877766666553 222333 2333444444443211 22335555554 4555 45777778877888999888888
Q ss_pred HHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 048794 846 FEELKLNGLDA---DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYT 895 (967)
Q Consensus 846 ~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 895 (967)
-+++....-.. ......+-+-+-.-..++++|.+.+..+....+.+....
T Consensus 280 s~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~ 332 (421)
T PRK12798 280 SERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRA 332 (421)
T ss_pred HHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHH
Confidence 88877532111 122222222333456678888888888775556666544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.48 E-value=12 Score=29.64 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 048794 70 EALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEME 114 (967)
Q Consensus 70 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (967)
++.+-++.+...++.|+..+..+.+++|-+.+++..|.++|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455666666666777888888888888888888888888887766
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.46 E-value=2.6 Score=24.00 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCHHHHHHhhc
Q 048794 897 NSLILNLGRAGMVEEARKLAG 917 (967)
Q Consensus 897 ~~l~~~~~~~g~~~~A~~~~~ 917 (967)
..++.++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.31 E-value=18 Score=34.35 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 721 HNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 721 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
+....+++...|++.++++....++.. .+.+..+|...+.+....-+..+|..-|..+++.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 344455666667777777766666665 2445556666666666666666666666666664
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.11 E-value=63 Score=31.74 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=25.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
+.+++..|+|.+++.+.-+-....-+-.+++...=+-.|.+.|++....++-...+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34555556666655554433321111122223322334556666655555555555
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 102 bits (253), Expect = 4e-22
Identities = 47/331 (14%), Positives = 100/331 (30%), Gaps = 12/331 (3%)
Query: 176 AKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVD 235
A + + + P + LL + +++V + Q + F
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 236 ALCKVGNVEEAFSILDLMRG---EGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILG 292
+ A +L + G + L L YN ++ G R +E + V ++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 293 VQPTAYTYILFIDYYGKSADPGKALET-FEKMKIRGIVPNVVSCNASLYSLAETGRIGEA 351
+ P +Y + G+ +E E+M G+ + L +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 352 KTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDT 411
+ P V + +++ L + C + L
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ----LHME 311
Query: 412 LYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPN 471
L V + K++K A T TL E + +A+ + + +
Sbjct: 312 LASRVCVVSVEKPTLPSKEVKHARK--TLKTLRDQW--EKALCRALRETKNRLEREVYEG 367
Query: 472 TVTFNTLLHCLCKNEEVDLAMKMLYEMTPRN 502
+ L L + E V + +++L + +
Sbjct: 368 RFSLYPFLCLLDEREVVRMLLQVLQALPAQG 398
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 97.6 bits (241), Expect = 9e-21
Identities = 35/287 (12%), Positives = 75/287 (26%), Gaps = 12/287 (4%)
Query: 293 VQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAK 352
P + + + A T ++ A
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 353 TIFNGLKN---SGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLI 409
+ YN +M +++ G E V +L + + G PD++ +
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
Query: 410 DTLYKADRVDEA-WEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGC 468
+ + D+ +M L + LLS + ++ ++ +
Sbjct: 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ 267
Query: 469 FPNTVTFNTLLHCLCKNEEVDLAMKMLY-EMTPRNCWPDVLTYNTIIYGLVKE-----QR 522
P V + LL + + K+ T + + L V
Sbjct: 268 LPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLP 327
Query: 523 VKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIY 569
K+ ++ LC L ++E + S+Y
Sbjct: 328 SKEVKHARKTLKTLRDQWEKALCRALRETKN--RLEREVYEGRFSLY 372
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 95.7 bits (236), Expect = 4e-20
Identities = 25/190 (13%), Positives = 56/190 (29%), Gaps = 4/190 (2%)
Query: 730 KSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKL---FEEMLDYGCKP 786
S+D S + +L A L
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDAL-HY 845
+YN ++ G+ + G + + + G+ PDL SY+ + C+ + +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 846 FEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905
E++ GL + +++ R+ ++ + P + L+ ++
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 906 AGMVEEARKL 915
KL
Sbjct: 284 KDGRVSYPKL 293
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 94.1 bits (232), Expect = 1e-19
Identities = 26/226 (11%), Positives = 68/226 (30%), Gaps = 6/226 (2%)
Query: 365 PDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEM 424
P +++ +D + + + D++ A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 425 FCRMKDMK---LAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHC 481
+ T+ YN ++ G ++G ++ + + + D G P+ +++ L C
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 482 LCKNE-EVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLY-P 539
+ + + + + L +M+ L ++ + +K P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 540 DHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVG 585
+ LL V +L + + E+Q +L
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLH-LPLKTLQCLFEKQLHMELAS 314
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 88.7 bits (218), Expect = 5e-18
Identities = 26/289 (8%), Positives = 69/289 (23%), Gaps = 34/289 (11%)
Query: 108 NLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDAL 167
L + + P ++ +D +
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 168 CTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADV 227
+L A + + +
Sbjct: 138 LLTDQLPLAHHLLVVHH--------------------------------GQRQKRKLLTL 165
Query: 228 VTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALE-VFN 286
Y + + G +E +L +++ G+ P+L +Y + + R D+ +E
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225
Query: 287 NMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAETG 346
M G++ A + + ++ + + +P V+ + L +
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 347 RIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVE 395
+ + +M + V V++ E+
Sbjct: 286 GRVSYPKLHLP-LKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKH 333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 88.7 bits (218), Expect = 6e-18
Identities = 17/162 (10%), Positives = 53/162 (32%), Gaps = 4/162 (2%)
Query: 674 MKNAGCAPDISTYNLLLDGYGKSGRVE---ELLKLYEEMSFRGCKPNTISHNIVISGLVK 730
A + + ++ LL ++ + +N V+ G +
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 731 SNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEA-KKLFEEMLDYGCKPNCV 789
+ + + + + + G +P +Y + + + + ++ E+M G K +
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVD 831
+L++ + ++ ++ P + S L+
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 87.2 bits (214), Expect = 1e-17
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 3/144 (2%)
Query: 772 AKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVD 831
A L + P L+ ++ Q + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 832 CLCMVGRVDDA---LHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG 888
C + ++ A L + YN ++ G R G +E + + +K G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 889 ISPDLYTYNSLILNLGRAGMVEEA 912
++PDL +Y + + +GR
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGT 219
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.9 bits (182), Expect = 9e-14
Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 3/185 (1%)
Query: 606 NGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENL--GVTSTLEMYNYLIHGLLEVHA 663
+ ++ K + A L V TL+MYN ++ G A
Sbjct: 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA 180
Query: 664 TEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELL-KLYEEMSFRGCKPNTISHN 722
+ + + +K+AG PD+ +Y L G+ + + + E+MS G K +
Sbjct: 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240
Query: 723 IVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782
+++S ++ + + P P L+ + KL +
Sbjct: 241 VLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
Query: 783 GCKPN 787
C
Sbjct: 301 QCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.5 bits (181), Expect = 1e-13
Identities = 18/148 (12%), Positives = 48/148 (32%), Gaps = 1/148 (0%)
Query: 668 LDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISG 727
L + + + YN ++ G+ + G +EL+ + + G P+ +S+ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 728 LVKSNSIDKAM-DLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP 786
+ + + + + G L+ ++ L+ K+ P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 787 NCVIYNILINGFGKTGDVETACELFKQM 814
V + L+ + +L +
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.2 bits (170), Expect = 3e-12
Identities = 21/202 (10%), Positives = 51/202 (25%), Gaps = 4/202 (1%)
Query: 34 RRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSAL 93
+ A + R A + A + + + A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 94 MVAAGKRRNIK---TVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDD 150
+ ++ + + + + + R G E +L + D
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 151 EGCGPDVVTYTVLIDALCTAGRLDQAKEIFL-KMKASSHQPDQVTYITLLDKFSDCGNIE 209
G PD+++Y + + + E L +M + + LL + ++
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 210 VVKEFWSQMVADGYAADVVTYT 231
V + V +
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTS 275
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 9e-14
Identities = 81/670 (12%), Positives = 200/670 (29%), Gaps = 188/670 (28%)
Query: 5 FDLMQKQIINRD-LSTYLTIFKA-LSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFI 62
F+ + Q +D LS + F K + ++ +L+ + I
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCK-------DVQDMPKS---ILSKEEID----HI 54
Query: 63 LQSG------------FCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVM--N 108
+ S + + ++ V E ++ + Y LM + ++M
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRM 111
Query: 109 LLEEMERLGLRPNVYT-FTICIRILGRAGKIDEAYRILKRMDDE---------GCGPDVV 158
+E+ +RL V+ + + R + + L + G G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQALLELRPAKNVLIDGVLGSGK--- 163
Query: 159 TYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQM 218
T + +C + ++ KM ++ ++ L + S +E++++ Q+
Sbjct: 164 --TWVALDVC------LSYKVQCKM------DFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 219 VADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRV 278
+ + + I + + +++ L++ + N LL L V
Sbjct: 210 DPNWTSRSDHSSNIKLR----IHSIQAELR--RLLKSKP-YEN---------CLLVLLNV 253
Query: 279 --EEALEVFN----------NMEILGVQPTAYTYILFIDYYGKSADPGKALETFEK---M 323
+A FN ++ A T + +D++ + P + K
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 324 KIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQV 383
+ + + V++ N S+ I E+ +++ + + C +
Sbjct: 314 RPQDLPREVLTTNPRRLSI-----IAES------IRD---GLATWDNWKHVNCDKLTTII 359
Query: 384 DEAVTLLSEMVENGC-------EPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLA-- 434
+ ++ +L P + L+ ++ + + ++ L
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 435 ----PTVVTYNTLLSGLGK---EGQVQKAI----ELFEGMTDHGCFPNTVT---FNTLLH 480
T+ + L K E + ++I + + P + ++ + H
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 481 CL--CKNEEVDLAMKMLY------------EMTPRNCWPDVLTYNTIIYGLVKEQRVKDA 526
L ++ E +M++ + T N +L NT
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL--NT-------------- 523
Query: 527 IWFFHQMRKWLYPDHIT---------LCTLLPGVVKDGQIEDAFRLAKCSIYQIG----- 572
Q++ Y +I + +L + K E+ + +I
Sbjct: 524 ---LQQLKF--YKPYICDNDPKYERLVNAILDFLPKIE--ENLICSKYTDLLRIALMAED 576
Query: 573 ----TRAERQ 578
A +Q
Sbjct: 577 EAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 4e-11
Identities = 100/698 (14%), Positives = 179/698 (25%), Gaps = 244/698 (34%)
Query: 173 LDQAKEIFLKMKASSH---QPDQVT-----YITLLDKFSDCGNIEVVKEFWSQMVADGY- 223
D K I K + H D V+ + TLL K E+V++F +++ Y
Sbjct: 39 QDMPKSILSK-EEIDHIIMSKDAVSGTLRLFWTLLSK-----QEEMVQKFVEEVLRINYK 92
Query: 224 -------------AADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLIC 270
+ Y D L N + F+ ++ R + Y L
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLY---NDNQVFAKYNVSRLQ-------PYLKLRQ 142
Query: 271 GLLRLDRVEE---------------ALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGK 315
LL L R + AL+V + ++ ++ P
Sbjct: 143 ALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL----KNCNSPET 197
Query: 316 ALETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMK 375
LE +K+ + I PN + S +S RI + L + K
Sbjct: 198 VLEMLQKLLYQ-IDPN--WTSRSDHSSNIKLRIHSIQAELRRL-------------LKSK 241
Query: 376 CYSKVGQVDEAVTLLSEMVENGCEPDVI-VMN----TLIDTLYK--ADRVDEAWEMFCRM 428
Y LL ++ N N L+ T +K D + A
Sbjct: 242 PYEN--------CLL--VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA------- 284
Query: 429 KDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCF---PNTVTFNTLLHCLCKN 485
T ++ + L + + L D +T N +
Sbjct: 285 -----TTTHISLDHHSMTLTPD----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA- 334
Query: 486 EEVDLAMKMLYEMTPR-NCWPDVLT--YNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHI 542
+ + + + W V TII + + RK ++
Sbjct: 335 -------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-------YRK-MFDR-- 377
Query: 543 TLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEK 602
++ P I + + W D++ ++ K
Sbjct: 378 --LSVFP---PSAHIPTI-------LLSL-------IWFDVI--------KSDVMVVVNK 410
Query: 603 LVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGL---L 659
L K +L K + I + L
Sbjct: 411 LH---------------------KYSLVEKQP--------------KESTISIPSIYLEL 435
Query: 660 EVHATEMG------LDLFTTMKNAGCAPDISTYNLLLDGY------------GKSGRVEE 701
+V +D + K + D+ LD Y R+
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTF-DSDDLIP--PYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 702 LLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761
++ + F K I H N+ ++ L Y P I
Sbjct: 493 FRMVFLDFRFLEQK---IRH----DSTA-WNASGSILNTLQQLK---------FYKPYI- 534
Query: 762 GLSKSGRLEEAKKLFEEMLDY--GCKPNCVIY---NIL 794
+ E L +LD+ + N + ++L
Sbjct: 535 -CDNDPKYER---LVNAILDFLPKIEENLICSKYTDLL 568
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 2e-11
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 12/154 (7%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
++G E A++ ++ +P+ + +L + + ++ + IK P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNP 64
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
L ++YS L + G++ +A+ ++ L+L D Y + L +G +E A+
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID--GYINLAAALVAAGDMEGAVQ 122
Query: 880 LFDEMKKRGISPDLY-TYNSLILNLGRAGMVEEA 912
+ + +PDLY + L L G +EEA
Sbjct: 123 AYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEA 154
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 3e-10
Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 20/158 (12%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVI-YNILINGFGKTGDVETACELFKQMIKGGIRP 821
+ RL+ + + P Y+ L N + + G ++ A E ++ ++ ++P
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR--LKP 98
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
D Y L L G ++ A+ + L+ N + + N L GR+EEA +
Sbjct: 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC--VRSDLGNLLKALGRLEEAKA 156
Query: 880 LFDEMKKRGISPDLY-TYNSLILNLGRA----GMVEEA 912
+ + + P+ ++ NLG G + A
Sbjct: 157 CYLKAIE--TQPNFAVAWS----NLGCVFNAQGEIWLA 188
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 3e-08
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVI-YNILINGFGKTGDVETACELFKQMIKGGIRP 821
L ++ + A + L PN + + L + + G ++ A + +++ I+ ++P
Sbjct: 213 LKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQP 268
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
+Y L + L G V +A + L+L AD S N + N G IEEA+
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD--SLNNLANIKREQGNIEEAVR 326
Query: 880 LFDEMKKRGISPDLY-TYNSLILNLGRAGMVEEA 912
L+ + + + P+ +++L L + G ++EA
Sbjct: 327 LYRKALE--VFPEFAAAHSNLASVLQQQGKLQEA 358
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 28/148 (18%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
+ G ++ A + ++ +P+ Y L N + G V A + + ++ + P
Sbjct: 247 YYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCP 302
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
S + L + G +++A+ + + L++ A +++ + + L + G+++EAL
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA--AHSNLASVLQQQGKLQEALM 360
Query: 880 LFDEMKKRGISPDLY-TYNSLILNLGRA 906
+ E + ISP Y+ N+G
Sbjct: 361 HYKEAIR--ISPTFADAYS----NMGNT 382
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 4e-07
Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 12/154 (7%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVI-YNILINGFGKTGDVETACELFKQMIKGGIRP 821
+ G + A FE+ + PN + Y L N + + A + + + + P
Sbjct: 179 FNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSP 234
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
+ + L G +D A+ + ++L D +Y + N L G + EA
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD--AYCNLANALKEKGSVAEAED 292
Query: 880 LFDEMKKRGISPDLY-TYNSLILNLGRAGMVEEA 912
++ + + P + N+L G +EEA
Sbjct: 293 CYNTALR--LCPTHADSLNNLANIKREQGNIEEA 324
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 63/351 (17%), Positives = 121/351 (34%), Gaps = 49/351 (13%)
Query: 131 ILGRAGKIDEA---YR-ILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKAS 186
+AG + A + ++ D + +L RLD++ A
Sbjct: 8 REYQAGDFEAAERHCMQLWRQEPD-----NTGVLLLLSSIHFQCRRLDRSAHFS--TLAI 60
Query: 187 SHQPDQV-TYITLLDKFSDCGNIEVVKEFWSQMVA--DGYAADVVTYTIFVDALCKVGNV 243
P Y L + + + G ++ E + + + Y AL G++
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID---GYINLAAALVAAGDM 117
Query: 244 EEAFSILDLMRGEGILPNLH-TYNTLICGLLRLDRVEEALEVFNNMEILGVQPT-AYTYI 301
E A + + P+L+ + L L L R+EEA + + + QP A +
Sbjct: 118 EGA--VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL--KAIETQPNFAVAWS 173
Query: 302 LFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYS-----LAETGRIGEAKTIFN 356
+ + A+ FEK + + PN Y L E A +
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKA-VT-LDPN----FLDAYINLGNVLKEARIFDRAVAAYL 227
Query: 357 ---GLKNSGFAPDSV-TYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPD-VIVMNTLIDT 411
L P+ + + Y + G +D A+ +E +P L +
Sbjct: 228 RALSLS-----PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANA 280
Query: 412 LYKADRVDEAWEMFCRMKDMKLAPT-VVTYNTLLSGLGKEGQVQKAIELFE 461
L + V EA + + ++L PT + N L + ++G +++A+ L+
Sbjct: 281 LKEKGSVAEAEDCYNTA--LRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 49/381 (12%), Positives = 96/381 (25%), Gaps = 62/381 (16%)
Query: 156 DVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQV-TYITLLDKFSDCGNIEVVKEF 214
VV + + + + A P+QV + ++ +
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPEQVVAIASHDGGKQALETVQALLPV 162
Query: 215 WSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLH-TYNTLICGLL 273
Q VV + V+ + L + G+ P + G
Sbjct: 163 LCQAHGL-TPEQVVAIASNGGGKQALETVQRL--LPVLCQAHGLTPQQVVAIASNGGGKQ 219
Query: 274 RLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVV 333
L+ V+ L V + G+ P + G
Sbjct: 220 ALETVQRLLPVLC--QAHGLTPQ------QVVAIA----------------SNGGG---- 251
Query: 334 SCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSV-TYNMMMKCYSKVGQVDEAVTLLSE 392
+ + + G P V + V + +L +
Sbjct: 252 --------KQALETVQRLLPVLC--QAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ 301
Query: 393 MVENGCEPD-VIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPT-VVTYNTLLSGLGKE 450
P V+ + + + V + C + L P VV + G
Sbjct: 302 AHG--LTPQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASHDGGKQAL 357
Query: 451 GQVQKAIELFEGMTDHGCFPN-TVTFNTLLHCLCKNEEVDLAMKML---YEMTPRNCWPD 506
VQ+ + + HG P V + E V + +L + +TP
Sbjct: 358 ETVQRLLPVLC--QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE----Q 411
Query: 507 VLTYNTIIYGLVKEQRVKDAI 527
V+ + G + V+ +
Sbjct: 412 VVAIASHDGGKQALETVQRLL 432
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 54/424 (12%), Positives = 111/424 (26%), Gaps = 75/424 (17%)
Query: 52 AYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLE 111
A + + L++ + L V + G+ P + A+ G ++ ++TV LL
Sbjct: 108 AIASHDGGKQALETV--QRLLPVLCQAH--GLTP--EQVVAIASHDGGKQALETVQALLP 161
Query: 112 EMER-LGLRPN-VYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPD-VVTYTVLIDALC 168
+ + GL P V + +L + G P VV
Sbjct: 162 VLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASNGGGKQ 219
Query: 169 TAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYA---- 224
+ + + + A P QV + G + E +++
Sbjct: 220 ALETVQRLLPVLCQ--AHGLTPQQV------VAIASNGGGKQALETVQRLLPV-LCQAHG 270
Query: 225 ---ADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLH-TYNTLICGLLRLDRVEE 280
VV + V+ + L + G+ P + G L+ V+
Sbjct: 271 LTPQQVVAIASNSGGKQALETVQRL--LPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 328
Query: 281 ALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLY 340
L V + G+ P +
Sbjct: 329 LLPVLC--QAHGLTP---------QQV-------------VAIASHDGG----------- 353
Query: 341 SLAETGRIGEAKTIFNGLKNSGFAPD-SVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCE 399
+ + + G P+ V + V + +L +
Sbjct: 354 -KQALETVQRLLPVLC--QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG--LT 408
Query: 400 PD-VIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPT-VVTYNTLLSGLGKEGQVQKAI 457
P+ V+ + + + V + C + L P VV + G + +
Sbjct: 409 PEQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGRPALESIVAQL 466
Query: 458 ELFE 461
+
Sbjct: 467 SRPD 470
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 3e-08
Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRP 821
+ G +EEA +L+ + L+ P ++ L + + G ++ A +K+ I+ I P
Sbjct: 19 KREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISP 74
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
+YS + + L + V AL + +++N AD ++ + + SG I EA++
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA--HSNLASIHKDSGNIPEAIA 132
Query: 880 LFDEMKKRGISPDLYTYNSLILNLGRA 906
+ + PD + NL
Sbjct: 133 SYR--TALKLKPD---FPDAYCNLAHC 154
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 4e-08
Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 9/159 (5%)
Query: 759 LIDGLSKSGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQMIKG 817
+ L+ R + + + N + + + + + A Q
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD-- 128
Query: 818 GIRPDLKSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEE 876
L+ ++ V L + R+D A ++ + T ++ ++++
Sbjct: 129 ----SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184
Query: 877 ALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKL 915
A +F EM + SP L N G E A +
Sbjct: 185 AYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGV 222
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 3e-06
Identities = 45/252 (17%), Positives = 73/252 (28%), Gaps = 21/252 (8%)
Query: 68 CREALAVYKRVVSEGIK---PSLKTYSAL-MVAAGKRRNIKTVMNLLEEMERLGLRPNVY 123
A Y V+ E P L+ A R V L EM R N
Sbjct: 43 AYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT 102
Query: 124 TFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKM 183
+ I D A R L + D C + + L RLD A++ KM
Sbjct: 103 FLLMAASIYFYDQNPDAALRTLHQGDSLEC------MAMTVQILLKLDRLDLARKELKKM 156
Query: 184 KASSHQPDQVTYITLLDKFSDCGNIEVVKE--FWSQMVADGYAADVVTYTIFVDALCKVG 241
+ D S E +++ + Q +AD + ++ G
Sbjct: 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 214
Query: 242 NVEEAFSILDLMRGEGILP-NLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTY 300
E A +L + T L+ L + E + + ++ ++
Sbjct: 215 RWEAAEGVLQ--EALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLS-QLKDAHR---SH 268
Query: 301 ILFIDYYGKSAD 312
+Y K D
Sbjct: 269 PFIKEYRAKEND 280
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 6e-08
Identities = 22/169 (13%), Positives = 53/169 (31%), Gaps = 12/169 (7%)
Query: 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNI 793
D+ ++ V + L K+ ++A ++E+L PN V
Sbjct: 36 DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEA 93
Query: 794 LINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG-RVDDALHYFEE-LK 850
G + A +++++++ + D L + L + + + L + L
Sbjct: 94 CAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151
Query: 851 LNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSL 899
+ + R E+A + ++ P +L
Sbjct: 152 SPTKMQY--ARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 25/171 (14%)
Query: 763 LSKSGRLEEAKKLFEEML---------------DYGCKPNCVIYNILINGFGKTGDVETA 807
++G+ +A F + + D + + + L + K + + A
Sbjct: 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA 73
Query: 808 CELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMI 865
+K++++ P ++ + G+ DAL +E+ L+L + F+
Sbjct: 74 YLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA--NIFLG 129
Query: 866 NGLGRSG-RIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARK 914
N + + ++ L KK + Y L+ E+AR
Sbjct: 130 NYYYLTAEQEKKKLETDY--KKLSSPTKMQYARYRDGLSKLFTTRYEKARN 178
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 18/154 (11%), Positives = 56/154 (36%), Gaps = 12/154 (7%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
L R + + ++L+ P + +Y + + ++G+ + ++ P
Sbjct: 315 LFVRSRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHP 370
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
+ ++ + V ++ +A YF + ++ ++ + G ++A+S
Sbjct: 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP--AWIGFAHSFAIEGEHDQAIS 428
Query: 880 LFDEMKKRGISPDLYT-YNSLILNLGRAGMVEEA 912
+ + + + Y L + + G + A
Sbjct: 429 AYTTAAR--LFQGTHLPYLFLGMQHMQLGNILLA 460
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 12/158 (7%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
L+ +E K F++ +D P Y + D + A E F++ + P
Sbjct: 286 LADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNP 341
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
+ Y L L G+ ++ +F E + F L G + A+
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV--PTFFAEILTDRGDFDTAIK 399
Query: 880 LFDEMKKRGISPDLYT-YNSLILNLGRAGMVEEARKLA 916
+D K+ + + + +G+A ++
Sbjct: 400 QYDIAKR--LEEVQEKIHVGIGPLIGKATILARQSSQD 435
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 21/170 (12%), Positives = 51/170 (30%), Gaps = 30/170 (17%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
L K G+ E++ F E P + GD +TA + + + +
Sbjct: 354 LYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR--LEE 409
Query: 822 D-----------------LKSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNF 863
L S + + A+ + +L+ +
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ--AKIG 467
Query: 864 MINGLGRSGRIEEALSLFDEMKKRGISPDLY-TYNSLILNLGRAGMVEEA 912
+ + +I+EA+ LF++ ++ + + A +++
Sbjct: 468 LAQLKLQMEKIDEAIELFEDSAI--LARTMDEKLQATTFA--EAAKIQKR 513
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 33/216 (15%), Positives = 61/216 (28%), Gaps = 29/216 (13%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRP 821
+ EA K ++ ++ PN V Y+ + + TGD+E E + ++ I+P
Sbjct: 35 FFTAKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALE--IKP 90
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEELKLNG-----------------------LDAD 857
D K+ +G DA+ L LNG +
Sbjct: 91 DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENL 150
Query: 858 TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAG 917
+ L + + +FD + Y++ L A + G
Sbjct: 151 SKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210
Query: 918 GNCFVQPSEFVSSELQVIYAENPRATSLSHKHCEYL 953
+ + + N L L
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALAL 246
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 23/168 (13%), Positives = 46/168 (27%), Gaps = 24/168 (14%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVI-YNILINGFGKTGDVETACELFKQMIKGGIRP 821
+ AK+ F++ P V Y L K G + F + P
Sbjct: 320 YFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFP 375
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADT--------------ISYNFMI 865
L + + + L G D A+ ++ +L + +
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435
Query: 866 NGLGRSGRIEEALSLFDEMKKRGISPDLY-TYNSLILNLGRAGMVEEA 912
+ A+ L + + + P L + ++EA
Sbjct: 436 PTQLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEA 481
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 9e-04
Identities = 29/238 (12%), Positives = 67/238 (28%), Gaps = 17/238 (7%)
Query: 236 ALCKVGNVEEAFSILDLMRGEGILPNLH-TYNTLICGLLRLDRVEEALEVFNNMEILGVQ 294
G++E+ I + I P+ L +A+ + + + G
Sbjct: 68 CYISTGDLEKV--IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDF 125
Query: 295 PTAYTYILFIDYYGKSA--DPGKALETFEKMKIRGIVPNVVSCNA--------SLYSLAE 344
A + K A + L E + + N + + S+
Sbjct: 126 DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185
Query: 345 TGRIGEAKTIFN-GLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVI 403
+ A + + L+ A D ++ + E +
Sbjct: 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR-ENAAL 244
Query: 404 VMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFE 461
+ + + + +A + + + L PT +Y L L + Q+ + F+
Sbjct: 245 ALCYTGIFHFLKNNLLDAQVLL--QESINLHPTPNSYIFLALTLADKENSQEFFKFFQ 300
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 17/154 (11%), Positives = 44/154 (28%), Gaps = 12/154 (7%)
Query: 766 SGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRPDL- 823
+ + +P + +L + GD ++ + + P
Sbjct: 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHP 57
Query: 824 KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALSLFD 882
++ + L R +A ++ ++ + L +G+ E A + +
Sbjct: 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI--ALWLGHALEDAGQAEAAAAAYT 115
Query: 883 EMKKRGISPDL-YTYNSLILNLGRAGMVEEARKL 915
+ + P+ Y L+ R L
Sbjct: 116 RAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVL 147
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 16/126 (12%), Positives = 31/126 (24%), Gaps = 9/126 (7%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
G + + L P L A L +Q P
Sbjct: 33 ELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD--AAP 88
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
+ L L G+ + A + +L + + ++N R
Sbjct: 89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQ--LLNWRRRLCDWRALDV 146
Query: 880 LFDEMK 885
L +++
Sbjct: 147 LSAQVR 152
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 21/166 (12%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
++ E F++ L N +Y + + A + F + + + P
Sbjct: 280 MADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDP 335
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
+ Y L + DD F E + + NF L ++AL
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV--PNFFAEILTDKNDFDKALK 393
Query: 880 LFDEMKKRGISPD----------LYTYNSLILNLGRAGMVEEARKL 915
+D + + L +L+ EA L
Sbjct: 394 QYDLAIE--LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 18/133 (13%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
+ + ++ + LF E P + N D + A + + I+ +
Sbjct: 348 AYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE--LEN 403
Query: 822 D----------LKSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGR 870
L + L+ V +A + E+ KL+ + + +
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ--AKIGLAQMKLQ 461
Query: 871 SGRIEEALSLFDE 883
I+EA++LF+E
Sbjct: 462 QEDIDEAITLFEE 474
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 7/138 (5%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD 822
++ + ++A K + L+ K + V Y+ L + GD++ E+ + ++ ++PD
Sbjct: 16 FFRNKKYDDAIKYYNWALE--LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALE--LKPD 71
Query: 823 L-KSYSVLVDCLCMVGRVDDALHYFEE--LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
K +G+ DA+ L + DA +++E
Sbjct: 72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFG 131
Query: 880 LFDEMKKRGISPDLYTYN 897
D
Sbjct: 132 DIDTATATPTELSTQPAK 149
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 5e-07
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 20/158 (12%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
+K+GR +A L E++ D V + L + KTG V+ EL ++ + P
Sbjct: 18 HAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAP 73
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
D K +VL V + D A+ + + N ++ + + L GR +EA+
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV--RFRLGVALDNLGRFDEAID 131
Query: 880 LFDEMKKRGISPDLY-TYNSLILNLGRA----GMVEEA 912
F G+ P+ + + + G EEA
Sbjct: 132 SFK--IALGLRPNEGKVHR----AIAFSYEQMGRHEEA 163
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
K+G ++ +L E L P+ V + +L + + + A L ++ + P
Sbjct: 52 YVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE--ANP 107
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
L L +GR D+A+ F+ L L + + + + GR EEAL
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV--HRAIAFSYEQMGRHEEALP 165
Query: 880 LFD 882
F
Sbjct: 166 HFK 168
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 7e-07
Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 24/168 (14%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
A +++L+ + + F K G+ A K K ++
Sbjct: 130 AFDGADYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASK--LKS 185
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMI----------NGLG 869
D +++ + +G + +L E LKL+ ++ + L
Sbjct: 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245
Query: 870 RSGRIEEALSLFDEMKKRGISPDLYTYNSLIL-NLGRA----GMVEEA 912
R GR +A S ++ + K P + Y + EA
Sbjct: 246 RDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEA 291
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 40/268 (14%), Positives = 79/268 (29%), Gaps = 44/268 (16%)
Query: 171 GRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTY 230
G+LD+A++ F K P + +E A ++
Sbjct: 85 GKLDEAEDDF--KKVLKSNPSE-------------------QEEKEAESQLVKADEMQRL 123
Query: 231 TIFVDALCKVGNVEEAFSILDLMRGEGILPN-LHTYNTLICGLLRLDRVEEALEVFNN-M 288
+ A I L + + ++ +A+
Sbjct: 124 RSQALDAFDGADYTAA--ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 181
Query: 289 EILGVQPTAYTYILFIDYYGKSADPGKALETFEK-----------MKIRGIVPNVVSCNA 337
++ A+ Y + YY + D +L + V +
Sbjct: 182 KLKSDNTEAF-YKISTLYY-QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 239
Query: 338 SLYSLAETGRIGEAKTIFN---GLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMV 394
S L GR +A + + + S + + C+SK + EA+ + SE++
Sbjct: 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299
Query: 395 ENGCEPD-VIVMNTLIDTLYKADRVDEA 421
+ EPD V + + + DEA
Sbjct: 300 Q--MEPDNVNALKDRAEAYLIEEMYDEA 325
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 26/179 (14%), Positives = 51/179 (28%), Gaps = 35/179 (19%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPN----------------CVIYNILINGFGKTGDVET 806
L K G+L+EA+ F+++L P+ D
Sbjct: 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA 138
Query: 807 ACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFM 864
A ++++ + + + +C G A+ + KL + + ++ +
Sbjct: 139 AITFLDKILE--VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE--AFYKI 194
Query: 865 INGLGRSGRIEEALSLFDE-----------MKKRGISPDLYTYNSLILNLGRAGMVEEA 912
+ G E +LS E L L R G +A
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 39/253 (15%), Positives = 70/253 (27%), Gaps = 42/253 (16%)
Query: 683 ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSN---------- 732
+ NLL G+ E L+ + + + + S + N
Sbjct: 51 ATMCNLLAYLKHLKGQNEAALECLRK-AEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR 109
Query: 733 ------SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG--RLEEAKKLFEEMLDYGC 784
+DK + S +P K G + E AK FE+ L+
Sbjct: 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE--K 167
Query: 785 KPNCVIYN----ILINGFGKTGDVETACELFKQMIKGGIRPDLKSY-----SVLVDCLCM 835
KP + I + A + +Q I+ + PD + L
Sbjct: 168 KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR--LNPDNQYLKVLLALKLHKMREE 225
Query: 836 VGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL- 893
+ EE L+ D R ++A+ L + + P+
Sbjct: 226 GEEEGEGEKLVEEALEKAPGVTDV--LRSAAKFYRRKDEPDKAIELLKKALE--YIPNNA 281
Query: 894 YTYNSLILNLGRA 906
Y + +G
Sbjct: 282 YLHC----QIGCC 290
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 9/133 (6%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVI-YNILINGFGKTGDVETACELFKQMIKGGIRP 821
L + R EEA + E P + L + A E F++ ++ +
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNR 172
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
+ + D L A Y++ + G +A S I + A S
Sbjct: 173 NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR--SLLLGIRLAKVFEDRDTAAS 230
Query: 880 LFDEMKKRGISPD 892
++K+ + P
Sbjct: 231 YGLQLKR--LYPG 241
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 30/168 (17%), Positives = 48/168 (28%), Gaps = 30/168 (17%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
L GR + A LFE L P L K G V A E K ++ P
Sbjct: 15 LYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTP 70
Query: 822 DL------------KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGL 868
Y D G ++ AL ++ ++N A +
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL--HLQRGLVY 128
Query: 869 GRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA----GMVEEA 912
G ++A + + + + L G ++EA
Sbjct: 129 ALLGERDKAEASLK--QALALEDTPEIRS----ALAELYLSMGRLDEA 170
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 24/165 (14%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPN------------CVIYNILINGFGKTGDVETACEL 810
K G + A + + ++ P +Y + G +E A +
Sbjct: 49 QLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV 106
Query: 811 FKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGL 868
K + + P + ++G D A ++ L L + + +
Sbjct: 107 LKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEI--RSALAELY 161
Query: 869 GRSGRIEEALSLFDEMKKRGISPDLY-TYNSLILNLGRAGMVEEA 912
GR++EAL+ + + + +P L G EEA
Sbjct: 162 LSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEA 204
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 20/158 (12%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
LS LE A +++ L+ + Y N + + A ++F++ ++
Sbjct: 67 LSSVNELERALAFYDKALEL--DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AGM 122
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
+ + +L L + + AL Y + ++LN D + L G ++EALS
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA--RFQFGMCLANEGMLDEALS 180
Query: 880 LFDEMKKRGISPDLY-TYNSLILNLGRA----GMVEEA 912
F + + P + N G E+A
Sbjct: 181 QFAAVTE--QDPGHADAFY----NAGVTYAYKENREKA 212
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 8e-05
Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
+EAK +FE+ L ++ +L K + A ++ ++ +
Sbjct: 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNE 156
Query: 822 DL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
+ ++ CL G +D+AL F + + AD + E+AL
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA--FYNAGVTYAYKENREKALE 214
Query: 880 LFD 882
+ D
Sbjct: 215 MLD 217
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 24/168 (14%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
SG A +++L+ + + F K G+ A K K ++
Sbjct: 153 AFGSGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASK--LKN 208
Query: 822 D-LKSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMI----------NGLG 869
D +++ + +G + +L E LKL+ ++ + L
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268
Query: 870 RSGRIEEALSLFDEMKKRGISPDLYTYNSLIL-NLGRA----GMVEEA 912
R GR +A S ++ + K P + Y + EA
Sbjct: 269 RDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEA 314
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 40/279 (14%), Positives = 80/279 (28%), Gaps = 48/279 (17%)
Query: 166 ALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAA 225
L G+LD+A++ F K P + E +
Sbjct: 103 LLLKQGKLDEAEDDFKK--VLKSNPSE-------------------NEEKEAQSQLIKSD 141
Query: 226 DVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPN-LHTYNTLICGLLRLDRVEEALEV 284
++ G+ A I L + + ++ +A+
Sbjct: 142 EMQRLRSQALNAFGSGDYTAA--IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199
Query: 285 FNNMEILGVQPT---AYTYILFIDYYGKSADPGKALETFEK-----------MKIRGIVP 330
++ A+ I + Y D +L + V
Sbjct: 200 LK--AASKLKNDNTEAFYKISTLYYQ--LGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 255
Query: 331 NVVSCNASLYSLAETGRIGEAKTIFNG---LKNSGFAPDSVTYNMMMKCYSKVGQVDEAV 387
+ S L GR +A + + + S + + C+SK + EA+
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315
Query: 388 TLLSEMVENGCEPD-VIVMNTLIDTLYKADRVDEAWEMF 425
+ SE+++ EPD V + + + DEA + +
Sbjct: 316 RVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDY 352
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 22/171 (12%), Positives = 42/171 (24%), Gaps = 31/171 (18%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
+ K L EA FE + P + L + A + P
Sbjct: 31 MLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDP 86
Query: 822 D-LKSYSVLVDCLCMVGRVDDALHYFEE-LKLN-------------GLDADTISYNFMIN 866
+ ++ L + AL L +D D ++
Sbjct: 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146
Query: 867 GLGRSGRIEEALSLFDEMKKRGISPDLY-TYNSLILNLGRA----GMVEEA 912
E +L + ++P+ + +LG + A
Sbjct: 147 FFAAPNEYRECRTLLHAALE--MNPNDAQLHA----SLGVLYNLSNNYDSA 191
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 24/178 (13%), Positives = 51/178 (28%), Gaps = 16/178 (8%)
Query: 739 DLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILING 797
L + + E + L L+ PN ++ L
Sbjct: 124 QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVL 181
Query: 798 FGKTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLD 855
+ + + ++A ++ ++ +RPD + ++ L L R +AL + L +N
Sbjct: 182 YNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239
Query: 856 ADTISYNFMINGLGRSGRIEEALSLFD---EMKKRGISPDLYTYN----SLILNLGRA 906
M + + A M+ G +P S+
Sbjct: 240 VR--VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 23/173 (13%), Positives = 44/173 (25%), Gaps = 33/173 (19%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
+ G L A LFE + P + + L + A ++ ++ ++P
Sbjct: 74 RLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLE--LKP 129
Query: 822 D-LKSYSVLVDCLCMVGRVDDALHYFEE-LKLN--------GLDADTISYNF-----MIN 866
D + L A + L+ + ++
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189
Query: 867 GLGRSGRIEEALSLFDEMKKRGISPDLY---TYNSLILNLGRA----GMVEEA 912
L E LF + + P LG G ++A
Sbjct: 190 SLLSDSLFLEVKELFLAAVR--LDPTSIDPDVQC----GLGVLFNLSGEYDKA 236
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 32/170 (18%), Positives = 51/170 (30%), Gaps = 32/170 (18%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVI-YNILINGFGKTGDVETACELFKQMIKGGIRP 821
+++ + A + L+ +PN + L + T + ACE K IK P
Sbjct: 109 QAENENEQAAIVALQRCLEL--QPNNLKALMALAVSYTNTSHQQDACEALKNWIK--QNP 164
Query: 822 DLKS-YSVLVDCLCMVGRVDDALH-----------YFEELKLNGLDADTISYNFMINGLG 869
K + R+ + Y E NG D +
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224
Query: 870 RSGRIEEALSLFDEMKKRGIS--PDLY-TYNSLILNLGRA----GMVEEA 912
SG A+ F ++ P+ Y +N LG EEA
Sbjct: 225 LSGEFNRAIDAF----NAALTVRPEDYSLWN----RLGATLANGDRSEEA 266
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 22/164 (13%), Positives = 45/164 (27%), Gaps = 20/164 (12%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
K G L E + P + L + + + A ++ ++ ++P
Sbjct: 75 RLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLE--LQP 130
Query: 822 D-LKSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEALS 879
+ LK+ L DA + +K N G + R+ ++
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL--VKNKKGSPGLTRRMSKSPV 188
Query: 880 LFDEMKK-----------RGISPDLYTYNSLILNLGRAGMVEEA 912
++ G D L + +G A
Sbjct: 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 19/162 (11%)
Query: 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIR 820
+ +A E+ L P + + + + A E F+Q + I+
Sbjct: 17 EYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IK 72
Query: 821 PDL-KSYSVLVDCLCM-VGRVDDALHYFE---ELKLNGLDADTISYNFMINGLGRSGRIE 875
PD + + LC + R +++ YF+ + G+
Sbjct: 73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIA--NLNKGICSAKQGQFG 130
Query: 876 EALSLFDEMKKRGIS--PDL-YTYNSLILNLGRAGMVEEARK 914
A + KR ++ P + L AG + +A
Sbjct: 131 LAEAYL----KRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 24/208 (11%)
Query: 264 TYNTLICGLLRLDRVEEALEVFNNMEILGVQPT-AYTYILFIDYYGKSADPGKALETFEK 322
L +R +A + L P +++ + Y KA E+F +
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIE--DALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67
Query: 323 -MKIRGIVPNVVSCNASLYS------LAETGRIGEAKTIFNG-LKNSGFAPDSVTYNMMM 374
+ I+ P+ +A + + R E+ F+ L + + +
Sbjct: 68 ALSIK---PD----SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG 120
Query: 375 KCYSKVGQVDEAVTLLSEMVENGCEPD-VIVMNTLIDTLYKADRVDEAWEMFCRMKDMKL 433
C +K GQ A L + +P L T A ++ +A F +
Sbjct: 121 ICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAGQLGDADYYFKKY--QSR 176
Query: 434 APTVVTYNTLLSGLGKEGQVQKAIELFE 461
V+ + LL G + A +E
Sbjct: 177 VE-VLQADDLLLGWKIAKALGNAQAAYE 203
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 17/155 (10%), Positives = 46/155 (29%), Gaps = 13/155 (8%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
+ + KL +++ P + I + L +++ + P
Sbjct: 32 HYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVD--LYP 87
Query: 822 DL-KSYSVLVDCLCMVGRVDD-ALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEEAL 878
S+ + MVG ++ A Y + L ++ + ++A+
Sbjct: 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP--AWIAYGHSFAVESEHDQAM 145
Query: 879 SLFDEMKKRGISPDLYT-YNSLILNLGRAGMVEEA 912
+ + + + + + L G + A
Sbjct: 146 AAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNSKLA 178
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 14/130 (10%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV--------IYNILINGFGKTGDVETACELFKQM 814
++G + A+K F + L+ + N L + K A + +Q
Sbjct: 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262
Query: 815 IKGGIRPDLKS-YSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSG 872
+ + P S YS + ++G ++A+ YF L L D S + + +
Sbjct: 263 LV--LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF--SVTMLGHCIEMYI 318
Query: 873 RIEEALSLFD 882
EA D
Sbjct: 319 GDSEAYIGAD 328
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVIYNI-LINGFGKTGDVETACELFKQMIKGGIRP 821
++G+ ++A+K+F+ + Y + L G E A + + +
Sbjct: 28 QYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL--MDI 83
Query: 822 -DLKSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDAD 857
+ + +C +G +D A F L
Sbjct: 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 27/180 (15%)
Query: 763 LSKSGRLEEAKKLFEEMLD-----YGCK-PNCVI-YNILINGFGKTGDVETACELFKQMI 815
K G+ +EA+ L + L+ G P+ N L G E +++ +
Sbjct: 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154
Query: 816 KGGIR------PD-LKSYSVLVDCLCMVGRVDDALHYFEE------LKLNGLD-ADT-IS 860
+ P+ K+ + L C G+ DA ++E K G D
Sbjct: 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214
Query: 861 YNFMINGLGRSGRIEEALSLFD-EMKKRGISPD----LYTYNSLILNLGRAGMVEEARKL 915
+ + ++ + + D T SL R G +E A L
Sbjct: 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 20/169 (11%)
Query: 767 GRLEEAKKLFEEMLDY----GCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD 822
G +EA++L + L+ V ++L G++ + L +Q + + D
Sbjct: 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 87
Query: 823 -----LKSYSVLVDCLCMVGRVDDALHYF-------EELKLNGLDADTISYNFMINGLGR 870
L S + L G + A E L L L
Sbjct: 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147
Query: 871 SGRIEEALSLFDE----MKKRGISPDLYTYNSLILNLGRAGMVEEARKL 915
R++EA + + L LI G ++ AR
Sbjct: 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ 196
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 6e-04
Identities = 31/204 (15%), Positives = 67/204 (32%), Gaps = 10/204 (4%)
Query: 63 LQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNV 122
F EA +Y+R +S +K ++ Y A R + V ++ + +
Sbjct: 75 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 134
Query: 123 YTFTICIRILGRAGKIDEAYRILKR-MDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFL 181
+ ++ RA I I K+ +D V L++ C + A +IF
Sbjct: 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC-SKDKSVAFKIFE 193
Query: 182 K-MKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVT---YTIFVDAL 237
+K P+ + +D S + + +++ G + + F+
Sbjct: 194 LGLKKYGDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251
Query: 238 CKVGNVEEAFSILDLMRGEGILPN 261
+G++ + R
Sbjct: 252 SNIGDLASILKVEK--RRFTAFRE 273
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 9e-04
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 6/100 (6%)
Query: 767 GRLEEAKKLFEEMLDYGCKP--NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-L 823
G +A +E+ + G + Y L + F G+ A + +K P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQ 61
Query: 824 KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDADTISYN 862
L +GR + + + + D SY
Sbjct: 62 ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK 101
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 9e-04
Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 763 LSKSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP 821
L GR + A+ PN L K + + A E+ KQ +
Sbjct: 121 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQ-AKEVLKQHFE--KSD 175
Query: 822 DLKSYSVLVDC----LCMVGRVDDALHYFEE-LKLNGLDADTISYNFMINGLGRSGRIEE 876
+ +V+ + ++ + L ++T ++ G ++
Sbjct: 176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET--NFYLGKYYLSLGDLDS 233
Query: 877 ALSLFDEMKKRGIS--PDLY-TYNSLILNLGRAGMVEEA 912
A +LF K ++ + + +L L G ++
Sbjct: 234 ATALF----KLAVANNVHNFVEHRYALLELSLLGQDQDD 268
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 9e-04
Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 27/180 (15%)
Query: 763 LSKSGRLEEAKKLFEEMLD-----YGCK-PNCVI-YNILINGFGKTGDVETACELFKQMI 815
K G+ +EA+ L + L+ G P+ N L G E +++ +
Sbjct: 121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180
Query: 816 KGGIR------PD-LKSYSVLVDCLCMVGRVDDALHYFEE------LKLNGLD-ADT-IS 860
+ P+ K+ + L C G+ A ++E + G +
Sbjct: 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240
Query: 861 YNFMINGLGRSGRIEEALSLFD-EMKKRGISPD----LYTYNSLILNLGRAGMVEEARKL 915
+ G+ ++ S + + D T +L R G E A L
Sbjct: 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 967 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.96 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.77 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.74 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.67 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.66 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.6 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.57 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.56 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.55 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.51 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.51 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.51 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.45 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.44 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.43 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.42 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.42 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.41 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.41 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.4 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.4 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.38 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.32 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.27 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.25 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.24 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.23 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.22 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.2 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.2 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.16 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.16 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.15 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.15 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.12 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.11 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.11 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.11 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.1 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.09 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.09 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.08 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.08 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.07 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.07 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.05 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.02 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.99 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.98 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.96 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.94 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.94 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.92 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.92 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.91 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.91 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.91 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.89 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.86 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.86 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.85 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.85 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.84 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.83 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.83 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.83 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.83 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.82 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.79 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.79 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.79 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.78 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.78 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.78 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.78 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.77 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.77 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.75 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.75 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.74 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.74 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.73 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.73 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.73 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.72 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.7 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.68 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.68 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.67 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.64 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.63 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.63 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.63 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.61 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.61 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.6 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.59 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.59 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.56 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.56 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.53 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.53 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.51 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.5 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.49 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.46 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.46 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.45 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.44 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.42 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.42 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.4 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.38 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.37 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.33 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.31 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.19 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.15 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.15 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.1 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.09 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.07 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.04 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.99 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.96 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.92 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.8 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.79 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.65 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.64 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.45 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.45 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.4 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.35 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.32 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.22 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.19 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.12 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.08 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.08 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.03 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.99 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.86 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.75 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.56 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.41 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.04 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.78 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.71 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.6 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.54 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.51 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.27 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.21 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.18 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.06 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.73 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.69 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.66 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.64 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.51 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.16 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.83 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.35 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.57 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.27 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 89.82 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.45 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 88.32 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.87 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.59 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.23 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.47 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.41 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.14 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.56 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 83.3 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.87 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.78 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 81.53 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.27 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.09 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=357.84 Aligned_cols=505 Identities=10% Similarity=-0.026 Sum_probs=380.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048794 365 PDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLL 444 (967)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 444 (967)
++...|+.++..|.+.|++++|..+++.+... .|+..++..++.+|.+.|++++|...|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 34555666666666666666666666666543 345555555666666666666666666655332 34555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHh
Q 048794 445 SGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVK 524 (967)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 524 (967)
.+|.+.|++++|.++|+++... +.. ...+...+ -...+.+.+..+|..++..|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPF----RKD-----EKNANKLL-----------MQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTT----C--------------------------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCCc----ccc-----cccccccc-----------ccccccchhHHHHHHHHHHHHHcCCHH
Confidence 6666666666666655532111 100 00000000 011223345778888899999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHH---HHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHH
Q 048794 525 DAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRL---AKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAE 601 (967)
Q Consensus 525 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (967)
+|+..|+++.+..|.+...+..++..+...+..+.+... +.....
T Consensus 218 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-------------------------------- 265 (597)
T 2xpi_A 218 RAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK-------------------------------- 265 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG--------------------------------
T ss_pred HHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccccc--------------------------------
Confidence 999999999888888888877777666554333222110 000000
Q ss_pred HHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 048794 602 KLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAP 681 (967)
Q Consensus 602 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 681 (967)
.+......++..++..|.+.|++++|..+|+++... +++..++..++..+.+.|++++|+.+|+++.+.++ .
T Consensus 266 ----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 337 (597)
T 2xpi_A 266 ----EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-Y 337 (597)
T ss_dssp ----GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred ----chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-c
Confidence 000000111223356678899999999999988654 57899999999999999999999999999998763 4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
+..++..++.++.+.|++++|..+++++.... +.+..++..++..|.+.|++++|..+|+++.... +.+..++..++.
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 415 (597)
T 2xpi_A 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAH 415 (597)
T ss_dssp CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 77889999999999999999999999998764 5577889999999999999999999999998863 456678999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDD 841 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 841 (967)
+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|+++|+++++. .+.+..++..++.+|.+.|++++
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-FQYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999864 447889999999999999999999999999984 23357899999999999999999
Q ss_pred HHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHh
Q 048794 842 ALHYFEELKLN----GLDAD--TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKL 915 (967)
Q Consensus 842 A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 915 (967)
|.++|+++++. +..|+ ..++..++.+|.+.|++++|.+.++++.+. .+.+..+|..++.++.+.|++++|+++
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-STNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999864 55676 789999999999999999999999999975 355789999999999999999999999
Q ss_pred hcCCCcCCCCcccc-ccceeeecc
Q 048794 916 AGGNCFVQPSEFVS-SELQVIYAE 938 (967)
Q Consensus 916 ~~~~l~~~p~~~~~-~~l~~~~~~ 938 (967)
++++++++|+++.+ ..|+++|.+
T Consensus 573 ~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 573 LHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999998 688888764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=346.24 Aligned_cols=489 Identities=10% Similarity=-0.035 Sum_probs=340.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048794 331 NVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLID 410 (967)
Q Consensus 331 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 410 (967)
+...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|...|++++|..+++.+... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 4445555566666666666666666655532 345555555666666666666666666655432 445556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHH
Q 048794 411 TLYKADRVDEAWEMFCRMKD---------------MKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTF 475 (967)
Q Consensus 411 ~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 475 (967)
+|.+.|++++|..+|+++.. .+...+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 66666666666666653221 1223457788888888888888888888888887753 3345555
Q ss_pred HHHHHHHHhcCCHHHHHHH---HHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHH
Q 048794 476 NTLLHCLCKNEEVDLAMKM---LYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVV 552 (967)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 552 (967)
..+...+...+..+.+... +..+...+..+...++..++..|.+.|++++|..+|+++.+. +++..++..++..+.
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHH
Confidence 5555444333222221111 222322222222334444566677788888888888877765 567777777777777
Q ss_pred hcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHH
Q 048794 553 KDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAK 632 (967)
Q Consensus 553 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 632 (967)
+.|++++|++.+++++...
T Consensus 317 ~~g~~~~A~~~~~~~~~~~------------------------------------------------------------- 335 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID------------------------------------------------------------- 335 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-------------------------------------------------------------
T ss_pred HhcCHHHHHHHHHHHHHcC-------------------------------------------------------------
Confidence 7777777777766655332
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 048794 633 DLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFR 712 (967)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 712 (967)
+.+..++..++..+.+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|+.+|+++...
T Consensus 336 ------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 336 ------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp ------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2344456667777778888888888888887653 346777888888888888888888888888775
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 713 GCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYN 792 (967)
Q Consensus 713 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 792 (967)
. +.+..++..++.+|...|++++|++.|+++...+ +.+..++..++.+|.+.|++++|+++|+++.+.. +.+..+|+
T Consensus 403 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 479 (597)
T 2xpi_A 403 D-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLN 479 (597)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 3 4456788888888888888888888888888764 4456678888889999999999999999988764 34678899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 793 ILINGFGKTGDVETACELFKQMIKG----GIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
.++.+|.+.|++++|+++|+++++. +..|+ ..++..++.+|.+.|++++|...++++++.+ +.+..++..++.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 558 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 9999999999999999999998774 55777 6788899999999999999999999988754 447788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 904 (967)
+|...|++++|.+.++++++. .|.+...+..++.+|.
T Consensus 559 ~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESLAI-SPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHh
Confidence 999999999999999999874 3445577777776553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-30 Score=275.89 Aligned_cols=380 Identities=15% Similarity=0.077 Sum_probs=292.8
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhH
Q 048794 480 HCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIED 559 (967)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 559 (967)
..+...|++++|.+.+..+...+ +.+...+..+...+...|++++|...++.+.+..|.+..++..++..+...|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34445555555555555555443 22334444455555555666666666655555555555555555555555555555
Q ss_pred HHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHH
Q 048794 560 AFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFT 639 (967)
Q Consensus 560 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 639 (967)
|++.+++++..
T Consensus 86 A~~~~~~al~~--------------------------------------------------------------------- 96 (388)
T 1w3b_A 86 AIEHYRHALRL--------------------------------------------------------------------- 96 (388)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHc---------------------------------------------------------------------
Confidence 55555544322
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChh
Q 048794 640 ENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI 719 (967)
Q Consensus 640 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 719 (967)
.|.+...+..++..+...|++++|+..|+++++.+ +.+...+..++..+...|++++|...|+++.... +.+..
T Consensus 97 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 170 (388)
T 1w3b_A 97 ----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV 170 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 14455667778888888888888888888888764 2245567778888889999999999999988764 44567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFG 799 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 799 (967)
++..++.++...|++++|+..|++++..+ +.....+..++.++...|++++|+..|+++++.. +.+..++..++.++.
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHH
Confidence 88888999999999999999999998864 4456678889999999999999999999998863 235778999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEAL 878 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 878 (967)
..|++++|+..|+++++. .|+ ..++..++.++.+.|++++|...++++++.. +.+..++..++.++...|++++|.
T Consensus 249 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999984 565 6789999999999999999999999999763 557888999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCC
Q 048794 879 SLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPR 941 (967)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~ 941 (967)
..++++++. .|.+..++..++.++.+.|++++|+..++++++++|+++.+ +.+|.+|.+.|+
T Consensus 326 ~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 326 RLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999864 44556889999999999999999999999999999999988 688988887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-27 Score=258.07 Aligned_cols=382 Identities=12% Similarity=0.045 Sum_probs=249.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHh
Q 048794 445 SGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVK 524 (967)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 524 (967)
..+.+.|++++|.+.+..+.... |.+...+..+...+...|++++|...++..+..+ +.+...+..++..+...|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 34455666666666666665542 3344555555566666666666666666665553 335566666666677777777
Q ss_pred HHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHH
Q 048794 525 DAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLV 604 (967)
Q Consensus 525 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (967)
+|+..|+++.+..|.+..++..++..+...|++++|++.+++++...
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------------------------- 131 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------------------------------- 131 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------
Confidence 77777777766666666666666666666676666666666554332
Q ss_pred hcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh
Q 048794 605 CNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIS 684 (967)
Q Consensus 605 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 684 (967)
+.....+..++..+...|++++|+..|+++++.. +.+..
T Consensus 132 ----------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 170 (388)
T 1w3b_A 132 ----------------------------------------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV 170 (388)
T ss_dssp ----------------------------------------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ----------------------------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 2223344455555566666666666666666543 22455
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHH
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLS 764 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 764 (967)
++..++..+...|++++|+..|+++...+ +.+...+..++.++...|++++|+..+++++... +.+..++..++.+|.
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHH
Confidence 66666777777777777777777776653 3345566666777777777777777777766653 334556677777777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 844 (967)
..|++++|+..|+++.+.. +.+..+|..++.++.+.|++++|+..|+++++. .+++..++..++.++...|++++|..
T Consensus 249 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777777753 224557777777777777888888888877764 13346677777777777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 048794 845 YFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGM 908 (967)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 908 (967)
.++++++.. +.+..++..++.+|.+.|++++|.+.++++++. .|....++..++.++...|+
T Consensus 327 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 327 LYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHhHHHHHHHccC
Confidence 887777642 345667777777888888888888888877753 23345777777777766653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-22 Score=232.13 Aligned_cols=831 Identities=12% Similarity=0.131 Sum_probs=477.3
Q ss_pred HHHHHHccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 048794 5 FDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIK 84 (967)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 84 (967)
+..-.+-|+|..-..|..-|..+...|++++|-.+-..... |+-.++.+.+.+-++-...|+..-.+..|..+.+.| +
T Consensus 349 ~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~sp~-giLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g-~ 426 (1630)
T 1xi4_A 349 LRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-Q 426 (1630)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-C
Confidence 34456778888888888889999999999998777666543 223356666666555555666666666666666665 3
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-----cC--C-CCc----------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 85 PSLKTYSALMVAAGKRRNIKTVMNLLEEMER-----LG--L-RPN----------VYTFTICIRILGRAGKIDEAYRILK 146 (967)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--~-~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~ 146 (967)
.+..----+++....+|+.+-....+.+=+- .| + +.+ ..+..-.+.++++.|+++++..+.+
T Consensus 427 Ln~~eSlEl~r~vl~q~r~~lle~Wl~e~KL~~SEeLGDlv~~~d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~ 506 (1630)
T 1xi4_A 427 LNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAK 506 (1630)
T ss_pred CcHHHHHHHHHHHHHhchHHHHHHHHHhCCccccHHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHhCCHHHHHHHHh
Confidence 4443333344444444444433333322100 00 0 000 0111234556666666666666644
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-
Q 048794 147 RMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAA- 225 (967)
Q Consensus 147 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~- 225 (967)
+ .|..|| |..+++.+.+. +++.|.++...+.+.. |........+..+...+...++..++-+..+.+-+.
T Consensus 507 ~---~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~ 577 (1630)
T 1xi4_A 507 K---VGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSE 577 (1630)
T ss_pred c---cCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhh
Confidence 3 233333 34555555544 4666666666665442 123334455566666666666666665555443211
Q ss_pred ----------------------------cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhcC
Q 048794 226 ----------------------------DVVTYTIFVDALCKVGNVEEAFSILDLMRGE--GILPNLHTYNTLICGLLRL 275 (967)
Q Consensus 226 ----------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~ 275 (967)
+...+..+...|-+.|-++.|++.|.++..- -+.-+...-...+..|...
T Consensus 578 ~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~ 657 (1630)
T 1xi4_A 578 GPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS 657 (1630)
T ss_pred hhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc
Confidence 2223445566777788888888877644321 0000000001122233333
Q ss_pred CCHHHHHHHHHHHHHcCCCC----------------------------------------------CHHHHHHHHHHHhh
Q 048794 276 DRVEEALEVFNNMEILGVQP----------------------------------------------TAYTYILFIDYYGK 309 (967)
Q Consensus 276 ~~~~~a~~~~~~~~~~~~~~----------------------------------------------~~~~~~~l~~~~~~ 309 (967)
=..+.+++.+..|...+++. |+......+.++++
T Consensus 658 l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~ 737 (1630)
T 1xi4_A 658 LSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737 (1630)
T ss_pred CCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 44566666666665433222 33344444555555
Q ss_pred cCChhhHHHHHHH------------HHHcCCCCCc---------c-cHHHHHHHHHhcCCHH------------HHHHHH
Q 048794 310 SADPGKALETFEK------------MKIRGIVPNV---------V-SCNASLYSLAETGRIG------------EAKTIF 355 (967)
Q Consensus 310 ~~~~~~a~~~~~~------------~~~~~~~~~~---------~-~~~~l~~~~~~~g~~~------------~a~~~~ 355 (967)
.|+..+..++.++ +++.. -||. . ....++.-+.+++..+ .+-.+.
T Consensus 738 ~~q~~everi~res~~y~~e~vk~flk~~k-l~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vv 816 (1630)
T 1xi4_A 738 TGQIKEVERICRESNCYDPERVKNFLKEAK-LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVI 816 (1630)
T ss_pred hCCchhhhHHhccCCCCCHHHHHHHHhhCC-CCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhh
Confidence 5555555444322 11110 0110 0 0011111111111111 111111
Q ss_pred HHHHHCCCCCCHHHHH-------------HHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-HHHH
Q 048794 356 NGLKNSGFAPDSVTYN-------------MMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADR-VDEA 421 (967)
Q Consensus 356 ~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A 421 (967)
..+.+. .-+..... .|+...-+.++..--...++.-+..| ..++.++|+|+..|...++ ++.-
T Consensus 817 g~lld~--d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~f 893 (1630)
T 1xi4_A 817 GGLLDV--DCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERF 893 (1630)
T ss_pred hhhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHH
Confidence 111100 00111111 22222222233333334455555555 4577788888888876543 3331
Q ss_pred HH--------HHHHH-HhCCCCCCHHHH------HHHHHHHHhcCCHHH-HH-----------------------HHHHH
Q 048794 422 WE--------MFCRM-KDMKLAPTVVTY------NTLLSGLGKEGQVQK-AI-----------------------ELFEG 462 (967)
Q Consensus 422 ~~--------~~~~~-~~~~~~~~~~~~------~~l~~~~~~~g~~~~-a~-----------------------~~~~~ 462 (967)
+. +..+. .++++..-...| .-++..+.+++-+.. |. .+.+.
T Consensus 894 L~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidq 973 (1630)
T 1xi4_A 894 LRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQ 973 (1630)
T ss_pred hhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 11 01111 111111000001 112222222222221 11 11111
Q ss_pred HHhCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC--CCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcC
Q 048794 463 MTDHGC--FPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNC--WPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLY 538 (967)
Q Consensus 463 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (967)
.....+ ..++.-.....++|...|.+.+|+++++++.-.+. ..+...-+.++.+..+. +.....++..+..+.
T Consensus 974 v~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-- 1050 (1630)
T 1xi4_A 974 VVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-- 1050 (1630)
T ss_pred HHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--
Confidence 111111 12333445566777788888888888888874321 12223334444444444 334444444443321
Q ss_pred CChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHH-
Q 048794 539 PDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVP- 617 (967)
Q Consensus 539 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 617 (967)
....++..+...|.+++|..+|+++-. ...
T Consensus 1051 ----d~~eIA~Iai~lglyEEAf~IYkKa~~---------------------------------------------~~~A 1081 (1630)
T 1xi4_A 1051 ----DAPDIANIAISNELFEEAFAIFRKFDV---------------------------------------------NTSA 1081 (1630)
T ss_pred ----cHHHHHHHHHhCCCHHHHHHHHHHcCC---------------------------------------------HHHH
Confidence 133477778888999999888887411 111
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC
Q 048794 618 IIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG 697 (967)
Q Consensus 618 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 697 (967)
+...+...+++++|.++..++ .++.+|..++.++...|++++|++.|.+. .+...|..++..+.+.|
T Consensus 1082 ~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lG 1148 (1630)
T 1xi4_A 1082 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 1148 (1630)
T ss_pred HHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcC
Confidence 122233778899999998876 45788999999999999999999999553 36777888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHH
Q 048794 698 RVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFE 777 (967)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 777 (967)
++++|+++|..+.+.. +++.....++.+|.+.+++++.... ++ .++...+..++..|...|++++|..+|.
T Consensus 1149 kyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1149 NWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred CHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999888764 3333344588889999888753333 22 3344567789999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048794 778 EMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD 857 (967)
Q Consensus 778 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 857 (967)
.+ ..|..++.+|.+.|++++|++.++++. +..+|..+..+|...|++..|...... +..+
T Consensus 1220 kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~ 1279 (1630)
T 1xi4_A 1220 NV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVH 1279 (1630)
T ss_pred hh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcC
Confidence 86 378899999999999999999999873 447888899999999999999887664 2345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHh--cCCHHHHHHhhcCCCcCCC-----Ccccc
Q 048794 858 TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGR--AGMVEEARKLAGGNCFVQP-----SEFVS 929 (967)
Q Consensus 858 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--~g~~~~A~~~~~~~l~~~p-----~~~~~ 929 (967)
+..+..++..|.+.|.+++|+++++..+. +++.. ..+..|+.++.+ -++..++.++|.+-+.+.| ++...
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~l 1357 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL 1357 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHH
Confidence 66678899999999999999999999984 44443 666666666665 4789999999998888888 55553
Q ss_pred -ccceeeeccCCCccccc
Q 048794 930 -SELQVIYAENPRATSLS 946 (967)
Q Consensus 930 -~~l~~~~~~~g~~~~~~ 946 (967)
..+..+|.+.|+|+.|.
T Consensus 1358 W~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1358 WAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHhcccHHHHH
Confidence 68889999999998876
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-21 Score=220.96 Aligned_cols=825 Identities=14% Similarity=0.118 Sum_probs=503.6
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 048794 40 LEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLR 119 (967)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 119 (967)
+.-+.+.|.+-....|..-...+...|+|.+|..+.-...+ |+--+..|.+..-.+=...|+..-....|.-+.+.| +
T Consensus 349 ~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~sp~-giLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g-~ 426 (1630)
T 1xi4_A 349 LRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-Q 426 (1630)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-C
Confidence 33344444443445666667778889999999888766643 455666677766666667788888888888888877 5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-----CCCC--------HHHHHHHHHHHHhcCChHHHHHHHH
Q 048794 120 PNVYTFTICIRILGRAGKIDEAYRILKRMDD-----EG-----CGPD--------VVTYTVLIDALCTAGRLDQAKEIFL 181 (967)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~ 181 (967)
.|..--.-+++....+|+.+-..+++.+-.- .| ..++ ..+...++.++++.|.++++..+-+
T Consensus 427 Ln~~eSlEl~r~vl~q~r~~lle~Wl~e~KL~~SEeLGDlv~~~d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~ 506 (1630)
T 1xi4_A 427 LNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAK 506 (1630)
T ss_pred CcHHHHHHHHHHHHHhchHHHHHHHHHhCCccccHHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHhCCHHHHHHHHh
Confidence 6665555566666666666666655553210 00 0010 1123567778888888888887755
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-
Q 048794 182 KMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILP- 260 (967)
Q Consensus 182 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~- 260 (967)
+ .|..|| |..|+..+.+. +++.+.++...+.+.. +.......++..+...+.+.++..++-+..+.+-+-
T Consensus 507 ~---~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~ 577 (1630)
T 1xi4_A 507 K---VGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSE 577 (1630)
T ss_pred c---cCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhh
Confidence 4 455665 55677777654 5888888877777653 244556778899999999999999887776654221
Q ss_pred ----------------------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCCC-HHHHHHHHHHHhh
Q 048794 261 ----------------------------NLHTYNTLICGLLRLDRVEEALEVFNNMEIL--GVQPT-AYTYILFIDYYGK 309 (967)
Q Consensus 261 ----------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~ 309 (967)
+..-+..+...|-+.|-+..|++.+.++..- -+..+ ...-..++ .|..
T Consensus 578 ~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~-~~fg 656 (1630)
T 1xi4_A 578 GPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLV-NYFG 656 (1630)
T ss_pred hhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHH-HHHh
Confidence 1222455667788889999999988755321 01100 00111222 2333
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcccHH-------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 310 SADPGKALETFEKMKIRGIVPNVVSCN-------------ASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKC 376 (967)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (967)
.=..+.+.+.++.|...++..+....- .++..+-+.+.++...-.+..+.. ...|..+....|++
T Consensus 657 ~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~--~s~d~~vhfkyi~a 734 (1630)
T 1xi4_A 657 SLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN--FSQDPDVHFKYIQA 734 (1630)
T ss_pred cCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhcc--ccCChHHHHHHHHH
Confidence 456778888888887654443333322 233333333334433333333332 24466667777888
Q ss_pred HHHcCChhHHHHHHHH------------HHHCCCCCChh----------hHHH------------HHHHHHhcCCHHHHH
Q 048794 377 YSKVGQVDEAVTLLSE------------MVENGCEPDVI----------VMNT------------LIDTLYKADRVDEAW 422 (967)
Q Consensus 377 ~~~~~~~~~a~~~~~~------------~~~~~~~~~~~----------~~~~------------l~~~~~~~~~~~~A~ 422 (967)
+++.|++.+.+++.++ +.+.. -+|.. .... .|..|...-++..+-
T Consensus 735 a~~~~q~~everi~res~~y~~e~vk~flk~~k-l~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p 813 (1630)
T 1xi4_A 735 ACKTGQIKEVERICRESNCYDPERVKNFLKEAK-LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLP 813 (1630)
T ss_pred HHHhCCchhhhHHhccCCCCCHHHHHHHHhhCC-CCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccc
Confidence 8888877766665443 11111 01100 0111 122222211111111
Q ss_pred HHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-HHH
Q 048794 423 EMFCRMKDMKLA-----------PTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEE-VDL 490 (967)
Q Consensus 423 ~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 490 (967)
.+...+.+.+.. ........|+..+-+.++..--...++.-...| ..++.++++|+..|..+++ .+.
T Consensus 814 ~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~ 892 (1630)
T 1xi4_A 814 VVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER 892 (1630)
T ss_pred hhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH
Confidence 111111110000 001113445555555555555555555555554 2355555555555553322 221
Q ss_pred H---------HHHHHhhccCCC----------CCC---------HHHHHHHHHHHhhcCcHhHHH-----------HHHH
Q 048794 491 A---------MKMLYEMTPRNC----------WPD---------VLTYNTIIYGLVKEQRVKDAI-----------WFFH 531 (967)
Q Consensus 491 A---------~~~~~~~~~~~~----------~~~---------~~~~~~l~~~~~~~g~~~~A~-----------~~~~ 531 (967)
- .-+=+-..++++ ..| ...|......+.+..+.+--. .+.+
T Consensus 893 fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lid 972 (1630)
T 1xi4_A 893 FLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLID 972 (1630)
T ss_pred HhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHH
Confidence 0 000000001100 001 111222222222222222111 1222
Q ss_pred HHHhh---cCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhh-hhhhhcccCCCcchHHHHHHHHhcC
Q 048794 532 QMRKW---LYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQD-LVGGILTVAGPDKSILFAEKLVCNG 607 (967)
Q Consensus 532 ~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (967)
..... ...++.-.....++|...|.+.+|++++++++.....-.+-..... ++..-++. .+.....+...+-
T Consensus 973 qv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--- 1048 (1630)
T 1xi4_A 973 QVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--- 1048 (1630)
T ss_pred HHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh---
Confidence 21111 1233444556778888999999999999999965441112222222 33333333 2223233322221
Q ss_pred CCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH
Q 048794 608 ICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYN 687 (967)
Q Consensus 608 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 687 (967)
......++..+...|.+++|..+|+++ .....+...+ +...+++++|.+++++.. +..+|.
T Consensus 1049 ----~~d~~eIA~Iai~lglyEEAf~IYkKa------~~~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWs 1109 (1630)
T 1xi4_A 1049 ----NYDAPDIANIAISNELFEEAFAIFRKF------DVNTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWS 1109 (1630)
T ss_pred ----hccHHHHHHHHHhCCCHHHHHHHHHHc------CCHHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHH
Confidence 122455889999999999999999887 1222222222 337788999999887652 477888
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG 767 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 767 (967)
.++.++...|++++|++.|.++ .|...+..++.++.+.|++++|++.+..+.+.. +++.....++.+|.+.+
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 9999999999999999999774 366788899999999999999999999988764 33334445899999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 768 RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFE 847 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 847 (967)
++++...+ ++ .++...|..++..+...|++++|..+|.++ ..|..++.+|.+.|++++|.+.++
T Consensus 1182 rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1182 RLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 98853333 33 356677888999999999999999999986 268999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcc
Q 048794 848 ELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 848 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
++ .+..+|..+..+|...|++..|..+.... ..+++.+..++..|.+.|.+++|+.++++++.++|.|.
T Consensus 1246 KA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1246 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred Hh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence 87 34578999999999999999999887643 34677777999999999999999999999999999998
Q ss_pred cc-ccceeeecc
Q 048794 928 VS-SELQVIYAE 938 (967)
Q Consensus 928 ~~-~~l~~~~~~ 938 (967)
.. ..|+.+|.+
T Consensus 1315 gmftELaiLyaK 1326 (1630)
T 1xi4_A 1315 GMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHHHHh
Confidence 86 356666643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-25 Score=247.61 Aligned_cols=275 Identities=11% Similarity=-0.090 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----c--CC------CcCHhhHHHHHHHHHccCChHHHHHHHHHHHh
Q 048794 648 LEMYNYLIHGLLE---VHATEMGLDLFTTMKN-----A--GC------APDISTYNLLLDGYGKSGRVEELLKLYEEMSF 711 (967)
Q Consensus 648 ~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~-----~--~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 711 (967)
...+...+..+.. .|++++|+..|+++++ . .+ +.+..++..++..+...|++++|+.+|+++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555554 8999999999999987 3 11 12355778889999999999999999999998
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048794 712 RGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIY 791 (967)
Q Consensus 712 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 791 (967)
..+ +..++..++.++...|++++|...+++++... +.+..++..++.+|...|++++|+..++++.+.. +.+..++
T Consensus 266 ~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 266 LFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp HCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred hCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 753 37788899999999999999999999999874 4456688899999999999999999999999864 3367799
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 048794 792 NILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGL-DAD----TISYNFMI 865 (967)
Q Consensus 792 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~ 865 (967)
..++.++...|++++|+..++++++. .|+ ..++..++.++...|++++|...++++++... .+. ...+..++
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 99999999999999999999999884 454 67899999999999999999999999986321 111 34788999
Q ss_pred HHHHh---cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 866 NGLGR---SGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 866 ~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.++.. .|++++|...++++++. .+.+..++..++.++...|++++|...++++++++|+++..
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 99999 99999999999999975 45567889999999999999999999999999999999986
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-23 Score=236.83 Aligned_cols=454 Identities=10% Similarity=-0.036 Sum_probs=299.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 048794 404 VMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLC 483 (967)
Q Consensus 404 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 483 (967)
.+...+..+.+.|++++|+..|+++.... |+..++..++.++...|++++|+..++++.+.+ +.+..++..++.++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34455555666666666666666665543 455666666666666666666666666665542 334555556666666
Q ss_pred hcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhh--cCCChhHHHhHHHHHHhcCChhHHH
Q 048794 484 KNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKW--LYPDHITLCTLLPGVVKDGQIEDAF 561 (967)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 561 (967)
..|++++|...|+.+...+. ++.......+..+........+...+..+... .+++........ .
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~----------- 151 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE-R----------- 151 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH-H-----------
Confidence 66666666666666655542 22222223332222222222222222111110 000000000000 0
Q ss_pred HHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHh---hccHHHHHHHHHHH
Q 048794 562 RLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCR---QKKALAAKDLFVKF 638 (967)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 638 (967)
....+..+...........+-...... .-..+.+.......+..+.. .|++++|...|++.
T Consensus 152 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 152 ------KDKQENLPSVTSMASFFGIFKPELTFA----------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ------HhhccCCchhHHHHHHHhhcCHHHHHH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 000000111110000000000000000 00001223334455555554 89999999999999
Q ss_pred HH-----hcCC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHH
Q 048794 639 TE-----NLGV-------TSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLY 706 (967)
Q Consensus 639 ~~-----~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 706 (967)
+. .... +....++..++..+...|++++|+..|+++++..+. ..++..++.++...|++++|+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77 2112 234567788899999999999999999999987543 788899999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 048794 707 EEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP 786 (967)
Q Consensus 707 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 786 (967)
+++.... +.+..++..++.++...|++++|+..+++++... +.+...+..++.++...|++++|+..++++.+.. +.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 9999875 4467788999999999999999999999999874 3456688899999999999999999999999863 33
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCC
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-------LKSYSVLVDCLCM---VGRVDDALHYFEELKLNGLDA 856 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~ 856 (967)
+..++..++.++...|++++|+..|+++++. .|+ ..++..++.++.. .|++++|...++++++.. +.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~ 447 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PR 447 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cc
Confidence 6779999999999999999999999999873 232 3388999999999 999999999999999753 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHH
Q 048794 857 DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSL 899 (967)
Q Consensus 857 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l 899 (967)
+..++..++.++...|++++|...++++++. .|+. ..+..+
T Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~ 489 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQAI 489 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHHHH
Confidence 6788899999999999999999999999974 4554 555444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=233.18 Aligned_cols=286 Identities=12% Similarity=0.038 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh---hhH---
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT---ISH--- 721 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~--- 721 (967)
..++..++..+...|++++|+..|+++++.+ +.+..++..++.++...|++++|+..|+++.... +.+. ..+
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l 137 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQL 137 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHH
Confidence 3334444444444444444444444444432 1234444445555555555555555555554432 1111 222
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 722 ---------NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYN 792 (967)
Q Consensus 722 ---------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 792 (967)
...+..+...|++++|+..+++++... +.+..++..++.+|.+.|++++|+..|+++.+.. +.+..+|.
T Consensus 138 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 138 IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 233555778899999999999888763 4566778889999999999999999999998753 34677899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 048794 793 ILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVL------------VDCLCMVGRVDDALHYFEELKLNGLDAD-- 857 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 857 (967)
.++.+|...|++++|+..|+++++ ..|+ ...+..+ +.++...|++++|..+|+++++. .|+
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 291 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIA 291 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcch
Confidence 999999999999999999999987 4565 4444444 88999999999999999999874 343
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccce
Q 048794 858 ---TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQ 933 (967)
Q Consensus 858 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~ 933 (967)
..++..++.++.+.|++++|+..++++++. .+.+..+|..++.++...|++++|+..++++++++|+++.. ..++
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 347888999999999999999999999864 35567999999999999999999999999999999999987 5777
Q ss_pred ------------eeeccCCCc
Q 048794 934 ------------VIYAENPRA 942 (967)
Q Consensus 934 ------------~~~~~~g~~ 942 (967)
.+|...|..
T Consensus 371 ~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 371 KAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHhhcccchhHHHHhCCC
Confidence 778888843
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-23 Score=237.05 Aligned_cols=443 Identities=11% Similarity=0.005 Sum_probs=305.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHH
Q 048794 437 VVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYG 516 (967)
Q Consensus 437 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (967)
...+..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++++|.+.+++++..+ +.+...+..++..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3556666667777777777777777777652 4466667777777777777777777777776654 2356666667777
Q ss_pred HhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcch
Q 048794 517 LVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKS 596 (967)
Q Consensus 517 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (967)
+...|++++|...|+ .....|.....+ +..+...+....|++.++..+...+....
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~-------------------- 158 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGS-------------------- 158 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCccccc--------------------
Confidence 777777777777775 333222222211 22333444455666666655443221111
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH--------hcCChHHH
Q 048794 597 ILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTST-LEMYNYLIHGLL--------EVHATEMG 667 (967)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~--------~~~~~~~A 667 (967)
........+..+....+...+...+.+. ....+. ......+...+. ..+++++|
T Consensus 159 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 159 --------------QVLPSNTSLASFFGIFDSHLEVSSVNTS---SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp --------------CCCCCHHHHHHHHHTSCHHHHHHTSCCC---CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred --------------cccchHhHHHHHHHhcChHHHHHHHhhc---cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0011122334444444444443333221 111111 112333333322 23478999
Q ss_pred HHHHHHHHHcCCCcC------HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048794 668 LDLFTTMKNAGCAPD------ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLF 741 (967)
Q Consensus 668 ~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 741 (967)
+..|+++++..+... ..++..++..+...|++++|+..|+++... .|+..++..++.++...|++++|+..+
T Consensus 222 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999987643211 235777788889999999999999999987 455778888999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 048794 742 YNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP 821 (967)
Q Consensus 742 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 821 (967)
++++... +.+..++..++.++...|++++|+..++++.+.. +.+..+|..++.++...|++++|+..++++++. .|
T Consensus 300 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~ 375 (537)
T 3fp2_A 300 QKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FP 375 (537)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9999874 4556789999999999999999999999999864 335678999999999999999999999999984 45
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHH
Q 048794 822 D-LKSYSVLVDCLCMVGRVDDALHYFEELKLNG-----LDADTISYNFMINGLGRS----------GRIEEALSLFDEMK 885 (967)
Q Consensus 822 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~ 885 (967)
+ ..++..++.++...|++++|...++++++.. .......+..++.++... |++++|...+++++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 5 6788999999999999999999999988531 111223456677888888 99999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 886 KRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 886 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+. .|.+..++..++.++...|++++|+..++++++++|+++..
T Consensus 456 ~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 456 EL-DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred Hh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 75 45567899999999999999999999999999999998886
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=231.92 Aligned_cols=360 Identities=12% Similarity=0.032 Sum_probs=232.4
Q ss_pred CHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhh
Q 048794 506 DVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVG 585 (967)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (967)
+...+..++..+.+.|++++|+..|+++.+..|.+..++..++..+...|++++|+..+++++...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 344555555556666666666666666665555556666666666666666666655555544332
Q ss_pred hhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 048794 586 GILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATE 665 (967)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 665 (967)
+.+..++..++..+...|+++
T Consensus 91 -----------------------------------------------------------p~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 91 -----------------------------------------------------------MDFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp -----------------------------------------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------------------------------------------CCcHHHHHHHHHHHHHcCCHH
Confidence 222333444444444444444
Q ss_pred HHHHHHHHHHHcCCCcC-H---hhH------------HHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048794 666 MGLDLFTTMKNAGCAPD-I---STY------------NLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLV 729 (967)
Q Consensus 666 ~A~~~~~~~~~~~~~~~-~---~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 729 (967)
+|+..|+++.+.. |+ . ..+ ..++..+...|++++|+.+|+++.... +.+..++..++.+|.
T Consensus 112 ~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 112 EAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 4444444444432 21 1 222 223445777788888888888877664 445667777777888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHH
Q 048794 730 KSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNIL------------ING 797 (967)
Q Consensus 730 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~ 797 (967)
..|++++|+..|++++... +.+..++..++.+|...|++++|+..|+++.+.. +.+...+..+ +.+
T Consensus 189 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777652 3455677777888888888888888888887653 2234444444 777
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPD-----LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
+...|++++|+..|+++++ ..|+ ...+..++.++.+.|++++|+..++++++.. +.+..++..++.+|...|
T Consensus 267 ~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 8888888888888888887 3555 3467778888888888888888888887643 446778888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHH------------HHhcC-----CHHHHHHhhcC-CCcCCCCccc------
Q 048794 873 RIEEALSLFDEMKKRGISPDLYTYNSLILN------------LGRAG-----MVEEARKLAGG-NCFVQPSEFV------ 928 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~l~~~p~~~~------ 928 (967)
++++|...++++++. .|.+..++..++.+ +...| +.+++.+.+++ ++...|++..
T Consensus 344 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~ 422 (450)
T 2y4t_A 344 MYDEAIQDYETAQEH-NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKK 422 (450)
T ss_dssp CHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHH
T ss_pred CHHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHH
Confidence 888888888888863 23345666666633 33334 55677777776 7777777643
Q ss_pred -c----ccceeeeccCCCcccccc
Q 048794 929 -S----SELQVIYAENPRATSLSH 947 (967)
Q Consensus 929 -~----~~l~~~~~~~g~~~~~~~ 947 (967)
+ ..++..|...||-+.+..
T Consensus 423 ~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 423 KAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHh
Confidence 1 267777777777766443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=234.03 Aligned_cols=185 Identities=16% Similarity=0.207 Sum_probs=102.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCCCCCHHHH
Q 048794 90 YSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAG---------KIDEAYRILKRMDDEGCGPDVVTY 160 (967)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~~~~~~~~~~~~~ 160 (967)
++.+|.+|++.|++++|.++|++|...|++||..+|+.++.+|++.+ .++.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 33344444444444444444444444444444444444444443332 245555666666655666666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc
Q 048794 161 TVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240 (967)
Q Consensus 161 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (967)
+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666655566666666666666666666666666666666556666666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048794 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLR 274 (967)
Q Consensus 241 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 274 (967)
|++++|.++|++|++.+..|+..||+.++..+..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666665556666666655555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=233.29 Aligned_cols=207 Identities=15% Similarity=0.233 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------h
Q 048794 104 KTVMNLLEEMERLGLRPN-VYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGR---------L 173 (967)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 173 (967)
..+..+.+.+.+.+.... ..++..++..|++.|++++|+++|++|.+.|+.||..+|+.||.+|.+.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 344555566666655443 345788899999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 174 DQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLM 253 (967)
Q Consensus 174 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (967)
++|.++|++|...|+.||..||++++.+|++.|++++|.+++++|...|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 048794 254 RGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKS 310 (967)
Q Consensus 254 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 310 (967)
.+.|+.||..+|+.||.+|++.|++++|.+++++|...+..|+..|+..++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998887653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=239.66 Aligned_cols=437 Identities=14% Similarity=0.078 Sum_probs=326.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHH
Q 048794 471 NTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPG 550 (967)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 550 (967)
....+..+...+...|++++|...|++++..+ +.+...+..++.++...|++++|+..|+++.+..|.+..++..++..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 34667788889999999999999999998876 34788889999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHH
Q 048794 551 VVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALA 630 (967)
Q Consensus 551 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 630 (967)
+...|++++|++.++ .+...+.. ....+..+...+....
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~ 141 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDF----------------------------------------DGASIEPMLERNLNKQ 141 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------------------------------------------CHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCC----------------------------------------ChHHHHHHHHHHHHHH
Confidence 999999999999885 44332111 1112345556666677
Q ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh-hHHHHHHHHH--------ccCChH
Q 048794 631 AKDLFVKFTENLGVT-STLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIS-TYNLLLDGYG--------KSGRVE 700 (967)
Q Consensus 631 a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~g~~~ 700 (967)
|...+.+.+...+.. .........+..+....+.+.+...+...... .+... ....+...+. ..|+++
T Consensus 142 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 142 AMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp HHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 888887775432110 00011122233344455555554443332221 12211 2223332322 235899
Q ss_pred HHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHH
Q 048794 701 ELLKLYEEMSFRGCKPNT-------ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAK 773 (967)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 773 (967)
+|+.+|+++.... +.+. .++..++..+...|++++|...+++++... |+...+..++.++...|++++|+
T Consensus 220 ~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 220 KSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHH
Confidence 9999999999874 2232 246677788889999999999999999874 33778899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 774 KLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
..++++.+.. +.+..++..++.++...|++++|+..|+++++. .|+ ..++..++.++...|++++|...++++++.
T Consensus 297 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 297 KFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999864 346779999999999999999999999999984 555 578999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHhHHHHHHHHHhc----------CCHHHHHHhh
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD------LYTYNSLILNLGRA----------GMVEEARKLA 916 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~----------g~~~~A~~~~ 916 (967)
. +.+..++..++.++...|++++|...++++++.. +.+ ...+..++.++... |++++|+..+
T Consensus 374 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 374 F-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE-EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 3 4567789999999999999999999999988531 111 12355667888888 9999999999
Q ss_pred cCCCcCCCCcccc-ccceeeeccCCCcccccchhhhhhcccccc
Q 048794 917 GGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCEYLASSCTF 959 (967)
Q Consensus 917 ~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 959 (967)
+++++.+|+++.+ ..+|.+|...|++++|...+.+.+..+|..
T Consensus 452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 9999999999988 699999999999999988555656555543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-21 Score=206.25 Aligned_cols=312 Identities=11% Similarity=0.016 Sum_probs=233.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC
Q 048794 618 IIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG 697 (967)
Q Consensus 618 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 697 (967)
++..+...|++++|...|.+++.. .+.+..++..++..+...|++++|+..++++++.. +.+..++..++.++...|
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcC
Confidence 334444444444444444444332 23455667777777777777777777777777653 225566777777777788
Q ss_pred ChHHHHHHHHHHHhCCCC--CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHH
Q 048794 698 RVEELLKLYEEMSFRGCK--PNTISHNIV------------ISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGL 763 (967)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 763 (967)
++++|+..|+++....+. .+...+..+ +..+...|++++|+..+++++... +.+...+..++.++
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECF 164 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 888888888877766310 233333333 577888999999999999988864 45567888899999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHH------------HHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYS------------VLV 830 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~------------~l~ 830 (967)
...|++++|+..++++.+.. +.+..++..++.++...|++++|+..++++++. .|+ ..++. .++
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864 346778999999999999999999999999884 455 33332 337
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDADT----ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA 906 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 906 (967)
.++...|++++|...++++++.. +.+. ..+..++.++...|++++|...++++.+. .|.+..++..++.++...
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHc
Confidence 78899999999999999998753 2233 33556889999999999999999999875 455678999999999999
Q ss_pred CCHHHHHHhhcCCCcCCCCcccc-ccceeeecc
Q 048794 907 GMVEEARKLAGGNCFVQPSEFVS-SELQVIYAE 938 (967)
Q Consensus 907 g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~ 938 (967)
|++++|+..++++++++|+++.. ..|+.++..
T Consensus 320 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999886 466555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-20 Score=197.33 Aligned_cols=211 Identities=9% Similarity=0.023 Sum_probs=166.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC
Q 048794 689 LLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR 768 (967)
Q Consensus 689 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 768 (967)
++..+...|++++|+.+++++.... +.+..++..++.++...|++++|...+++++... +.+...+..++.++...|+
T Consensus 126 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 126 QALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3677888888999999988888764 4466778888888888899999999988888763 4556778888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHhccCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYN------------ILINGFGKTGDVETACELFKQMIKGGIRPD-L----KSYSVLVD 831 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~ 831 (967)
+++|+..++++.+.. +.+...+. .++..+...|++++|+..++++++. .|+ . ..+..++.
T Consensus 204 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 204 HELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICH 280 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHH
Confidence 999999999888753 22333333 3377788999999999999999884 454 2 33566889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 048794 832 CLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA 906 (967)
Q Consensus 832 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 906 (967)
++...|++++|...++++++.. +.+..++..++.++...|++++|...++++++. .|.+..++..+..+....
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-NENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHH
Confidence 9999999999999999999853 447888999999999999999999999999964 333457777777666544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-19 Score=200.19 Aligned_cols=270 Identities=12% Similarity=0.041 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCChh
Q 048794 648 LEMYNYLIHGLLE----VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK----SGRVEELLKLYEEMSFRGCKPNTI 719 (967)
Q Consensus 648 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 719 (967)
+.++..++..|.. .+++++|+..|++..+.+ +..++..++..|.. .+++++|+.+|+++...+ +..
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 220 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DEL 220 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHH
Confidence 3344444444444 556666666666666542 45556666666665 566666666666666543 445
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048794 720 SHNIVISGLVK----SNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIY 791 (967)
Q Consensus 720 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 791 (967)
++..++..|.. .+++++|..+|+++...+ +...+..++.+|.. .+++++|+..|+++.+.+ +...+
T Consensus 221 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~ 294 (490)
T 2xm6_A 221 GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQ 294 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHH
Confidence 55556666654 566666766666666542 23355556666665 666777777777766542 45566
Q ss_pred HHHHHHHhcc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048794 792 NILINGFGKT-----GDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVG---RVDDALHYFEELKLNGLDADTISYNF 863 (967)
Q Consensus 792 ~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 863 (967)
..++.+|... +++++|+..|+++.+.| +..++..++.+|...| ++++|+++|+++.+. .++.++..
T Consensus 295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~ 368 (490)
T 2xm6_A 295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFN 368 (490)
T ss_dssp HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHH
Confidence 6666666655 67777777777766632 3456666666666645 566777777777664 24556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHhhcCCCcCCCC---cccc-cc
Q 048794 864 MINGLGR----SGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR----AGMVEEARKLAGGNCFVQPS---EFVS-SE 931 (967)
Q Consensus 864 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~---~~~~-~~ 931 (967)
|+.+|.. .+++++|..+|+++.+.+ ++..+..|+.++.. .+++++|..+++++++.+|+ ++.+ ..
T Consensus 369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 7777666 667777777777766532 45666667777666 66777777777777777643 5555 46
Q ss_pred ceeeecc
Q 048794 932 LQVIYAE 938 (967)
Q Consensus 932 l~~~~~~ 938 (967)
|+.++..
T Consensus 446 l~~~~~~ 452 (490)
T 2xm6_A 446 EKKLTAK 452 (490)
T ss_dssp HTTSCHH
T ss_pred HHhcCHh
Confidence 6665543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-21 Score=200.35 Aligned_cols=293 Identities=12% Similarity=0.004 Sum_probs=244.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 048794 645 TSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIV 724 (967)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 724 (967)
+.+...+..++..+...|++++|+.+|+++++.. +.+...+..++..+...|++++|+.+++++.... +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4455566777778888888999999988888764 3355667778888889999999999999998874 4466788888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 048794 725 ISGLVKSN-SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD 803 (967)
Q Consensus 725 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 803 (967)
+..+...| ++++|...+++++... +.....+..++.++...|++++|+..++++.+.. +.+..++..++.+|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999874 4456678899999999999999999999999864 3356778889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCH
Q 048794 804 VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNG--------LDADTISYNFMINGLGRSGRI 874 (967)
Q Consensus 804 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 874 (967)
+++|+..++++++. .|+ ..++..++.++...|++++|...++++++.. .+....++..++.++...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999984 454 6889999999999999999999999998521 133457889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeee-ccCCCccc
Q 048794 875 EEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIY-AENPRATS 944 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~-~~~g~~~~ 944 (967)
++|...++++++. .+.+..++..++.++...|++++|..+++++++++|+++.+ ..++..+ ...|+.+.
T Consensus 253 ~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 253 AEALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHHHHhh-CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchhc
Confidence 9999999999975 34566899999999999999999999999999999999988 6899888 66666544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-19 Score=194.75 Aligned_cols=391 Identities=12% Similarity=0.006 Sum_probs=267.9
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCCCCH
Q 048794 436 TVVTYNTLLSGLGK----EGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCK----NEEVDLAMKMLYEMTPRNCWPDV 507 (967)
Q Consensus 436 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 507 (967)
+...+..+...|.. .+++++|...+++..+.| +...+..+...|.. .+++++|...+++..+.+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44455555555554 556666666666555542 34445555555555 556666666666655543 44
Q ss_pred HHHHHHHHHHhh----cCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHh----cCChhHHHHHHHHHHhhcCCCcchhh
Q 048794 508 LTYNTIIYGLVK----EQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVK----DGQIEDAFRLAKCSIYQIGTRAERQF 579 (967)
Q Consensus 508 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 579 (967)
..+..++..|.. .+++++|+..|++..+. .++..+..++..|.. .+++++|++.++
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~-------------- 175 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYS-------------- 175 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH--------------
Confidence 455555555555 55666666666655442 234444444444443 344444444444
Q ss_pred HhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 048794 580 WQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLL 659 (967)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 659 (967)
+.... .++.++..++..|.
T Consensus 176 ---------------------------------------------------------~a~~~----~~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 176 ---------------------------------------------------------KAAEQ----GNVWSCNQLGYMYS 194 (490)
T ss_dssp ---------------------------------------------------------HHHHT----TCHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HHHHC----CCHHHHHHHHHHHh
Confidence 33221 24556666666666
Q ss_pred h----cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-
Q 048794 660 E----VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK----SGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVK- 730 (967)
Q Consensus 660 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 730 (967)
. .+++++|+..|++..+.+ +..++..++..|.. .+++++|+.+|+++...+ +..++..+...|..
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCC
Confidence 6 778888888888888753 56677778888775 788899999999888764 45667777777877
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048794 731 ---SNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS-----GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG 802 (967)
Q Consensus 731 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 802 (967)
.+++++|+.+|+++.+.+ +...+..++..|... +++++|+..|+++.+.+ +...+..++.+|...|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 788999999999988753 345677788888877 89999999999998853 5678888888887756
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 048794 803 ---DVETACELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDALHYFEELKLNGLDADTISYNFMINGLGR----S 871 (967)
Q Consensus 803 ---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 871 (967)
++++|+..|+++.+. .+...++.++.+|.. .+++++|..+|+++.+.+ ++.++..|+.+|.. .
T Consensus 343 ~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCC
Confidence 789999999999884 467788999999988 889999999999998854 56778889999988 8
Q ss_pred CCHHHHHHHHHHHHHcCCC-C-CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 872 GRIEEALSLFDEMKKRGIS-P-DLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 872 g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+++++|...|+++.+.+.. | +......++..+. .+.+.|++...+.++..|++...
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~~~~~~ 474 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEKYAPEAWA 474 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875432 2 3355555555433 34566666666666666776665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.4e-19 Score=195.62 Aligned_cols=380 Identities=12% Similarity=-0.060 Sum_probs=239.5
Q ss_pred CCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhh---------cCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCc
Q 048794 505 PDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKW---------LYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRA 575 (967)
Q Consensus 505 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 575 (967)
.....++.++..+...|++++|++.|++..+. .+....++..++..|...|++++|...+++++.......
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566778888888888888888888887643 233456678888999999999999999888765421111
Q ss_pred chhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHH--HhhccHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 048794 576 ERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLF--CRQKKALAAKDLFVKFTENLGVTSTLEMYNY 653 (967)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 653 (967)
. ...+....+...++..+ ...+++++|...|++.+... |.++..+..
T Consensus 129 ~-----------------------------~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~ 177 (472)
T 4g1t_A 129 S-----------------------------PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSG 177 (472)
T ss_dssp C-----------------------------SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred c-----------------------------ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 0 00111122333344444 34568899999999987754 445566655
Q ss_pred HHHH---HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH----ccCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048794 654 LIHG---LLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYG----KSGRVEELLKLYEEMSFRGCKPNTISHNIVIS 726 (967)
Q Consensus 654 l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 726 (967)
++.. +...++.++|++.+++.++.+ +.+..++..++..+. ..|++++|..+++++.... +.+..++..++.
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~ 255 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence 5544 345677788999998888764 235555655655544 3467889999999988774 456677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC-------------------CCHHHHHHHHHHHHHCCCCCC
Q 048794 727 GLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS-------------------GRLEEAKKLFEEMLDYGCKPN 787 (967)
Q Consensus 727 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~ 787 (967)
.|...|++++|+..++++++.. +.+..++..++.+|... +.++.|+..++++.+.. +.+
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 333 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNL 333 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTT
T ss_pred HHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cch
Confidence 9999999999999999988863 44556677777666432 23567777888877753 224
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRPDL----KSYSVLVDC-LCMVGRVDDALHYFEELKLNGLDADTISYN 862 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 862 (967)
..++..++.+|...|++++|+..|+++++. .|+. ..+..++.. +...|++++|+..|+++++. .|+.....
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~ 409 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE 409 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH
Confidence 457788888888888999999999888874 3442 234445543 34678888899988888874 44432221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccce
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQ 933 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~ 933 (967)
+....+..++++.++. .|.++.+|..++.++...|++++|++.+++++++.|.+|.+ ..+|
T Consensus 410 ---------~~~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 410 ---------KMKDKLQKIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp ---------HHHHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred ---------HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 1223445566666653 45566888899999999999999999999999999988886 4554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-18 Score=184.13 Aligned_cols=296 Identities=13% Similarity=0.025 Sum_probs=249.0
Q ss_pred CCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhH
Q 048794 607 GICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTY 686 (967)
Q Consensus 607 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 686 (967)
+.+.+..+...++..+...|++++|...|++++... +.+...+..++..+...|++++|+..++++++.. +.+..++
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 93 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSW 93 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHH
Confidence 346677888899999999999999999999998764 3445566677788899999999999999999875 3367788
Q ss_pred HHHHHHHHccC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 048794 687 NLLLDGYGKSG-RVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK 765 (967)
Q Consensus 687 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 765 (967)
..++..+...| ++++|+..|+++.... +.+..++..++.++...|++++|+..+++++... +.....+..++..|..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 89999999999 9999999999999875 4467789999999999999999999999999874 3345677789999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcC
Q 048794 766 SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGG--------IRPDLKSYSVLVDCLCMVG 837 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g 837 (967)
.|++++|+..++++.+.. +.+..++..++.++...|++++|+..++++++.. .+....++..++.++...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999999864 3467799999999999999999999999998731 0223578999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-HhcCCHH
Q 048794 838 RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL-GRAGMVE 910 (967)
Q Consensus 838 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 910 (967)
++++|...++++++.. +.+..++..++.++...|++++|...++++++. .|.+...+..++.++ ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CSCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999754 446788999999999999999999999999864 344568888999988 4556643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-18 Score=190.59 Aligned_cols=298 Identities=9% Similarity=0.058 Sum_probs=216.2
Q ss_pred hhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHH------HHHcC---CCc
Q 048794 624 RQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGL-------------LEVHATEMGLDLFTT------MKNAG---CAP 681 (967)
Q Consensus 624 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~A~~~~~~------~~~~~---~~~ 681 (967)
..|+.+.|..+|++.+.. +.......+....... ...++++.|..++.. ..+.. ++|
T Consensus 142 ~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 142 ENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp HHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 468888999999888762 2111123333222211 134567777777665 22221 233
Q ss_pred C--------HhhHHHHHHHHHcc----CCh----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCCHH---
Q 048794 682 D--------ISTYNLLLDGYGKS----GRV----EELLKLYEEMSFRGCKPNTISHNIVISGLVK-------SNSID--- 735 (967)
Q Consensus 682 ~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~--- 735 (967)
+ ...|...+...... ++. +.++.+|++++... +.+...|..++..+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 23444444332221 232 47888999998873 4567788888888775 68876
Q ss_pred ----HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCCHHHHHH
Q 048794 736 ----KAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN-C-VIYNILINGFGKTGDVETACE 809 (967)
Q Consensus 736 ----~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~ 809 (967)
+|..+++++++.-.+.....+..++..+.+.|++++|..+|+++++. .|+ . .+|..++..+.+.|++++|.+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999999997423556778889999999999999999999999985 443 3 589999999999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 810 LFKQMIKGGIRPD-LKSYSVLVDC-LCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 810 ~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
+|+++++. .|. ...+...+.+ +...|++++|..+|+++++.. +.++..+..++..+.+.|+.++|..+|++++..
T Consensus 378 ~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 378 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 99999984 443 3444444443 335899999999999999753 446788999999999999999999999999974
Q ss_pred C-CCCC--HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 888 G-ISPD--LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 888 ~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
. .+|+ ..+|..++......|+.+.+.++.+++++..|+++.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~ 498 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 498 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhcc
Confidence 2 2232 248888888888999999999999999999997654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-19 Score=192.00 Aligned_cols=293 Identities=11% Similarity=-0.022 Sum_probs=166.7
Q ss_pred HHhhccHHHHHH-HHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 048794 622 FCRQKKALAAKD-LFVKFTENLGVTS--TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGR 698 (967)
Q Consensus 622 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 698 (967)
+...+++++|.. .|.+.+......+ +...+..++..+...|++++|+..|+++++.. +.+..++..++.++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344466666666 6655433222111 23445666666777777777777777777654 2355566667777777777
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHH---------------HHHHHH
Q 048794 699 VEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYG---------------PLIDGL 763 (967)
Q Consensus 699 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---------------~l~~~~ 763 (967)
+++|+..|+++.... +.+..++..++.++...|++++|+..+++++...+........ .+...+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 777777777776654 3355666667777777777777777777776653222211111 123333
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDD 841 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 841 (967)
..|++++|+..++++.+..+.. +..++..++.++...|++++|+..|+++++. .|+ ..++..++.++...|++++
T Consensus 193 -~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred -hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666666542111 3456666666666666666666666666653 343 4566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHhHHHHHHHHHhcCCHH
Q 048794 842 ALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-----------LYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 842 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~ 910 (967)
|+..++++++.. +.+..++..++.+|...|++++|...++++++. .+.+ ..+|..++.++...|+++
T Consensus 270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM-QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 666666666532 334556666666666666666666666666532 1111 456666666666666666
Q ss_pred HHHHhhcCCCc
Q 048794 911 EARKLAGGNCF 921 (967)
Q Consensus 911 ~A~~~~~~~l~ 921 (967)
+|...+++.++
T Consensus 348 ~A~~~~~~~l~ 358 (368)
T 1fch_A 348 AYGAADARDLS 358 (368)
T ss_dssp GHHHHHTTCHH
T ss_pred hHHHhHHHHHH
Confidence 66666665554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=199.34 Aligned_cols=287 Identities=12% Similarity=0.011 Sum_probs=233.5
Q ss_pred HHhcCChHHHHH-HHHHHHHcCCC-c--CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 048794 658 LLEVHATEMGLD-LFTTMKNAGCA-P--DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNS 733 (967)
Q Consensus 658 ~~~~~~~~~A~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 733 (967)
+...|++++|+. .|++....... | +...+..++..+...|++++|+.+|+++.... +.+..++..++.++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 345578899988 88866654321 1 35668899999999999999999999999885 5577789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH----------------HHHHH
Q 048794 734 IDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYN----------------ILING 797 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~l~~~ 797 (967)
+++|+..+++++... +.+..++..++.+|...|++++|+..++++.+..+. +...+. .++..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999999874 456778999999999999999999999999986422 222222 34555
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPD---LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRI 874 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 874 (967)
+ ..|++++|+..|+++++. .|+ ..++..++.++...|++++|...++++++.. +.+..++..++.++...|++
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred h-hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCH
Confidence 5 889999999999999984 454 7889999999999999999999999999753 44678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc-----------ccc-ccceeeeccCCCc
Q 048794 875 EEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE-----------FVS-SELQVIYAENPRA 942 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----------~~~-~~l~~~~~~~g~~ 942 (967)
++|...++++++. .+.+..++..++.++.+.|++++|+.+++++++++|++ +.. ..++.+|...|++
T Consensus 268 ~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 268 EEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 9999999999975 45567899999999999999999999999999999988 444 6899999999999
Q ss_pred ccccchhhhh
Q 048794 943 TSLSHKHCEY 952 (967)
Q Consensus 943 ~~~~~~~~~~ 952 (967)
+++..-+.+.
T Consensus 347 ~~A~~~~~~~ 356 (368)
T 1fch_A 347 DAYGAADARD 356 (368)
T ss_dssp GGHHHHHTTC
T ss_pred HhHHHhHHHH
Confidence 9987744433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-18 Score=180.33 Aligned_cols=270 Identities=10% Similarity=-0.000 Sum_probs=196.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048794 651 YNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVK 730 (967)
Q Consensus 651 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 730 (967)
+..++..+...|++++|+..|+++++.. +.+..++..++..+...|++++|+..|+++.... +.+..++..++.++..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3344444555555555555555555443 2244455555555666666666666666655543 3344455555556666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhcHHHH--------------HH-HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 731 SNSIDKAMDLFYNLVSGGFSPTPCTYGPL--------------ID-GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILI 795 (967)
Q Consensus 731 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 795 (967)
.|++++|...+++++...+ .....+..+ +. .+...|++++|+..++++.+.. +.+..++..++
T Consensus 102 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 6666666666666555421 122222222 33 4778899999999999999864 33678999999
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048794 796 NGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRI 874 (967)
Q Consensus 796 ~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 874 (967)
.++...|++++|+..++++++. .|+ ..++..++.++...|++++|...++++++.. +.+..++..++.++...|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 9999999999999999999984 454 7889999999999999999999999999753 45678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-------------HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 875 EEALSLFDEMKKRGISPD-------------LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++|.+.++++.+. .|+ ..++..++.++...|++++|...++++++..|++...
T Consensus 257 ~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 322 (327)
T 3cv0_A 257 DLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGL 322 (327)
T ss_dssp HHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTS
T ss_pred HHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhH
Confidence 9999999999864 333 5788999999999999999999999999998887664
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=185.05 Aligned_cols=268 Identities=13% Similarity=0.008 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISG 727 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 727 (967)
...+..++..+.+.|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+++.... +.+..++..++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446677777778888888888888777764 3356777788888888888888888888887764 4456677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC---------ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGFSP---------TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK-PNCVIYNILING 797 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~ 797 (967)
|...|++++|+..+++++...+.. ....+..++.++...|++++|+..|+++++..+. ++..++..++.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 888888888888888877652111 1122344588899999999999999999986422 157799999999
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEE 876 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 876 (967)
|...|++++|+..|+++++. .|+ ..++..++.+|...|++++|+..|+++++.. +.+..++..++.+|...|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999884 454 7889999999999999999999999999753 4467889999999999999999
Q ss_pred HHHHHHHHHHcCCCC-------------CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 877 ALSLFDEMKKRGISP-------------DLYTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 877 A~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
|...++++++. .| +..+|..++.++...|+.+.|.+..++.+..
T Consensus 300 A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 300 AVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356 (365)
T ss_dssp HHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence 99999999853 22 2578899999999999999999988876543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=181.75 Aligned_cols=271 Identities=13% Similarity=0.033 Sum_probs=170.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 048794 658 LLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKA 737 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 737 (967)
....|++..|+..++......+.+.......++.+|...|++++|+..++. . .+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 345566666666665544332111123445566677777777777765543 1 244455666666667777777777
Q ss_pred HHHHHHHHhCCC-CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 738 MDLFYNLVSGGF-SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 738 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
++.+++++..+. +.+...+..++.++...|++++|++.+++ +.+..++..++.++.+.|++++|++.|+++++
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777777766542 33455566667777777777777777766 24566777777777777777777777777776
Q ss_pred CCCCCCHH-HHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 817 GGIRPDLK-SYS--VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 817 ~~~~p~~~-~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
. .|+.. ... .+...+...|++++|..+|+++++.. +.+...++.++.++.+.|++++|...++++++. .|.++
T Consensus 159 ~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p~~~ 234 (291)
T 3mkr_A 159 Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DSGHP 234 (291)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCH
T ss_pred h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH
Confidence 3 45522 111 12233334577777777777777652 456667777777777777777777777777754 34455
Q ss_pred HhHHHHHHHHHhcCCHHH-HHHhhcCCCcCCCCccccccceeeeccCCCcccc
Q 048794 894 YTYNSLILNLGRAGMVEE-ARKLAGGNCFVQPSEFVSSELQVIYAENPRATSL 945 (967)
Q Consensus 894 ~~~~~l~~~~~~~g~~~~-A~~~~~~~l~~~p~~~~~~~l~~~~~~~g~~~~~ 945 (967)
.++..++.++...|+.++ +.++++++++++|+++.. ..++.+.+.|+++
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~---~d~~~~~~~fd~~ 284 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI---KEYRAKENDFDRL 284 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHHHH
Confidence 777777777777777755 467777777777777773 3334444444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-17 Score=183.91 Aligned_cols=385 Identities=10% Similarity=-0.060 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccC-------C
Q 048794 438 VTYNTLLSGLGKEGQVQKAIELFEGMTDH--------GCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPR-------N 502 (967)
Q Consensus 438 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 502 (967)
..|+.+...+...|++++|++.+++..+. ..+....+|..+..+|...|++++|...++++... .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 34444444444555555555554443321 01112344555555555555555555555544321 0
Q ss_pred CCCCHHHHHHHHHHHhh--cCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHH---hcCChhHHHHHHHHHHhhcCCCcch
Q 048794 503 CWPDVLTYNTIIYGLVK--EQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVV---KDGQIEDAFRLAKCSIYQIGTRAER 577 (967)
Q Consensus 503 ~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~ 577 (967)
......++...+.++.. .+++++|+..|+++.+..|.++..+..++..+. ..++.++|++.+++++...+..+..
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 01123344444444333 346777777777777777777666666655533 3455566666666665543222111
Q ss_pred hhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 048794 578 QFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHG 657 (967)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 657 (967)
..... ..+...+...++.++|...+++.... .+....++..++..
T Consensus 212 ~~~l~---------------------------------~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 212 KVLLA---------------------------------LKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHH---------------------------------HHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHH---------------------------------HHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHH
Confidence 00000 00011112233444444444444332 23444555555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 048794 658 LLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKA 737 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 737 (967)
+...|++++|+..++++++.. +.+..++..++.+|...+....+ .. ...........+..+.|
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHA 319 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHH
Confidence 556666666666665555542 12334444444444321110000 00 00000011122346778
Q ss_pred HHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH-HhccCCHHHHHHHHHHH
Q 048794 738 MDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV--IYNILING-FGKTGDVETACELFKQM 814 (967)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~~~~~~A~~~~~~~ 814 (967)
...++++...+ +....++..++.+|...|++++|+..|+++++..+.+... .+..++.. +...|++++|+..|+++
T Consensus 320 ~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 320 VAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888764 4455688899999999999999999999999864332221 34445543 45788999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 815 IKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 815 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
++ +.|+..... +....+..++++.++.+ +.++.++..++.+|...|++++|++.|+++++.
T Consensus 399 l~--i~~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 399 VK--INQKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HH--SCCCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred Hh--cCcccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 98 567643222 22334456667777653 457788999999999999999999999999864
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-16 Score=173.52 Aligned_cols=218 Identities=11% Similarity=0.074 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc-------cCChH-------HHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048794 665 EMGLDLFTTMKNAGCAPDISTYNLLLDGYGK-------SGRVE-------ELLKLYEEMSFRGCKPNTISHNIVISGLVK 730 (967)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 730 (967)
.++...|++.+... +.+...|..++..+.+ .|+++ +|..+|++++..-.+.+...|..++..+..
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 37788999988864 3467788888888775 79987 999999999973224567789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHH
Q 048794 731 SNSIDKAMDLFYNLVSGGFSPT-PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILING-FGKTGDVETAC 808 (967)
Q Consensus 731 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~ 808 (967)
.|++++|..+|+++++.. +.+ ..+|...+..+.+.|++++|+++|+++.+.. +.+...+...+.. +...|++++|.
T Consensus 334 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence 999999999999999963 223 2578888999999999999999999999863 2234445444443 34689999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 809 ELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNG-LDA--DTISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 809 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
.+|+++++. .|+ ...|..++..+.+.|+.++|..+|++++..+ .+| ....|...+......|+.+.+..+.+++
T Consensus 412 ~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 412 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999984 565 7889999999999999999999999999853 223 2447778888888999999999999999
Q ss_pred HHc
Q 048794 885 KKR 887 (967)
Q Consensus 885 ~~~ 887 (967)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=193.46 Aligned_cols=261 Identities=11% Similarity=0.011 Sum_probs=218.7
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
+...+..++..+.+.|++++|+.+|++++... +.+..++..++.++...|++++|+..|++++... +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568899999999999999999999999875 5577899999999999999999999999999874 455778999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNC-----------VIYNILINGFGKTGDVETACELFKQMIKGGIRP---DLKSYS 827 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~ 827 (967)
+|...|++++|+..|+++++.. |+. ..+..++.++...|++++|+..|+++++. .| +..++.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 217 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQT 217 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHH
Confidence 9999999999999999998752 321 23345688899999999999999999984 45 478999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG 907 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 907 (967)
.++.++...|++++|+..++++++.. +.+..++..++.+|...|++++|+..++++++. .|.+..++..++.++...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCC
Confidence 99999999999999999999999853 457889999999999999999999999999975 4555799999999999999
Q ss_pred CHHHHHHhhcCCCcCCCCccc-------------cccceeeeccCCCcccccchhh
Q 048794 908 MVEEARKLAGGNCFVQPSEFV-------------SSELQVIYAENPRATSLSHKHC 950 (967)
Q Consensus 908 ~~~~A~~~~~~~l~~~p~~~~-------------~~~l~~~~~~~g~~~~~~~~~~ 950 (967)
++++|+..++++++++|++.. +..|+.++...|+.+.+.....
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999988422 2589999999999988666333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=183.98 Aligned_cols=266 Identities=9% Similarity=-0.029 Sum_probs=224.5
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
+...+..++..+...|++++|+.+|+++.... +.+..++..++.++...|++++|...+++++... +.+..++..++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44567788999999999999999999999875 4477788899999999999999999999999874 456678889999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHhccCCHHHHHHHHHHHHhCCCCC-CHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNIL--------------IN-GFGKTGDVETACELFKQMIKGGIRP-DLKS 825 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~ 825 (967)
+|...|++++|+..++++.+..+. +...+..+ +. ++...|++++|+..++++++. .| +..+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 174 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQL 174 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHH
Confidence 999999999999999999986322 33333333 33 477889999999999999984 45 4788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
+..++.++...|++++|...++++++.. +.+..++..++.++...|++++|...++++++. .+.+..++..++.++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI-NPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999753 456788999999999999999999999999875 45567899999999999
Q ss_pred cCCHHHHHHhhcCCCcCCCC------------cccc-ccceeeeccCCCcccccchhhhhhc
Q 048794 906 AGMVEEARKLAGGNCFVQPS------------EFVS-SELQVIYAENPRATSLSHKHCEYLA 954 (967)
Q Consensus 906 ~g~~~~A~~~~~~~l~~~p~------------~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~ 954 (967)
.|++++|++.+++++.++|+ ++.. ..++.+|...|++++|.....+.+.
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999 5666 6999999999999998774444333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-18 Score=165.26 Aligned_cols=190 Identities=17% Similarity=0.047 Sum_probs=107.9
Q ss_pred ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 048794 752 TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLV 830 (967)
Q Consensus 752 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 830 (967)
+...+..++..+.+.|++++|+..|+++++.. +.+...+..++.++...|++++|+..|+++++ ..|+ ..++..++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 34455555566666666666666666665542 22445566666666666666666666666655 2443 45555666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 048794 831 DCLCMV-----------GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSL 899 (967)
Q Consensus 831 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 899 (967)
.++... |++++|+..++++++.+ +.+..++..++.++...|++++|+..++++++.. .+..++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 66666666666666532 2245556666666666666666666666666543 455666666
Q ss_pred HHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccc
Q 048794 900 ILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSH 947 (967)
Q Consensus 900 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~ 947 (967)
+.++...|++++|+..++++++++|+++.. ..++.+|...|++++|..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 666666666666666666666666666665 466666666666666555
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-17 Score=167.18 Aligned_cols=252 Identities=11% Similarity=0.010 Sum_probs=195.2
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhcHHHHHH
Q 048794 684 STYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPT--PCTYGPLID 761 (967)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 761 (967)
..+...+..+...|++++|+..|+++.... +.+..++..++.++...|++++|+..+++++.....+. ...+..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 455667778888899999999998888874 34555788888888899999999999998888421111 223788899
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 840 (967)
+|...|++++|+..|+++.+.. +.+..+|..++.+|...|++++|+..|+++++. .|+ ..++..++..+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998864 336678999999999999999999999999884 555 678888884444556999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHhHHHHHHHHHhcCCHH
Q 048794 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGR---IEEALSLFDEMKKRG-ISPD------LYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 841 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~ 910 (967)
+|...++++++.. +.+...+..++.++...|+ +++|...++++.+.. -.|+ ..++..++..+...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999753 4457788889999988888 888999999887431 1123 157788999999999999
Q ss_pred HHHHhhcCCCcCCCCcccc-ccceeeeccCC
Q 048794 911 EARKLAGGNCFVQPSEFVS-SELQVIYAENP 940 (967)
Q Consensus 911 ~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g 940 (967)
+|+.+++++++++|+|+.+ -.++.+....+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999999998 46666655443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-16 Score=160.15 Aligned_cols=277 Identities=13% Similarity=0.083 Sum_probs=218.2
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc
Q 048794 619 IKLFCRQKKALAAKDLFVKFTENLGVTST--LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKS 696 (967)
Q Consensus 619 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 696 (967)
++..+..|++..|...+++... ..++ ......++..|...|++++|+..++.. .+|+..++..++..+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCC
Confidence 4566788999999999877622 1222 345567789999999999999876542 256777888899999999
Q ss_pred CChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHH
Q 048794 697 GRVEELLKLYEEMSFRGC-KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKL 775 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 775 (967)
++.++|++.++++...+. +.+...+..++.++...|++++|+..+++ +.+...+..++.+|.+.|++++|++.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999987653 33566778888999999999999999987 45667888999999999999999999
Q ss_pred HHHHHHCCCCCCHH-HH--HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 776 FEEMLDYGCKPNCV-IY--NILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 776 ~~~~~~~~~~~~~~-~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
|+++.+.. |+.. .. ..+...+...|++++|+.+|+++++. .+++...++.++.++.+.|++++|...++++++.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999863 4433 21 12234455668999999999999985 3445789999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhc
Q 048794 853 GLDADTISYNFMINGLGRSGRIEE-ALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAG 917 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 917 (967)
+ +.++.++..++.++...|+.++ +.++++++++ +.|+... +.....+.+.+++|..-|.
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~~~~~~~fd~~~~~~~ 289 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEYRAKENDFDRLVLQYA 289 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHHHHHHHHHHHHHHHHS
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHHHHHHHHHHHHHHHcC
Confidence 4 4578899999999999999876 5789999986 4455433 2234666677787776653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-17 Score=165.42 Aligned_cols=231 Identities=10% Similarity=0.049 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C----hhcHH
Q 048794 684 STYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSP--T----PCTYG 757 (967)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~ 757 (967)
..+..++..+...|++++|+.+|+++.... .+..++..++.++...|++++|+..+++++...+.. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666654 455566666666666677777776666666542111 1 35677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMV 836 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 836 (967)
.++.+|...|++++|+..|+++.+. .|+. ..+...|++++|+..+++++. ..|+ ...+..++.++...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHh
Confidence 7788888888888888888888775 3442 345556778888888888887 3555 46777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhh
Q 048794 837 GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLA 916 (967)
Q Consensus 837 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 916 (967)
|++++|...++++++.. +.+..++..++.++...|++++|...++++++. .+.+...+..++.++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888888753 446777888888888888888888888888864 3445678888888888888888888888
Q ss_pred cCCCcCC------CCcccc
Q 048794 917 GGNCFVQ------PSEFVS 929 (967)
Q Consensus 917 ~~~l~~~------p~~~~~ 929 (967)
+++++++ |++...
T Consensus 231 ~~a~~~~~~~~~~p~~~~~ 249 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREI 249 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHhChhhcCCCchHHH
Confidence 8888888 777665
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-17 Score=178.03 Aligned_cols=272 Identities=15% Similarity=0.039 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC---ChHHHHHHHHHHHhCCCCCChhhHHHH
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG---RVEELLKLYEEMSFRGCKPNTISHNIV 724 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l 724 (967)
+.+...++..|...+.++++......+.+.-...+..++..++.+|...| ++++|+.+|+++...+ +++...+..+
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 45666777777777755554444333322211223347888898998899 8999999999999886 5566655777
Q ss_pred HHHHHhc----CCHHHHHHHHHHHHhCCCCCChhcHHHHHHH-H--HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 725 ISGLVKS----NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDG-L--SKSGRLEEAKKLFEEMLDYGCKPNCVIYNILING 797 (967)
Q Consensus 725 ~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 797 (967)
+..|... +++++|+.+|+++. +.++..+..++.+ | ...+++++|+..|+++.+.| +...+..++.+
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 292 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKL 292 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 8777655 78999999999988 3445577777777 4 56889999999999999864 77788889988
Q ss_pred HhccC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 798 FGKTG-----DVETACELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 798 ~~~~~-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
|. .| ++++|+..|++.. ..+..+.+.|+.+|.. ..++++|..+|+++.+.| ++.....|+.+|
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 364 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLF 364 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHH
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHH
Confidence 87 45 9999999999877 2356788889988876 348999999999998865 334566788887
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--hcCCHHHHHHhhcCCCcCCCCcccc-ccceeeecc
Q 048794 869 GR----SGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG--RAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAE 938 (967)
Q Consensus 869 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~ 938 (967)
.. ..++++|..+|+.+.+.|. ......+..... ..++..+|...+++..+..|..... ..|..+-.+
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g~---~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 438 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQDT---PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTLQLHALQEE 438 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTCC---HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC----CCCBC----
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhc
Confidence 64 4589999999999986542 333333333332 2357788888888776655553222 345555433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=154.69 Aligned_cols=200 Identities=17% Similarity=0.081 Sum_probs=146.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 715 KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNIL 794 (967)
Q Consensus 715 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 794 (967)
+++...+..++..+...|++++|+..|+++++.. +.+...+..++.++.+.|++++|+..|+++++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4455667777777777777777777777777763 4455677778888888888888888888888763 2356678888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 795 INGFGKT-----------GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYN 862 (967)
Q Consensus 795 ~~~~~~~-----------~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 862 (967)
+.++... |++++|+..|+++++ ..|+ ..++..++.++...|++++|+..|+++++.+ .++..+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 8888888 999999999999888 4665 6788889999999999999999999998865 6778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
.++.+|...|++++|+..|+++++. .|.+..++..++.++...|++++|+..++++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 8999999999999999999998874 344568888999999999999999999887753
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=165.98 Aligned_cols=247 Identities=10% Similarity=0.012 Sum_probs=192.2
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 683 ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNS-IDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
..++..++.++...|++++|+..|++++... +.+..+|..++.++...|+ +++|+..|++++..+ +.+..+|..++.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3456677777788888888888888888764 4456677888888888886 888888888888764 445667888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh-cCCH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCM-VGRV 839 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~ 839 (967)
++...|++++|+..|+++++.. +.+..+|..++.++...|++++|+..|+++++ ..|+ ..+|+.++.++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 8888899999999999998864 33677899999999999999999999999988 4565 6888899998888 5665
Q ss_pred HHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-----
Q 048794 840 DDA-----LHYFEELKLNGLDADTISYNFMINGLGRSG--RIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG----- 907 (967)
Q Consensus 840 ~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 907 (967)
++| +..+++++..+ +.+..+|..++.++...| ++++|++.++++ +. .+.+..++..++.++.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 58888888753 346778888898888888 688999888887 32 3444578888888888874
Q ss_pred ---C-HHHHHHhhcCC-CcCCCCcccc-ccceeeec
Q 048794 908 ---M-VEEARKLAGGN-CFVQPSEFVS-SELQVIYA 937 (967)
Q Consensus 908 ---~-~~~A~~~~~~~-l~~~p~~~~~-~~l~~~~~ 937 (967)
+ +++|+++++++ ++++|..... ..++..+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3 58999999998 8999988875 45555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-15 Score=151.22 Aligned_cols=230 Identities=13% Similarity=-0.024 Sum_probs=161.8
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhcHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVK----SNSIDKAMDLFYNLVSGGFSPTPCTYG 757 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 757 (967)
+..++..++..+...|++++|+.+|+++... .+..++..++..|.. .+++++|+..|+++...+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4445566666666666777777777666652 244556666666666 677777777777766653 445666
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048794 758 PLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK----TGDVETACELFKQMIKGGIRPDLKSYSVL 829 (967)
Q Consensus 758 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 829 (967)
.++.+|.. .+++++|+..|+++.+.+ +..++..++.+|.. .+++++|+..|+++.+.+ +..++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 67777777 777777777777777742 66677777777777 778888888888877743 45667777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048794 830 VDCLCM----VGRVDDALHYFEELKLNGLDADTISYNFMINGLGR----SGRIEEALSLFDEMKKRGISPDLYTYNSLIL 901 (967)
Q Consensus 830 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 901 (967)
+.+|.. .+++++|+.+|+++.+.+ ++..+..++.+|.. .+++++|+..++++.+.+ +...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 778888888888777643 45666777777777 778888888888777642 2566777777
Q ss_pred HHHh----cCCHHHHHHhhcCCCcCCCCcccc
Q 048794 902 NLGR----AGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 902 ~~~~----~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++.. .|++++|++++++++++.|++...
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777 778888888888888887776654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=153.36 Aligned_cols=225 Identities=14% Similarity=0.094 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--C----hhhH
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKP--N----TISH 721 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 721 (967)
...+..++..+...|++++|+..|+++++.. .+..++..++.++...|++++|+..++++....+.. + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456677788888889999999998888876 677788888889999999999999999888753221 1 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT 801 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 801 (967)
..++.++...|++++|+..+++++... ++ ...+...|++++|+..++++.... +.+...+..++.++...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 888888999999999999999988853 32 345677788999999999998853 22455888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
|++++|+..|+++++. .| +..++..++.++...|++++|...++++++.+ +.+..++..++.++...|++++|...
T Consensus 153 ~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999884 45 47889999999999999999999999999754 44678899999999999999999999
Q ss_pred HHHHHHc
Q 048794 881 FDEMKKR 887 (967)
Q Consensus 881 ~~~~~~~ 887 (967)
++++++.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999853
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.5e-15 Score=150.66 Aligned_cols=283 Identities=17% Similarity=0.143 Sum_probs=131.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 048794 29 LKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMN 108 (967)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (967)
+.|++++|.+.++++. .+.+|..++.++.+.|++++|++.|.+. +|...|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677999999999983 3469999999999999999999999653 566789999999999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 048794 109 LLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSH 188 (967)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 188 (967)
.++...+. .+++.+...++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777664 3457778889999999999999988874 367779999999999999999999999987
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048794 189 QPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTL 268 (967)
Q Consensus 189 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 268 (967)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|...... +...+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 36889999999999999999999987 2789999999999999999999655443 22344556678
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCC------CcccHHHHHHH
Q 048794 269 ICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIR-GIVP------NVVSCNASLYS 341 (967)
Q Consensus 269 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~ 341 (967)
+..|.+.|.+++|..+++...... +.....|..+..+|++- .+++..+.++..... +++| +...|..+...
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988665 55666777776666654 444444444433222 1222 46778888888
Q ss_pred HHhcCCHHHHHHH
Q 048794 342 LAETGRIGEAKTI 354 (967)
Q Consensus 342 ~~~~g~~~~a~~~ 354 (967)
|...++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 8888888877663
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-15 Score=162.51 Aligned_cols=345 Identities=13% Similarity=0.022 Sum_probs=233.1
Q ss_pred HHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCCh---hHHHHHHHHHHhhcCCCcchhhHhhhhhhhcc
Q 048794 513 IIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQI---EDAFRLAKCSIYQIGTRAERQFWQDLVGGILT 589 (967)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (967)
+...+.+.|++++|..+|+++.+. .+...+..++..|...|.. ++|++.+++++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------------------- 67 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------------------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------------------
Confidence 445566667777777777776543 3455566666666666666 6777776665532
Q ss_pred cCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhh-----ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 048794 590 VAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQ-----KKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHAT 664 (967)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 664 (967)
++.....++..+... ++.++|...|++.... .++.++..++..|...+..
T Consensus 68 ---------------------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~~~~~~ 122 (452)
T 3e4b_A 68 ---------------------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN----GEGNTLIPLAMLYLQYPHS 122 (452)
T ss_dssp ------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT----TCSSCHHHHHHHHHHCGGG
T ss_pred ---------------------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhCCCC
Confidence 112233444433333 3777788888777652 2233667777777765554
Q ss_pred H---HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHH----HHHHHHhCCCCCChhhHHHHHHHHHhcC---CH
Q 048794 665 E---MGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLK----LYEEMSFRGCKPNTISHNIVISGLVKSN---SI 734 (967)
Q Consensus 665 ~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 734 (967)
+ ++...+......| +..+...++..|...+.++++.+ +++.+.. .+..++..++..|...| +.
T Consensus 123 ~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 123 FPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp CTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccH
Confidence 3 3455555555543 45677788888988885554444 4444443 34448889999999999 99
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHH
Q 048794 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS----GRLEEAKKLFEEMLDYGCKPNCVIYNILING-F--GKTGDVETA 807 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A 807 (967)
++|+..|+++...+ ++....+..++.+|... +++++|+..|+++. . -+...+..++.+ + ...+++++|
T Consensus 196 ~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 196 AELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 99999999999986 44444456788888665 79999999999998 3 366788888887 5 568899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048794 808 CELFKQMIKGGIRPDLKSYSVLVDCLCMVG-----RVDDALHYFEELKLNGLDADTISYNFMINGLGR----SGRIEEAL 878 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 878 (967)
+..|++..+.| +..+++.|+.+|. .| ++++|..+|+++. . .++.+...|+.+|.. ..++++|.
T Consensus 271 ~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~ 342 (452)
T 3e4b_A 271 MKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKAL 342 (452)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHH
Confidence 99999999854 6778999999988 56 9999999999987 3 467788889988876 34999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHhhcCCCcCCCCc
Q 048794 879 SLFDEMKKRGISPDLYTYNSLILNLGR----AGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~ 926 (967)
.+|+++.+.| +......|+.+|.. ..++++|..+++++.+..+..
T Consensus 343 ~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 343 DHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 9999998654 45677788888875 469999999999998776544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-15 Score=155.73 Aligned_cols=250 Identities=12% Similarity=0.093 Sum_probs=210.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC-hHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGR-VEELLKLYEEMSFRGCKPNTISHNIVI 725 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 725 (967)
...++..+...+...|++++|+..|+++++.+ +.+..+|+.++.++...|+ +++|+..|++++... +.+..+|..++
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35677788888899999999999999999875 3367889999999999997 999999999999985 44778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK-TGDV 804 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 804 (967)
.++...|++++|+..|++++..+ +.+..+|..++.++...|++++|+..|+++++..+ .+...|+.++.++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999874 55667899999999999999999999999999753 367799999999988 6665
Q ss_pred HHH-----HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 048794 805 ETA-----CELFKQMIKGGIRPD-LKSYSVLVDCLCMVG--RVDDALHYFEELKLNGLDADTISYNFMINGLGRSG---- 872 (967)
Q Consensus 805 ~~A-----~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 872 (967)
++| +..|++++. ..|+ ..+|+.++.++...| ++++|++.++++ +.+ +.+..++..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccc
Confidence 777 589999998 4676 689999999999988 689999999988 432 446778899999998874
Q ss_pred -----CHHHHHHHHHHH-HHcCCCCC-HHhHHHHHHHHHhc
Q 048794 873 -----RIEEALSLFDEM-KKRGISPD-LYTYNSLILNLGRA 906 (967)
Q Consensus 873 -----~~~~A~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~ 906 (967)
.+++|+++|+++ .+ +.|. ...|..++..+...
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHH
Confidence 359999999999 64 4555 47777777766643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-15 Score=150.46 Aligned_cols=248 Identities=12% Similarity=0.046 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChh----hHHHHH
Q 048794 650 MYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI----SHNIVI 725 (967)
Q Consensus 650 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~ 725 (967)
.+...+..+...|++++|+..|+++++..+ .+..++..++.++...|++++|+..++++...+ ++.. ++..++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHH
Confidence 445567777888899999999998887642 345578888899999999999999999998843 3332 378889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCCH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILI-NGFGKTGDV 804 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~ 804 (967)
.++...|++++|+..+++++... +....++..++.+|...|++++|+..|+++++.. +.+..+|..++ .+|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998864 4455688899999999999999999999998863 34667888888 5555 4599
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCC
Q 048794 805 ETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGR---VDDALHYFEELKLNG-LDAD------TISYNFMINGLGRSGR 873 (967)
Q Consensus 805 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~ 873 (967)
++|+..|+++++. .|+ ...+..++.++...|+ +++|...++++++.. ..|+ ..++..++.+|...|+
T Consensus 159 ~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 159 VKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 9999999999984 565 6788889999999888 888999999988521 1233 2578889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 048794 874 IEEALSLFDEMKKRGISPDLYTYNSLILNLGRA 906 (967)
Q Consensus 874 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 906 (967)
+++|.+.++++++. .|.+..++..+.......
T Consensus 237 ~~~A~~~~~~al~~-~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 237 KVKADAAWKNILAL-DPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHC------
T ss_pred HHHHHHHHHHHHhc-CccHHHHHHHhhhhhccc
Confidence 99999999999975 344567776666655443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-16 Score=154.35 Aligned_cols=216 Identities=15% Similarity=0.155 Sum_probs=140.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 719 ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGF 798 (967)
Q Consensus 719 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (967)
..+..++..+...|++++|...+++++... +.+...+..++.++...|++++|+..++++.+.. +.+..++..++.++
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344455555555666666666666665542 3344566667777777777777777777777653 23566777778888
Q ss_pred hccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048794 799 GKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEA 877 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 877 (967)
...|++++|+..++++++. .| +...+..++.++...|++++|...++++++.. +.+...+..++.++...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888887773 34 45677778888888888888888888877643 44666777788888888888888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCC
Q 048794 878 LSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENP 940 (967)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g 940 (967)
...++++.+. .+.+..++..++.++...|++++|...++++++++|+++.. ..++.+....|
T Consensus 179 ~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 179 LSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 8888888764 34456778888888888888888888888888888888876 45655554433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=149.04 Aligned_cols=284 Identities=12% Similarity=0.119 Sum_probs=95.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHH
Q 048794 239 KVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALE 318 (967)
Q Consensus 239 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 318 (967)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+ .+|..++..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3444555555555541 223455555555555555555555532 1334445555555555555555555
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 048794 319 TFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGC 398 (967)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 398 (967)
.++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 44444332 2234445555555666666655555542 244456666666666666666666666644
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 048794 399 EPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTL 478 (967)
Q Consensus 399 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 478 (967)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 24666666666666666666666665 155666666666666666666644333211 222223345
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhh--cCcHhHHHHHHHHHHhhcC-----CChhHHHhHHHHH
Q 048794 479 LHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVK--EQRVKDAIWFFHQMRKWLY-----PDHITLCTLLPGV 551 (967)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~ 551 (967)
+..|.+.|.+++|..+++..+..+ +-....|+.+.-.|.+ -++..+.++.|..-....+ .+...|..+.-.|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666554 3344455555444443 2344444444433222222 3445566666666
Q ss_pred HhcCChhHHHHHH
Q 048794 552 VKDGQIEDAFRLA 564 (967)
Q Consensus 552 ~~~~~~~~A~~~~ 564 (967)
...++++.|+..+
T Consensus 293 ~~~~e~d~A~~tm 305 (449)
T 1b89_A 293 DKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhhchHHHHHHHH
Confidence 6667777666543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.4e-15 Score=147.43 Aligned_cols=204 Identities=11% Similarity=-0.024 Sum_probs=133.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT 801 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 801 (967)
..++..+...|++++|...+++++... +.+...+..++.+|...|++++|++.++++.+.. +.+..++..++.++...
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH
Confidence 334444444444444444444444432 2234455666666667777777777777766643 23556677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
|++++|+..++++++.+..|+ ...+..++.++...|++++|..+++++++.. +.+...+..++.++...|++++|...
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777766323454 4566777777777777777777777777643 33566677777777777777777777
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 881 FDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++++.+. .+.+...+..++.++...|++++|.++++++++++|+++..
T Consensus 198 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 198 YDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 7777753 34445667777777777777888888777777777777765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-13 Score=140.65 Aligned_cols=225 Identities=10% Similarity=-0.027 Sum_probs=192.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCChhh
Q 048794 645 TSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK----SGRVEELLKLYEEMSFRGCKPNTIS 720 (967)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 720 (967)
+.++.++..++..+...|++++|+..|++..+. .+..++..++..+.. .+++++|+.+|+++...+ +..+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 345667788888888899999999999988873 356778888889988 999999999999998874 6778
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 721 HNIVISGLVK----SNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIYN 792 (967)
Q Consensus 721 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 792 (967)
+..++..|.. .+++++|+..|+++...+ +..++..++.+|.. .+++++|+..|+++.+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8888999998 999999999999999864 56678889999998 999999999999999864 667888
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 793 ILINGFGK----TGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDALHYFEELKLNGLDADTISYNFM 864 (967)
Q Consensus 793 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 864 (967)
.++.+|.. .+++++|+..|+++.+. .+...+..++.+|.. .+++++|+.+++++.+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 89999887 89999999999999985 356788899999999 999999999999999864 36778889
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHc
Q 048794 865 INGLGR----SGRIEEALSLFDEMKKR 887 (967)
Q Consensus 865 ~~~~~~----~g~~~~A~~~~~~~~~~ 887 (967)
+.+|.. .|++++|.+.++++.+.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 999998 99999999999999875
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=141.77 Aligned_cols=178 Identities=16% Similarity=0.132 Sum_probs=154.3
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVL 829 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 829 (967)
.+..+|..++.+|.+.|++++|++.|+++++.. +.+..+|..++.+|...|++++|+..++++... .|+ ...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 355688999999999999999999999999874 336779999999999999999999999999884 554 6788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMV 909 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 909 (967)
+.++...+++++|...+.++.... +.+...+..++.+|...|++++|++.++++++. .|.+..++..++.++.+.|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-cchhhhHHHHHHHHHHHCCCH
Confidence 999999999999999999998753 456788899999999999999999999999975 455678999999999999999
Q ss_pred HHHHHhhcCCCcCCCCcccccccee
Q 048794 910 EEARKLAGGNCFVQPSEFVSSELQV 934 (967)
Q Consensus 910 ~~A~~~~~~~l~~~p~~~~~~~l~~ 934 (967)
++|++.++++++++|+++. +.||.
T Consensus 158 ~~A~~~~~~al~~~p~~a~-~~lal 181 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKAK-YELAL 181 (184)
T ss_dssp HHHHHHHHHHHHTTHHHHH-HCSCC
T ss_pred HHHHHHHHHHHhCCccCHH-HHHHh
Confidence 9999999999999999864 34443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-16 Score=158.65 Aligned_cols=247 Identities=11% Similarity=-0.042 Sum_probs=126.8
Q ss_pred hcCChHHHHHHHHHHHHcCC---CcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 048794 660 EVHATEMGLDLFTTMKNAGC---APDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDK 736 (967)
Q Consensus 660 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 736 (967)
..+++++|+..|+++++... +.+..++..++..+...|++++|+..|+++...+ +.+..++..++.++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 55667777777777766421 1134456666666666777777777776666653 3345555666666666666666
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 737 AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
|+..+++++... +.+..++..++.+|...|++++|+..++++.+.. |+..........+...|++++|+..+++++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666666542 2234455555666666666666666666665532 2222222222233444566666666655554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 817 GGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 817 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
. .|+......++..+...++.++|+..+++++...... +...+..++.+|...|++++|...++++++ ..|+.
T Consensus 173 ~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 173 K--SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp H--SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred c--CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 2 2222222234444555555555666655554321000 134455555555566666666666655553 22322
Q ss_pred HhHHHHHHHHHhcCCHHHHHHhh
Q 048794 894 YTYNSLILNLGRAGMVEEARKLA 916 (967)
Q Consensus 894 ~~~~~l~~~~~~~g~~~~A~~~~ 916 (967)
+...+.++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 112234455555555555544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=142.70 Aligned_cols=207 Identities=9% Similarity=-0.023 Sum_probs=141.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 719 ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGF 798 (967)
Q Consensus 719 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (967)
..+..++..+...|++++|+..+++++... +.+...+..++.+|...|++++|+..++++.+.. +.+..++..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344555555556666666666666555542 2334456666777777777777777777777653 23556777777777
Q ss_pred hcc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 799 GKT-GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEE 876 (967)
Q Consensus 799 ~~~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 876 (967)
... |++++|+..++++++.+..|+ ...+..++.++...|++++|...++++++.. +.+...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 777 778888888877776323344 4667777777777888888888888777643 3356677777788888888888
Q ss_pred HHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 877 ALSLFDEMKKRGIS-PDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 877 A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
|...++++.+. .+ .+...+..++..+...|+.++|..+++.+...+|+++.+
T Consensus 166 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 166 ADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 88888877754 23 455666666777777788888888888777778877765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-16 Score=169.11 Aligned_cols=299 Identities=15% Similarity=0.033 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC---HhhHHHHHHHHHccCChHHHHHHHHHHHhC----CCCC-Chh
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPD---ISTYNLLLDGYGKSGRVEELLKLYEEMSFR----GCKP-NTI 719 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 719 (967)
...+...+..+...|++++|+..|+++++.++... ...+..++..+...|++++|+..++++... +.++ ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34444555555666666666666666655432110 234555666666666666666666655432 1011 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhcHHHHHHHHHcCCC--------------------HHHHHH
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSGGF-----SPTPCTYGPLIDGLSKSGR--------------------LEEAKK 774 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~A~~ 774 (967)
++..++.++...|++++|...+.+++.... .....++..++.+|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 455556666666666666666666554310 0112356666777777777 777777
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 048794 775 LFEEMLDY----GCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGG-IRPD----LKSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 775 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~ 844 (967)
.++++.+. +..+ ...++..++.+|...|++++|+..++++++.. ..++ ..++..++.++...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77766532 1011 12367777777778888888888888776520 0112 2366777788888888888888
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCCHHHHHH
Q 048794 845 YFEELKLN----GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKR----GISPD-LYTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 845 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 914 (967)
+++++++. +..+ ...++..++.+|...|++++|...++++.+. +.++. ..++..++.++...|++++|+.
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877642 1001 1446667778888888888888888877632 11111 3566677788888888888888
Q ss_pred hhcCCCcCCCCcc------cc-ccceeeeccCCCccccc
Q 048794 915 LAGGNCFVQPSEF------VS-SELQVIYAENPRATSLS 946 (967)
Q Consensus 915 ~~~~~l~~~p~~~------~~-~~l~~~~~~~g~~~~~~ 946 (967)
++++++++.++.. .+ ..++.+|...|+..+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 8888777644332 22 36777777777775533
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=8.3e-15 Score=149.40 Aligned_cols=243 Identities=11% Similarity=-0.062 Sum_probs=149.8
Q ss_pred ccCChHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHH
Q 048794 695 KSGRVEELLKLYEEMSFRGC---KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEE 771 (967)
Q Consensus 695 ~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 771 (967)
..|++++|+..|+++..... +.+..++..++.++...|++++|+..|++++... +.+..++..++.+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34667777777777766421 1123456666777777777777777777777653 3345566677777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 772 AKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 772 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
|+..|+++++.. +.+..++..++.+|...|++++|+..|+++++ ..|+..........+...|++++|...+++++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777777653 22456677777777777777777777777766 345433333333444555777777777766665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc
Q 048794 852 NGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-----LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 852 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 926 (967)
.. +++...+ .++..+...++.++|...++++.+. .|+ ...+..++.++...|++++|+..+++++.++|++
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 32 2333322 3556666666677777777766532 221 3566677777777777777777777777777766
Q ss_pred cccccceeeeccCCCcccccc
Q 048794 927 FVSSELQVIYAENPRATSLSH 947 (967)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~~~~ 947 (967)
+. ..+.++...|+++++..
T Consensus 249 ~~--~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 249 FV--EHRYALLELSLLGQDQD 267 (275)
T ss_dssp CH--HHHHHHHHHHHHHHC--
T ss_pred HH--HHHHHHHHHHHHHhhHH
Confidence 55 23445566666666655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-14 Score=142.88 Aligned_cols=215 Identities=16% Similarity=0.128 Sum_probs=148.0
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
....+..++..+...|++++|+.+|+++.... +.+...+..++.++...|++++|+..+++++... +.+...+..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556667777777788888888888777654 4456677777777888888888888888777653 345567777888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 840 (967)
++...|++++|++.++++.+.. +.+..++..++.++...|++++|+..++++++. .| +...+..++.++...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888888764 336678888888888888999999999888874 44 4677888888888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 841 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
+|...++++++.. +.+..++..++.++...|++++|...++++++. .+.+..++..++...
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI-QPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-CTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-CcchHHHHHHHHHHH
Confidence 9999998888753 446777888888899999999999999988864 344445555554433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=162.06 Aligned_cols=276 Identities=17% Similarity=0.095 Sum_probs=187.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH----hhHHHHHHHHHccCChHHHHHHHHHHHhCC-----CCCChhhH
Q 048794 651 YNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDI----STYNLLLDGYGKSGRVEELLKLYEEMSFRG-----CKPNTISH 721 (967)
Q Consensus 651 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~ 721 (967)
+..++..+...|++++|+..|+++++.++. +. ..+..++..+...|++++|+..|+++.... .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344556667777777777777777776322 22 356677777777788888888777765431 11123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCChhcHHHHHHHHHcCCC-----------------HHHHHHHHHHH
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSG----G-FSPTPCTYGPLIDGLSKSGR-----------------LEEAKKLFEEM 779 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~ 779 (967)
..++.+|...|++++|...+++++.. + .+....++..++.+|...|+ +++|+..++++
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 67777777888888888877776654 1 11223467777888888888 88888888776
Q ss_pred HHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 780 LDY----GCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGI-RPD----LKSYSVLVDCLCMVGRVDDALHYFEEL 849 (967)
Q Consensus 780 ~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 849 (967)
.+. +..+ ...++..++.+|...|++++|+..++++++... .++ ..++..++.+|...|++++|..+++++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 1111 123777888888888888889888888876200 111 236778888888889999999888887
Q ss_pred HHCC--C-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 850 KLNG--L-DA--DTISYNFMINGLGRSGRIEEALSLFDEMKKR----GISPD-LYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 850 ~~~~--~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
++.. . .+ ...++..++.++...|++++|...++++++. +..+. ..++..++.++...|++++|..+++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7421 0 11 2456778888888899999999888887732 11111 246778888888889999999998888
Q ss_pred CcCCCCcc
Q 048794 920 CFVQPSEF 927 (967)
Q Consensus 920 l~~~p~~~ 927 (967)
+++.++-.
T Consensus 370 l~~~~~~~ 377 (411)
T 4a1s_A 370 LQLAXXXX 377 (411)
T ss_dssp HHHCCHHH
T ss_pred HHHHhhcc
Confidence 87765543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=164.61 Aligned_cols=215 Identities=13% Similarity=-0.022 Sum_probs=175.1
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHH
Q 048794 697 GRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSI-DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKL 775 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 775 (967)
+++++++..+.+..... +.+...+..++.++...|++ ++|+..|+++++.. +.+..++..++.+|...|++++|+..
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35778888888777653 44667888888888888998 99999999888864 44567888888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc--------C
Q 048794 776 FEEMLDYGCKPNCVIYNILINGFGKT---------GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMV--------G 837 (967)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g 837 (967)
|+++++. .|+...+..++.+|... |++++|+..|+++++. .|+ ...+..++.+|... |
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 9998885 46677888888888888 8899999999998883 565 67888888888888 8
Q ss_pred CHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 048794 838 RVDDALHYFEELKLNGLD---ADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 838 ~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 914 (967)
++++|+..|+++++.+ + .+...+..++.+|...|++++|...|+++++. .|.+...+..++.++...|++++|++
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-DPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999988753 3 46778888999999999999999999988864 34456788888888888899999998
Q ss_pred hhcCC
Q 048794 915 LAGGN 919 (967)
Q Consensus 915 ~~~~~ 919 (967)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 88876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-15 Score=140.55 Aligned_cols=169 Identities=13% Similarity=0.118 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMI 865 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 865 (967)
+..+|..++.+|...|++++|+..|+++++ ..|+ ..++..++.+|...|++++|...++++.... +.....+..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 677999999999999999999999999998 4676 6899999999999999999999999998753 45677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCccc
Q 048794 866 NGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATS 944 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~ 944 (967)
..+...++++.|...+.++.+. .+.+...+..++.++...|++++|++.++++++++|+++.+ ..+|.+|...|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999975 45567899999999999999999999999999999999998 799999999999999
Q ss_pred ccchhhhhhcccccc
Q 048794 945 LSHKHCEYLASSCTF 959 (967)
Q Consensus 945 ~~~~~~~~~~~~~~~ 959 (967)
|...+.+.+..+|..
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 999666777777654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-13 Score=135.05 Aligned_cols=200 Identities=15% Similarity=0.036 Sum_probs=142.3
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHH
Q 048794 683 ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDG 762 (967)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 762 (967)
...+..++..+...|++++|+.+|+++.... +.+..++..++.++...|++++|...+++++... +.+...+..++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455666666667777777777777766653 3345566666777777777777777777776653 3345567777777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 840 (967)
|...|++++|++.++++.+.+..| +...+..++.++...|++++|+..++++++. .|+ ..++..++.++...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHH
Confidence 888888888888888877622233 3457777788888888888888888888774 343 667778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 841 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
+|..+++++++.. +.+...+..++.++...|++++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888887653 446667777888888888888888888888763
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-15 Score=158.94 Aligned_cols=296 Identities=14% Similarity=0.065 Sum_probs=225.5
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHhhHH
Q 048794 615 VVPIIKLFCRQKKALAAKDLFVKFTENLGVTST--LEMYNYLIHGLLEVHATEMGLDLFTTMKNA----GCAP-DISTYN 687 (967)
Q Consensus 615 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~ 687 (967)
....+..+...|++++|...|++.+...+..+. ..++..++..+...|++++|+..+++++.. +..| ...++.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 356788999999999999999999876332221 357788899999999999999999987653 1112 245678
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCK-PN----TISHNIVISGLVKSNS--------------------IDKAMDLFY 742 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 742 (967)
.++..+...|++++|+..++++...... ++ ..++..++.+|...|+ +++|...+.
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 8899999999999999999998764211 11 3367888899999999 999999998
Q ss_pred HHHhC----C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHH
Q 048794 743 NLVSG----G-FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC-KPN----CVIYNILINGFGKTGDVETACELFK 812 (967)
Q Consensus 743 ~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 812 (967)
+++.. + .+....++..++.+|...|++++|+..++++.+... .++ ..++..++.+|...|++++|+..++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 87754 1 111234678899999999999999999999875311 122 2378889999999999999999999
Q ss_pred HHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 813 QMIKG----GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DTISYNFMINGLGRSGRIEEALSLFD 882 (967)
Q Consensus 813 ~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 882 (967)
++++. +..+. ..++..++.++...|++++|..+++++++. +..+ ...++..++.+|...|++++|...++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 98752 11111 457889999999999999999999998752 1111 25578889999999999999999999
Q ss_pred HHHHc----CCCCC-HHhHHHHHHHHHhcCCHH
Q 048794 883 EMKKR----GISPD-LYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 883 ~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~ 910 (967)
++++. +.++. ..++..++.++...|+..
T Consensus 332 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 332 KHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 98732 21222 356778888888877653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-13 Score=136.94 Aligned_cols=251 Identities=11% Similarity=0.045 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHH-------ccCCh-------HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048794 665 EMGLDLFTTMKNAGCAPDISTYNLLLDGYG-------KSGRV-------EELLKLYEEMSFRGCKPNTISHNIVISGLVK 730 (967)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 730 (967)
++|+..|++++... +.+...|..++..+. +.|++ ++|..+|++++..-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888898888764 346777888877765 35776 8999999999983123455688889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChh-cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHH
Q 048794 731 SNSIDKAMDLFYNLVSGGFSPTPC-TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFG-KTGDVETAC 808 (967)
Q Consensus 731 ~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~ 808 (967)
.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|+.+|+++++.. +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999863 22333 78888999999999999999999999864 334556665554432 368999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 809 ELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNG-LDA--DTISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 809 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
.+|+++++. .|+ ...+..++..+.+.|++++|..+|++++... ++| ....|..++..+...|+.++|..+++++
T Consensus 190 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999884 454 6788889999999999999999999999852 344 4567888888899999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccce
Q 048794 885 KKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQ 933 (967)
Q Consensus 885 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~ 933 (967)
.+. .|.+.... .+... .--.+++.++|+++.. +.||
T Consensus 268 ~~~-~p~~~~~~-~~~~~-----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 268 FTA-FREEYEGK-ETALL-----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHH-TTTTTSSC-HHHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred HHH-cccccccc-hHHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence 864 33222221 11111 2222888899999987 5665
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=153.82 Aligned_cols=275 Identities=16% Similarity=0.055 Sum_probs=188.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcC---HhhHHHHHHHHHccCChHHHHHHHHHHHhC----C-CCCChhhHHH
Q 048794 652 NYLIHGLLEVHATEMGLDLFTTMKNAGCAPD---ISTYNLLLDGYGKSGRVEELLKLYEEMSFR----G-CKPNTISHNI 723 (967)
Q Consensus 652 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~ 723 (967)
...+..+...|++++|+..|+++++..+... ...+..++..+...|++++|+.+++++... + .+....++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3445566677777777777777776532211 245666777777777777777777776543 1 0111335666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CC----ChhcHHHHHHHHHcCCC--------------------HHHHHHHHHH
Q 048794 724 VISGLVKSNSIDKAMDLFYNLVSGGF-SP----TPCTYGPLIDGLSKSGR--------------------LEEAKKLFEE 778 (967)
Q Consensus 724 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~ 778 (967)
++.++...|++++|...+++++.... .. ...++..++..|...|+ +++|+..+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 77777778888888887777665310 01 12366777888888888 8888888887
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 779 MLDY----GCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGG-IRPD----LKSYSVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 779 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
+.+. +..+ ...++..++.++...|++++|+..++++++.. ..++ ..++..++.++...|++++|..++++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7542 1111 13378888899999999999999999987520 0112 24778889999999999999999999
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcC
Q 048794 849 LKLN----GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKR----GISPD-LYTYNSLILNLGRAGMVEEARKLAGG 918 (967)
Q Consensus 849 ~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 918 (967)
+++. +..+ ...++..++.++...|++++|...++++.+. +.++. ..++..++.++...|++++|..++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8742 1011 1457788999999999999999999988742 11111 35777899999999999999999999
Q ss_pred CCcCCCCc
Q 048794 919 NCFVQPSE 926 (967)
Q Consensus 919 ~l~~~p~~ 926 (967)
++++.|+.
T Consensus 329 a~~~~~~~ 336 (338)
T 3ro2_A 329 HLEISREV 336 (338)
T ss_dssp HHHC----
T ss_pred HHHHHHhh
Confidence 99887753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-13 Score=139.05 Aligned_cols=224 Identities=12% Similarity=0.082 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 048794 700 EELLKLYEEMSFRGCKPNTISHNIVISGLVK-------SNSI-------DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK 765 (967)
Q Consensus 700 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 765 (967)
++|+..|++++... +.+...|..++..+.. .|++ ++|...|++++..-.+.....|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 78899999999864 5567788888887763 5875 8999999999984234556688999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH-hcCCHHH
Q 048794 766 SGRLEEAKKLFEEMLDYGCKP-NCV-IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC-MVGRVDD 841 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~~ 841 (967)
.|++++|..+|+++++. .| +.. +|..++..+.+.|++++|..+|+++++. .|+ ...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 34 344 8999999999999999999999999984 343 455554444433 3699999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--HHhHHHHHHHHHhcCCHHHHHHhhcC
Q 048794 842 ALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG-ISPD--LYTYNSLILNLGRAGMVEEARKLAGG 918 (967)
Q Consensus 842 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 918 (967)
|..+|+++++.. +.+...+..++..+.+.|++++|..+|+++++.. ++|+ ..+|..++..+...|++++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999753 4477889999999999999999999999999742 4553 47889999999999999999999999
Q ss_pred CCcCCCCcccc
Q 048794 919 NCFVQPSEFVS 929 (967)
Q Consensus 919 ~l~~~p~~~~~ 929 (967)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999998763
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.9e-13 Score=129.88 Aligned_cols=200 Identities=14% Similarity=0.058 Sum_probs=145.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
+...+..++..+...|++++|+.+|+++.... +.+...+..++.++...|++++|...+++++... +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34456666667777777777777777776653 3345566677777777777777777777777653 334556777788
Q ss_pred HHHcC-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 048794 762 GLSKS-GRLEEAKKLFEEMLDYGCKPN-CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGR 838 (967)
Q Consensus 762 ~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 838 (967)
++... |++++|+..++++.+.+..|+ ..++..++.++...|++++|+..++++++. .|+ ...+..++.++...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCC
Confidence 88888 888888888888877222233 457788888888888888888888888773 444 6778888888888888
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 839 VDDALHYFEELKLNGLD-ADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 839 ~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+++|...++++++.. + .+...+..++..+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888888887653 3 4666677777778888888888888888775
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-14 Score=151.19 Aligned_cols=303 Identities=11% Similarity=0.006 Sum_probs=215.9
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhcCC-CCCH--HHHHHHHH--HHHhcCChHHHH-----------HHHHHHHHcCCCcC
Q 048794 619 IKLFCRQKKALAAKDLFVKFTENLGV-TSTL--EMYNYLIH--GLLEVHATEMGL-----------DLFTTMKNAGCAPD 682 (967)
Q Consensus 619 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~--~~~~~l~~--~~~~~~~~~~A~-----------~~~~~~~~~~~~~~ 682 (967)
.....+.++.++|..++.++....+. ..+. ..+..++. ...-.+..+.+. +.++.+... +++
T Consensus 19 w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~ 96 (383)
T 3ulq_A 19 WYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QAR 96 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCC
Confidence 34567899999999999998654433 2333 33333322 111223333333 555555432 112
Q ss_pred Hhh------HHHHHHHHHccCChHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC
Q 048794 683 IST------YNLLLDGYGKSGRVEELLKLYEEMSFRGCK-P----NTISHNIVISGLVKSNSIDKAMDLFYNLVSG--GF 749 (967)
Q Consensus 683 ~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~ 749 (967)
... +...+..+...|++++|+..|+++...... + ...++..++.+|...|++++|+..+.+++.. ..
T Consensus 97 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 97 LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 222 233777889999999999999999874111 1 2357788899999999999999999998875 11
Q ss_pred C----CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhC---
Q 048794 750 S----PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC-KPNC----VIYNILINGFGKTGDVETACELFKQMIKG--- 817 (967)
Q Consensus 750 ~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 817 (967)
. ....++..++.+|...|++++|+..++++++... .++. .++..++.+|...|++++|+..++++++.
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 1 1234678899999999999999999999875311 1122 37888999999999999999999998871
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC
Q 048794 818 -GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNG---LDA-DTISYNFMINGLGRSGR---IEEALSLFDEMKKRG 888 (967)
Q Consensus 818 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 888 (967)
+..|. ..++..++.++...|++++|..+++++++.. -.| ....+..++.++...|+ +++|+..+++. +
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~ 333 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---M 333 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---T
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---c
Confidence 22255 5788999999999999999999999987521 022 22335678899999999 77777777766 2
Q ss_pred CCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc
Q 048794 889 ISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 889 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 926 (967)
..|+ ..++..++.++...|++++|..++++++++...-
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 3333 3677889999999999999999999988765543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=151.76 Aligned_cols=214 Identities=11% Similarity=-0.037 Sum_probs=184.9
Q ss_pred ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCh-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048794 663 ATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRV-EELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLF 741 (967)
Q Consensus 663 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 741 (967)
.+++++..++...... +.+...+..++..+...|++ ++|+..|+++++.. +.+..++..++.+|...|++++|+..|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4778888888776543 34778899999999999999 99999999999875 446788999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------CCH
Q 048794 742 YNLVSGGFSPTPCTYGPLIDGLSKS---------GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT--------GDV 804 (967)
Q Consensus 742 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 804 (967)
++++... |+...+..++.+|... |++++|+..|+++++.. +.+...|..++.+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999875 4467889999999999 99999999999999874 33677999999999988 999
Q ss_pred HHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 805 ETACELFKQMIKGGIRP----DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 805 ~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
++|+..|+++++ ..| +..++..++.+|...|++++|...|+++++.+ +.+..++..++.++...|++++|++.
T Consensus 238 ~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 456 57899999999999999999999999999854 44677889999999999999999887
Q ss_pred HHHH
Q 048794 881 FDEM 884 (967)
Q Consensus 881 ~~~~ 884 (967)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-14 Score=138.80 Aligned_cols=210 Identities=10% Similarity=0.006 Sum_probs=156.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 715 KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNIL 794 (967)
Q Consensus 715 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 794 (967)
+.|+..+...+..+...|++++|+..|++++...++++...+..++.++...|++++|+..++++++.. +.+..+|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 345677888888888999999999999998887543666677778888999999999999999988863 2245588888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 048794 795 INGFGKTGDVETACELFKQMIKGGIRPD-L-------KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFM 864 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 864 (967)
+.+|...|++++|+..|+++++. .|+ . .++..++.++...|++++|+..|+++++.+ +. ...++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHH
Confidence 88899999999999999998883 554 4 457788888888999999999999988753 22 35677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeee
Q 048794 865 INGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIY 936 (967)
Q Consensus 865 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~ 936 (967)
+.+|...|+ ..++++... .+.+...+.. ......+.+++|+.+++++++++|+++.. ..++.+.
T Consensus 160 ~~~~~~~~~-----~~~~~a~~~-~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGA-----DVLRKATPL-ASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHHGGG-TTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHhc-ccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888865553 334555433 2223333322 23445677899999999999999999987 4565554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-14 Score=152.12 Aligned_cols=273 Identities=13% Similarity=0.057 Sum_probs=212.8
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CcCHhhHH
Q 048794 615 VVPIIKLFCRQKKALAAKDLFVKFTENLGVTST--LEMYNYLIHGLLEVHATEMGLDLFTTMKNA----GC-APDISTYN 687 (967)
Q Consensus 615 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~ 687 (967)
+..++..+...|++++|...|++.+......+. ..++..++..+...|++++|+..+++.++. +. .....++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 446788999999999999999999876322211 247788899999999999999999988764 11 22355788
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHH
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRG-----CKPNTISHNIVISGLVKSNS-----------------IDKAMDLFYNLV 745 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~ 745 (967)
.++..+...|++++|+..|+++.... .+....++..++.+|...|+ +++|+..+++++
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 89999999999999999999987641 11223477888899999999 999999998876
Q ss_pred hC----C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048794 746 SG----G-FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK-PN----CVIYNILINGFGKTGDVETACELFKQMI 815 (967)
Q Consensus 746 ~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 815 (967)
.. + .+....++..++.+|...|++++|+..++++.+.... ++ ..++..++.+|...|++++|+..+++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 53 1 1222347888999999999999999999998763111 12 2278889999999999999999999987
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 816 KGGI-RPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 816 ~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
.... ..+ ..++..++.++...|++++|..++++++.. +..+ ...++..++.+|...|++++|...+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6210 011 467889999999999999999999998752 1011 24578889999999999999999999998
Q ss_pred Hc
Q 048794 886 KR 887 (967)
Q Consensus 886 ~~ 887 (967)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-11 Score=135.80 Aligned_cols=225 Identities=11% Similarity=0.014 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHH
Q 048794 701 ELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAM-DLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEM 779 (967)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 779 (967)
....+|++++... +.....|...+..+...|+.++|. .+|++++.. .+.+...+...+....+.|+++.|.++|+++
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445666666553 445566666666666677777775 777777654 2334445556666777777777777777777
Q ss_pred HHCCC---------CCC------------HHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 048794 780 LDYGC---------KPN------------CVIYNILINGFGKTGDVETACELFKQMIKG-GIRPDLKSYSVLVDCLCMVG 837 (967)
Q Consensus 780 ~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g 837 (967)
++... .|+ ..+|...+....+.|+.+.|..+|.++++. + .+....|...+....+.+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 65210 121 225666666666777777788888877763 1 112234444444444443
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CH-HhHHHHHHHHHhcCCHHHHHH
Q 048794 838 -RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP-DL-YTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 838 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~g~~~~A~~ 914 (967)
+.+.|..+|+.+++. .+.++..+...++.....|+.+.|..+|++++....++ +. ..|..++..-...|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 477788887777764 34455666667777777777888888888777531111 12 566677777777787778888
Q ss_pred hhcCCCcCCCCcccc
Q 048794 915 LAGGNCFVQPSEFVS 929 (967)
Q Consensus 915 ~~~~~l~~~p~~~~~ 929 (967)
+.+++.+..|+++..
T Consensus 563 v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 563 LEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHSTTCCHH
T ss_pred HHHHHHHhCCCCcHH
Confidence 888888777776653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-14 Score=151.48 Aligned_cols=291 Identities=10% Similarity=-0.007 Sum_probs=208.3
Q ss_pred HHhcCChHHHHHHHHHHHHc--CCCcCH--hhHHHHHHH--HHccCChHHHH-----------HHHHHHHhCCCCCChhh
Q 048794 658 LLEVHATEMGLDLFTTMKNA--GCAPDI--STYNLLLDG--YGKSGRVEELL-----------KLYEEMSFRGCKPNTIS 720 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~ 720 (967)
+.+.+++++|..+++++.+. ..+.+. ..+..++.. ....+..+.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 44789999999999988764 222233 333333221 12223333443 566665442 112122
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC---ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC-
Q 048794 721 ------HNIVISGLVKSNSIDKAMDLFYNLVSG--GFSP---TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK-PN- 787 (967)
Q Consensus 721 ------~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~- 787 (967)
+...+..+...|++++|+..+++++.. ..+. ...++..++.+|...|++++|+..++++++.... ++
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 223677788999999999999999875 1111 2357889999999999999999999998763111 11
Q ss_pred ----HHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 048794 788 ----CVIYNILINGFGKTGDVETACELFKQMIKG----GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GL 854 (967)
Q Consensus 788 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~ 854 (967)
..+++.++.+|...|++++|+..|+++++. +..+. ..++..++.+|...|++++|+.+++++++. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 247889999999999999999999998862 11111 257889999999999999999999999861 22
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CCC-HHhHHHHHHHHHhcCC---HHHHHHhhcCCCcCCCCc
Q 048794 855 -DADTISYNFMINGLGRSGRIEEALSLFDEMKKRG--I-SPD-LYTYNSLILNLGRAGM---VEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 855 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~~ 926 (967)
+....++..++.++...|++++|...++++++.. . .|. ...+..++.++...|+ +++|+.++++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 2345678899999999999999999999987421 0 122 2335678889999999 99999999988 333433
Q ss_pred ccc-ccceeeeccCCCcccccchhhh
Q 048794 927 FVS-SELQVIYAENPRATSLSHKHCE 951 (967)
Q Consensus 927 ~~~-~~l~~~~~~~g~~~~~~~~~~~ 951 (967)
... ..||.+|...|++++|..-+.+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334 5899999999999998874433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=144.26 Aligned_cols=272 Identities=14% Similarity=0.076 Sum_probs=209.8
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHhhHHH
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKFTENLGVTST--LEMYNYLIHGLLEVHATEMGLDLFTTMKNA----GCAP-DISTYNL 688 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ 688 (967)
...+..+...|++++|...|++.+......+. ...+..++..+...|++++|+..+++.++. +..| ...++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 45678899999999999999999876322221 357778899999999999999999887653 1111 2556788
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 048794 689 LLDGYGKSGRVEELLKLYEEMSFRGCK-PN----TISHNIVISGLVKSNS--------------------IDKAMDLFYN 743 (967)
Q Consensus 689 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 743 (967)
++..+...|++++|+..++++...... ++ ..++..++..+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 899999999999999999998764211 12 2367788889999999 9999999988
Q ss_pred HHhC----C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHH
Q 048794 744 LVSG----G-FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC-KPN----CVIYNILINGFGKTGDVETACELFKQ 813 (967)
Q Consensus 744 ~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 813 (967)
++.. + .+....++..++..+...|++++|+..++++.+... .++ ..++..++.++...|++++|+..+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7653 1 112234678889999999999999999999875311 112 23788899999999999999999999
Q ss_pred HHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 814 MIKG----GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DTISYNFMINGLGRSGRIEEALSLFDE 883 (967)
Q Consensus 814 ~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 883 (967)
+++. +..+. ..++..++.++...|++++|..+++++++. +..+ ...++..++.+|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8762 11111 457788999999999999999999998752 1011 244778899999999999999999999
Q ss_pred HHHc
Q 048794 884 MKKR 887 (967)
Q Consensus 884 ~~~~ 887 (967)
+.+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9863
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=150.18 Aligned_cols=205 Identities=17% Similarity=0.142 Sum_probs=121.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSG-------GFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY------GCKP 786 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~ 786 (967)
++..++.++...|++++|...+++++.. ..+....++..++.+|...|++++|+..++++.+. +..|
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3344444444444444444444444432 11222345667777777888888888888777653 1112
Q ss_pred -CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 048794 787 -NCVIYNILINGFGKTGDVETACELFKQMIKG------GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN------ 852 (967)
Q Consensus 787 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 852 (967)
...++..++.++...|++++|+..++++++. +..|. ..++..++.++...|++++|..+++++++.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2346778888888888888888888888762 11333 356778888888889999998888888742
Q ss_pred -CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCC
Q 048794 853 -GLDAD-------TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 853 -~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 924 (967)
...+. ...+..++..+...+.+.+|...++.+... .+....++..++.++...|++++|+.++++++++.|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 11111 112223334445566666777777777642 222347788899999999999999999999988877
Q ss_pred C
Q 048794 925 S 925 (967)
Q Consensus 925 ~ 925 (967)
+
T Consensus 310 ~ 310 (311)
T 3nf1_A 310 Q 310 (311)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-14 Score=158.61 Aligned_cols=174 Identities=17% Similarity=0.134 Sum_probs=149.4
Q ss_pred CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 048794 750 SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSV 828 (967)
Q Consensus 750 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ 828 (967)
+.+..++..++.+|.+.|++++|++.|+++++.. +.+..+|..++.+|.+.|++++|++.|+++++ +.|+ ..++..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~n 82 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSN 82 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 3345678889999999999999999999999864 22567899999999999999999999999998 5676 688999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 048794 829 LVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGM 908 (967)
Q Consensus 829 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 908 (967)
++.+|...|++++|++.|+++++.+ +.+..++..++.+|...|++++|+..|+++++. .|.+..++..++.++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHhhhhhHHHhccc
Confidence 9999999999999999999999853 346788999999999999999999999999974 34456889999999999999
Q ss_pred HHHHHHhhcCCCcCCCCccc
Q 048794 909 VEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 909 ~~~A~~~~~~~l~~~p~~~~ 928 (967)
+++|++.+++++++.|+...
T Consensus 161 ~~~A~~~~~kal~l~~~~~~ 180 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVADQLE 180 (723)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhHHh
Confidence 99999999999988887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-14 Score=160.18 Aligned_cols=163 Identities=17% Similarity=0.119 Sum_probs=147.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMI 865 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 865 (967)
+..+|+.++.+|.+.|++++|++.|+++++ ..|+ ..++..++.+|.+.|++++|+..|+++++.+ +....++..++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 355899999999999999999999999999 5777 6899999999999999999999999999854 44678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCccc
Q 048794 866 NGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATS 944 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~ 944 (967)
.+|...|++++|++.|+++++. .+.+..++..++.++...|++++|++.++++++++|+++.+ .+||.+|...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l-~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI-NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999999974 34456999999999999999999999999999999999998 699999999999999
Q ss_pred ccchhhhhh
Q 048794 945 LSHKHCEYL 953 (967)
Q Consensus 945 ~~~~~~~~~ 953 (967)
|...+.+.+
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-10 Score=129.18 Aligned_cols=472 Identities=10% Similarity=0.033 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHH
Q 048794 349 GEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADR---VDEAWEMF 425 (967)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~ 425 (967)
.+-...++.....+ +-|...|..++..+.+.+.++.+..+++.++.. .+.....|...+....+.+. .+.+..+|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34444444444433 567788888888887778888888888888765 35556677777777777777 88888888
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CC-cHHHHHHHHHHHH---------h
Q 048794 426 CRMKDMK-LAPTVVTYNTLLSGLGKEGQV--------QKAIELFEGMTD-HGC-FP-NTVTFNTLLHCLC---------K 484 (967)
Q Consensus 426 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~ 484 (967)
++..... ..|++..|...+....+.++. +...++|+..+. .|. .+ +..+|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 8877643 136777777766655544432 233456665543 344 33 3456665554432 2
Q ss_pred cCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHH
Q 048794 485 NEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLA 564 (967)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 564 (967)
+++++.+..+|+.++......-..+|......-...+ ...+..++.+. ...+..|...+
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~--------------------~~~y~~Ar~~~ 265 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL--------------------SAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH--------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh--------------------hHHHHHHHHHH
Confidence 2345667777777765321111222222211111000 01111111110 11222232222
Q ss_pred HHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCC
Q 048794 565 KCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGV 644 (967)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 644 (967)
+..-.. ..++... -|..... ....+.|............+.+ |-.+.+..+.
T Consensus 266 ~e~~~~-------------~~~l~r~-~p~~~~~----~~~~~~p~~~~~~~~ql~lW~~----------yi~fEk~~~~ 317 (679)
T 4e6h_A 266 QDWLNI-------------TKGLKRN-LPITLNQ----ATESNLPKPNEYDVQQLLIWLE----------WIRWESDNKL 317 (679)
T ss_dssp HHHHHH-------------TTTCCCC-CCSSSTT----CCTTTSCCTTCCCHHHHHHHHH----------HHHHHHTCTT
T ss_pred HHHHHH-------------HHhHhhc-ccccccc----chhccCCCCchhHHHHHHHHHH----------HHHHHHhCCc
Confidence 211100 0000000 0000000 0000111111100011111110 0001011000
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHH-HHHHHHHhCCCCCChhhHHH
Q 048794 645 TSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELL-KLYEEMSFRGCKPNTISHNI 723 (967)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~ 723 (967)
..... .....+..+|++.+... +.....|...+..+...|+.++|. .+|+++.... +.+...+..
T Consensus 318 ~l~~~------------~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~ 383 (679)
T 4e6h_A 318 ELSDD------------LHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFS 383 (679)
T ss_dssp CCCHH------------HHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccch------------hhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 00000 01123445666666543 335666777777777777777776 7777777653 445555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----------CCC-----------ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 724 VISGLVKSNSIDKAMDLFYNLVSGG----------FSP-----------TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 724 l~~~~~~~~~~~~A~~~~~~~~~~~----------~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
.+......|+++.|.++|++++... .+. ...+|...+....+.|..+.|..+|.++.+.
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666677777777777777776531 111 1235667777777788888888888888874
Q ss_pred CCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CH
Q 048794 783 GCKPNCVIYNILINGFGKT-GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DT 858 (967)
Q Consensus 783 ~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~ 858 (967)
........|...+....+. ++.+.|..+|++.++. .|+ ...+...+......|+.+.|..+|++++....++ ..
T Consensus 464 ~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 464 KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 1122344555555554444 4588888888888874 343 5556677777777888888888888888753221 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 859 ISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
..|..++..-...|+.+.+.++.+++.+.
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677777777888888888888888864
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-13 Score=125.14 Aligned_cols=171 Identities=19% Similarity=0.137 Sum_probs=145.5
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDC 832 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 832 (967)
..+..++..+...|++++|+..++++.+.. +.+..++..++.++...|++++|+..++++++. .| +..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 456677888888999999999998887753 346778888999999999999999999998874 44 46788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 048794 833 LCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEA 912 (967)
Q Consensus 833 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 912 (967)
+...|++++|.++++++.+.. +.+...+..++.++...|++++|...++++.+. .+.+..++..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998753 457778888999999999999999999999875 455678889999999999999999
Q ss_pred HHhhcCCCcCCCCcccc
Q 048794 913 RKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 913 ~~~~~~~l~~~p~~~~~ 929 (967)
..+++++++++|+++..
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 164 LPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHcCCCchhh
Confidence 99999999999998875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=132.94 Aligned_cols=213 Identities=13% Similarity=0.023 Sum_probs=152.3
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhcHHHHHHHHHcCCCHHHH
Q 048794 698 RVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSG----GFSP-TPCTYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A 772 (967)
++++|+..|+++ +..|...|++++|...|.+++.. +.++ ...++..++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 466777776665 23456677777777777766653 1111 135677888888888888888
Q ss_pred HHHHHHHHHCCCC-CC----HHHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCC---C----HHHHHHHHHHHHhcCCH
Q 048794 773 KKLFEEMLDYGCK-PN----CVIYNILINGFGKT-GDVETACELFKQMIKGGIRP---D----LKSYSVLVDCLCMVGRV 839 (967)
Q Consensus 773 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p---~----~~~~~~l~~~~~~~g~~ 839 (967)
+..|+++++.... .+ ..++..++.+|... |++++|+..|+++++. .| + ..++..++.++...|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 8888888753111 11 34788899999986 9999999999998872 22 1 35678889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HhHHHHHHHHH--h
Q 048794 840 DDALHYFEELKLNGLDADT------ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL------YTYNSLILNLG--R 905 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~ 905 (967)
++|+..|+++++....... ..+..++.++...|++++|...++++++ +.|+. ..+..++..+. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 9999999999875322211 2567888999999999999999999884 44442 13445555554 4
Q ss_pred cCCHHHHHHhhcCCCcCCCCcccc
Q 048794 906 AGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 906 ~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.+++++|++.+++++.++|.+...
T Consensus 253 ~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp TTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHhccCCccHHHHHHH
Confidence 578999999999999999988654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=149.28 Aligned_cols=117 Identities=18% Similarity=0.249 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHH---cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 048794 53 YSYNGFIHFILQSGFCREALAVYKRVVS---EGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICI 129 (967)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (967)
.+|+++|..|.+.|+.++|..+|+.|.+ .|+.||..+||+||.++++.|++++|.++|++|...|+.||+.+|+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4677777777777777777777766543 3567777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048794 130 RILGRAGK-IDEAYRILKRMDDEGCGPDVVTYTVLIDALCT 169 (967)
Q Consensus 130 ~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (967)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 77777776 46777777777777777777777777655444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=152.25 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=108.6
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHH---cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048794 85 PSLKTYSALMVAAGKRRNIKTVMNLLEEMER---LGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYT 161 (967)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 161 (967)
....+|+++|++|++.|++++|..+|.+|.+ .|+.||+.+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3445799999999999999999999988763 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 048794 162 VLIDALCTAGRL-DQAKEIFLKMKASSHQPDQVTYITLLDKFSD 204 (967)
Q Consensus 162 ~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 204 (967)
++|.++++.|+. ++|.++|++|...|+.||..+|+.++..+.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 999999999985 7899999999999999999999988865544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=136.96 Aligned_cols=296 Identities=16% Similarity=0.067 Sum_probs=200.3
Q ss_pred HhhccHHHHHHHHHHHHHhcC-CCCCH--HHHHHHHHH--HHhcCChHHHH---------HHHHHHHHcCCCcC----Hh
Q 048794 623 CRQKKALAAKDLFVKFTENLG-VTSTL--EMYNYLIHG--LLEVHATEMGL---------DLFTTMKNAGCAPD----IS 684 (967)
Q Consensus 623 ~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~~~l~~~--~~~~~~~~~A~---------~~~~~~~~~~~~~~----~~ 684 (967)
...++.++|..+++++..... ...+. ..+..+... ..-.+....+. ..++.+.....+.+ ..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 789999999999988754332 22333 333433321 11112222222 44544433210111 11
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC----CCh
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRGCK-PN----TISHNIVISGLVKSNSIDKAMDLFYNLVSG--GFS----PTP 753 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----~~~ 753 (967)
.+...+..+...|++++|+..|+++...... ++ ..++..++.+|...|+++.|+..+.+++.. ... ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 3445667778899999999999998764211 22 346778888899999999999999888764 111 123
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCC-
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC-KPN----CVIYNILINGFGKTGDVETACELFKQMIK-----GGIRPD- 822 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~- 822 (967)
.++..++.+|...|++++|+..|+++++... .++ ..++..++.+|...|++++|+..++++++ . .|.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~ 260 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLL 260 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhH
Confidence 4677888999999999999999998875310 012 23788899999999999999999999886 3 343
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGL---DAD-TISYNFMINGLGRSGR---IEEALSLFDEMKKRGISPD-LY 894 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~ 894 (967)
..++..++.++...|++++|..+++++++... .+. ...+..+...+...|+ +.+|+..+++. +..|+ ..
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~ 337 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHH
Confidence 56788899999999999999999999885210 222 3345667777888888 77777777663 23333 36
Q ss_pred hHHHHHHHHHhcCCHHHHHHhhcCCCcCC
Q 048794 895 TYNSLILNLGRAGMVEEARKLAGGNCFVQ 923 (967)
Q Consensus 895 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 923 (967)
.+..++..+...|++++|..++++++++.
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 67788999999999999999999887543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=136.68 Aligned_cols=240 Identities=14% Similarity=0.101 Sum_probs=162.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhC------
Q 048794 646 STLEMYNYLIHGLLEVHATEMGLDLFTTMKNA-------GCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFR------ 712 (967)
Q Consensus 646 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 712 (967)
....++..++..+...|++++|+.+++++++. .......++..++..+...|++++|+.+++++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 33556677777778888888888888777763 22234556777888888889999888888887754
Q ss_pred C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC--
Q 048794 713 G-CKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSG------G-FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY-- 782 (967)
Q Consensus 713 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 782 (967)
+ .+....++..++.++...|++++|...+++++.. + .+....++..++.++...|++++|+..++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 1222456777888888899999999888888764 1 1223456788899999999999999999998764
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhC-------CCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 048794 783 ----GCKPN-CVIYNILINGFGKTGDVETACELFKQMIKG-------GIRPDL-------KSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 783 ----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~~-------~~~~~l~~~~~~~g~~~~A~ 843 (967)
+..|. ..++..++.+|...|++++|+..++++++. ...|.. ..+..++..+...+.+.+|.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 11222 347888999999999999999999998862 112221 12223344445566677777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 844 HYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
..++.+.... +....++..++.+|...|++++|.++++++++
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7887776532 33567888999999999999999999999885
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=121.76 Aligned_cols=210 Identities=10% Similarity=0.000 Sum_probs=166.9
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHH
Q 048794 681 PDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLI 760 (967)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 760 (967)
.+...+..++..+...|++++|+..|++++...++++...+..++.++...|++++|+..+++++... +....++..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678889999999999999999999999998644788888889999999999999999999999874 44567889999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDYGCKPNC-------VIYNILINGFGKTGDVETACELFKQMIKGGIRPD---LKSYSVLV 830 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 830 (967)
.+|...|++++|+..++++++.. +.+. .+|..++.++...|++++|+..|+++++ ..|+ ..++..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 99999999999999999999864 2345 4688899999999999999999999998 4676 46888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
.+|...|+ ..++++...+ ..+...+.. ......|.+++|...++++++. .|.+..+...+..+.
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l-~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLA-SSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL-SPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGT-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcc-cCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHH
Confidence 99876543 4455555542 334444433 3345677899999999999974 344456666555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-11 Score=130.98 Aligned_cols=271 Identities=13% Similarity=-0.012 Sum_probs=133.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHh----hHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-Ch----hhHHHHH
Q 048794 655 IHGLLEVHATEMGLDLFTTMKNAGCAPDIS----TYNLLLDGYGKSGRVEELLKLYEEMSFRGCKP-NT----ISHNIVI 725 (967)
Q Consensus 655 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~----~~~~~l~ 725 (967)
+..+...|++++|...+++.+......+.. ++..++..+...|++++|...++++....... +. .++..++
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334445556666666655555443211111 33444555555666666666666554421110 11 1234455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC----CHHHHHHH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSG----GFS--P-TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP----NCVIYNIL 794 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l 794 (967)
..+...|++++|...+++++.. +.+ + ....+..++.++...|++++|...+++.++..... ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 5556666666666666655543 111 1 12334455566666666666666666665432110 12345556
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 048794 795 INGFGKTGDVETACELFKQMIKGGIRPD--LKSYS----VLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISYNFMI 865 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~ 865 (967)
+.++...|++++|...++++......++ ..... ..+.++...|++++|..+++++......+ ....+..++
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 6666666666666666666554211111 11111 22334556666666666666655422111 122344556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 866 NGLGRSGRIEEALSLFDEMKKR----GISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
.++...|++++|...++++... |.+++. ..+..++.++...|++++|...+++++.+.+.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 6666666666666666665421 111111 24455566666666666666666666655443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-14 Score=125.74 Aligned_cols=144 Identities=9% Similarity=-0.064 Sum_probs=111.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 794 LINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 794 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
|+.++...|++++|++.+++... ..|+ ...+..++.+|...|++++|++.|+++++.+ +.+..++..++.+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 56677778888888888888876 3555 4567788888888899999999998888753 446778888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH-hhcCCCcCCCCcccc-ccceeeeccCCC
Q 048794 873 RIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARK-LAGGNCFVQPSEFVS-SELQVIYAENPR 941 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~-~~l~~~~~~~g~ 941 (967)
++++|+..|+++++. .|.+..++..++.++.+.|++++|.+ +++++++++|+|+.+ ..++.++...|+
T Consensus 80 ~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVEL-NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999988864 34456888888888888888877655 458889999998887 477777777764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-11 Score=131.35 Aligned_cols=233 Identities=10% Similarity=-0.013 Sum_probs=172.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-c----CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCC-C-----Chh
Q 048794 651 YNYLIHGLLEVHATEMGLDLFTTMKNAGCA-P----DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCK-P-----NTI 719 (967)
Q Consensus 651 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~ 719 (967)
+...+..+...|++++|+..|+++.+.... + ...++..++..|...|++++|+..++++...... + ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 334556677888999999888888764111 1 2346778888899999999999999888764211 1 134
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHH
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSG----GF-SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD-----YGCKPNCV 789 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 789 (967)
++..++.+|...|++++|...+.+++.. +. .....++..++.+|...|++++|+..++++++ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 6678888899999999999999888764 11 11234678889999999999999999999987 42 22356
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGG---IRPD-LKSYSVLVDCLCMVGR---VDDALHYFEELKLNGLDADTISYN 862 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~ 862 (967)
++..++.+|...|++++|+..++++++.. ..|. ...+..+...+...|+ +.+|+.++++.. ..+.....+.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~ 340 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHH
Confidence 88899999999999999999999988731 1233 3456677777778888 788888877622 1122345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.++.+|...|++++|...++++.+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999874
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=133.55 Aligned_cols=236 Identities=14% Similarity=0.047 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--C-CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHH
Q 048794 701 ELLKLYEEMSFRGCKPNTISHNIVISGLVKS--N-SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFE 777 (967)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 777 (967)
+|.++++++.+.- +++...+ . +... + ++++|...|.++ +..|...|++++|+..|+
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-K----LFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-H----HHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-h----hcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4667777777652 3322222 2 2232 2 488898888876 456888999999999999
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhc-CCHHHHHHHH
Q 048794 778 EMLDY----GCKPN-CVIYNILINGFGKTGDVETACELFKQMIKGG---IRPD--LKSYSVLVDCLCMV-GRVDDALHYF 846 (967)
Q Consensus 778 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~ 846 (967)
++.+. +.+++ ..+|+.++.+|...|++++|+..|+++++.. -.+. ..++..++.+|... |++++|+..|
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 98763 21112 3589999999999999999999999998621 0111 35788999999996 9999999999
Q ss_pred HHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HhHHHHHHHHHhcCCHHHHHHh
Q 048794 847 EELKLNGLD-AD----TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL------YTYNSLILNLGRAGMVEEARKL 915 (967)
Q Consensus 847 ~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~ 915 (967)
+++++.... .+ ..++..++.++...|++++|+..++++.+....... ..+..++.++...|++++|+..
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999863100 11 356888999999999999999999999974221111 1567889999999999999999
Q ss_pred hcCCCcCCCCcccc------ccceeeec--cCCCcccccchhhhhhcccc
Q 048794 916 AGGNCFVQPSEFVS------SELQVIYA--ENPRATSLSHKHCEYLASSC 957 (967)
Q Consensus 916 ~~~~l~~~p~~~~~------~~l~~~~~--~~g~~~~~~~~~~~~~~~~~ 957 (967)
+++++.++|+.+.. ..++..|. ..++++++...+.+.+..+|
T Consensus 222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 99999999998764 13445443 45667777775544444444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.6e-13 Score=132.42 Aligned_cols=189 Identities=9% Similarity=-0.023 Sum_probs=114.8
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---C-HHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN---CVIYNILINGFGKTGDVETACELFKQMIKGGIRP---D-LKSY 826 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~-~~~~ 826 (967)
..+..++..+.+.|++++|+..|+++++..+. + ..++..++.+|...|++++|+..|+++++. .| . ..++
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 92 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHHH
Confidence 34444555555555555555555555543211 2 334555555555555555555555555552 22 1 2344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHH-----------------HHHHHHHHHhcCCHHHHHHHH
Q 048794 827 SVLVDCLCM--------VGRVDDALHYFEELKLNGLDADTIS-----------------YNFMINGLGRSGRIEEALSLF 881 (967)
Q Consensus 827 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~ 881 (967)
..++.++.. .|++++|+..|+++++.. +.+... +..++.+|...|++++|+..|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 555555555 555555555555555421 111111 256788888888888888888
Q ss_pred HHHHHcCCCC---CHHhHHHHHHHHHhc----------CCHHHHHHhhcCCCcCCCCcccc----ccceeeeccCCCccc
Q 048794 882 DEMKKRGISP---DLYTYNSLILNLGRA----------GMVEEARKLAGGNCFVQPSEFVS----SELQVIYAENPRATS 944 (967)
Q Consensus 882 ~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~l~~~p~~~~~----~~l~~~~~~~g~~~~ 944 (967)
+++++. .|. ....+..++.++... |++++|+..++++++.+|+++.+ ..++.++...|++++
T Consensus 172 ~~~l~~-~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 172 EAVFDA-YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHH-CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 888863 222 235777888888766 88888999999998888988765 267888877777766
Q ss_pred ccc
Q 048794 945 LSH 947 (967)
Q Consensus 945 ~~~ 947 (967)
...
T Consensus 251 ~~~ 253 (261)
T 3qky_A 251 DAS 253 (261)
T ss_dssp CTT
T ss_pred hhH
Confidence 544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=9.7e-13 Score=124.65 Aligned_cols=173 Identities=14% Similarity=0.044 Sum_probs=150.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
..+..++..+...|++++|+..++++++. .| +..++..++.++...|++++|..+++++++.. +.+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 46788899999999999999999999874 44 47889999999999999999999999999753 4577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCccccc
Q 048794 868 LGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLS 946 (967)
Q Consensus 868 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~ 946 (967)
+...|++++|.+.++++.+. .+.+...+..++.++...|++++|+..++++++.+|+++.+ ..+|.+|...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999875 45677899999999999999999999999999999999887 69999999999999998
Q ss_pred chhhhhhcccccccccccc
Q 048794 947 HKHCEYLASSCTFVCPYNV 965 (967)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~ 965 (967)
..+.+.+..+|...-...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~ 183 (186)
T 3as5_A 165 PHFKKANELDEGASVELAL 183 (186)
T ss_dssp HHHHHHHHHHHCCCGGGGG
T ss_pred HHHHHHHHcCCCchhhHhh
Confidence 8555666666655544444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=124.44 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=120.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHH----------------HHHHHhccCCHHHHHHHHHHHHhCCCC
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKP-NCVIYNI----------------LINGFGKTGDVETACELFKQMIKGGIR 820 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~~~ 820 (967)
..+..+...|++++|+..|+++++. .| +...|.. ++.+|...|++++|+..|+++++ ..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~ 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KA 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HC
Confidence 3444555566666666666666553 22 2334444 88889999999999999999988 46
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHhHH
Q 048794 821 PD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGR--IEEALSLFDEMKKRGISPDLYTYN 897 (967)
Q Consensus 821 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~ 897 (967)
|+ ..++..++.++...|++++|+..|+++++.+ +.+..++..++.+|...|+ ...+...++.+.. .+|....+.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 65 6788899999999999999999999998854 4467788889988877664 4556666666642 233334566
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccc
Q 048794 898 SLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSEL 932 (967)
Q Consensus 898 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l 932 (967)
.++.++...|++++|+..++++++++|++.....|
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77888888899999999999999999986554333
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-12 Score=145.12 Aligned_cols=176 Identities=9% Similarity=-0.054 Sum_probs=141.0
Q ss_pred HcCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 048794 764 SKSGRLEEAKKLFEEML--------DYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC 834 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 834 (967)
...|++++|++.++++. +.. +.+...+..++.++...|++++|++.|+++++. .|+ ..+++.++.++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 67788899999998888 432 335668888899999999999999999998883 565 678889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 914 (967)
..|++++|+..|+++++.+ +.+...+..++.++...|++++ +..|+++++. .+.+..++..++.++.+.|++++|+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST-NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998753 3467788889999999999999 9999999874 34456888999999999999999999
Q ss_pred hhcCCCcCCCCcccc-ccceeeeccCCCcccc
Q 048794 915 LAGGNCFVQPSEFVS-SELQVIYAENPRATSL 945 (967)
Q Consensus 915 ~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~ 945 (967)
.++++++++|+++.+ +.++.+|...|+.+++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------C
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCC
Confidence 999999999999887 6888888877764443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-10 Score=124.01 Aligned_cols=301 Identities=13% Similarity=0.014 Sum_probs=211.7
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HhhH
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKFTENLGVTSTL----EMYNYLIHGLLEVHATEMGLDLFTTMKNAGCA-PD----ISTY 686 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~ 686 (967)
..++..+...|++++|...+++.+...+ ..+. .++..++..+...|++++|...+++....... .+ ..++
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4556778889999999999999876543 2222 25667778888999999999999988764211 11 2335
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCC----CC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CChhc
Q 048794 687 NLLLDGYGKSGRVEELLKLYEEMSFRG----CK--PN-TISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS----PTPCT 755 (967)
Q Consensus 687 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~ 755 (967)
..++..+...|++++|...++++.... .+ |. ...+..++.++...|++++|...+++.+..... .....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 678888999999999999999987642 11 21 235566888899999999999999998875221 12345
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHH-----HHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP-NCVIYN-----ILINGFGKTGDVETACELFKQMIKGGIRPD---LKSY 826 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~ 826 (967)
+..++.++...|++++|...++++......+ ....+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 7788899999999999999999987531121 111222 233457789999999999999876422111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKL----NGLDADT-ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLIL 901 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 901 (967)
..++.++...|++++|...+++++. .+..+.. .++..++.++...|++++|...+++++... + .. ....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-~-~~----g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA-N-RT----GFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-H-HH----CCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-c-cc----cHHH
Confidence 7889999999999999999999874 2211122 367778999999999999999999987421 1 00 0112
Q ss_pred HHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 902 NLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 902 ~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
.+...| +....++++.+...|-
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHcc--HHHHHHHHHHHhCCCC
Confidence 233333 4555666666666664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-11 Score=127.00 Aligned_cols=227 Identities=18% Similarity=0.144 Sum_probs=131.0
Q ss_pred HccCChHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCChhcHHHH
Q 048794 694 GKSGRVEELLKLYEEMSFR-------GCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSG------G-FSPTPCTYGPL 759 (967)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l 759 (967)
...|++++|+.+|++++.. +.+....++..++.++...|++++|+..+++++.. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4556777777776666542 11223446677777777788888888877777654 1 12233566777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCCC-HHH
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDY-----GC-KP-NCVIYNILINGFGKTGDVETACELFKQMIKG------GIRPD-LKS 825 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~-~~~ 825 (967)
+.+|...|++++|+..++++++. +. .| ...++..++.+|...|++++|+..++++++. +..|. ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77777777777777777777653 00 12 2336777777777777777777777777652 11333 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCC
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLN-------GLDA-DTISYNFMINGLGRSGR------IEEALSLFDEMKKRGISP 891 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~ 891 (967)
+..++.++...|++++|..+++++++. ...+ ....+..+...+...+. +.++...++.... ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCH
Confidence 667777777777777777777777642 1112 22233434444433332 2222222222110 111
Q ss_pred C-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 892 D-LYTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 892 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
+ ..++..++.++...|++++|+.+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 255667777777777777777777776654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.9e-11 Score=117.57 Aligned_cols=215 Identities=8% Similarity=-0.034 Sum_probs=132.2
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhc
Q 048794 681 PDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPN---TISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS--PTPCT 755 (967)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~ 755 (967)
.+...+..++..+.+.|++++|+..|++++... +.+ ..++..++.+|...|++++|+..|++++...+. ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355666677777777777777777777777653 222 345666666677777777777777776665221 12344
Q ss_pred HHHHHHHHHc--------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048794 756 YGPLIDGLSK--------SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYS 827 (967)
Q Consensus 756 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 827 (967)
+..++.++.. .|++++|+..|+++++..+. +...+..+... ..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHH
Confidence 5566666666 66666666666666664211 21122111111 000000 011247
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCH--
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMINGLGRS----------GRIEEALSLFDEMKKRGISPDL-- 893 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~-- 893 (967)
.++.+|...|++++|+..|+++++..... ...++..++.+|... |++++|...++++++. .|.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~ 231 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-FPDSPLL 231 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-CTTCTHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-CCCChHH
Confidence 78899999999999999999988642111 345788888888866 8899999999999864 33332
Q ss_pred -HhHHHHHHHHHhcCCHHHHHHhh
Q 048794 894 -YTYNSLILNLGRAGMVEEARKLA 916 (967)
Q Consensus 894 -~~~~~l~~~~~~~g~~~~A~~~~ 916 (967)
.....+..++...|+++++..+.
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHh
Confidence 34455666666667766655443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-10 Score=113.92 Aligned_cols=190 Identities=9% Similarity=-0.032 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 048794 719 ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSP--TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC--VIYNIL 794 (967)
Q Consensus 719 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l 794 (967)
..+...+..+...|++++|+..|++++...+.. ....+..++.+|.+.|++++|+..|+++++..+.... .++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 345556666667777777777777766643221 1245666667777777777777777777664322111 145555
Q ss_pred HHHHhc------------------cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048794 795 INGFGK------------------TGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEELKLNGLD 855 (967)
Q Consensus 795 ~~~~~~------------------~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 855 (967)
+.++.. .|++++|+..|+++++. .|+. .+...+..+.. +...
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----------~~~~------- 145 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----------LKDR------- 145 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----------HHHH-------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----------HHHH-------
Confidence 555543 33445555555555442 3331 11111000000 0000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 856 ADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL---YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 856 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.......++..|...|++++|+..|+++++. .|.++ .++..++.++.+.|++++|++.++++....|++...
T Consensus 146 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 146 -LAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0011245788889999999999999999864 33333 568889999999999999999999998888888876
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=106.16 Aligned_cols=114 Identities=16% Similarity=0.066 Sum_probs=88.3
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 048794 819 IRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYN 897 (967)
Q Consensus 819 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 897 (967)
+.|+ ...+..+|..|.+.|++++|++.|+++++.+ +.+..++..++.+|...|++++|+..++++++. -+.+..+|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL-DSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-hhhhhHHHH
Confidence 5666 3677788888888888888888888888753 446777888888888888888888888888864 344567888
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-cccee
Q 048794 898 SLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQV 934 (967)
Q Consensus 898 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~ 934 (967)
.++.++...|++++|++.++++++++|+|+.+ ..|+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 88888888888888888888888888888876 34443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=7.1e-11 Score=120.59 Aligned_cols=227 Identities=15% Similarity=0.073 Sum_probs=160.5
Q ss_pred hcCChHHHHHHHHHHHHc-------CCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhC------CC-CCChhhHHHHH
Q 048794 660 EVHATEMGLDLFTTMKNA-------GCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFR------GC-KPNTISHNIVI 725 (967)
Q Consensus 660 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~ 725 (967)
..|++++|+..|++.++. ..+....++..++..+...|++++|+.+|+++... +. +....++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666666655542 22234667888999999999999999999998864 11 22345788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC------C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CHHHH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSG------G-FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY------GCKP-NCVIY 791 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~ 791 (967)
.++...|++++|...+++++.. . .+....++..++.+|...|++++|+..++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998875 1 1234567889999999999999999999999874 1122 24478
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH--HC---CCCCCH
Q 048794 792 NILINGFGKTGDVETACELFKQMIKG-------GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELK--LN---GLDADT 858 (967)
Q Consensus 792 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~ 858 (967)
..++.+|...|++++|+..++++++. ...|. ...+..+...+...+....+..+..... .. ..+...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 89999999999999999999999862 12333 2344555555554444333333222111 11 111234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 859 ISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.++..++.+|...|++++|..+++++++
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5788899999999999999999999874
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-11 Score=110.08 Aligned_cols=144 Identities=9% Similarity=-0.040 Sum_probs=89.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 048794 759 LIDGLSKSGRLEEAKKLFEEMLDYGCKPN-CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMV 836 (967)
Q Consensus 759 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 836 (967)
|+.++...|++++|+..++++... .|+ ...+..++.+|.+.|++++|++.|+++++ ..|+ ..++..++.+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 455566666777777777766653 222 23556677777777777777777777776 3554 56677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 048794 837 GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL-FDEMKKRGISPDLYTYNSLILNLGRAGM 908 (967)
Q Consensus 837 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 908 (967)
|++++|+..|+++++.+ +.++.++..++.+|.+.|++++|.+. ++++++. .|.++.++...+..+...|+
T Consensus 79 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-STTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCc
Confidence 77777777777777642 33566677777777777777665554 4666653 23344666666666666553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=112.36 Aligned_cols=192 Identities=9% Similarity=0.017 Sum_probs=133.9
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT-ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLI 760 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 760 (967)
+...+...+..+...|++++|+..|++++... |+. ..+... ..... ..........++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg 61 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKN--------------SEISSKLATELA 61 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcch--------------hhhhHHHHHHHH
Confidence 34455566777788888888888888887763 222 222110 00000 011112334588
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC-
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGR- 838 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~- 838 (967)
.+|.+.|++++|+..|+++++.. +.+...+..++.++...|++++|+..|+++++ ..|+ ..++..++.+|...|+
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHH
Confidence 89999999999999999999864 33677999999999999999999999999998 4676 6889999998876654
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048794 839 -VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLIL 901 (967)
Q Consensus 839 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 901 (967)
.+++...++++.. .+|....+..++.++...|++++|+..|+++++ +.|+......+..
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 4556677766653 233334556678888889999999999999985 6788766555444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.6e-11 Score=134.61 Aligned_cols=172 Identities=12% Similarity=-0.019 Sum_probs=101.5
Q ss_pred HccCChHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 048794 694 GKSGRVEELLKLYEEMS--------FRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK 765 (967)
Q Consensus 694 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 765 (967)
...|++++|++.++++. ... +.+...+..++.++...|++++|+..|+++++.+ +.+...+..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55677777777777766 332 3344456666666666666666666666666542 3344556666666666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048794 766 SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 844 (967)
.|++++|+..|+++++.. +.+...|..++.++.+.|++++ ++.|+++++ ..|+ ..++..++.++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666643 2244566666666666666666 666666666 3443 4566666666666666666666
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 048794 845 YFEELKLNGLDA-DTISYNFMINGLGRSGR 873 (967)
Q Consensus 845 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 873 (967)
.|+++++. .| ...++..++.++...|+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 66666653 33 34455556666555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-10 Score=110.55 Aligned_cols=186 Identities=14% Similarity=0.078 Sum_probs=117.7
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048794 737 AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK-PNCVIYNILINGFGKTGDVETACELFKQMI 815 (967)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 815 (967)
|+..+++.+..+ +++..++..++.++...|++++|++++.+.+..+.. -+...+..++.++.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666543 333444556777777778888888888777665421 234466677777778888888888888877
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 816 KGGIRP-----DLKSYSVLVDC--LCMVG--RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 816 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+ ..| +..+...|+.+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 356 24444445433 44444 777888888887653 34422222222367778888888888776553
Q ss_pred c-----C----CCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 887 R-----G----ISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 887 ~-----~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
. . -+.++.++..++.+....|+ +|.++++++.+.+|+||..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1 0 03344666666666666676 7778888888888888773
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-10 Score=100.92 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=81.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
.|..++..+...|++++|+..++++++.+ +.+...+..++.++...|++++|..+++++...+ +.+...+..++.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555666666666666666666666531 2234556666666666666666666666666532 334555666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 870 RSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 870 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
..|++++|.+.++++.+. .+.+...+..++.++...|++++|..++++++..+|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 666677776666666653 2334566666666666667777777777666666665
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-09 Score=104.17 Aligned_cols=174 Identities=14% Similarity=0.058 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC----CHHHHHHHH
Q 048794 701 ELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG----RLEEAKKLF 776 (967)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 776 (967)
+|+.+|+++.+.| +..++..++..|...+++++|+.+|+++.+.+ ++..+..++..|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555666666543 55566666666666666677777666666643 34456666666666 5 677777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHH
Q 048794 777 EEMLDYGCKPNCVIYNILINGFGK----TGDVETACELFKQMIKGGIRPD---LKSYSVLVDCLCM----VGRVDDALHY 845 (967)
Q Consensus 777 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~ 845 (967)
+++.+. .+...+..++.+|.. .+++++|+..|+++.+. .|+ ..+++.|+.+|.. .+++++|+.+
T Consensus 77 ~~A~~~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEA---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHT---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHC---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 777664 256677777777766 66777777777777764 232 5677777777776 6677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 048794 846 FEELKLNGLDADTISYNFMINGLGRS-G-----RIEEALSLFDEMKKRG 888 (967)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 888 (967)
|+++.+. ++++..+..|+.+|... | ++++|..+|+++.+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7777764 23444566677776543 2 6777777777777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.3e-11 Score=115.16 Aligned_cols=188 Identities=12% Similarity=0.000 Sum_probs=122.7
Q ss_pred hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH----HHH
Q 048794 753 PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN--CVIYNILINGFGKTGDVETACELFKQMIKGGIRPDL----KSY 826 (967)
Q Consensus 753 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~ 826 (967)
...+..++..+.+.|++++|+..|+++++..+... ...+..++.+|.+.|++++|+..|+++++. .|+. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34566677888888888888888888887532211 247778888888888888888888888873 4442 366
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-H-----------
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-Y----------- 894 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~----------- 894 (967)
..++.++...|.. . ...+..++..+...|++++|+..|+++++. .|+. .
T Consensus 82 ~~~g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHH
Confidence 7777777653210 0 000111222233344455555555554431 2221 1
Q ss_pred ------hHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc---c-ccceeeeccCCCcccccchhhhhhcccccccc
Q 048794 895 ------TYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV---S-SELQVIYAENPRATSLSHKHCEYLASSCTFVC 961 (967)
Q Consensus 895 ------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~-~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 961 (967)
....++..+.+.|++++|+..++++++..|+++. + ..++.+|.+.|++++|...........|+.+-
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1245788899999999999999999999999974 3 58999999999999998855554555555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=119.40 Aligned_cols=158 Identities=11% Similarity=-0.007 Sum_probs=74.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC----C-CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 048794 727 GLVKSNSIDKAMDLFYNLVSGGF----S-PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC---KPN--CVIYNILIN 796 (967)
Q Consensus 727 ~~~~~~~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~ 796 (967)
.|...|++++|...|.+++.... + ....++..++.+|...|++++|+..|+++++... .+. ..++..++.
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555666666666655554310 0 0123445555555555566666655555543200 011 124555555
Q ss_pred HHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 048794 797 GFGKTGDVETACELFKQMIKG----GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDAD-TISYNFMIN 866 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~ 866 (967)
+|.. |++++|+..|+++++. +..+. ..++..++.+|...|++++|+..|+++++. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5555 5555555555555441 00000 234455555555555555555555555531 10000 123444445
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048794 867 GLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~ 885 (967)
++...|++++|...+++++
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 5555555555555555554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-10 Score=129.12 Aligned_cols=150 Identities=11% Similarity=-0.050 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELF 811 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 811 (967)
|++++|+..++++++.. +.+...+..++..|...|++++|++.|+++++.. +.+...+..++.+|...|++++|++.|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555666665555542 2334455555555656666666666666655542 123445555555555566666666666
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 048794 812 KQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS---GRIEEALSLFDEMKK 886 (967)
Q Consensus 812 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 886 (967)
+++++. .|+ ...+..++.++...|++++|.+.++++++.+ +.+...+..++.++... |++++|.+.++++++
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 665552 333 4555555666666666666666666555532 22444555555555555 566666666665554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-11 Score=122.25 Aligned_cols=159 Identities=16% Similarity=0.080 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISY-NFMIN 866 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 866 (967)
..+..++..+...|++++|+..|++++. ..|+ ..++..++.++...|++++|...++++... .|+.... ...+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 3455555555555555555555555555 2343 445555555555555555555555555442 2332222 22222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc--ccc-ccceeeeccCCCcc
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE--FVS-SELQVIYAENPRAT 943 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~-~~l~~~~~~~g~~~ 943 (967)
.+...|+.++|+..++++++. .|.+...+..++.++...|++++|+..++++++.+|++ ..+ ..|+.+|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 344555555555555555543 23334555555555555556666666666555555555 333 35555555555555
Q ss_pred cccchhhhh
Q 048794 944 SLSHKHCEY 952 (967)
Q Consensus 944 ~~~~~~~~~ 952 (967)
++...+.+.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 555533333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-09 Score=102.27 Aligned_cols=176 Identities=15% Similarity=0.048 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----CHHHHHHHH
Q 048794 666 MGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSN----SIDKAMDLF 741 (967)
Q Consensus 666 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~ 741 (967)
+|+..|++..+. -+..++..++..|...+++++|+.+|+++...+ +..++..++..|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 466777777775 367778888888888899999999999988764 56777778888777 6 899999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhc----cCCHHHHHHHHH
Q 048794 742 YNLVSGGFSPTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCK-PNCVIYNILINGFGK----TGDVETACELFK 812 (967)
Q Consensus 742 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 812 (967)
+++...+ ++.++..++.+|.. .+++++|+..|+++.+.+.. .....+..|+.+|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9988753 45577888888887 88999999999999986421 016788899999987 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 048794 813 QMIKGGIRPDLKSYSVLVDCLCMV-G-----RVDDALHYFEELKLNG 853 (967)
Q Consensus 813 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 853 (967)
+..+. .++..+++.|+.+|... | ++++|..+|+++.+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99884 34556788899988753 3 8999999999999865
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-08 Score=100.71 Aligned_cols=221 Identities=9% Similarity=0.030 Sum_probs=143.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHH----Hhc--
Q 048794 660 EVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG--RVEELLKLYEEMSFRGCKPNTISHNIVISGL----VKS-- 731 (967)
Q Consensus 660 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 731 (967)
+....++|+..+..++..++ ....+|+....++...| +++++++++..++..+ +.+..+|+.-..++ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 33445688899988888752 35667888888888888 8999999999888875 34566676666555 444
Q ss_pred -CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----
Q 048794 732 -NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLE--EAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD----- 803 (967)
Q Consensus 732 -~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 803 (967)
+++++++..++++++.+ +.+-.+|.....++.+.|.++ ++++.++++++..+ .+..+|+.-..++...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 56677777777777653 334455666666666666666 77777777776543 255666666666655554
Q ss_pred -HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 804 -VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDD-ALHYFEELKLNG--LDADTISYNFMINGLGRSGRIEEAL 878 (967)
Q Consensus 804 -~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 878 (967)
++++++.+++++.. .|+ ..+|+.+..++.+.|+..+ +..+..++++.+ -..++.++..++++|.+.|+.++|.
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 66777777776663 443 5667777777766666333 334555444321 1225556666777777777777777
Q ss_pred HHHHHHHH
Q 048794 879 SLFDEMKK 886 (967)
Q Consensus 879 ~~~~~~~~ 886 (967)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.11 E-value=9.7e-09 Score=101.31 Aligned_cols=248 Identities=11% Similarity=0.029 Sum_probs=173.1
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 048794 619 IKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGR 698 (967)
Q Consensus 619 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 698 (967)
++-.+-.|++..+..-..++ ...........+.+.+...|++... ....|...++..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~----~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF----SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS----SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhc----CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 45566788888887744332 2233344555566777777777642 12234444444444333 322
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhcHHHHHHHHHcCCCHHHHHHHHH
Q 048794 699 VEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGF-SPTPCTYGPLIDGLSKSGRLEEAKKLFE 777 (967)
Q Consensus 699 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 777 (967)
|+..+++....+ +++..++..++.++...|++++|++++.+.+..+. ......+...+.++.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 788888888764 45666677888999999999999999999987653 2455678888999999999999999999
Q ss_pred HHHHCCCCC-----CHHHHHHHHHH--HhccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 778 EMLDYGCKP-----NCVIYNILING--FGKTG--DVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 778 ~~~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
++.+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+..+...+..++.+.|++++|...++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99885 55 23444555444 44344 899999999999874 56633333333388999999999999997
Q ss_pred HHHC-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 849 LKLN-----GL----DADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 849 ~~~~-----~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
+.+. +. +.++.++.+++.+....|+ +|.++++++.+ ..|+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 6642 00 3366777677777777887 89999999997 44554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-09 Score=104.78 Aligned_cols=227 Identities=10% Similarity=-0.016 Sum_probs=174.9
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhcHHHHHHHH----HcC---C
Q 048794 697 GRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSN--SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGL----SKS---G 767 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 767 (967)
...++|++++..++..+ +.+..+|+.-..++...+ ++++++..++.++..+ +....+|+....++ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 44468999999999875 445667888888888888 8999999999998874 33344565555555 455 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC------
Q 048794 768 RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVE--TACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGR------ 838 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------ 838 (967)
++++++.+++++++.. +.+..+|+.-..++...|.++ ++++.++++++. .| |..+|+..+.++...|+
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 8899999999998875 347788888888888888888 999999999884 45 46888888888888777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHHHHHHh
Q 048794 839 VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEE-ALSLFDEMKKRG--ISPDLYTYNSLILNLGRAGMVEEARKL 915 (967)
Q Consensus 839 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 915 (967)
++++++++++++..+ +.+..+|+.+..++.+.|+..+ +.....++.+.+ -+.++.++..++.++.+.|+.++|++.
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 889999999988764 4577788888888888887444 445666555321 134567888888899889999999999
Q ss_pred hcCCCc-CCCCcccc
Q 048794 916 AGGNCF-VQPSEFVS 929 (967)
Q Consensus 916 ~~~~l~-~~p~~~~~ 929 (967)
++++.+ .||-....
T Consensus 281 ~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 281 YDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHHHHTTCGGGHHH
T ss_pred HHHHHhccChHHHHH
Confidence 999886 78887664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.5e-11 Score=112.13 Aligned_cols=160 Identities=14% Similarity=0.016 Sum_probs=100.9
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCL- 833 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~- 833 (967)
.+...+..+...|++++|+..|+++++.. +.+...+..++.++...|++++|+..+++++.. .|+......++.+.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHH
Confidence 45566777777777777777777776542 225567777777777777777777777777653 34433333333221
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHH
Q 048794 834 CMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD---LYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 910 (967)
...+...+|+..++++++.+ +.+...+..++.++...|++++|...++++++. .|+ ...+..++.++...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCCC
Confidence 22233344677777776642 335666777777777777777777777777643 332 346667777777777777
Q ss_pred HHHHhhcCCC
Q 048794 911 EARKLAGGNC 920 (967)
Q Consensus 911 ~A~~~~~~~l 920 (967)
+|...+++++
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777776554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-10 Score=106.31 Aligned_cols=161 Identities=15% Similarity=0.098 Sum_probs=99.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILING-F 798 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 798 (967)
.+...+..+...|++++|+..|++++... +.+...+..++.++...|++++|+..++++.... |+...+..++.. +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 45556666777777777777777766542 3345566667777777777777777777766542 244333332222 1
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 048794 799 GKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA-DTISYNFMINGLGRSGRIEE 876 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 876 (967)
...+...+|+..++++++ ..|+ ...+..++.++...|++++|...|+++++.+..+ +...+..++.++...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 222233346777777766 3454 5667777777777777777777777777643222 24466667777777777777
Q ss_pred HHHHHHHHH
Q 048794 877 ALSLFDEMK 885 (967)
Q Consensus 877 A~~~~~~~~ 885 (967)
|...|++++
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-10 Score=101.32 Aligned_cols=102 Identities=11% Similarity=-0.107 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
..++.++.++...|++++|+..|++++..+ +.++..|..++.+|...|++++|+..|+++++. .|.++..|..++.++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-GKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CCCCcHHHHHHHHHH
Confidence 455555555566666666666666655532 234555555666666666666666666665543 222335555666666
Q ss_pred HhcCCHHHHHHhhcCCCcCCCCcc
Q 048794 904 GRAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 904 ~~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
...|++++|+..+++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 666666666666666666655554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=112.74 Aligned_cols=159 Identities=9% Similarity=-0.034 Sum_probs=88.8
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CC--ChhcHHHHH
Q 048794 691 DGYGKSGRVEELLKLYEEMSFRGCKP-N----TISHNIVISGLVKSNSIDKAMDLFYNLVSGG--F-SP--TPCTYGPLI 760 (967)
Q Consensus 691 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~--~~~~~~~l~ 760 (967)
..|...|++++|+..|.++....... + ..++..++.+|...|++++|+..|++++... . .+ ...++..++
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556667777766666655431110 1 2245566666666677777777666665431 0 11 123455666
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDYGCKP-N----CVIYNILINGFGKTGDVETACELFKQMIKG----GIRPD-LKSYSVLV 830 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~ 830 (967)
.+|.. |++++|+..|+++++..... + ..++..++.+|...|++++|+..|+++++. +..+. ..++..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 66666 77777777777666531111 1 235666666666677777777777766652 11111 12445556
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 048794 831 DCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~ 850 (967)
.++...|++++|...|++++
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 66666677777777776666
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-10 Score=132.39 Aligned_cols=163 Identities=10% Similarity=0.033 Sum_probs=129.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048794 766 SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 844 (967)
.|++++|++.|+++++.. +.+...|..++.++...|++++|++.|+++++. .|+ ..++..++.+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478999999999999863 336779999999999999999999999999984 565 7889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCHHHHHHhhcCCCc
Q 048794 845 YFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA---GMVEEARKLAGGNCF 921 (967)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~l~ 921 (967)
.++++++.+ +.+...+..++.+|...|++++|.+.++++++. .+.+...+..++.++... |++++|.+.++++++
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999999864 446788999999999999999999999999975 445668999999999999 999999999999999
Q ss_pred CCCCcccc-ccce
Q 048794 922 VQPSEFVS-SELQ 933 (967)
Q Consensus 922 ~~p~~~~~-~~l~ 933 (967)
.+|++... ..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 99999887 4555
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-09 Score=104.44 Aligned_cols=150 Identities=10% Similarity=0.007 Sum_probs=108.4
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCL 833 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 833 (967)
.+..++..+...|++++|+..|+++. .|+..+|..++.+|...|++++|+..|+++++. .|+ ..++..++.++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 45567777888888888888888774 457778888888888888888888888888773 444 67778888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 048794 834 CMVGRVDDALHYFEELKLNGLDADT----------------ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYN 897 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 897 (967)
...|++++|+..|+++++.. +.+. .++..++.++...|++++|...++++++ +.|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~---- 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP---- 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG----
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc----
Confidence 88888888888888887643 2222 5677788888888888888888888875 44544
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCCcCCC
Q 048794 898 SLILNLGRAGMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 898 ~l~~~~~~~g~~~~A~~~~~~~l~~~p 924 (967)
..+..++|...+++.....|
T Consensus 155 -------~~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 155 -------RHSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp -------GGGHHHHHHHHHHTTCCCCC
T ss_pred -------ccchHHHHHHHHHhcccccc
Confidence 23456666666665544443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=8e-10 Score=112.12 Aligned_cols=162 Identities=14% Similarity=0.009 Sum_probs=87.4
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKS-YSVLVDC 832 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~ 832 (967)
..+..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|+..++++.. ..|+... ....+..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHHH
Confidence 344555555566666666666666665542 12444555666666666666666666666554 2444322 2222333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHH
Q 048794 833 LCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD--LYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 833 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 910 (967)
+...++.++|+..+++++..+ +.+...+..++.++...|++++|+..++++++. -|.+ ..++..++.++...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~-~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX-DLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-ccccccchHHHHHHHHHHHcCCCC
Confidence 445555555666666655532 334555556666666666666666666666542 1111 345556666666666666
Q ss_pred HHHHhhcCCC
Q 048794 911 EARKLAGGNC 920 (967)
Q Consensus 911 ~A~~~~~~~l 920 (967)
+|...+++++
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-10 Score=101.98 Aligned_cols=116 Identities=14% Similarity=-0.052 Sum_probs=76.8
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048794 810 LFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG 888 (967)
Q Consensus 810 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 888 (967)
.|++++. ..|+ ...+..++..+...|++++|+..|++++..+ +.+...+..++.++...|++++|+..|+++++.
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l- 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM- 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 3444444 3454 3566667777777777777777777776643 335666667777777777777777777777653
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 889 ISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 889 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.|.+...+..++.++...|++++|+..++++++++|++|..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 23345667777777777777777777777777777776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-09 Score=91.64 Aligned_cols=109 Identities=16% Similarity=0.059 Sum_probs=77.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
.+...+..|.+.|++++|+..|+++++ ..|+ ..++..++.+|...|++++|+..++++++.+ +.+..+|..++.++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 666777777777788888888877777 3454 5677777777777888888888888777653 34566777778888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
...|++++|++.|+++++. .|.+..++..++.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l-~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV-DPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH-CcCCHHHHHHHHHh
Confidence 8888888888888877763 23344666555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.1e-09 Score=91.96 Aligned_cols=129 Identities=17% Similarity=0.282 Sum_probs=100.2
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLC 834 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 834 (967)
.+..++..+...|++++|+.+++++.+.. +.+...+..++..+...|++++|+..++++.+.+ +.+...+..++.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45667778888888888888888887753 3356677888888888888888888888887742 234667778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
..|++++|..+++++.+.. +.+..++..++.++...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 8888888888888888653 44567777888888888888888888888875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.9e-10 Score=113.22 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=125.6
Q ss_pred ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 048794 752 TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLV 830 (967)
Q Consensus 752 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 830 (967)
+...+..++..+...|++++|+..|+++++.. +.+...|..++.+|...|++++|+..++++++ ..|+ ...++.++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 34566778888888899999999999888763 23677888888888899999999999999887 4565 67888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMV 909 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 909 (967)
.++...|++++|...|+++++.+ | +...+...++...+. .++.... .......+.+..+...++..+ .|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~i~~~l~~l~--~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRWN-SIEERRIHQESELHSYLTRLI--AAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHHH-HHHHTCCCCCCHHHHHHHHHH--HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHHH-HHHHHHHhhhHHHHHHHHHHH--HHHH
Confidence 99999999999999998887532 2 110111111121111 1112211 122223555666666665543 6889
Q ss_pred HHHHHhhcCCCcCCCCcccc-ccceeeeccC-CCcccccc
Q 048794 910 EEARKLAGGNCFVQPSEFVS-SELQVIYAEN-PRATSLSH 947 (967)
Q Consensus 910 ~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~-g~~~~~~~ 947 (967)
++|++.++++++++|++... ..++.++.+. ++++++..
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~ 191 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776 4666666665 55555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-08 Score=98.03 Aligned_cols=133 Identities=8% Similarity=-0.061 Sum_probs=98.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
.+..++..+...|++++|+..|++++ .|+..++..++.++...|++++|+..++++++.+ +.+..++..++.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566777777788888888887763 4566777788888888888888888888877643 445667777888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH----------------HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 870 RSGRIEEALSLFDEMKKRGISPDL----------------YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 870 ~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
..|++++|+..++++++. .+.+. .++..++.++...|++++|+..++++++++|++..
T Consensus 83 ~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HTTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HcccHHHHHHHHHHHHHh-CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 888888888888887763 22222 67777888888888888888888888888887654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-09 Score=104.89 Aligned_cols=136 Identities=11% Similarity=-0.098 Sum_probs=86.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMING 867 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 867 (967)
.+..++.++...|++++|.++|+.+... .|+....+.++.++.+.|++++|+..|+++.... .| ...++..++.+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 3444566666777777777777766652 4543366666677777777777777776554421 11 12356667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 868 LGRSGRIEEALSLFDEMKKRGISPD--LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 868 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+...|++++|++.|+++......|. ...+..++.++.+.|+.++|...+++++..+|+ +.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 7777777777777777764222143 256667777777777777777777777777777 443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.8e-09 Score=100.96 Aligned_cols=204 Identities=9% Similarity=-0.050 Sum_probs=145.2
Q ss_pred ccCChHHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCC-----C------------
Q 048794 695 KSGRVEELLKLYEEMSFRGCKPNTISHNIV-------ISGLVKSNSIDKAMDLFYNLVSGGF-----S------------ 750 (967)
Q Consensus 695 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~-----~------------ 750 (967)
..++..+|.+.|.++.... +.....|..+ ..++...+...+++..+.+.+...+ .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777664 3345566666 4555555555666666666555210 0
Q ss_pred ---CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHH
Q 048794 751 ---PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKS 825 (967)
Q Consensus 751 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~ 825 (967)
........++.++...|++++|.++|+.+... .|+......++..+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 00123445678889999999999999998875 3544477778888999999999999999776521 121 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
++.++.++...|++++|+..|+++......| .......++.++.+.|+.++|...|+++.. ..|+..++..|...-
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~aL~~~~ 251 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAALKDPS 251 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHHHhCCC
Confidence 8899999999999999999999998643325 345778899999999999999999999996 355555555554433
Q ss_pred H
Q 048794 904 G 904 (967)
Q Consensus 904 ~ 904 (967)
+
T Consensus 252 ~ 252 (282)
T 4f3v_A 252 Y 252 (282)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=95.41 Aligned_cols=113 Identities=12% Similarity=-0.060 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
..+..++.++...|++++|...++++++.. +.+..++..++.++...|++++|...++++++. .+.+...+..++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 344444555555555555555555554432 223444444555555555555555555555432 222334455555555
Q ss_pred HhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeecc
Q 048794 904 GRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAE 938 (967)
Q Consensus 904 ~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~ 938 (967)
...|++++|++.++++++++|+++.+ ..++.+|..
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 55555555555555555555555444 344444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=97.16 Aligned_cols=108 Identities=15% Similarity=-0.035 Sum_probs=70.4
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 048794 820 RPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNS 898 (967)
Q Consensus 820 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 898 (967)
.|+ ...+..++..+...|++++|+..|++++..+ +.+...+..++.++...|++++|+..|+++++. .|.++..+..
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~ 91 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM-DINEPRFPFH 91 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHH
Confidence 443 3455666666777777777777777766543 335566666777777777777777777777653 2334466667
Q ss_pred HHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 899 LILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 899 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++.++...|++++|+..++++++++|+++..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 7777777777777777777777777766654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-07 Score=95.44 Aligned_cols=161 Identities=14% Similarity=0.049 Sum_probs=92.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCh----hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 048794 725 ISGLVKSNSIDKAMDLFYNLVSGGF-SPTP----CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK-PN----CVIYNIL 794 (967)
Q Consensus 725 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 794 (967)
+..+...|++++|...++++..... .++. ..+..++..+...|++++|+..++++++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666777777777777665421 1111 12224555666666777777777777653211 12 1256667
Q ss_pred HHHHhccCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHH
Q 048794 795 INGFGKTGDVETACELFKQMIK----G-GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL----NGLDA-DTISYNF 863 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~ 863 (967)
+.+|...|++++|+..|+++++ . +..|. ..++..++.+|...|++++|+.+++++++ .+..+ -..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777777663 1 11122 23566667777777777777777776653 11111 1456666
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHH
Q 048794 864 MINGLGRSG-RIEEALSLFDEMK 885 (967)
Q Consensus 864 l~~~~~~~g-~~~~A~~~~~~~~ 885 (967)
++.+|...| .+++|.+.+++++
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 777777777 3577777776665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=8.7e-11 Score=122.11 Aligned_cols=157 Identities=15% Similarity=0.009 Sum_probs=119.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----------------HHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD----------------LKSYS 827 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----------------~~~~~ 827 (967)
..+++++|+..++...+. .| +...+..++..+...|++++|+..|+++++. .|+ ..++.
T Consensus 125 ~L~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHH
Confidence 456677788777776653 23 4457888888888999999999999998883 444 37788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG 907 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 907 (967)
.++.+|.+.|++++|+..++++++.+ +.+..++..++.+|...|++++|+..|+++++. .|.+..++..++.++...|
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 88888888888888888888888753 446778888888888888888888888888864 3445678888888888888
Q ss_pred CHHHH-HHhhcCCCcCCCCcc
Q 048794 908 MVEEA-RKLAGGNCFVQPSEF 927 (967)
Q Consensus 908 ~~~~A-~~~~~~~l~~~p~~~ 927 (967)
++++| ...+++++..-+.++
T Consensus 279 ~~~~a~~~~~~~~~~~~~~~~ 299 (336)
T 1p5q_A 279 RQLAREKKLYANMFERLAEEE 299 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcc
Confidence 88888 556777665544433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-09 Score=93.15 Aligned_cols=115 Identities=14% Similarity=0.058 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
.+..++..+...|++++|+..|+++++. .| +...+..++.++...|++++|...++++++.. +.+...+..++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 4444555555555555555555555442 22 23444555555555555555555555555432 22344444555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGM 908 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 908 (967)
...|++++|...++++.+. .+.+...+..++.++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL-DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHhc
Confidence 5555555555555555432 22233444444444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-07 Score=95.59 Aligned_cols=220 Identities=11% Similarity=0.058 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC--C
Q 048794 701 ELLKLYEEMSFRGCKPNTISHNIVISGLVKSNS----------IDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG--R 768 (967)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 768 (967)
+|++++..++..+ |.+..+|+.-..++...+. +++++..++.++..+ +.+..+|.....++...| .
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 5666666666553 2233444444433333222 466777777777653 444556666666666666 4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc----------
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD-VETACELFKQMIKGGIRP-DLKSYSVLVDCLCMV---------- 836 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---------- 836 (967)
+++++.+++++++.. +.+..+|+.-..++...|. ++++++.++++++. .| |..+|+..+.++...
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 788888888888764 3377788877777777777 58888888888874 45 467888877777665
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCH-HhHHHHH
Q 048794 837 ----GRVDDALHYFEELKLNGLDADTISYNFMINGLGRS-----------GRIEEALSLFDEMKKRGISPDL-YTYNSLI 900 (967)
Q Consensus 837 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 900 (967)
+.++++++++++++..+ +.+..+|+.+..++... +.++++++.++++++ +.|+. .++.+++
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~ 279 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKWCLLTII 279 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHH
Confidence 45788888888888753 44677777777776655 468899999999886 44554 3333333
Q ss_pred HHH---HhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 901 LNL---GRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 901 ~~~---~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
... ...|..++...++.++.++||-...
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~ 310 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKAVDPMRAA 310 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence 221 2357888899999999999997655
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-06 Score=93.37 Aligned_cols=201 Identities=14% Similarity=-0.012 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 666 MGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLV 745 (967)
Q Consensus 666 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 745 (967)
.+..+|++++... +.+...|...+..+.+.|+.++|..+|+++... +.+...+.. |....+.++. ++.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHH
Confidence 3456677766643 334666777777777777777888888777766 223222221 2111111111 11111
Q ss_pred hCC------------CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHH
Q 048794 746 SGG------------FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG-DVETACELFK 812 (967)
Q Consensus 746 ~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~ 812 (967)
+.- ......+|...+....+.+..+.|..+|+++ .. ...+..+|...+......+ +.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0001123444445554555566666666666 21 1223334443333322222 4666666666
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 813 QMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 813 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
.+++. .|+ ...+...+....+.|+.+.|..+|+++. .....|...++.-...|+.+.+..++++..
T Consensus 345 ~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 345 SGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66553 233 3333344555555566666666666541 134445555555555566666666565554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-09 Score=99.58 Aligned_cols=119 Identities=8% Similarity=0.116 Sum_probs=56.9
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH-HHhcCCH--
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDC-LCMVGRV-- 839 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~-- 839 (967)
...|++++|+..++++++.. +.+...|..++.+|...|++++|+..|+++++. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34455555555555555432 223445555555555555555555555555542 23 23444555555 4455554
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 840 DDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
++|...++++++.+ +.+...+..++.++...|++++|...++++++
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555555432 22344455555555555555555555555554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-08 Score=101.26 Aligned_cols=165 Identities=15% Similarity=0.035 Sum_probs=127.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCH---H-HHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHH
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCK-PNC---V-IYNILINGFGKTGDVETACELFKQMIKGGI-RPD----LKSYS 827 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~---~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~ 827 (967)
..+..+...|++++|...++++.+.... |+. . .+..++..+...+++++|+..|+++++... .++ ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788899999999999999875221 121 1 334577788888999999999999998321 122 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhH
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKL----N-GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKR----GISPD-LYTY 896 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~ 896 (967)
.++.+|...|++++|+.+|+++++ . +..+ ...++..++.+|.+.|++++|...++++++. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999984 1 1112 2347889999999999999999999998732 22222 5788
Q ss_pred HHHHHHHHhcC-CHHHHHHhhcCCCcC
Q 048794 897 NSLILNLGRAG-MVEEARKLAGGNCFV 922 (967)
Q Consensus 897 ~~l~~~~~~~g-~~~~A~~~~~~~l~~ 922 (967)
..++.++.+.| ++++|+..+++++.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999 579999999999865
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.9e-08 Score=100.34 Aligned_cols=127 Identities=14% Similarity=0.035 Sum_probs=58.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHH
Q 048794 794 LINGFGKTGDVETACELFKQMIKGG---IRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLN--GLDAD----TISYN 862 (967)
Q Consensus 794 l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~ 862 (967)
++..+...|++++|+..++++++.. ..+. ..+++.++.+|...|++++|+.+++++++. ..+.+ ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 3444445555555555555554310 1111 234455555555555555555555555410 00111 13445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-HHhHHHHHHHHHhcCCHHHH-HHhhcCCC
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRG----ISPD-LYTYNSLILNLGRAGMVEEA-RKLAGGNC 920 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~l 920 (967)
.++.+|...|++++|+..++++++.. .... ..++..++.++.+.|++++| ..++++++
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 55555555555555555555554210 0000 24445555555555555555 44455444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-07 Score=96.05 Aligned_cols=166 Identities=14% Similarity=0.038 Sum_probs=125.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-----hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---CCC--HH
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP-----CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC---KPN--CV 789 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 789 (967)
.+...+..+...|++++|.+.+.+.+........ ..+..++..+...|++++|+..++++++... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445666777888888888888887775322111 2344567778889999999999999986421 112 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKG-GIRPD-----LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DT 858 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~ 858 (967)
+++.++.+|...|++++|+..|+++++. ...|+ ..+++.++.+|...|++++|+.+++++++. +... ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8899999999999999999999998831 01222 258899999999999999999999998752 1111 25
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048794 859 ISYNFMINGLGRSGRIEEA-LSLFDEMK 885 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 885 (967)
.++..++.+|...|++++| ...++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77788876
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-08 Score=87.37 Aligned_cols=102 Identities=14% Similarity=-0.024 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
...+..++..+.+.|++++|+..|++++. ..|+ ...|..++.+|...|++++|+..|+++++.+ +.++..+..++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34677777777788888888888888777 3554 5677778888888888888888888877643 335667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLY 894 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 894 (967)
+|...|++++|+..|+++++ +.|++.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 88888888888888888775 345553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.8e-07 Score=89.38 Aligned_cols=235 Identities=10% Similarity=0.042 Sum_probs=174.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-C-CH
Q 048794 658 LLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG-RVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS-N-SI 734 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 734 (967)
..+.+..++|++++..++..++ .+..+|+....++...| .+++++.++..++..+ +.+..+|+.-..++... + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 3455566789999999998763 36778888888888888 5999999999999886 45778888888888776 7 88
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---
Q 048794 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLE--------EAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD--- 803 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 803 (967)
++++..++++++.+ +.+-.+|.....++.+.|.++ ++++.++++++..+ -|..+|+....++.+.+.
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccccc
Confidence 99999999999874 445556766666666666666 89999999998753 377899999888887776
Q ss_pred ----HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----
Q 048794 804 ----VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRV--------------------DDALHYFEELKLNG----- 853 (967)
Q Consensus 804 ----~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----- 853 (967)
++++++.+++++.. .|+ ..+|+.+..++.+.|+. .+.......+....
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 78999999999984 565 68888888888877764 22222222222211
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHH
Q 048794 854 LDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-LYTYNSL 899 (967)
Q Consensus 854 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 899 (967)
..+++.++..|+++|.+.|+.++|.++++.+.+. ..|- ...|.-.
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~ 343 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFR 343 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHH
Confidence 0246778888999999999999999999998754 3333 3444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.84 E-value=6.9e-09 Score=90.05 Aligned_cols=114 Identities=16% Similarity=0.230 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
...+..++..+...|++++|+..|+++++. .| +..++..++.++...|++++|..+++++++.. +.+...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 345555666666666666666666666553 23 34555566666666666666666666665532 334455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
++...|++++|...++++.+. .+.+...+..++.++..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHh
Confidence 666666666666666666543 23334555555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.83 E-value=4e-06 Score=91.40 Aligned_cols=386 Identities=9% Similarity=-0.014 Sum_probs=196.9
Q ss_pred HHHHHHccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc-HHHHHHHHHHHHHc-C
Q 048794 5 FDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGF-CREALAVYKRVVSE-G 82 (967)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~-~ 82 (967)
|++.+...+......|...+..+-. |+++.+..+|++.... .|++.+|...+....+.+. .+....+|+..+.. |
T Consensus 3 ~e~~~~~~i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg 79 (493)
T 2uy1_A 3 AEEKMGVELSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFE 79 (493)
T ss_dssp ---------CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHST
T ss_pred hHHHcCcchHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcC
Confidence 3434433466666677766666655 7788888888888874 3577888877777766663 34566677776653 3
Q ss_pred C-CCCHhhHHHHHHHHH----ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048794 83 I-KPSLKTYSALMVAAG----KRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDV 157 (967)
Q Consensus 83 ~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 157 (967)
. ..+...|...+..+. ..++.+.++.+|+.+.......-...|......-. ..+...+..++.+..
T Consensus 80 ~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~~-------- 150 (493)
T 2uy1_A 80 NYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGDTL-------- 150 (493)
T ss_dssp TCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHHH--------
T ss_pred CCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHHHh--------
Confidence 2 235566666665443 24567778888888776321111122222222111 111222222221111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-------CHHHHHHHHHHHHhCCCCCcHhHH
Q 048794 158 VTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCG-------NIEVVKEFWSQMVADGYAADVVTY 230 (967)
Q Consensus 158 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~ 230 (967)
+.+..|..+++.+...-...+...|...+..-...+ ..+.+..++++++... +.++..|
T Consensus 151 -------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW 216 (493)
T 2uy1_A 151 -------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVY 216 (493)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHH
Confidence 112222222322221000011223333332221110 0234555666665542 3356666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCCC---CHHHHHH
Q 048794 231 TIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEIL-----GVQP---TAYTYIL 302 (967)
Q Consensus 231 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~---~~~~~~~ 302 (967)
...+..+.+.|+++.|..++++.... +.+...|.... .+...++. ...+.+..... +..+ ....+..
T Consensus 217 ~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~-~~~e~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 217 FFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYG-LVMDEEAV--YGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH-HHTTCTHH--HHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHH-hhcchhHH--HHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 66666666777777777777776665 22322222111 11111110 11111110000 0001 1234555
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048794 303 FIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAE-TGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVG 381 (967)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (967)
.+....+.++.+.|..+|+++ .. ...+...|......-.. .++.+.|..+|+...+.- +.+...+...+......|
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC
Confidence 555555677888999999888 32 11222333322222222 336889999998887652 334445555666667788
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 382 QVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMK 429 (967)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 429 (967)
+.+.|+.+++.+. .....|...+..-...|+.+.+..++++..
T Consensus 369 ~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 369 DEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp CHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998872 245677777777778899998888888765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.5e-09 Score=89.91 Aligned_cols=97 Identities=9% Similarity=-0.030 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 904 (967)
.+..++..+...|++++|+..|+++++.+ +.+...+..++.++...|++++|+..++++++. .|.+...+..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHH
Confidence 34444444444444444444444444422 223444444444444444444444444444432 1222344444444444
Q ss_pred hcCCHHHHHHhhcCCCcCC
Q 048794 905 RAGMVEEARKLAGGNCFVQ 923 (967)
Q Consensus 905 ~~g~~~~A~~~~~~~l~~~ 923 (967)
..|++++|+..++++++++
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 4455555555555444444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=87.34 Aligned_cols=102 Identities=9% Similarity=-0.049 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 904 (967)
.+..++..+.+.|++++|+..++++++.+ +.+...+..++.++...|++++|+..++++++. -|.+...+..++.++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 45677788888888888888888888753 446777888888888888888888888888864 3445578888888888
Q ss_pred hcCCHHHHHHhhcCCCcCCCCccc
Q 048794 905 RAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 905 ~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
..|++++|+..++++++++|+++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 888888888888888888887653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.2e-10 Score=106.63 Aligned_cols=86 Identities=10% Similarity=0.033 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeecc
Q 048794 860 SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAE 938 (967)
Q Consensus 860 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~ 938 (967)
++..++.+|...|++++|+..++++++. .+.+..++..++.++...|++++|+..++++++++|+++.+ ..++.++..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 3444444444444444444444444432 22233444444444444444555554444444444444444 344444444
Q ss_pred CCCccccc
Q 048794 939 NPRATSLS 946 (967)
Q Consensus 939 ~g~~~~~~ 946 (967)
.|+.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 44444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-07 Score=94.46 Aligned_cols=134 Identities=11% Similarity=0.106 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-C-CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH-----
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT-G-DVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVD----- 840 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~----- 840 (967)
+++++..++.++... +.+..+|+.-..++... + ++++++++++++++. .| +..+|.....++.+.|.++
T Consensus 105 l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 105 LEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchh
Confidence 455555555554432 12334444444444333 3 445555555555542 23 2344444444444444444
Q ss_pred ---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 048794 841 ---DALHYFEELKLNGLDADTISYNFMINGLGRSGR-------IEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG 907 (967)
Q Consensus 841 ---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 907 (967)
+++++++++++.+ +.+..+|+..+.++.+.|+ ++++++.+++++.. .+.|...|..+..++.+.|
T Consensus 182 ~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 5555555555432 2244445555555544443 45555555555542 2333344444444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.9e-08 Score=84.41 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=61.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNG--LDAD----TISYN 862 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~ 862 (967)
.+..++..+.+.|++++|+..|+++++ +.|+ ..++..++.+|...|++++|+..++++++.+ ..++ ..++.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 455666666666666666666666666 3444 4566666666666666666666666665421 0111 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNS 898 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 898 (967)
.++.++...|++++|++.|+++++ ..|++.....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 566666666666666666666664 3455554433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=88.81 Aligned_cols=103 Identities=8% Similarity=-0.058 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHhHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG--ISPD----LYTYN 897 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~ 897 (967)
.++..+|..+.+.|++++|+..|+++++.+ +.+..+|..++.+|...|++++|++.++++++.. ..++ ..++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 567889999999999999999999999854 4467889999999999999999999999998531 1111 24678
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCCcCCCCcc
Q 048794 898 SLILNLGRAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 898 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
.++.++...|++++|++.+++++..+|+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 899999999999999999999999888643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-09 Score=97.15 Aligned_cols=125 Identities=14% Similarity=0.013 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLN--------G---------LDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
.+...+..+.+.|++++|+..|++++.. + -+....++..++.+|...|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555555555555555555532 0 0112356777888888888888888888888764
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcc-cc-ccceeeeccCCCcccccchhh
Q 048794 888 GISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEF-VS-SELQVIYAENPRATSLSHKHC 950 (967)
Q Consensus 888 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~-~~l~~~~~~~g~~~~~~~~~~ 950 (967)
-|.+..+|..++.++...|++++|+..+++++.++|+++ .. ..|+.+....++..+.+++.+
T Consensus 93 -~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~ 156 (162)
T 3rkv_A 93 -EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTY 156 (162)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC--
T ss_pred -CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557788888888888888888888888888888887 43 466666666666666555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.79 E-value=9.6e-08 Score=87.76 Aligned_cols=127 Identities=15% Similarity=-0.001 Sum_probs=73.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
.+..++..+...|++++|+..|+++++. .| +..++..++.++...|++++|+..++++++.. +.+..++..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 4555566666666666666666666652 33 34556666666666666666666666666542 33455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHH--HHHHHHHhcCCHHHHHHhhcCCC
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPDLYTYN--SLILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~l 920 (967)
...|++++|...++++.+. .+.+...+. .++..+...|++++|+..+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 6666666666666666643 233334442 33333555666666666666543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-08 Score=91.49 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
...+..++..+...|++++|+..|+++++. .|+ ...+..++.+|...|++++|+..++++++.+ +.+..++..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345666666677777777777777776663 443 5666667777777777777777777766643 334566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 048794 867 GLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~ 886 (967)
+|...|++++|...|+++++
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 77777777777777777664
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-08 Score=85.85 Aligned_cols=103 Identities=15% Similarity=0.029 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 904 (967)
.+..++..+...|++++|...+++++... +.+...+..++.++...|++++|...++++.+. .+.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 44455555555555555555555555432 224445555555555555555555555555543 2233455555555555
Q ss_pred hcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 905 RAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 905 ~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
..|++++|...++++++.+|+++..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQL 108 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 5555555555555555555555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.7e-08 Score=95.21 Aligned_cols=155 Identities=12% Similarity=0.004 Sum_probs=76.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCH
Q 048794 730 KSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY----GCKP-NCVIYNILINGFGKTGDV 804 (967)
Q Consensus 730 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~ 804 (967)
..|++++|...++.+.. .+.....++..++..+...|++++|+..++++.+. +..+ ...++..++.++...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664333322 12233445555666666666666666666665541 1011 122455556666666666
Q ss_pred HHHHHHHHHHHhC----CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHhcCC
Q 048794 805 ETACELFKQMIKG----GIRP-D-LKSYSVLVDCLCMVGRVDDALHYFEELKLN---GLDAD--TISYNFMINGLGRSGR 873 (967)
Q Consensus 805 ~~A~~~~~~~~~~----~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~ 873 (967)
++|+..+++.++. +..| . ..++..++.++...|++++|...+++++.. .-.+. ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665441 1011 1 234555566666666666666666655421 00111 1234455666666666
Q ss_pred HHHHHHHHHHHH
Q 048794 874 IEEALSLFDEMK 885 (967)
Q Consensus 874 ~~~A~~~~~~~~ 885 (967)
+++|.+.++++.
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666555
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=88.90 Aligned_cols=105 Identities=15% Similarity=-0.013 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDA------D-----TISYNFMINGLGRSGRIEEALSLFDEMKKR-----G 888 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 888 (967)
.+...+..+...|++++|+..|+++++..... + ..+|..++.++...|++++|+..++++++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 45566677777777777777777777532110 1 237888888889999999999999988862 1
Q ss_pred CCCCH-HhH----HHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 889 ISPDL-YTY----NSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 889 ~~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+.|+. ..| ...+.++...|++++|+..|+++++++|++...
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 16665 788 899999999999999999999999999999885
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-08 Score=88.35 Aligned_cols=107 Identities=15% Similarity=0.050 Sum_probs=81.0
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 775 LFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 775 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.|++++.. .| +...+..++..+...|++++|+..|++++.. .|+ ...+..++.++...|++++|+..|++++..
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45555553 23 3446777888888888888888888888773 554 677888888888888888888888888875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+ +.++.++..++.+|...|++++|...|+++++
T Consensus 85 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 85 D-IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp S-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 34667778888888888888888888888875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-08 Score=102.06 Aligned_cols=196 Identities=7% Similarity=-0.053 Sum_probs=123.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 717 NTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILIN 796 (967)
Q Consensus 717 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 796 (967)
+...+..++..+...|++++|+..|++++... +.+...+..++.+|.+.|++++|+..++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455666666777777777777777777653 3355677778888888888888888888888753 235668888888
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048794 797 GFGKTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIE 875 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 875 (967)
+|...|++++|+..|+++++. .|+. ..+...+....+ ..++..+.. ......+.+......++..+ .|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWNS-IEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHHH-HHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHHH-HHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 888888888888888888762 3321 011111111111 111222222 22233455555555565543 68889
Q ss_pred HHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhc-CCHHHHHHhhcCCCcCCC
Q 048794 876 EALSLFDEMKKRGISPDL-YTYNSLILNLGRA-GMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 876 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p 924 (967)
+|++.++++++ ..|+. .....+...+... +.+++|..++.++.+..+
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999888875 45554 4455666666665 678899999987776433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-07 Score=83.49 Aligned_cols=116 Identities=17% Similarity=0.081 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
...|..++..+...|++++|+..|+++++. .| +..++..++.++...|++++|+..++++++.. +.+..++..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 335566666666666666666666666653 33 34556666666666666666666666666532 334555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG 907 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 907 (967)
++...|++++|...++++.+. .+.+...+..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL-DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhc
Confidence 666666666666666666542 2222355555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-08 Score=103.82 Aligned_cols=151 Identities=13% Similarity=-0.011 Sum_probs=119.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN--------------CVIYNILING 797 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 797 (967)
+++++|+..++...... +.....+..++..|.+.|++++|+..|+++++..+... ..+|..++.+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444333221 22456788899999999999999999999998643321 4789999999
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEE 876 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 876 (967)
|.+.|++++|+..|+++++. .|+ ..+++.++.+|...|++++|+..|+++++.. +.+..++..++.++...|++++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999984 565 7889999999999999999999999999853 4467788999999999999999
Q ss_pred H-HHHHHHHHH
Q 048794 877 A-LSLFDEMKK 886 (967)
Q Consensus 877 A-~~~~~~~~~ 886 (967)
| ...|+++..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 8 456776653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-07 Score=85.77 Aligned_cols=128 Identities=15% Similarity=0.102 Sum_probs=104.4
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDC 832 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 832 (967)
..+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++++|+..++++++. .|+ ..++..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356778888899999999999999998864 336778999999999999999999999999884 454 6788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 048794 833 LCMVGRVDDALHYFEELKLNGLDADTISYNF--MINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 833 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
+...|++++|...++++++.. +.+...+.. ++..+...|++++|+..+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999998753 335555533 4444788899999999988765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-07 Score=82.22 Aligned_cols=118 Identities=13% Similarity=0.049 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
...+..++..+...|++++|...+++++... +.+...+..++.++...|++++|...++++.+. .+.+...+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccCHHHHHHHHHH
Confidence 3456666666777777777777777766542 335556666777777777777777777776653 33345666667777
Q ss_pred HHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCc
Q 048794 903 LGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRA 942 (967)
Q Consensus 903 ~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~ 942 (967)
+...|++++|+..++++++++|+++.+ ..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777766665 5666666666654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=6e-08 Score=90.26 Aligned_cols=126 Identities=9% Similarity=0.059 Sum_probs=75.3
Q ss_pred hccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--
Q 048794 799 GKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMING-LGRSGRI-- 874 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 874 (967)
...|++++|+..+++.++. .| +...+..++.+|...|++++|...|+++++.+ +.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 3456666666666666653 33 34566666666666666666666666666532 3345556666666 5566666
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 875 EEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
++|...++++++. .+.+...+..++.++...|++++|+..++++++++|+++.
T Consensus 98 ~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALAL-DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 6666666666653 2334466666666666666666666666666666666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-08 Score=96.45 Aligned_cols=153 Identities=12% Similarity=-0.010 Sum_probs=98.4
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-----------------HHH
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-----------------LKS 825 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----------------~~~ 825 (967)
....|+++.+.+.++...+.. ......+..++..+...|++++|+..|+++++. .|+ ..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHH
Confidence 344455555555554333210 112345667777777788888888888887763 222 267
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
+..++.++...|++++|+..++++++.. +.+..++..++.+|...|++++|...++++++. .|.+..++..++.++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHH
Confidence 7888888888899999999998888753 446778888888888999999999999888864 34456788888888888
Q ss_pred cCCHHHHH-HhhcCCC
Q 048794 906 AGMVEEAR-KLAGGNC 920 (967)
Q Consensus 906 ~g~~~~A~-~~~~~~l 920 (967)
.|+.+++. ..+.+.+
T Consensus 169 ~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHC----------
T ss_pred HHHHHHHHHHHHHHHh
Confidence 88877777 4444444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.1e-08 Score=83.04 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP--DLYTYNSLI 900 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 900 (967)
...+..++.++...|++++|...++++++.. +.+...+..++.++...|++++|...++++++. .+. +..++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHH
Confidence 3456677777777777777777777777643 345666777777777788888888888777763 333 457777777
Q ss_pred HHHHhc-CCHHHHHHhhcCCCcCCCCcc
Q 048794 901 LNLGRA-GMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 901 ~~~~~~-g~~~~A~~~~~~~l~~~p~~~ 927 (967)
.++... |++++|++.+++++...|+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 788888 888888888888887777764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-07 Score=81.61 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
..|..++..+...|++++|+..|+++++. .|+ ...+..++.++...|++++|+..++++++.+ +.+..++..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 35666677777777777777777777763 443 5677777777777777777777777777643 3356667777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 048794 868 LGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 868 ~~~~g~~~~A~~~~~~~~~ 886 (967)
+...|++++|...++++++
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 7777777777777777765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-07 Score=79.32 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
..+..++.++...|++++|..+++++++.. +.+...+..++.++...|++++|...++++.+. .+.+...+..++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHH
Confidence 344555555555555555555555555432 223444555555555555555555555555542 233344555555555
Q ss_pred HhcCCHHHHHHhhcCCCcCCCCcccc-ccceeee
Q 048794 904 GRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIY 936 (967)
Q Consensus 904 ~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~ 936 (967)
...|++++|..++++++..+|+++.. ..++.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 55555555555555555555555544 3444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.6e-08 Score=87.28 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNF 863 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 863 (967)
...+..++..+...|++++|+..|+++++ ..|+ ...+..++.++...|++++|+..++++++.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 34555555555555555555555555555 2344 3444555555555555555555555555432 223444455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048794 864 MINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 864 l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
++.++...|++++|...++++++
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.1e-07 Score=89.74 Aligned_cols=193 Identities=8% Similarity=0.056 Sum_probs=152.4
Q ss_pred hcCCH-HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 730 KSNSI-DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR----------LEEAKKLFEEMLDYGCKPNCVIYNILINGF 798 (967)
Q Consensus 730 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (967)
..|.+ ++|+..+..++..+ |....+++....++...|. +++++.+++.++... +.+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444 57999999999874 3333455555555444443 688999999999864 34788999988888
Q ss_pred hccC--CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 048794 799 GKTG--DVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGR-VDDALHYFEELKLNGLDADTISYNFMINGLGRS--- 871 (967)
Q Consensus 799 ~~~~--~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 871 (967)
...+ .+++++++++++++. .| |..+|+....++...|. +++++++++++++.+ +.+..+|+..+.++...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 8777 489999999999994 55 57899999999999998 699999999999864 44777888888887765
Q ss_pred -----------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----------CCHHHHHHhhcCCCcCCCCcccc
Q 048794 872 -----------GRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA-----------GMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 872 -----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+.++++++.+.+++.. .|.|..+|..+-.++.+. +.++++++.++++++++|++ .|
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~-~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w 273 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KW 273 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred cccccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-ch
Confidence 5689999999999975 455668888777777766 46899999999999999998 45
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=104.83 Aligned_cols=171 Identities=9% Similarity=0.081 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD----------VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG 837 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 837 (967)
.++|++.+++++..++ .+..+|+.-..++...|+ ++++++.++++++. .|. ..+|++.++++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 4678999999998642 256688888877777776 89999999999984 565 689999999999999
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--------
Q 048794 838 --RVDDALHYFEELKLNGLDADTISYNFMINGLGRSG-RIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA-------- 906 (967)
Q Consensus 838 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 906 (967)
+++++++.++++++.+ +-+..+|+..+.++.+.| .++++++.++++++. .+.+..+|...+.++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-TCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCCccHHHHHHHHHHhhcccccccc
Confidence 6799999999999864 447888999999999999 899999999999864 344668898888887774
Q ss_pred ------CCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCccc
Q 048794 907 ------GMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATS 944 (967)
Q Consensus 907 ------g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~ 944 (967)
+.+++|++++++++.++|+|..+ +++++++...|++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 66899999999999999999987 799999999998776
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=6.5e-08 Score=85.46 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMI 865 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 865 (967)
+...+..++..+...|++++|+..|++++.. .|+ ...+..++.++...|++++|...++++++.+ +.+...+..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 3445555555555555666666666555552 333 4455555555555555555555555555432 22444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 048794 866 NGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~ 885 (967)
.++...|++++|...+++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 55555555555555555555
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-08 Score=109.02 Aligned_cols=135 Identities=14% Similarity=-0.011 Sum_probs=107.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
+..++..+.+.|++++|++.|+++++. .|+ ..++..++.+|.+.|++++|+..++++++.+ +.+..++..++.+|.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344556677889999999999999884 565 6888999999999999999999999999864 446788899999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH--HHhcCCHHHHHHhhc-----------CCCcCCCCcccc
Q 048794 870 RSGRIEEALSLFDEMKKRGISPDLYTYNSLILN--LGRAGMVEEARKLAG-----------GNCFVQPSEFVS 929 (967)
Q Consensus 870 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~l~~~p~~~~~ 929 (967)
..|++++|.+.++++++. .+.+...+..++.+ +.+.|++++|++.++ +++.++|+....
T Consensus 86 ~~g~~~eA~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHTCHHHHHHHHHHHHHH-STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 999999999999999874 33345677777766 888899999999999 999999987665
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.1e-08 Score=101.92 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=46.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPDLK------------------SYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
+..++..+.+.|++++|+..|++++. ..|+.. ++..++.+|.+.|++++|+..++++++.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444455555555555555555544 233322 4445555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHH-hcCCHHHHHHhhcCCCcCCCCcc
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-LYTYNSLILNLG-RAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
+ +.+..++..++.+|...|++++|...|+++++ +.|+ ..++..+..+.. ..+..+++.+.+++++..+|+++
T Consensus 260 ~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 260 E-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 2 22444555555555555555555555555543 2222 234444444322 23444555555555555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=89.95 Aligned_cols=158 Identities=12% Similarity=-0.011 Sum_probs=85.5
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK----GGIRPD-LKSYSVLVDCLCMVGRV 839 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~ 839 (967)
..|++++|.+.++.+... +.....++..++.++...|++++|+..+++++. .+..|. ..++..++.++...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444331 112334666666666666666666666666654 111222 34556666666666666
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHhHHHHHHHHHhcCC
Q 048794 840 DDALHYFEELKLN----GLDA--DTISYNFMINGLGRSGRIEEALSLFDEMKKRG-ISPD----LYTYNSLILNLGRAGM 908 (967)
Q Consensus 840 ~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~ 908 (967)
++|...++++++. +-.+ ...++..++.++...|++++|...++++.+.. -.++ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666666531 1011 12345566666666666666666666655210 0111 1334566666666666
Q ss_pred HHHHHHhhcCCCcCC
Q 048794 909 VEEARKLAGGNCFVQ 923 (967)
Q Consensus 909 ~~~A~~~~~~~l~~~ 923 (967)
+++|...+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.6e-07 Score=81.99 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
..+..++..+...|++++|+..|++++.. .|+ ...+..++.++...|++++|+..|++++..+ +.++..+..++.+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 35666677777777777777777777763 453 5667777777777777777777777777643 3355667777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 048794 868 LGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 868 ~~~~g~~~~A~~~~~~~~~ 886 (967)
|...|++++|...++++++
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.1e-09 Score=88.14 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 801 TGDVETACELFKQMIKGGI-RPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEAL 878 (967)
Q Consensus 801 ~~~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 878 (967)
.|++++|+..|+++++.+. .|+ ..++..++.+|...|++++|+..++++++.+ +.+..++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555566666666555210 132 3455555555555566666666666555532 224455555555555556666666
Q ss_pred HHHHHHHH
Q 048794 879 SLFDEMKK 886 (967)
Q Consensus 879 ~~~~~~~~ 886 (967)
..++++++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-08 Score=108.28 Aligned_cols=144 Identities=13% Similarity=0.054 Sum_probs=108.3
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----------------HHHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD----------------LKSYSV 828 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----------------~~~~~~ 828 (967)
..+++++|+..|+...+.. +.....|..++..+.+.|++++|+..|+++++. .|+ ..++..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHH
Confidence 3345566666665554421 113457888899999999999999999998873 343 467888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcC
Q 048794 829 LVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-LYTYNSLILNLGRAG 907 (967)
Q Consensus 829 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 907 (967)
++.+|.+.|++++|+..++++++.+ +.+..++..++.+|...|++++|+..|+++++ +.|+ ..++..++.++.+.|
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence 8889999999999999999988754 44677888888999999999999999998886 4444 477888888888888
Q ss_pred CHHHHHH
Q 048794 908 MVEEARK 914 (967)
Q Consensus 908 ~~~~A~~ 914 (967)
++++|.+
T Consensus 400 ~~~~a~~ 406 (457)
T 1kt0_A 400 EHNERDR 406 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=82.80 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=44.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 048794 793 ILINGFGKTGDVETACELFKQMIKGGIRPD-L---KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD---TISYNFMI 865 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 865 (967)
.++..+...|++++|+..|+++++. .|+ . .++..++.++...|++++|...++++++.. +.+ +.++..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 3444455555555555555555542 222 1 344455555555555555555555555421 112 34444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 048794 866 NGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.++...|++++|...++++++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.61 E-value=7.7e-09 Score=112.82 Aligned_cols=124 Identities=10% Similarity=-0.038 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 904 (967)
.+..++..+...|++++|++.|+++++.. +.+..++..++.+|.+.|++++|+..++++++. .+.+...+..++.++.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34556777888999999999999999853 446889999999999999999999999999975 3445689999999999
Q ss_pred hcCCHHHHHHhhcCCCcCCCCcccc-ccceee--eccCCCcccccchhh
Q 048794 905 RAGMVEEARKLAGGNCFVQPSEFVS-SELQVI--YAENPRATSLSHKHC 950 (967)
Q Consensus 905 ~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~--~~~~g~~~~~~~~~~ 950 (967)
..|++++|++.++++++++|+++.+ ..++.+ +...|++++|...+.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999988 678777 889999999988555
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-08 Score=106.06 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhC--------------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKG--------------GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
...+..++..+.+.|++++|+..|+++++. ...|. ..++..++.+|.+.|++++|+..++++++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 346777888888888888888888888761 01222 345566666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHh
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKL 915 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 915 (967)
+ +.+..++..++.+|...|++++|+..++++++. .+.+..++..++.++...++++++.+.
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234556666666666666666666666666653 233445556666666666666655543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=74.77 Aligned_cols=109 Identities=17% Similarity=0.029 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
..+..++..+...|++++|+..|++++.. .| +...+..++.++...|++++|...++++++.. +.+...+..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45556666666666777777777766653 33 35566666666666777777777777666542 3345566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048794 868 LGRSGRIEEALSLFDEMKKRGISPDLYTYNSLIL 901 (967)
Q Consensus 868 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 901 (967)
+...|++++|.+.++++.+. .+.+...+..++.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH-EANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHc-CCCCHHHHHHHHH
Confidence 77777777777777776643 2223344444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-06 Score=78.15 Aligned_cols=104 Identities=13% Similarity=0.000 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD----TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNS 898 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 898 (967)
...+..++..+...|++++|...|+++++. .|+ ...+..++.+|...|++++|+..++++++. .+.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHH
Confidence 344455555555555555555555555542 232 344444555555555555555555555432 2223344555
Q ss_pred HHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 899 LILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 899 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++.++...|++++|+..++++++++|+++.+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 135 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 5555555555555555555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.2e-07 Score=100.75 Aligned_cols=204 Identities=9% Similarity=0.006 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--
Q 048794 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR----------LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG-- 802 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 802 (967)
++|++.+++++..+ +....+|+....++...|+ ++++++.++++++.. +.+..+|+.-..++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 44455555555442 2222344444444444444 788999999998865 337778888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 048794 803 DVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVG-RVDDALHYFEELKLNGLDADTISYNFMINGLGRS--------- 871 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 871 (967)
+++++++.++++++. .| +..+|+..+.++.+.| .+++++++++++++.+ +.+..+|...+.++...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999984 55 4688999999998888 8999999999998764 44677888888887663
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH------------HHHhhcCCCcCCCCcc-cc-ccc
Q 048794 872 -----GRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEE------------ARKLAGGNCFVQPSEF-VS-SEL 932 (967)
Q Consensus 872 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~l~~~p~~~-~~-~~l 932 (967)
+.+++|++.+++++.. .|.+..+|..+.+++.+.|++++ |+..|.+++.++|... .. ..=
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~-~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~ 279 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVD 279 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH-CSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTTBCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccccceEEeec
Confidence 5689999999999974 45556999999999999998777 6777999999999874 21 111
Q ss_pred eeeeccCCCccccc
Q 048794 933 QVIYAENPRATSLS 946 (967)
Q Consensus 933 ~~~~~~~g~~~~~~ 946 (967)
+. ...+.|.++.
T Consensus 280 ~~--~~~~~W~~~~ 291 (567)
T 1dce_A 280 EA--PLSVEWRTPD 291 (567)
T ss_dssp SS--EECCCCBCTT
T ss_pred Cc--ccceeeccCC
Confidence 22 4466666543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.5e-07 Score=83.65 Aligned_cols=103 Identities=10% Similarity=-0.072 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
..+..++.++...|++++|+..|+++++.+ +.+...+..++.+|...|++++|+..++++++. .+.+...|..++.++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV-DPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 445555555555666666666666555532 224455555555666666666666666655543 223345555556666
Q ss_pred HhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 904 GRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 904 ~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
...|++++|+..++++++++|+++.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHccCHHHHHHHHHHHHHhCCCchH
Confidence 6666666666666666666665555
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.5e-07 Score=79.33 Aligned_cols=101 Identities=9% Similarity=-0.112 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
...+..++..+...|++++|+..|++++..+ +.+..++..++.++...|++++|...++++++. .+.+...+..++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CchhHHHHHHHHHH
Confidence 3444555555555555555555555554432 223444555555555555555555555555442 22233445555555
Q ss_pred HHhcCCHHHHHHhhcCCCcCCCC
Q 048794 903 LGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 903 ~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
+...|++++|+..++++++++|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 55555555555555555555554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=98.75 Aligned_cols=125 Identities=11% Similarity=0.024 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------------------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADT------------------ISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
..+..++..+...|++++|+..|++++.. .|+. .++..++.+|.+.|++++|+..+++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45778899999999999999999999874 3433 278899999999999999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchhhh
Q 048794 886 KRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCE 951 (967)
Q Consensus 886 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~ 951 (967)
+. .+.+..++..++.++...|++++|+..++++++++|+++.+ ..|+.+........+..++.++
T Consensus 258 ~~-~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 258 TE-EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 34466899999999999999999999999999999999998 6888886555444443333443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-06 Score=93.46 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=16.8
Q ss_pred HHHHHccCChHHHHHHHHHHHhCC
Q 048794 690 LDGYGKSGRVEELLKLYEEMSFRG 713 (967)
Q Consensus 690 ~~~~~~~g~~~~A~~~~~~~~~~~ 713 (967)
+..+.+.|++++|++.|.++.+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~ 34 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKD 34 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC
Confidence 455666777777777777777653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=5e-07 Score=77.15 Aligned_cols=93 Identities=14% Similarity=-0.011 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC 834 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 834 (967)
+..++..+.+.|++++|+..|+++++.. +.+...|..++.++...|++++|+..|+++++ ..|+ ..++..++.++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3344444455555555555555554432 11334444455555555555555555555444 2333 344444555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048794 835 MVGRVDDALHYFEELKL 851 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~ 851 (967)
..|++++|+..++++++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.53 E-value=6.6e-08 Score=84.53 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGL--DAD----TIS 860 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~ 860 (967)
...+..++..+...|++++|+..|+++++. .| +...+..++.++...|++++|..+++++++... .++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 346777888888888888888888888774 34 467778888888888888888888888875321 112 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 861 YNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 861 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
+..++.++...|++++|.+.++++.+ ..|+...+..+..+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Confidence 77788888888888888888888876 34566666666555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7e-07 Score=77.84 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=66.7
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--CCCC----HHHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGG--IRPD----LKSYS 827 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~----~~~~~ 827 (967)
..+..++..+...|++++|+..|+++.+.. +.+..++..++.++...|++++|+..++++++.. ..++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345566666666777777777777666643 2345566666666666677777777777666521 0111 44566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
.++.++...|++++|...|+++++. .|++.....+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 6666667777777777777766653 3455544444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-06 Score=75.00 Aligned_cols=101 Identities=14% Similarity=0.006 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADT---ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD---LYTYNSLI 900 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 900 (967)
..++..+...|++++|...|+++++.. +.+. .++..++.++...|++++|...++++++. .|.+ ..++..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-CCCCcccHHHHHHHH
Confidence 344444555555555555555554421 1111 34444555555555555555555555432 1222 34444555
Q ss_pred HHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 901 LNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 901 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.++...|++++|+..+++++..+|+++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 55555555555555555555555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-07 Score=84.86 Aligned_cols=134 Identities=17% Similarity=0.036 Sum_probs=71.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGI-RPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DTI 859 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 859 (967)
++..++..+...|++++|+..++++++... .++ ..++..++.++...|++++|..+++++++. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455555555566666666666665554100 011 134555666666666666666666665531 1000 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCC
Q 048794 860 SYNFMINGLGRSGRIEEALSLFDEMKKR----GISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQ 923 (967)
Q Consensus 860 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 923 (967)
++..++.++...|++++|...++++++. +.++. ...+..++.++...|++++|..++++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4555666666666666666666665521 11111 2345566666666666666666666665443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-06 Score=76.11 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=64.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD-------------LKSYSVLVDCLCMVGRVDDALHYFEELKLN---- 852 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 852 (967)
.+...+..+...|++++|+..|+++++ +.|+ ...|.+++.++...|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 444555556666666666666666665 2333 226777788888888888888888887763
Q ss_pred -CCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 853 -GLDA-DTISY----NFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 853 -~~~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.+.| +...| ...+.++...|++++|+..|+++++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0144 44567 7788888888888888888888874
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.7e-07 Score=80.43 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=70.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC--------C--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKG--------G--------IRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~--------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.+...+..+.+.|++++|+..|++++.. . ..|. ...+..++.+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444444555555555555555554441 0 0233 356777888888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhc
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL--YTYNSLILNLGRA 906 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 906 (967)
+ +.+..++..++.+|...|++++|...|+++++. .|+. .+...+..+..+.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREMKIVTERR 145 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHH
Confidence 3 446677788888888888888888888888763 4443 3344444444333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.45 E-value=9.5e-07 Score=95.96 Aligned_cols=130 Identities=10% Similarity=-0.008 Sum_probs=100.9
Q ss_pred hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 048794 753 PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN--------------CVIYNILINGFGKTGDVETACELFKQMIKGG 818 (967)
Q Consensus 753 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 818 (967)
...+..++..|.+.|++++|+..|+++++...... ..+|..++.+|.+.|++++|+..|+++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 45677888889999999999999999987532211 468888999999999999999999999884
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHH
Q 048794 819 IRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL-FDEMK 885 (967)
Q Consensus 819 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 885 (967)
.|+ ..+++.++.+|...|++++|+..|+++++.+ +.+..++..++.++.+.|++++|.+. ++++.
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 6888999999999999999999999998753 33556788888888888888877643 44443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.7e-06 Score=90.68 Aligned_cols=202 Identities=7% Similarity=-0.044 Sum_probs=115.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCH----------------hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 048794 654 LIHGLLEVHATEMGLDLFTTMKNAGCAPDI----------------STYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPN 717 (967)
Q Consensus 654 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 717 (967)
-+..+.+.|++++|++.|..+++....... .++..++..|...|++++|.+++.++........
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 466778999999999999999987533221 1244556666666666666666655543210000
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 048794 718 TISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY----GCKPN-CVIYN 792 (967)
Q Consensus 718 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 792 (967)
... ....+...+...+...|+++.|+.+++++... +..+. ..++.
T Consensus 90 ~~~------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (434)
T 4b4t_Q 90 KSK------------------------------TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI 139 (434)
T ss_dssp HHH------------------------------HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH
T ss_pred chH------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 000 00012233344455556666666666665431 11222 23566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHH
Q 048794 793 ILINGFGKTGDVETACELFKQMIKG----GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL----NGLDAD--TISY 861 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~~~ 861 (967)
.++..|...|++++|+.+++++... +..|. ..++..++.+|...|++++|..+++++.. .+.++. ...+
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 219 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELD 219 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 6777777777777777777776542 11222 34566667777777777777777776653 111111 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 862 NFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 862 ~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
..++..+...|++++|...+.++.
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 556666677777777777776665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-06 Score=90.30 Aligned_cols=121 Identities=13% Similarity=0.010 Sum_probs=70.0
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHH----------------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLD----------------YGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGG 818 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 818 (967)
.+..++..+.+.|++++|+..|+++++ .. +.+..+|..++.+|.+.|++++|+..++++++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--
Confidence 355556666666666666666666654 10 11233566666666666666666666666665
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048794 819 IRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALS 879 (967)
Q Consensus 819 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 879 (967)
..|+ ..++..++.+|...|++++|+..|+++++.. +.+...+..++.++...++.+++.+
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2443 4566666666666666666666666666532 2244555556666665555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-06 Score=72.05 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=46.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMIN 866 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 866 (967)
.+..++..+...|++++|+..|+++++. .| +...+..++.++...|++++|...++++++.. +. +...+..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 3444444555555555555555555442 22 23444555555555555555555555555432 22 3444555555
Q ss_pred HHHhc-CCHHHHHHHHHHHHH
Q 048794 867 GLGRS-GRIEEALSLFDEMKK 886 (967)
Q Consensus 867 ~~~~~-g~~~~A~~~~~~~~~ 886 (967)
++... |++++|.+.++++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 55555 555555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-06 Score=80.39 Aligned_cols=133 Identities=17% Similarity=0.140 Sum_probs=98.1
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-H
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK-PN----CVIYNILINGFGKTGDVETACELFKQMIKG----GIRPD-L 823 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~ 823 (967)
.++..++..+...|++++|+..++++.+.... ++ ..++..++.++...|++++|+..++++++. +..+. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35667777888888888888888877653111 12 136788888899999999999999987752 11111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
..+..++.++...|++++|...++++++. +.++ ...++..++.++...|++++|.+.++++.+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56778899999999999999999988742 1111 234677889999999999999999998874
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-07 Score=78.48 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc------ccc-cc
Q 048794 859 ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE------FVS-SE 931 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~-~~ 931 (967)
..+..++..+...|++++|+..++++++. .|.+..++..++.++...|++++|+..++++++++|++ ... ..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34444555555555555555555555542 23334555555555555555555555555555555555 322 34
Q ss_pred ceeeeccCCCcccccc
Q 048794 932 LQVIYAENPRATSLSH 947 (967)
Q Consensus 932 l~~~~~~~g~~~~~~~ 947 (967)
++.++...|+++++..
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 5555555555555444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.6e-07 Score=81.59 Aligned_cols=92 Identities=12% Similarity=-0.082 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 836 VGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGR----------IEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 836 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
.+++++|++.++++++.+ +.+...|..++.++...|+ +++|+..|+++++. .|.+..+|..++.+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-dP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-DPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHH
Confidence 345566666666666542 3355556656666655554 35777777777763 23334777777777776
Q ss_pred c-----------CCHHHHHHhhcCCCcCCCCcccc
Q 048794 906 A-----------GMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 906 ~-----------g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
. |++++|++.|+++++++|++..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 5 47888888888888888888764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.33 E-value=7.6e-07 Score=75.66 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048794 836 VGRVDDALHYFEELKLNGL--DADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 836 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 913 (967)
.|++++|+..|+++++.+. +.+..++..++.+|...|++++|+..++++++. .|.+..++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666665320 123445666666666666666666666666653 3334566666666666666666666
Q ss_pred HhhcCCCcCCCCcccc
Q 048794 914 KLAGGNCFVQPSEFVS 929 (967)
Q Consensus 914 ~~~~~~l~~~p~~~~~ 929 (967)
..+++++..+|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 6666666666666665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=73.15 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 048794 822 DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-------LY 894 (967)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~ 894 (967)
+...+..++.++...|++++|+..|+++++.. +.+...+..++.++...|++++|+..++++++ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 34567778888888888888888888888753 44677788888888888888888888888885 3444 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHhhcCCC
Q 048794 895 TYNSLILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 895 ~~~~l~~~~~~~g~~~~A~~~~~~~l 920 (967)
.+..++.++...|++++|+..++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 66677777777777777777766554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=4.3e-05 Score=66.70 Aligned_cols=110 Identities=10% Similarity=0.005 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048794 768 RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDAL 843 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 843 (967)
++++|++.|+++.+.| .++.. ++.+|...+..++|+..|++..+. .+..+.+.|+.+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666654 22222 555555555666666666666653 244566666666665 56666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 048794 844 HYFEELKLNGLDADTISYNFMINGLGR----SGRIEEALSLFDEMKKRG 888 (967)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 888 (967)
++|+++.+.+ ++.+...|+.+|.. .+++++|..+++++.+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666543 44555566666665 566666666666666543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=5.7e-05 Score=65.90 Aligned_cols=111 Identities=12% Similarity=0.032 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK----TGDVETA 807 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A 807 (967)
+++++|+.+|+++.+.+. +. .. ++..|...+..++|++.|+++.+.| +...+..++.+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 456778888888877652 22 22 7777777778888999999888853 67788888888877 7889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 048794 808 CELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDALHYFEELKLNG 853 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 853 (967)
+..|++..+. .+..+...|+.+|.. .+++++|..+|+++.+.+
T Consensus 81 ~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9999998885 356788889988888 788999999999998865
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.15 E-value=9.3e-07 Score=71.03 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
..+..++.++...|++++|...++++++.. +.+...+..++.++...|++++|...++++++. .|.+...+..++.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Confidence 455566666666666666666666666532 234555556666666666666666666666543 233345555555555
Q ss_pred Hhc
Q 048794 904 GRA 906 (967)
Q Consensus 904 ~~~ 906 (967)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-05 Score=86.07 Aligned_cols=126 Identities=11% Similarity=0.012 Sum_probs=92.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CC-CCCC-HHHH
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDY-----GC-KPN-CVIYNILINGFGKTGDVETACELFKQMIK-----GG-IRPD-LKSY 826 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~p~-~~~~ 826 (967)
..+..+|++++|+.+++++++. |. .|+ ..+++.|+.+|...|++++|+.+++++++ .| ..|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456778888888888887652 11 122 23788888889889999999998888775 11 2344 3678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKL-----NGLDA--DTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
++|+.+|..+|++++|..+++++++ .|.+. .......+..++...|.+++|...|.++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999988873 33221 344567788888889999999999988874
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=6.6e-06 Score=71.55 Aligned_cols=90 Identities=11% Similarity=0.078 Sum_probs=65.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDV----------ETACELFKQMIKGGIRPD-LKSYSVLVDCL 833 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 833 (967)
+.+.+++|++.++++++.. +.+...|..++.++...+++ ++|+..|+++++ +.|+ ..+|+.++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 4456788888888888764 33677888888888777654 488888888887 5676 57888888888
Q ss_pred HhcC-----------CHHHHHHHHHHHHHCCCCCCHH
Q 048794 834 CMVG-----------RVDDALHYFEELKLNGLDADTI 859 (967)
Q Consensus 834 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~ 859 (967)
...| ++++|++.|+++++. +|+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~ 125 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNT 125 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCH
Confidence 7764 677777777777763 45433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.07 E-value=1e-05 Score=66.03 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTI-SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLG 904 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 904 (967)
...+..+...|++++|+..++++++.+ +.+.. .+..++.+|...|++++|...++++++. .|+. ..+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~------ 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR------ 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH------
Confidence 346778888999999999999998753 44667 8888999999999999999999999864 3443 44322
Q ss_pred hcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 905 RAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 905 ~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+.+.+|...++++...+|+++..
T Consensus 75 --~~~~~a~~~~~~~~~~~p~~~~~ 97 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYNQLEHHHH 97 (99)
T ss_dssp --HHHHHHHHHHCCTTHHHHCCSSC
T ss_pred --HHHHHHHHHHHHHhccCcccccC
Confidence 78899999999999999988753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.5e-06 Score=70.59 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 805 ETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDE 883 (967)
Q Consensus 805 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 883 (967)
++|+..|+++++. .|+ ...+..++.++...|++++|+..++++++.+ +.....+..++.+|...|++++|...+++
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3577888888873 454 6778888888888888888888888888753 34566788888888888888888888888
Q ss_pred HHHcCC-CCCHHhHHHHHHHHHhcC
Q 048794 884 MKKRGI-SPDLYTYNSLILNLGRAG 907 (967)
Q Consensus 884 ~~~~~~-~~~~~~~~~l~~~~~~~g 907 (967)
+++..- .++......+...+...|
T Consensus 79 al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 79 GLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhccccccHHHHHHHHHHHHHhc
Confidence 874210 123344444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=3e-05 Score=83.47 Aligned_cols=125 Identities=11% Similarity=-0.013 Sum_probs=97.4
Q ss_pred HHhccCCHHHHHHHHHHHHhC---CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHH
Q 048794 797 GFGKTGDVETACELFKQMIKG---GI---RPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL-----NGLD-A-DTISYN 862 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~---~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~-~~~~~~ 862 (967)
.+..+|++++|+.+++++++. -+ .|+ ..++++|+.+|..+|++++|..+++++++ .|.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456889999999999998761 12 233 46789999999999999999999999874 2311 1 345788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---cCCCCC-H---HhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKK---RGISPD-L---YTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
.|+.+|...|++++|..+++++++ .-+.|+ + .....+..++...|.+++|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999872 113333 2 4556788888889999999999988754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.2e-05 Score=64.43 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 770 EEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 770 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
++|+..|+++++.. +.+...+..++.+|...|++++|+..|+++++. .|+ ..++..++.++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35778888888764 336678888888888888888888888888873 454 67788888888888888888888888
Q ss_pred HHH
Q 048794 849 LKL 851 (967)
Q Consensus 849 ~~~ 851 (967)
+++
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0001 Score=58.68 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=40.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
.+..++..+...|++++|+..|+++++. .|+ ..++..++.++...|++++|...++++++.+ +.+..++..++.++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 4555555555555555555555555542 232 4455555555555555555555555555432 22344455555554
Q ss_pred Hh
Q 048794 869 GR 870 (967)
Q Consensus 869 ~~ 870 (967)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.80 E-value=1.5e-05 Score=64.97 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
..++..++.+|...|++++|+..|+++++.+ +.+..++..++.+|...|++++|++.++++++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677777888888888888888888877653 33556777778888888888888888877764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=2.9e-05 Score=66.61 Aligned_cols=88 Identities=20% Similarity=0.103 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCCHHHHHH
Q 048794 840 DDALHYFEELKLNGLDADTISYNFMINGLGRSG---RIEEALSLFDEMKKRGISP--DLYTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 914 (967)
..+.+.|.+....+ +++..+...+++++++++ +.++++.+++.+.+.. .| +.+.++.|+-.+++.|+|++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34455555555544 456666666777777766 5557777777776542 23 23666677777777777777777
Q ss_pred hhcCCCcCCCCcccc
Q 048794 915 LAGGNCFVQPSEFVS 929 (967)
Q Consensus 915 ~~~~~l~~~p~~~~~ 929 (967)
+++++++.+|+|.-+
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 777777777777665
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00031 Score=70.65 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 855 DADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+.++.++..++..+...|++++|...+++++.. .|+...|..++.++...|++++|+..+++++.++|..+..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 446777877777777779999999999998875 3677777788888888899999999999999999988764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00019 Score=58.28 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+...+..++.+|...|++++|+..|+++++. .|+ ..++..++.+|...|++++|...|+++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667777888888888888888888888773 454 56777888888888888888888887764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00018 Score=58.90 Aligned_cols=69 Identities=7% Similarity=-0.066 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 861 YNFMINGLGRSGRIEEALSLFDEMKKRG------ISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 861 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+..++..+.+.|+++.|...++.+++.. -.+...++..|+.++.+.|++++|+.++++++.++|+++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3345555555555555555555544210 01123455555555555555555555555555555555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00012 Score=59.41 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=59.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRGISPDLY-TYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
..+..+...|++++|+..++++++. .+.+.. .+..++.++...|++++|+..++++++++|+++.+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT-EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4677889999999999999999974 344567 99999999999999999999999999999999986
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00037 Score=55.10 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 822 DLKSYSVLVDCLCMVGR---VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 822 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+...+..++.++...++ .++|..+++++++.+ +.+..++..++..+...|++++|+..|+++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555555543333 456666666666532 23445555566666666666666666666654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00026 Score=58.21 Aligned_cols=88 Identities=18% Similarity=0.093 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC-CH-HhHHHHHHHHHhcCCHHHHHH
Q 048794 840 DDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEE---ALSLFDEMKKRGISP-DL-YTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~g~~~~A~~ 914 (967)
..+.+.|.+....+ .++..+-..++++++++.+..+ ++.+++.+.+.+ .| +. +.++.|+-.+++.|+|++|.+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34445555555444 4667777777888877776555 777777776532 12 22 566777777888888888888
Q ss_pred hhcCCCcCCCCcccc
Q 048794 915 LAGGNCFVQPSEFVS 929 (967)
Q Consensus 915 ~~~~~l~~~p~~~~~ 929 (967)
+++.+|+.+|+|.-+
T Consensus 96 ~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHHhCCCCHHH
Confidence 888888888877665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00064 Score=71.86 Aligned_cols=85 Identities=6% Similarity=-0.105 Sum_probs=49.2
Q ss_pred cCCHHHHHHHHHHHHh---CCCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CC-CHHHHHHHHH
Q 048794 801 TGDVETACELFKQMIK---GGIRP---D-LKSYSVLVDCLCMVGRVDDALHYFEELKL-----NGL-DA-DTISYNFMIN 866 (967)
Q Consensus 801 ~~~~~~A~~~~~~~~~---~~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~~-~~~~~~~l~~ 866 (967)
.|++++|+.++++.++ .-+.| + ..++++|+.+|..+|++++|+.+++++++ .|. .| ....++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566666666666554 11122 2 24556666666666666666666666652 221 11 2345666777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048794 867 GLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~ 885 (967)
+|...|++++|..++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777777665
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0093 Score=60.02 Aligned_cols=74 Identities=14% Similarity=0.061 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 785 KPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYN 862 (967)
Q Consensus 785 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 862 (967)
+.+..+|..++..+...|++++|+..+++++.. .|+...+..++.++...|++++|.+.|.++... +|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 345667777776666678888888888888774 477767777788888888888888888887773 56666554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0015 Score=69.04 Aligned_cols=87 Identities=9% Similarity=-0.102 Sum_probs=67.4
Q ss_pred cCCCHHHHHHHHHHHHHC---CCCC---CH-HHHHHHHHHHhccCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDY---GCKP---NC-VIYNILINGFGKTGDVETACELFKQMIK-----GG-IRPD-LKSYSVLV 830 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~---~~~~---~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~l~ 830 (967)
..|++++|+.+++++++. -+.| +. .++++++.+|...|++++|+.+++++++ .| ..|+ ..++++|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457888999988888752 1122 22 3788999999999999999999999875 12 2344 36788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 048794 831 DCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~ 851 (967)
.+|..+|++++|..+|+++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999874
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0032 Score=66.71 Aligned_cols=89 Identities=10% Similarity=0.005 Sum_probs=53.0
Q ss_pred HHHcCCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHh-----C-CCCCC-HHHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYG---CKPN----CVIYNILINGFGKTGDVETACELFKQMIK-----G-GIRPD-LKSYS 827 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-~~~p~-~~~~~ 827 (967)
-+.+.|++++|+..++++++.. ..|+ ..+++.++.+|...|++++|+.++++++. . ...|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566777777776666421 1111 12566677777777777777777776654 1 12233 24566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048794 828 VLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
.|+.+|...|++++|..++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 67777777777777777777665
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0052 Score=52.73 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG---DVETACELFKQMIKGGIRP--DLKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 843 (967)
...+.+.|.+..+.+. ++..+...+++++++.+ +.++++.++++..+.+ .| ....++.|+-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3444445554444332 45555555555555555 3445555555555531 13 1344555555555555555555
Q ss_pred HHHHHHHH
Q 048794 844 HYFEELKL 851 (967)
Q Consensus 844 ~~~~~~~~ 851 (967)
++++.+++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.01 Score=56.95 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhc-C
Q 048794 839 VDDALHYFEELKLNGLDAD---TISYNFMINGLGRS-----GRIEEALSLFDEMKKRGISPD--LYTYNSLILNLGRA-G 907 (967)
Q Consensus 839 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~-g 907 (967)
..+|...++++++. +|+ ..+|..++..|... |+.++|.++|+++++ +.|+ ..++..++..+.+. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 44566666666663 343 34566666666663 677777777777665 3332 46666666666663 6
Q ss_pred CHHHHHHhhcCCCcCCCCc
Q 048794 908 MVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 908 ~~~~A~~~~~~~l~~~p~~ 926 (967)
++++|.+++++++..+|+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHHcCCCCC
Confidence 6777777777777666664
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0042 Score=65.85 Aligned_cols=89 Identities=12% Similarity=0.026 Sum_probs=70.2
Q ss_pred HHhccCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CC-CHHHHH
Q 048794 797 GFGKTGDVETACELFKQMIKG---GIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKL-----NGL-DA-DTISYN 862 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~~-~~~~~~ 862 (967)
-+...|++++|+.+++++++. -..|+ ..++++++.+|...|++++|+.++++++. .|. .| ....++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 345678999999999999862 12233 36788999999999999999999999874 221 11 345788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
.|+.+|...|++++|..++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 89999999999999999999987
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.034 Score=53.43 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 048794 804 VETACELFKQMIKGGIRPD---LKSYSVLVDCLCMV-----GRVDDALHYFEELKLNGLDADTISYNFMINGLGRS-GRI 874 (967)
Q Consensus 804 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 874 (967)
...|...++++++ +.|+ ..+|..++..|... |+.++|.++|+++++.+...+..++..+++.++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 5788888999988 6888 46889999999884 99999999999999853222477788889988884 999
Q ss_pred HHHHHHHHHHHHc
Q 048794 875 EEALSLFDEMKKR 887 (967)
Q Consensus 875 ~~A~~~~~~~~~~ 887 (967)
++|.+.+++++..
T Consensus 257 ~~a~~~L~kAL~a 269 (301)
T 3u64_A 257 AGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999964
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0067 Score=47.80 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 786 PNCVIYNILINGFGKTGD---VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 786 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.+...+..++.++...++ .++|..+++++++ ..|+ ..+...++..+...|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555443332 4666666666665 3444 455556666666666666666666666653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.013 Score=47.66 Aligned_cols=77 Identities=10% Similarity=0.067 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 048794 822 DLKSYSVLVDCLCMVGRVDDALHYFEELKLN---G---LDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYT 895 (967)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 895 (967)
+...+..+|..+...|+++.|..+|+.+++. + -.+...++..|+.++.+.|++++|...++++++. .|.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-DPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHH
Confidence 3445667777777777777777777777642 0 0123456777777777777777777777777753 2333344
Q ss_pred HHHH
Q 048794 896 YNSL 899 (967)
Q Consensus 896 ~~~l 899 (967)
...+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 4433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0054 Score=50.44 Aligned_cols=74 Identities=12% Similarity=-0.005 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 855 DADTISYNFMINGLGRSGR---IEEALSLFDEMKKRGISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.|++.+-..+++++.++.+ ..+++.+++.+.+.+ +.+ -+.+..|+-.+++.|+|++|.++.+.+|+.+|+|.-+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4566666666666666663 335666666666432 112 2556666666777777777777777777777776654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0057 Score=51.06 Aligned_cols=72 Identities=13% Similarity=-0.001 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 856 ADTISYNFMINGLGRSGR---IEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 856 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
|+..+-..+++++.++.+ ..+++.+++.+.+.+ +.+. +.++.|+-.+++.|+|++|.++.+.+|+.+|+|.-
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 444444445555544442 223444444444321 1112 44444455555555555555555555555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.046 Score=44.96 Aligned_cols=81 Identities=15% Similarity=0.057 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVET---ACELFKQMIKGGIRP--DLKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 843 (967)
+..+.+.|.+....| .++..+-..+++++.+.++... ++.+++.+.+.+ .| .....+.|+-.+.+.|+|++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444454444433 2455555555555555554433 555555555531 23 1244455555555555555555
Q ss_pred HHHHHHHH
Q 048794 844 HYFEELKL 851 (967)
Q Consensus 844 ~~~~~~~~ 851 (967)
++++.+++
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.018 Score=49.74 Aligned_cols=132 Identities=11% Similarity=0.011 Sum_probs=67.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHH
Q 048794 792 NILINGFGKTGDVETACELFKQMIKG-GIRPD-------LKSYSVLVDCLCMVGRVDDALHYFEELKLN--GLDADTISY 861 (967)
Q Consensus 792 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 861 (967)
..-+..+...+.++.|+-+.+.++.. +.+|+ ..++..++.++...|+|.+|...|++++.. .+.......
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33344456667777777776665432 12333 134566677777777777777777776531 111111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccceeee
Q 048794 862 NFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIY 936 (967)
Q Consensus 862 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~ 936 (967)
..++ ....... ....+.+.++-+.++.++.+.|++.+|+..++.+-...-.-..-..||.+|
T Consensus 104 ~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 104 PSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 1010 0000000 001333456777788888888999999988887654433332224555555
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.74 E-value=1.6e-05 Score=80.65 Aligned_cols=140 Identities=12% Similarity=0.176 Sum_probs=86.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 048794 401 DVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480 (967)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (967)
.+.+|+.|+.+....+...+|++.|-+.. |+..|..++....+.|.+++-...+....+.. -++.+=..|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 34567777777777777777766653322 44456677777777888887777776665542 23333446677
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHH
Q 048794 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDA 560 (967)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 560 (967)
+|.+.++..+-.+++ . .|+..-...++..+...|.++.|.-+|..+. .+..|+..+...|++..|
T Consensus 125 ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~is--------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC--------CCTTTSSSSSSCSGGGSS
T ss_pred HHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCc--------cHHHHHHHHHHHHHHHHH
Confidence 777777755432221 1 2455555667777778888877766664433 345566666777777766
Q ss_pred HHH
Q 048794 561 FRL 563 (967)
Q Consensus 561 ~~~ 563 (967)
++.
T Consensus 190 Vda 192 (624)
T 3lvg_A 190 VDG 192 (624)
T ss_dssp TTT
T ss_pred HHH
Confidence 554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.27 Score=57.95 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=58.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC
Q 048794 687 NLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS 766 (967)
Q Consensus 687 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 766 (967)
..++..+.+.|.+++|+.+.+ +.. .-.......|++++|.++.+. ..+...|..++..+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHc
Confidence 455566677777777765542 111 113344567788887777542 23456777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACEL 810 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 810 (967)
|+++.|++.|.++.+ |..+...|...|+.+....+
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 888888888887653 12334444456665554433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=1.2 Score=47.33 Aligned_cols=170 Identities=14% Similarity=0.063 Sum_probs=105.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCCH--H
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGC-KPN----CVIYNILINGFGKTGDVETACELFKQMIK----GGIRPDL--K 824 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~~--~ 824 (967)
...++..|...|++.+|.+++..+...-. ..+ ...+...+..|...+++.+|..+++++.. ....|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 45688999999999999999999864311 112 22667778889999999999999998742 2222332 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLN-GLDADTI----SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSL 899 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 899 (967)
.+...+..+...++|.+|.+.|.++.+. ....++. +...++....-.+....-.++..+......-++...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 4567788889999999999999988642 1111222 1222222222222112222223333221122334567777
Q ss_pred HHHHHhc--CCHHHHHHhhcCCCcCCCC
Q 048794 900 ILNLGRA--GMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 900 ~~~~~~~--g~~~~A~~~~~~~l~~~p~ 925 (967)
..++... .+++...+.++..+.-+|-
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred HHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 7777654 5789999999988766654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.26 Score=41.50 Aligned_cols=112 Identities=5% Similarity=0.114 Sum_probs=66.9
Q ss_pred ChhhHHHHHHHHHhcCcH------HHHHHHHHHHHHcCCCCCHh-hHHHHHHH------HHccCCHHHHHHHHHHHHHcC
Q 048794 51 NAYSYNGFIHFILQSGFC------REALAVYKRVVSEGIKPSLK-TYSALMVA------AGKRRNIKTVMNLLEEMERLG 117 (967)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~ 117 (967)
++.+|-..+..+-+.|++ +..+++|++.... ++|+.. .+...+.. +...++.++|+++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 666776777777666777 6677777777664 445431 11111110 123367777777777776554
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048794 118 LRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLID 165 (967)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 165 (967)
-.. ..+|...++.-.++|+++.|.+++.+....+. .+.......++
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~-k~~~~le~a~~ 136 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA-VPLEMLEIALR 136 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BCHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-CcHHHHHHHHH
Confidence 333 66677777777778888888888877776653 23334444333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.45 Score=39.00 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=97.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhH
Q 048794 237 LCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKA 316 (967)
Q Consensus 237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 316 (967)
+.-.|.+++..+++.+..+. .+..-+|.++.-....-+-+-..++++..-+. +. ...+|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FD------------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FD------------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SC------------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-cC------------cHhhhcHHHH
Confidence 34568888888888877664 36777888887777777777777777765432 11 1234444444
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048794 317 LETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVEN 396 (967)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 396 (967)
...+-.+-. +.......+..+...|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.
T Consensus 81 i~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 444433321 4455666777888889888888888886442 3677888888889999999999999999888887
Q ss_pred CCC
Q 048794 397 GCE 399 (967)
Q Consensus 397 ~~~ 399 (967)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 743
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.34 E-value=1.1 Score=39.64 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=86.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 048794 22 TIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRR 101 (967)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (967)
+-|....+.|+++.|.++.+.+ .+...|..|......+|+++-|..+|.+..+ +..+.-.+.-.|
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg 74 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTG 74 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhC
Confidence 3456667888888888776655 2678888888888888888888888877642 344445566677
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048794 102 NIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFL 181 (967)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 181 (967)
+.+...++-+.....| -++.....+...|+++++.++|.+... .|.. +......|..+.|.++.+
T Consensus 75 ~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLE 139 (177)
T ss_dssp CHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHH
Confidence 7777776666665544 134455567778888888888866432 1111 111122455666777766
Q ss_pred HH
Q 048794 182 KM 183 (967)
Q Consensus 182 ~~ 183 (967)
++
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 65
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.29 Score=57.64 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=103.9
Q ss_pred HHHccCChHHHHH-HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHH
Q 048794 692 GYGKSGRVEELLK-LYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLE 770 (967)
Q Consensus 692 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 770 (967)
.....+++++|.+ ++..+ + +......++..+...|..++|+...+. .. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHH
Confidence 3345688888866 44111 1 122235666777788888888866521 11 1133456789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 771 EAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 771 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
+|.++.+.+ .+...|..++..+.+.++++.|++.|.++.+ +..+..++...|+.+...++.+.+.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 999885432 3678999999999999999999999998743 2223333333444444333333333
Q ss_pred HCCCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHH
Q 048794 851 LNGLDADT-I-------SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL----YTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 851 ~~~~~~~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 913 (967)
..+ ..+. . -+...+++|.+.|++++|..+-+.. .|.. .+...+...+...|+...|.
T Consensus 735 ~~~-~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~-----~~~~~~i~~~~~~~~~~L~~~~~~~~a~ 803 (814)
T 3mkq_A 735 TTG-KFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTY-----GLGDNEVNDIVTKWKENLILNGKNTVSE 803 (814)
T ss_dssp HTT-CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHTTTCHHHHT
T ss_pred HcC-chHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHhccchhHHH
Confidence 221 0000 0 0112334455566666665554432 2233 55566666666777654443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.16 Score=42.71 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIR 820 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 820 (967)
++.++|.++|+.+++.+ +.=..+|...+..-.++|+..+|.+++.+.+..+..
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55666666666665432 212445655566566666666666666666664433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.46 Score=39.76 Aligned_cols=72 Identities=8% Similarity=-0.009 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 820 RPDLKSYSVLVDCLCMVGR---VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 820 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
.|+..+-+.+++++.++.+ ..+++.+++.....+......++..|+-.+++.|++++|.++.+.+++ ++|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4555566666666666554 234556666555432112334555566666666666666666666664 44543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.23 Score=41.00 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 820 RPDLKSYSVLVDCLCMVGRV---DDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 820 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
.|+..+-..+++++.++.+. .+++.+++.....+..-...++..|+-++.+.|++++|.++.+.+++ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 45555666666666655542 34556665555432111344555566666666666666666666664 44443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.0001 Score=74.96 Aligned_cols=266 Identities=12% Similarity=0.107 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhh
Q 048794 506 DVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVG 585 (967)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (967)
.+.+|..++.++...+++.+|++.|= ...|+..+...+.+..+.|.+++-++++..+.+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI-----kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--------------- 112 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI-----KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--------------- 112 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC-----CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---------------
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH-----hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------
Confidence 45567778888888888887777652 2345556666777777777777777776643221
Q ss_pred hhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 048794 586 GILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATE 665 (967)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 665 (967)
..++.+-..++..|.+.++..+-.+++ ..++..-...++.-|...|.++
T Consensus 113 -----------------------~ke~~IDteLi~ayAk~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYe 161 (624)
T 3lvg_A 113 -----------------------ARESYVETELIFALAKTNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYD 161 (624)
T ss_dssp -----------------------CCSTTTTHHHHHHHHTSCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCST
T ss_pred -----------------------hcccccHHHHHHHHHhhCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHH
Confidence 233334445666666666554433322 1122222344556666666666
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 666 MGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLV 745 (967)
Q Consensus 666 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 745 (967)
.|.-+|..+- -|..|+..+.+.|++..|++.-++ ..+..+|..+..+|...+++.-|.-.--.++
T Consensus 162 AAKilys~is---------N~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniI 226 (624)
T 3lvg_A 162 AAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV 226 (624)
T ss_dssp TSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH
T ss_pred HHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhc
Confidence 6655543222 233455566677777777655333 2366789999999999999988876666655
Q ss_pred hCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---
Q 048794 746 SGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD--- 822 (967)
Q Consensus 746 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--- 822 (967)
-. ++ -+..++..|...|.+++-+.+++..+... ......+..|+-.|++- ++++-.+.++-....=.-|.
T Consensus 227 vh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvir 299 (624)
T 3lvg_A 227 VH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLR 299 (624)
T ss_dssp CC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHH
T ss_pred cc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHH
Confidence 43 11 22345677899999999999999988542 45677899999999876 55666666554333211232
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHH
Q 048794 823 ----LKSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 823 ----~~~~~~l~~~~~~~g~~~~A~~ 844 (967)
...|.-+...|.+..++|.|..
T Consensus 300 acE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 300 AAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2246667777777777776543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.69 E-value=2 Score=37.88 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=74.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 048794 130 RILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIE 209 (967)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 209 (967)
......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|..... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4556889999999888776 2678899999999999999999999988753 345556667778887
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 210 VVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLM 253 (967)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (967)
....+-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 7776665554443 1344445566678888888887554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.66 E-value=2 Score=44.01 Aligned_cols=27 Identities=7% Similarity=-0.186 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048794 649 EMYNYLIHGLLEVHATEMGLDLFTTMK 675 (967)
Q Consensus 649 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 675 (967)
.+...++..|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556666666666666655555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.72 Score=37.85 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=24.2
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQM 814 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 814 (967)
.-.|..++..++..+.... .+..-+|+.+--....-+.+--.++++..
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I 65 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI 65 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH
Confidence 3356667777777666652 23334444443333444444444444444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.51 E-value=14 Score=42.64 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHH
Q 048794 700 EELLKLYEEMSFRGCKPNTI----SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKL 775 (967)
Q Consensus 700 ~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 775 (967)
+++.+.+..++... +.. +-.+++..+.-.|+.+-...++..+.+.. +.+..-...++-++...|+.+.+..+
T Consensus 471 eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 471 IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 45556666655432 211 22233344445566555555555554431 11111222233334456677777767
Q ss_pred HHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 048794 776 FEEMLDYGCKPNCVI----YNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYS--VLVDCLCMVGRVDDALHYFEEL 849 (967)
Q Consensus 776 ~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 849 (967)
++.+... .+..+ -..++.+|+..|+.....+++..+.+. ++..+.. .++-.+...|+.+.+.+++...
T Consensus 547 i~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 547 ITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp HHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 6666652 23332 223444566777755444466666652 3322222 2222233345544444544433
Q ss_pred HHCCCCCCHHHHHHHHHHHH--hcCC-HHHHHHHHHHHH
Q 048794 850 KLNGLDADTISYNFMINGLG--RSGR-IEEALSLFDEMK 885 (967)
Q Consensus 850 ~~~~~~~~~~~~~~l~~~~~--~~g~-~~~A~~~~~~~~ 885 (967)
.+. .++.+....+.+++ ..|. ..++++.+..+.
T Consensus 621 ~~~---~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 621 SKS---HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp GGC---SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred Hhc---CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 332 23333333333322 2222 256666666665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.16 E-value=15 Score=42.23 Aligned_cols=55 Identities=9% Similarity=0.019 Sum_probs=28.8
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCCCCHH--HHHHHHHHHhhcCcHhHHHHHHHHHHh
Q 048794 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVL--TYNTIIYGLVKEQRVKDAIWFFHQMRK 535 (967)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (967)
+....|+.++++.++...+..+...+.. .-..++-+....|...++..++.....
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~ 439 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIV 439 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Confidence 4556677777777777776532111222 222233334455555566666665543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.83 E-value=18 Score=39.88 Aligned_cols=200 Identities=10% Similarity=-0.019 Sum_probs=109.8
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHH
Q 048794 697 GRVEELLKLYEEMSFRGCKPNTISHNIVIS----GLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 772 (967)
.+.+.|...+....... ..+......+-. .....+...++...+.+......... ...-.+..-.+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS--LIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH--HHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH--HHHHHHHHHHHCCCHHHH
Confidence 47889999998876543 223332222222 22233435566666666554422222 222223333456899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 773 KKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
...|+.+.... .........++.++...|+.++|..+|.++... . +|+.+... .+.|..-. ... .
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~-~~~------~ 369 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYE-LKI------D 369 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCC-CCC------C
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCC-CCC------C
Confidence 99998876531 123445677788888889999999999988751 1 34433321 22232100 000 0
Q ss_pred CCCC--C-H-H--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhc
Q 048794 853 GLDA--D-T-I--SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAG 917 (967)
Q Consensus 853 ~~~~--~-~-~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 917 (967)
...+ . . . .....+..+...|....|...+..+.+. . +..-...++......|.+..++....
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0011 0 0 0 1122345677888888888888887742 2 33334456666677777777765544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.35 E-value=1.3 Score=38.35 Aligned_cols=63 Identities=8% Similarity=0.026 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhcCcHhHHHHHHHHHHhhc--CCC-------hhHHHhHHHHHHhcCChhHHHHHHHHHHhh
Q 048794 508 LTYNTIIYGLVKEQRVKDAIWFFHQMRKWL--YPD-------HITLCTLLPGVVKDGQIEDAFRLAKCSIYQ 570 (967)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 570 (967)
..+..-+..+...|.++.|+.+...+.... .++ ..++..++.+++..++|-.|...|++++..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 344455666777888888887777765432 222 125677778888888888888888877654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.57 E-value=19 Score=37.94 Aligned_cols=258 Identities=12% Similarity=0.063 Sum_probs=144.7
Q ss_pred hccHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH----HHHcc
Q 048794 625 QKKALAAKDLFVKFTENLG----VTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLD----GYGKS 696 (967)
Q Consensus 625 ~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 696 (967)
.+++..|.+.+..+.+... ......+...++..|...++++...+.+.-+.+..... ..+...+++ .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 4778888887766654432 34456677888888999999988877776555431111 111222222 22222
Q ss_pred CChHHHHH--HHHHHHhCCCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhcHHHHHH
Q 048794 697 GRVEELLK--LYEEMSFRGCKPNT--------ISHNIVISGLVKSNSIDKAMDLFYNLVSG--GFSPT---PCTYGPLID 761 (967)
Q Consensus 697 g~~~~A~~--~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~ 761 (967)
...+.... +...... ..... .....+...+...|++.+|.+++..+... +..+. ...+...+.
T Consensus 108 ~~~d~~~~~~~i~~l~~--vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRV--VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHHHHHHHCCSS--SSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332111 1111111 11111 12356778888999999999999887654 22221 245667788
Q ss_pred HHHcCCCHHHHHHHHHHHH----HCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHH----HHHHHH
Q 048794 762 GLSKSGRLEEAKKLFEEML----DYGCKPNCV--IYNILINGFGKTGDVETACELFKQMIKG-GIRPDLK----SYSVLV 830 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~----~~~~l~ 830 (967)
.|...+++..|..+++++. .....|+.. .+...+..+...++|.+|-..|..+.+. ....+.. +...++
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 8999999999999998874 222222322 4566677788889999999988888652 0111221 222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS--GRIEEALSLFDEMK 885 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~ 885 (967)
.+..-.+...+--.+..+......-++...+..+..+|... .++....+.|...+
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 22222222222223333332211123456677788887654 36777777666544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.27 E-value=1.4 Score=49.42 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048794 125 FTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMK 184 (967)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 184 (967)
...-...+...|+++-|+++-++....- |.+-.+|..|..+|+..|+++.|+-.+..+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3444555666777777777777776652 4456677777777777777777777777653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=27 Score=38.49 Aligned_cols=197 Identities=12% Similarity=0.012 Sum_probs=109.8
Q ss_pred hcCCHHHHHHHHHHHHhCC-CCCCh--hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 048794 730 KSNSIDKAMDLFYNLVSGG-FSPTP--CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVET 806 (967)
Q Consensus 730 ~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 806 (967)
...+.+.|...+....... ..+.. .....++......+...++...+.+.... ..+.......+....+.|+++.
T Consensus 226 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHH
Confidence 3447889999998876542 22211 12223333444455456777777776653 3344434444444456799999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 807 ACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 807 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
|...|+.+... ........+.++.++...|+.++|..+|+++... .+ .|-.++ ..+.|..-. .. . .
T Consensus 304 a~~~~~~l~~~-~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA--a~~Lg~~~~-~~----~-~ 369 (618)
T 1qsa_A 304 LNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGEEYE-LK----I-D 369 (618)
T ss_dssp HHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTCCCC-CC----C-C
T ss_pred HHHHHHHcccc-ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--HHHcCCCCC-CC----C-C
Confidence 99999887652 1123556788899999999999999999998752 22 233232 123332100 00 0 0
Q ss_pred cCCCCCH------HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccceeeeccCCCccc
Q 048794 887 RGISPDL------YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIYAENPRATS 944 (967)
Q Consensus 887 ~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~~~~g~~~~ 944 (967)
..++.. .-...-+..+...|...+|...+..+....+ ......++.+....|.++.
T Consensus 370 -~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~-~~~~~~la~~a~~~~~~~~ 431 (618)
T 1qsa_A 370 -KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS-KTEQAQLARYAFNNQWWDL 431 (618)
T ss_dssp -CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHTTCHHH
T ss_pred -CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCChHH
Confidence 011110 0112345568888999999888776654321 1111345555555555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.45 E-value=1 Score=50.57 Aligned_cols=55 Identities=16% Similarity=0.010 Sum_probs=45.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQM 814 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 814 (967)
.-++.+...|+++.|+++-+++... .| +..+|..|+.+|...|+++.|+-.++.+
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456677889999999999999885 44 4569999999999999999999988876
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=88.32 E-value=15 Score=33.73 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 786 PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMI 865 (967)
Q Consensus 786 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 865 (967)
++..+....+.++...++ .+++..+.++++ .|+..+....+.++...|.. ++...+..++. +++..+....+
T Consensus 93 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGD-ERAVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-HHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 444444444445544444 334555555543 45555555555555555543 34444444442 34555555556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 048794 866 NGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA 906 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 906 (967)
.++.+.|. .++...+..+++ .++..+-.....++...
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC-
T ss_pred HHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhc
Confidence 66666665 455555555553 23444444444444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.87 E-value=26 Score=35.86 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=17.7
Q ss_pred hHHHHHHhcCChhHHHHHHHHHHhhc
Q 048794 546 TLLPGVVKDGQIEDAFRLAKCSIYQI 571 (967)
Q Consensus 546 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 571 (967)
.++..|...|++.+|.+.+.+.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~ 129 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLREL 129 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 56677777777777777777655543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=3.4 Score=42.83 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELK-----LNGLDADTISY 861 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 861 (967)
+...++..+...|++++|+..+.+++.. .| +...+..++.+|.+.|+..+|++.|+... +.|+.|++.+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4445555566666667766666666652 34 35566666666666677777666666543 24666666543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.23 E-value=25 Score=34.86 Aligned_cols=190 Identities=14% Similarity=0.054 Sum_probs=103.8
Q ss_pred CChhHHHHHHHHHHHcCCC---CCh-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHH
Q 048794 31 GGLRRASFALEKMRAAGFV---LNA-YSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTV 106 (967)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~---~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (967)
++.++.++-++.-++.|.. ... ..+.++..-|+++++|.+|++++-.-. ..+.+.|+...+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg 74 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSG 74 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchH
Confidence 4455555555555555532 222 456677777888899998888765432 234455666555
Q ss_pred HHHH----HHHHHcCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CC--CCCCHHHHHHHHHHHHhcCChHH
Q 048794 107 MNLL----EEMERLGLRPNVYTFTICIRILGRAGKIDE-AYRILKRMDD----EG--CGPDVVTYTVLIDALCTAGRLDQ 175 (967)
Q Consensus 107 ~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~ 175 (967)
.++. +-..+.+++++......++..+.....-+. =.++.+++.+ .| ..-+......+...+.+.+++.+
T Consensus 75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~ 154 (336)
T 3lpz_A 75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEA 154 (336)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 5544 444456777777777777777765543221 1222222221 11 23466777788888888888888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 176 AKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMR 254 (967)
Q Consensus 176 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 254 (967)
|...|- . +..+....+..++.-+...+... +.+...-. .+-.|...+++..|..+++...
T Consensus 155 Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 155 AEKHLV--L--GTKESPEVLARMEYEWYKQDESH--------------TAPLYCAR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH--h--cCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 877762 2 22333345544444333332211 11222222 2333556777777777665544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.47 E-value=1.8 Score=40.99 Aligned_cols=123 Identities=16% Similarity=0.094 Sum_probs=77.6
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048794 797 GFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIE 875 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 875 (967)
...+.|++++|++....-++. .| |......+...+|-.|+++.|.+.++...+. .|+...-.. .|. +.-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~---~yr---~lI 75 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGAS---QLR---HLV 75 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHH---HHH---HHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHH---HHH---HHH
Confidence 356778899999988888885 45 4667778888888899999999998888774 454332111 111 112
Q ss_pred HHHHHHHHHHHcCCCC----CHHhH-HHHHHHHH--hcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 876 EALSLFDEMKKRGISP----DLYTY-NSLILNLG--RAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 876 ~A~~~~~~~~~~~~~~----~~~~~-~~l~~~~~--~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.|+..-..+...+-.| ++.-| ..++.++. ..|+.++|..+-.++++..|..+..
T Consensus 76 ~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 76 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 2233333333322222 22223 34444444 4599999999999998888887774
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.41 E-value=30 Score=34.04 Aligned_cols=26 Identities=23% Similarity=0.060 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 822 DLKSYSVLVDCLCMVGRVDDALHYFE 847 (967)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 847 (967)
+...+..++..|.+.|++.+|..+|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56778888889999999999888874
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.14 E-value=12 Score=39.37 Aligned_cols=98 Identities=10% Similarity=-0.071 Sum_probs=62.6
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHh---CCCCCCHH--HH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN--CVIYNILINGFGKTGDVETACELFKQMIK---GGIRPDLK--SY 826 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~p~~~--~~ 826 (967)
.++..++..|.+.|+++.|.+.|.++......+. ...+..++.++...+++..+...++++.. .+..|+.. ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566778888888888888888888776422222 23566667777777888888888877653 23233322 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
..-+.++...++|.+|...|-.+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 2234445567788888877777664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.56 E-value=5.8 Score=41.07 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=47.9
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK-----GGIRPDLKS 825 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~ 825 (967)
+...++..+...|++++|+..+..+.... +-+...|..++.++...|+..+|++.|+++.+ .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455666777778888877777777653 33666777777777778888888877777643 367776543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=83.30 E-value=27 Score=31.97 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=89.0
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
+...-...+..+...|. .+++..+.++.. .++.......+.++...++. ++...+.+++. .++..+-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-ccHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 44333334444444444 234444444443 23554555555555555542 34444444443 344445555556
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDD 841 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 841 (967)
++.+.|+. ++...+.++++ .++..+....+.++...+. .+++..+.++++ .|+..+....+.++...+. .+
T Consensus 104 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 104 ALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGD-ERAVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 66666653 34555555554 4566666666666666555 456666666664 4666666666677776665 45
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048794 842 ALHYFEELKLNGLDADTISYNFMINGLGRS 871 (967)
Q Consensus 842 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 871 (967)
+...+..++. .+++.+......++...
T Consensus 175 ~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 175 VRAAMEKLAE---TGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHH---HCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHhc
Confidence 6666666665 23444444444444433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.87 E-value=5.5 Score=30.78 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 048794 419 DEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480 (967)
Q Consensus 419 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (967)
=+..+-++.+...++.|++....+.+.+|.+-+++..|.++++-...+ +.+...+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 345555666666667777777777777777777777777777776654 2333344554443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.78 E-value=43 Score=33.15 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048794 821 PDLKSYSVLVDCLCMVGRVDDALHYF 846 (967)
Q Consensus 821 p~~~~~~~l~~~~~~~g~~~~A~~~~ 846 (967)
-+......++..|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35677778888888888888888887
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=81.53 E-value=40 Score=32.63 Aligned_cols=29 Identities=7% Similarity=-0.224 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLDLFTTMKN 676 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 676 (967)
+......-+..+...+. .++...+..+++
T Consensus 36 ~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~ 64 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGG-QDAVRLAIEFCS 64 (280)
T ss_dssp SHHHHHHHHHHHHHHCC-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCC-chHHHHHHHHHc
Confidence 33333333444444442 334444444443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.27 E-value=21 Score=43.37 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 048794 652 NYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS 731 (967)
Q Consensus 652 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 731 (967)
..++..+...+.++-+.++. ... +.+...-..++.++...|++++|..+|+++.. ++..+....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~-~~~----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~---------- 879 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLI-GWL----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHH-HHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------
T ss_pred HHHHHHHHHhhhHHHHHHHh-hhc----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------
Confidence 34555566777776665433 222 23444456778888889999999999987643 222221110
Q ss_pred CCHHHHHHHHHHHHhCC--CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHH
Q 048794 732 NSIDKAMDLFYNLVSGG--FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC----VIYNILINGFGKTGDVE 805 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 805 (967)
..... +..+.... ......-|..++..+.+.|.++.++++-+.+++...+.+. ..|..+...+...|+++
T Consensus 880 ~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye 955 (1139)
T 4fhn_B 880 AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFD 955 (1139)
T ss_dssp SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSG
T ss_pred hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHH
Confidence 00000 11112211 1122345677888899999999999998888764322222 26788888899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 806 TACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDD 841 (967)
Q Consensus 806 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 841 (967)
+|...+..+.... --...+..|+..++..|..++
T Consensus 956 ~Ay~aL~~~pd~~--~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 956 AAHVALMVLSTTP--LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GGGHHHHHHHHSS--SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHhCCCHH--HHHHHHHHHHHHHHhCCChhh
Confidence 9999998887632 234566667666666665443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.09 E-value=44 Score=32.82 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=80.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHH-
Q 048794 32 GLRRASFALEKMRAAGFVLNA-YSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNL- 109 (967)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~- 109 (967)
++++.+.-++.-.+.|..... ..+.++..-|.+++++++|++++..-.. .+.+.|+...+.++
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLI 76 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHH
Confidence 556666666666665532222 4566777778888888888887655422 24556666665554
Q ss_pred ---HHHHHHcCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 048794 110 ---LEEMERLGLRPNVYTFTICIRILGRAGKID-EAYRILKRMD----DEG--CGPDVVTYTVLIDALCTAGRLDQAKEI 179 (967)
Q Consensus 110 ---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 179 (967)
++-..+.+++++......++..+.....-+ .=.++++++. +.| ...+...+..+...+.+.|++.+|...
T Consensus 77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 444445577777777777776665543211 1122222222 111 123667778888888888888888776
Q ss_pred HH
Q 048794 180 FL 181 (967)
Q Consensus 180 ~~ 181 (967)
|-
T Consensus 157 ~i 158 (312)
T 2wpv_A 157 FM 158 (312)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 967 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 2e-07
Identities = 35/179 (19%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLF 741
+ Y L + ++ + + Y + N+ + ID A+D +
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV-YYEQGLIDLAIDTY 260
Query: 742 YNLVSGGFSPT-PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK 800
+ P P Y L + L + G + EA+ + L C + N L N +
Sbjct: 261 RRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKRE 317
Query: 801 TGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEE-LKLNGLDAD 857
G++E A L+++ ++ + P+ ++S L L G++ +AL +++E ++++ AD
Sbjct: 318 QGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 41.6 bits (97), Expect = 3e-04
Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 6/121 (4%)
Query: 765 KSGRLEEAKKLFEEMLDYGCKPNCV-IYNILINGFGKTGDVETACELFKQMIKGGIRP-D 822
G+L++A +L E + P + + I GD E A E Q IK + P
Sbjct: 8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEY 63
Query: 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFD 882
L S L + D K+ G + + N S E+ L
Sbjct: 64 LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 123
Query: 883 E 883
+
Sbjct: 124 Q 124
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 967 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.74 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.42 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.38 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.38 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.34 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.33 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.29 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.28 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.26 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.19 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.13 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.08 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.05 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.02 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.92 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.87 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.86 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.85 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.84 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.83 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.81 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.74 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.71 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.62 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.6 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.58 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.56 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.52 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.51 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.44 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.4 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.4 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.24 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.22 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.18 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.04 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.93 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.92 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.79 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.76 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.76 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.72 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.71 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.29 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.17 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.97 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.37 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.32 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.56 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.16 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.68 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.24 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.7e-25 Score=238.49 Aligned_cols=381 Identities=15% Similarity=0.081 Sum_probs=275.5
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChh
Q 048794 479 LHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIE 558 (967)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 558 (967)
...+.+.|++++|.+.++++++.. +.+...+..++..+...|++++|+..|+++.+..|.+..++..++..+...|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 334445555555555555555443 2244455555555555566666666666555555555555555555555555555
Q ss_pred HHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHH
Q 048794 559 DAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKF 638 (967)
Q Consensus 559 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 638 (967)
+|++.+..+....
T Consensus 85 ~A~~~~~~~~~~~------------------------------------------------------------------- 97 (388)
T d1w3ba_ 85 EAIEHYRHALRLK------------------------------------------------------------------- 97 (388)
T ss_dssp HHHHHHHHHHHHC-------------------------------------------------------------------
T ss_pred ccccccccccccc-------------------------------------------------------------------
Confidence 5555555443322
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh
Q 048794 639 TENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT 718 (967)
Q Consensus 639 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 718 (967)
+................+....+........... .................+....+...+.+..... +.+.
T Consensus 98 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 169 (388)
T d1w3ba_ 98 ------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFA 169 (388)
T ss_dssp ------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCH
T ss_pred ------cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-cchh
Confidence 1222222233333334444444444444444332 2334444455556677788888888887777653 4455
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 719 ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGF 798 (967)
Q Consensus 719 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (967)
..+..++..+...|++++|...+++++... +.+..++..++.++...|++++|+..+++..... +.+...+..++.++
T Consensus 170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 247 (388)
T d1w3ba_ 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHH
Confidence 677788888888999999999998888763 4456678889999999999999999999998864 34667888899999
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048794 799 GKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEA 877 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 877 (967)
...|++++|+..|+++++ ..|+ ..++..++.++...|++++|.+.++.+.... +.+...+..++.++...|++++|
T Consensus 248 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 324 (388)
T d1w3ba_ 248 YEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHH
Confidence 999999999999999998 4666 6789999999999999999999999998753 56778889999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCC
Q 048794 878 LSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPR 941 (967)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~ 941 (967)
+..++++++. .|.+..++..++.++...|++++|+..++++++++|+++.+ ..||.+|.++||
T Consensus 325 ~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 325 VRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999864 34456889999999999999999999999999999999988 699999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.6e-22 Score=216.65 Aligned_cols=382 Identities=13% Similarity=0.063 Sum_probs=267.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcH
Q 048794 444 LSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRV 523 (967)
Q Consensus 444 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 523 (967)
...+.+.|++++|++.++++.+.. |.+..++..+..++...|++++|...++++++.+ +.+..++..++..+...|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 344556677777777777766642 3356666666777777777777777777776654 23556677777777777777
Q ss_pred hHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHH
Q 048794 524 KDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKL 603 (967)
Q Consensus 524 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (967)
++|+..+..+.+..+.+..............+....+...........
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 131 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-------------------------------- 131 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--------------------------------
Confidence 777777777777666666666555555554444444433333221111
Q ss_pred HhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 048794 604 VCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDI 683 (967)
Q Consensus 604 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 683 (967)
.................+....+...+....... +.+.
T Consensus 132 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 169 (388)
T d1w3ba_ 132 -----------------------------------------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFA 169 (388)
T ss_dssp -----------------------------------------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCH
T ss_pred -----------------------------------------cccccccccccccccccchhhhhHHHHHHhhccC-cchh
Confidence 1222223333344455566666666666666543 2345
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHH
Q 048794 684 STYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGL 763 (967)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 763 (967)
..+..++..+...|++++|...+++++... +.+..++..++.++...|++++|+..+++..... +.....+..++.++
T Consensus 170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 247 (388)
T d1w3ba_ 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHH
Confidence 666777778888888888888888877764 3355677778888888888888888888877753 34455677788888
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 843 (967)
.+.|++++|+..|+++++.. +.+..+|..++.++...|++++|++.++.+... .+.+...+..++.++...|++++|+
T Consensus 248 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 325 (388)
T d1w3ba_ 248 YEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHH
Confidence 88889999999998888763 235668888888888889999999999888774 2334677888888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCC
Q 048794 844 HYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-LYTYNSLILNLGRAGM 908 (967)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 908 (967)
..|+++++.. +.+..++..++.+|...|++++|+..|+++++ +.|+ ..++..++.+|.+.||
T Consensus 326 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 326 RLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 9999888753 33677788889999999999999999998886 4454 5888888888888775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4e-17 Score=168.55 Aligned_cols=259 Identities=11% Similarity=-0.002 Sum_probs=162.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 048794 653 YLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSN 732 (967)
Q Consensus 653 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 732 (967)
..+..+.+.|++++|+..|+++++.. +.+..+|..++.++...|++++|+..|.++.... +.+...+..++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34444555555666666555555543 1234455555555555555555555555555543 223444555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 048794 733 SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFK 812 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 812 (967)
++++|.+.++++....+.... ........ .. ..+..........+...+.+.+|...|.
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~-----------------~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAH-LVTPAEEG-----------------AG---GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGG-GCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHH-HHHhhhhh-----------------hh---hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 555555555555543211100 00000000 00 0000011112222344567788999999
Q ss_pred HHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048794 813 QMIKGG-IRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP 891 (967)
Q Consensus 813 ~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 891 (967)
++++.. ..++..++..++.++...|++++|+..+++++... +.+..++..++.+|...|++++|++.++++++. .|.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH-hhc
Confidence 988732 12246778899999999999999999999998753 446788999999999999999999999999974 344
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeee
Q 048794 892 DLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIY 936 (967)
Q Consensus 892 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~ 936 (967)
+..++..++.++...|++++|+..++++++++|++... ..++.++
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 284 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 284 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHH
Confidence 56899999999999999999999999999999999886 3444433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=4e-15 Score=153.23 Aligned_cols=280 Identities=12% Similarity=0.027 Sum_probs=204.4
Q ss_pred CcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 048794 612 DSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLD 691 (967)
Q Consensus 612 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 691 (967)
.......+..+.+.|++++|...|+++++. .|.+..++..++..+...|++++|+..|.+.++..+ .+...+..++.
T Consensus 19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~ 95 (323)
T d1fcha_ 19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAV 95 (323)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccc
Confidence 344567899999999999999999999875 366788999999999999999999999999998753 36778889999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHH
Q 048794 692 GYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEE 771 (967)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 771 (967)
.+...|++++|++.++++.... |+............. .............+...+.+.+
T Consensus 96 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 96 SFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHH
T ss_pred cccccccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHH
Confidence 9999999999999999998863 332211000000000 0000001111223344456778
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 772 AKKLFEEMLDYGCK-PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEEL 849 (967)
Q Consensus 772 A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 849 (967)
|...+.++++..+. .+..++..++.++...|++++|+..|++++.. .|+ ..++..++.++...|++++|.+.|+++
T Consensus 155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 232 (323)
T d1fcha_ 155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRA 232 (323)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHH
Confidence 88888888765322 35667888888899999999999999998873 565 678889999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------------HHhHHHHHHHHHhcCCHHHHHHhhc
Q 048794 850 KLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD------------LYTYNSLILNLGRAGMVEEARKLAG 917 (967)
Q Consensus 850 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~ 917 (967)
++.+ +.+..++..++.+|.+.|++++|+..|+++++. .|+ ..+|..+..++...|+.+.+.....
T Consensus 233 l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~ 309 (323)
T d1fcha_ 233 LELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 309 (323)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8753 346778888999999999999999999998852 222 1345666667777777665555544
Q ss_pred CCC
Q 048794 918 GNC 920 (967)
Q Consensus 918 ~~l 920 (967)
+.+
T Consensus 310 ~~l 312 (323)
T d1fcha_ 310 RDL 312 (323)
T ss_dssp TCH
T ss_pred hCH
Confidence 433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.9e-13 Score=134.99 Aligned_cols=222 Identities=13% Similarity=0.076 Sum_probs=173.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 719 ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG-RLEEAKKLFEEMLDYGCKPNCVIYNILING 797 (967)
Q Consensus 719 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 797 (967)
.++..+..++.+.+.+++|+..++++++.+ |.+..+|...+.++...| ++++|+..++++++.. +.+..+|..++.+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 355667777888899999999999999874 455567888888888876 4899999999998864 3367799999999
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGR--- 873 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 873 (967)
+...|++++|+..++++++ ..|+ ..+|..++.++...|++++|++.++++++.+ +.+..+|+.++.++.+.|+
T Consensus 122 ~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 9999999999999999998 4665 6889999999999999999999999999854 4467788888888777665
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc---ccceeeeccC--CCcccc
Q 048794 874 ---IEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS---SELQVIYAEN--PRATSL 945 (967)
Q Consensus 874 ---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~l~~~~~~~--g~~~~~ 945 (967)
+++|++.+.++++. .|.+...|..++.++...| .+++.+.++++++++|++... ..++.+|... ++.+.+
T Consensus 199 ~~~~~~ai~~~~~al~~-~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKL-VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp HHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhHHhHHHHHHHHHh-CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 68899999998874 4556678888877665544 578888888888888876543 3667776543 444444
Q ss_pred cc
Q 048794 946 SH 947 (967)
Q Consensus 946 ~~ 947 (967)
..
T Consensus 277 ~~ 278 (315)
T d2h6fa1 277 ED 278 (315)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.7e-11 Score=120.92 Aligned_cols=249 Identities=10% Similarity=0.064 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG-RVEELLKLYEEMSFRGCKPNTISHNIVIS 726 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 726 (967)
..++..+...+.+.+.+++|+..++++++.+ +-+..+|+..+.++...| ++++|+..+++++... +.+..+|..++.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 4556667777888899999999999999875 336778889998888876 4899999999998875 446778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---
Q 048794 727 GLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD--- 803 (967)
Q Consensus 727 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 803 (967)
++...|++++|+..+.++++.. +.+..+|..++.++...|++++|+..++++++.++ .+...|+.++.++...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccch
Confidence 9999999999999999999874 45567888899999999999999999999998743 367788888887766554
Q ss_pred ---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc--C----
Q 048794 804 ---VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA-DTISYNFMINGLGRS--G---- 872 (967)
Q Consensus 804 ---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--g---- 872 (967)
+++|+..+.++++ ..|+ ...|..++.++... ..+++.+.++.+.+....+ +...+..++.+|... +
T Consensus 199 ~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 6789999999888 4565 67788887776544 4677888888877532222 455666677776433 2
Q ss_pred ---CHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHH
Q 048794 873 ---RIEEALSLFDEMKKRGISPD-LYTYNSLILNLG 904 (967)
Q Consensus 873 ---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 904 (967)
.+++|..++...... ..|- ...|..++..+.
T Consensus 276 ~~~~~~ka~~l~~~l~~~-~DpiR~~yw~~~~~~l~ 310 (315)
T d2h6fa1 276 KEDILNKALELCEILAKE-KDTIRKEYWRYIGRSLQ 310 (315)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHH
Confidence 345555555554432 3332 244555554443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=1.9e-13 Score=140.68 Aligned_cols=268 Identities=10% Similarity=-0.020 Sum_probs=200.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHH----------HccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048794 659 LEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGY----------GKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGL 728 (967)
Q Consensus 659 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 728 (967)
...+..++|++++.++++.++. +..+|+.....+ ...|++++|+.++++++..+ +.+...|...+.++
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHH
Confidence 3444568999999999887422 444555444333 33455789999999998875 44667788887777
Q ss_pred HhcC--CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 048794 729 VKSN--SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVET 806 (967)
Q Consensus 729 ~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 806 (967)
...+ ++++|+..+.+++...+......+...+..+...|.+++|+..++++++.++ .+..+|+.++.++...|++++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCC
T ss_pred HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHH
Confidence 7665 4889999999999875433333345667788889999999999999998753 367799999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 807 ACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 807 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
|+..+++..+ ..|+. ......+...+..+++...+.+.+... ++....+..++..+...|++++|+..+.+..+
T Consensus 197 A~~~~~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 197 SGPQGRLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp SSSCCSSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8887776665 23332 223344566788888999999888754 34455566778888899999999999999875
Q ss_pred cCCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeec
Q 048794 887 RGISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYA 937 (967)
Q Consensus 887 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~ 937 (967)
..|+ ..++..++.++...|++++|+++++++++++|.+... ..|+..+.
T Consensus 271 --~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 271 --ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp --TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred --hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 3343 4788899999999999999999999999999987765 45655544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=4.4e-11 Score=124.86 Aligned_cols=300 Identities=12% Similarity=-0.016 Sum_probs=212.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCC-CC----hhhHHH
Q 048794 653 YLIHGLLEVHATEMGLDLFTTMKNAGCAPD----ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCK-PN----TISHNI 723 (967)
Q Consensus 653 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 723 (967)
..+..+...|++++|+.++++.++..+..+ ..++..++.++...|++++|+..|+++...... ++ ..++..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 345667788899999999988887643222 235677888889999999999999888653211 11 234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCC---hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC----CCHHHHH
Q 048794 724 VISGLVKSNSIDKAMDLFYNLVSG----GFSPT---PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK----PNCVIYN 792 (967)
Q Consensus 724 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~ 792 (967)
+...+...|++..|...+.++... ..... ...+..++..+...|+++.+...+......... .....+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 677788889999999888877653 11111 234566788899999999999999988764221 1234666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHH
Q 048794 793 ILINGFGKTGDVETACELFKQMIKG--GIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISYNF 863 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ 863 (967)
..+..+...+++.++...+.+.... ..... ...+..++..+...|++++|...++++....... ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 7777788889999999998887651 11111 2345667888889999999999999887532121 2345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----cCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc---------
Q 048794 864 MINGLGRSGRIEEALSLFDEMKK----RGISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS--------- 929 (967)
Q Consensus 864 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--------- 929 (967)
++.++...|++++|...+++++. .+..|+. .++..++.++...|++++|.+.+++++++.+.....
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~ 336 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 336 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 89999999999999999998862 2344443 678889999999999999999999999887654332
Q ss_pred -ccceeeeccCCCcccccchhhhh
Q 048794 930 -SELQVIYAENPRATSLSHKHCEY 952 (967)
Q Consensus 930 -~~l~~~~~~~g~~~~~~~~~~~~ 952 (967)
..+...+...++.+++++...+.
T Consensus 337 ~~~~~~~l~~~~~l~e~e~~~a~~ 360 (366)
T d1hz4a_ 337 MAQQLRQLIQLNTLPELEQHRAQR 360 (366)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 12333445667777777644443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=4e-12 Score=125.45 Aligned_cols=202 Identities=11% Similarity=-0.057 Sum_probs=114.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFG 799 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 799 (967)
++..++.+|...|++++|+..|++++... +.++.++..++.+|.+.|++++|+..|+++++..+ .+..++..++.+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHH
Confidence 44555566666666666666666666542 34455666677777777777777777777776532 24556777777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCH
Q 048794 800 KTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS----GRI 874 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 874 (967)
..|++++|+..|+++++. .|+ ......++.++.+.+..+.+..+........ +....+. +...+... +..
T Consensus 117 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHH
Confidence 777777777777777763 343 3444444555555555554444444444322 2111111 12222111 122
Q ss_pred HHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccc
Q 048794 875 EEALSLFDEMKKRGISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSS 930 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 930 (967)
+.+...+..... ..|+ ..++..++.++...|++++|++.++++++.+|++...+
T Consensus 192 ~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 192 ERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 222222222221 1122 25666778888888888888888888888888877653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=3.1e-10 Score=118.18 Aligned_cols=199 Identities=10% Similarity=-0.064 Sum_probs=106.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCc---CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC----hhhH
Q 048794 653 YLIHGLLEVHATEMGLDLFTTMKNA----GCAP---DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPN----TISH 721 (967)
Q Consensus 653 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~ 721 (967)
.+...+...|++..+...+...... .... ....+..++..+...|+++.+...+.+......... ..++
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 3344455555666655555544331 1111 112344556667777777777777776655321111 1233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHH
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSG--GFSP----TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN---CVIYN 792 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 792 (967)
......+...++...+...+.++... .... ....+...+..+...|++++|...+++..+.....+ ...+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 44445555666666666666554432 0111 112344455566666777777777666654322111 23455
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 793 ILINGFGKTGDVETACELFKQMIK----GGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
.++.++...|++++|+..+++++. .+..|+ ..++..++.+|...|++++|.+.++++++
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666677777777777776653 223333 34566667777777777777777776653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=6.4e-12 Score=123.96 Aligned_cols=219 Identities=12% Similarity=0.031 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHhCCCCC---ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 048794 734 IDKAMDLFYNLVSGGFSP---TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACEL 810 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 810 (967)
.+.|+..+++++...... ...++..++.+|.+.|++++|+..|+++++.. +.+..+|+.++.+|...|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 445556666666542111 23467888999999999999999999999864 33677999999999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 811 FKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 811 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
|+++++ ..|+ ..++..++.++...|++++|...++++++.. +.+......++..+...+..+.+..+...... .
T Consensus 94 ~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 168 (259)
T d1xnfa_ 94 FDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--S 168 (259)
T ss_dssp HHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--S
T ss_pred hhHHHH--HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc--c
Confidence 999999 4676 6789999999999999999999999999753 34555555666666777766666665555554 2
Q ss_pred CCCHHhHHHHHHH---HHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchhhhhhccccc
Q 048794 890 SPDLYTYNSLILN---LGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCEYLASSCT 958 (967)
Q Consensus 890 ~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 958 (967)
.+....+..+... ....+.++.+...+.+.....|+.+.+ ++||.+|...|++++|...+...+..+|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 169 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 3332222222111 123356888888899988889988877 68999999999999999965566666553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=1.1e-11 Score=127.39 Aligned_cols=233 Identities=9% Similarity=0.004 Sum_probs=144.0
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC--hHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHH
Q 048794 661 VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGR--VEELLKLYEEMSFRGCKPNTISH-NIVISGLVKSNSIDKA 737 (967)
Q Consensus 661 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A 737 (967)
.+.+++|+.+++.+++.+ +.+...|..++.++...++ +++|+..++++.... +++...+ ...+..+...+.+++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 334455556666665543 2345555556555555443 566777776666653 2233333 3344555566677777
Q ss_pred HHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 048794 738 MDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKG 817 (967)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 817 (967)
+..+++++..+ +.+..++..++.++.+.|++++|...++++.+. .|+. ......+...+..+++...+.+.+..
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 77777666653 344556666777777777777666555554442 1111 11222334455667788888887774
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHh
Q 048794 818 GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-LYT 895 (967)
Q Consensus 818 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 895 (967)
.|+ ...+..++.++...|++++|...+.++...+ +.+..++..++.++...|++++|++.++++.+ +.|+ ...
T Consensus 238 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y 312 (334)
T d1dcea1 238 --RAEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAY 312 (334)
T ss_dssp --CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHH
T ss_pred --CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHH
Confidence 343 4566677777888888888888888877643 22556777888888888888888888888886 4454 467
Q ss_pred HHHHHHHHHhc
Q 048794 896 YNSLILNLGRA 906 (967)
Q Consensus 896 ~~~l~~~~~~~ 906 (967)
|..|...+...
T Consensus 313 ~~~L~~~~~~e 323 (334)
T d1dcea1 313 LDDLRSKFLLE 323 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhHh
Confidence 77777666643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=1e-09 Score=110.43 Aligned_cols=194 Identities=12% Similarity=0.079 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 048794 733 SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFK 812 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 812 (967)
..++|..+|+++++...+.+...+...+..+.+.|+++.|..+|+++++..+.....+|...+....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677888888887644555566777788888888888888888888875433234478888888888888888888888
Q ss_pred HHHhCCCCCC-HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C
Q 048794 813 QMIKGGIRPD-LKSYSVLVDCL-CMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG-I 889 (967)
Q Consensus 813 ~~~~~~~~p~-~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 889 (967)
++++. .|+ ...+...+... ...|+.+.|..+|+.++... +.+...+..+++.+...|++++|..+|+++++.. .
T Consensus 159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 88874 343 34455555443 34578888888888888642 4466778888888888888888888888887541 2
Q ss_pred CCC--HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 890 SPD--LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 890 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+|+ ..+|..++..-...|+.+.+.++.+++.++.|+.+..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence 332 2467777777777888888888888888888877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=6.2e-10 Score=110.77 Aligned_cols=200 Identities=13% Similarity=-0.000 Sum_probs=132.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSG----G-FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP-N----CVIYNILI 795 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~ 795 (967)
..|...+++++|.+.|.++... + .+....+|..++.+|.+.|++++|+..++++.+..... + ..++..++
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 3455566666666666655542 1 11122456777888888888888888888776421111 1 33667777
Q ss_pred HHHh-ccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHH
Q 048794 796 NGFG-KTGDVETACELFKQMIK----GGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD------TISYNF 863 (967)
Q Consensus 796 ~~~~-~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 863 (967)
..|. ..|++++|++.|+++.+ .+..+. ..++..++.++...|++++|+..|+++........ ...+..
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence 7764 46899999999998865 222222 35678889999999999999999999886421111 123455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHhHHHHHHHHHh--cCCHHHHHHhhcCCCcCCCCcc
Q 048794 864 MINGLGRSGRIEEALSLFDEMKKRGISPD------LYTYNSLILNLGR--AGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 864 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~--~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
.+.++...|+++.|...++++.+ +.|. ...+..++.++.. .+.+++|+..|+++.+++|-..
T Consensus 205 ~~~~~l~~~d~~~A~~~~~~~~~--~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~ 274 (290)
T d1qqea_ 205 KGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH--hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHH
Confidence 66777889999999999998874 3332 2344566666554 2568999999999998876443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.1e-10 Score=95.33 Aligned_cols=108 Identities=16% Similarity=0.047 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
+...|..+...|++++|+..|+++++.+ +.++..|..++.+|...|++++|+..++++++. .|.++..|..++.++..
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHh-ccchhhHHHHHHHHHHH
Confidence 3445777888888888888888888753 446777888888888888888888888888865 45566888888888888
Q ss_pred cCCHHHHHHhhcCCCcCCCCcccc-ccceee
Q 048794 906 AGMVEEARKLAGGNCFVQPSEFVS-SELQVI 935 (967)
Q Consensus 906 ~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~ 935 (967)
.|++++|+..++++++++|+++.. ..++++
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888888888888888888888876 344443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.5e-09 Score=99.49 Aligned_cols=120 Identities=10% Similarity=-0.034 Sum_probs=72.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 048794 759 LIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG 837 (967)
Q Consensus 759 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 837 (967)
.+..+...|+++.|++.|+++. +|+..+|..++.+|...|++++|++.|+++++ ..|+ ...|..++.++.+.|
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhc
Confidence 3555666666666666665532 34556666666666666666666666666666 3454 456666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 838 RVDDALHYFEELKLNGLDAD----------------TISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 838 ~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
++++|+..|++++... +++ ..++..++.++...|++++|.+.++.+.
T Consensus 85 ~~~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666666431 111 2344455666666666666666666655
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=3.5e-08 Score=98.81 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 048794 33 LRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEE 112 (967)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 112 (967)
.+++..+|+++....+. ++.+|...+..+...++.. ...+. .....+..+.+..+|+.
T Consensus 32 ~~Rv~~vyerAl~~~~~-~~~lW~~y~~~~~~~~~~~---------~~~~~------------~~~~~~~~~~a~~i~~r 89 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLL---------AEKGD------------MNNAKLFSDEAANIYER 89 (308)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHH---------HHTSC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCchH---------HHHHH------------HhhcccchHHHHHHHHH
Confidence 34577788888877543 7777876666554333210 00000 00111223444555555
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 048794 113 MERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQ 192 (967)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 192 (967)
......+.+...+..++..+.+.|+++.|..+|+++..........+|...+..+.+.|+++.|.++|+.+...... +.
T Consensus 90 al~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~ 168 (308)
T d2onda1 90 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RH 168 (308)
T ss_dssp HHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CT
T ss_pred HHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cH
Confidence 54433333444445555555555555555555555544321122334555555555555555555555555443221 12
Q ss_pred hhHHHHHHH-HHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHH
Q 048794 193 VTYITLLDK-FSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGI-LP--NLHTYNTL 268 (967)
Q Consensus 193 ~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l 268 (967)
..+...... +...|+.+.|..+|+.++.. .+.++..|...+..+.+.|+++.|..+|++...... .| ....|...
T Consensus 169 ~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~ 247 (308)
T d2onda1 169 HVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 247 (308)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 222222211 22335555555555555543 233455555555555556666666666655544321 11 12345555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH
Q 048794 269 ICGLLRLDRVEEALEVFNNMEI 290 (967)
Q Consensus 269 l~~~~~~~~~~~a~~~~~~~~~ 290 (967)
+..-...|+.+.+.++++.+.+
T Consensus 248 ~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 248 LAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5544555666666665555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=5.5e-09 Score=95.58 Aligned_cols=132 Identities=8% Similarity=-0.013 Sum_probs=108.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
.|+. +..+...|++++|++.|+++ .+|+..+++.++.+|...|++++|+..|+++++.+ +....+|..++.++.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 4443 66678889999999999864 35677889999999999999999999999999864 446788899999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 870 RSGRIEEALSLFDEMKKRGISPD----------------LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 870 ~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
+.|++++|+..|++++.. .+++ ..++..++.++.+.|++++|.+.+++++.+.|+...
T Consensus 82 ~~g~~~~A~~~~~kAl~~-~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~ 155 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 155 (192)
T ss_dssp HTTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred hhccHHHHHHHHHHHHHh-CccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence 999999999999998753 2221 256778899999999999999999999998888644
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=4.7e-09 Score=104.22 Aligned_cols=202 Identities=15% Similarity=0.042 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHH
Q 048794 733 SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY----GCKPN-CVIYNILINGFGKTGDVETA 807 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A 807 (967)
++++|.++|.+ .+.+|...|++++|...|.++.+. +-+++ ..+|..++.+|.+.|++++|
T Consensus 32 ~~~~Aa~~y~~---------------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 32 KFEEAADLCVQ---------------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHH---------------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHH---------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45777776665 467899999999999999999763 11112 24899999999999999999
Q ss_pred HHHHHHHHhC---CCCCC--HHHHHHHHHHHHh-cCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHH
Q 048794 808 CELFKQMIKG---GIRPD--LKSYSVLVDCLCM-VGRVDDALHYFEELKL----NGLDA-DTISYNFMINGLGRSGRIEE 876 (967)
Q Consensus 808 ~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~ 876 (967)
++.|+++++. .-.+. ..++..++.+|.. .|++++|+++|+++.+ .+.++ ...++..++.++...|++++
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence 9999998762 11121 3567788888855 6999999999999874 22111 23467889999999999999
Q ss_pred HHHHHHHHHHcCCCCC------HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc------ccceeeecc--CCCc
Q 048794 877 ALSLFDEMKKRGISPD------LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS------SELQVIYAE--NPRA 942 (967)
Q Consensus 877 A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~l~~~~~~--~g~~ 942 (967)
|++.|+++........ ...+...+.++...|+++.|...+++++.++|..+.. ..|...|.. .+++
T Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~ 256 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (290)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999986421111 1234566777788899999999999999999976653 134444433 3446
Q ss_pred ccccchh
Q 048794 943 TSLSHKH 949 (967)
Q Consensus 943 ~~~~~~~ 949 (967)
+++.+.+
T Consensus 257 ~eai~~y 263 (290)
T d1qqea_ 257 SEHCKEF 263 (290)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=2.7e-08 Score=82.18 Aligned_cols=89 Identities=20% Similarity=0.087 Sum_probs=50.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048794 795 INGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGR 873 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 873 (967)
+..+...|++++|+..|+++++. .|+ ...|..++.++...|++++|+..++++++.+ +.++..|..++.++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 44455555666666666665552 343 4455555666666666666666666655532 3345555556666666666
Q ss_pred HHHHHHHHHHHHH
Q 048794 874 IEEALSLFDEMKK 886 (967)
Q Consensus 874 ~~~A~~~~~~~~~ 886 (967)
+++|+..|+++++
T Consensus 87 ~~~A~~~~~~a~~ 99 (117)
T d1elwa_ 87 FEEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.86 E-value=7.1e-07 Score=86.95 Aligned_cols=224 Identities=11% Similarity=-0.012 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCChhhHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK----SGRVEELLKLYEEMSFRGCKPNTISHN 722 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 722 (967)
++..+..++..+...+++++|++.|++..+.| +..+...|+.+|.. ..++..|..++......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34566666666667777777777777777654 45556666666655 456677777777766543 333344
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 723 IVISGLVK----SNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIYNIL 794 (967)
Q Consensus 723 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 794 (967)
.++..+.. ..+.+.|...++.....+.. .....++..+.. ......|...+..... ..+...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhh
Confidence 44444332 34566666666666654321 122223333322 3345556666666555 2355566666
Q ss_pred HHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 795 INGFGK----TGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 795 ~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
+..|.. ..+...+...++...+. .+..+...++.+|.. .+++++|+.+|+++.+.| ++..+..|+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~---g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhccccc---cccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 666553 34555666666666552 345566666666554 445666677776666644 3445555666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 048794 867 GLGR----SGRIEEALSLFDEMKKRG 888 (967)
Q Consensus 867 ~~~~----~g~~~~A~~~~~~~~~~~ 888 (967)
+|.+ ..++++|.++|+++.+.|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 6653 225666666666666544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.85 E-value=1.3e-06 Score=85.00 Aligned_cols=226 Identities=12% Similarity=-0.031 Sum_probs=154.0
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhcHHH
Q 048794 683 ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVK----SNSIDKAMDLFYNLVSGGFSPTPCTYGP 758 (967)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 758 (967)
+..+..|+..+...+++++|+++|+++.+.| +..++..++..|.. ..+...|...+......+ .......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4566777777788888888888888887764 56667777777776 567888888888877754 2233444
Q ss_pred HHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048794 759 LIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFG----KTGDVETACELFKQMIKGGIRPDLKSYSVLV 830 (967)
Q Consensus 759 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 830 (967)
++..+.. ..+.+.|...++...+.| .......++..+. .......|...+.+... ..+...+..|+
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhh---hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhh
Confidence 4444432 456778888888887754 2333444444443 24467777777777766 34566777777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 831 DCLCM----VGRVDDALHYFEELKLNGLDADTISYNFMINGLGR----SGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 831 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
..+.. ..+...+..+++.+.+.+ ++.+...++..|.. ..++++|+.+|+++.+.| ++.....|+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 77765 455777788888777643 56666777777765 557888888888887654 45677778877
Q ss_pred HHh----cCCHHHHHHhhcCCCcCCCCc
Q 048794 903 LGR----AGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 903 ~~~----~g~~~~A~~~~~~~l~~~p~~ 926 (967)
+.. ..++++|.++++++..+.+..
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 775 347888888888887666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=4.7e-09 Score=93.05 Aligned_cols=93 Identities=17% Similarity=0.094 Sum_probs=51.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
+...+..|.+.|++++|+..|+++++ ..|+ ...|..++.+|...|++++|+..|+++++.+ +.+..++..++.++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHH
Confidence 34445555555666666666666555 2343 4555555666666666666666666655532 224455555566666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048794 870 RSGRIEEALSLFDEMKK 886 (967)
Q Consensus 870 ~~g~~~~A~~~~~~~~~ 886 (967)
..|++++|...++++..
T Consensus 90 ~~g~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVK 106 (159)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.83 E-value=3.9e-09 Score=98.62 Aligned_cols=130 Identities=11% Similarity=0.015 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 786 PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFM 864 (967)
Q Consensus 786 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 864 (967)
|+...+...+..+.+.|++++|+..|+++++. .|+ ..+|..++.+|.+.|++++|+..|+++++.+ +....+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence 56677778888899999999999999998884 565 6788899999999999999999999998753 3367788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCC
Q 048794 865 INGLGRSGRIEEALSLFDEMKKRGISPD-LYTYNSLILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 865 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l 920 (967)
+.+|...|++++|+..|+++++. .|+ ...+...+......++...+.....+..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 133 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRIAKKKRWNSIEERRI 133 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999988752 232 2233334444445555555555555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=1.3e-09 Score=90.26 Aligned_cols=100 Identities=17% Similarity=0.089 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH---HhHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGR---IEEALSLFDEMKKRGISPDL---YTYNSLI 900 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~---~~~~~l~ 900 (967)
..++..+...+++++|.+.|++++..+ +.++.++..++.++.++++ +++|+++++++++. .|++ .++..++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~--~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc--cCCchHHHHHHHHH
Confidence 345666677777888888888877754 4466777778888776554 44577777777642 2332 3677788
Q ss_pred HHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 901 LNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 901 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.++.+.|++++|+++++++++++|+|..+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A 108 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQA 108 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence 88888888888888888888888888776
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=2.6e-09 Score=95.61 Aligned_cols=87 Identities=11% Similarity=-0.111 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeecc
Q 048794 860 SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAE 938 (967)
Q Consensus 860 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~ 938 (967)
+|..++.+|.+.|++++|+..++++++. -|.+..++..++.++...|++++|+..++++++++|+|+.+ ..++.++..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL-DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhc-cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4566777777888888888888877764 34455777777888888888888888888888888877777 466666665
Q ss_pred CCCcccccc
Q 048794 939 NPRATSLSH 947 (967)
Q Consensus 939 ~g~~~~~~~ 947 (967)
.+...+.++
T Consensus 143 ~~~~~~~e~ 151 (170)
T d1p5qa1 143 IRRQLAREK 151 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=8.4e-08 Score=84.70 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=79.8
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCL 833 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 833 (967)
.+...+..|.+.|++++|+..|+++++.. +.+...|..++.+|...|++++|+..|+++++ ..|+ ..++..++.++
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHH
Confidence 35566777888888888888888888764 33666888888888888888888888888887 4565 57788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 834 CMVGRVDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
...|++++|...+++++..+ +.+..++..+..+
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQEC 121 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 88888888888888887743 2345555544433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.71 E-value=2.6e-08 Score=92.76 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=88.6
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVL 829 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 829 (967)
|+...+...+..|.+.|++++|+..|+++++.. +.+..+|..++.+|.+.|++++|+..|+++++ +.|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 455667788999999999999999999999874 34778999999999999999999999999998 5786 7899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048794 830 VDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+.+|...|++++|+..|+++++
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999986
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.62 E-value=6.6e-08 Score=78.95 Aligned_cols=88 Identities=10% Similarity=0.018 Sum_probs=40.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 794 LINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 794 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
++..+.+.|++++|+..|++++. ..|+ ..+|..++.++.+.|++++|+..++++++.+ +.+..++..++.+|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 34444444444444444444444 2333 3444444444444444444444444444422 223444444444444444
Q ss_pred CHHHHHHHHHHH
Q 048794 873 RIEEALSLFDEM 884 (967)
Q Consensus 873 ~~~~A~~~~~~~ 884 (967)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.60 E-value=1.5e-07 Score=76.77 Aligned_cols=90 Identities=8% Similarity=-0.042 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA 906 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 906 (967)
..++..+.+.|++++|...+++++..+ +.++.+|..++.++.+.|++++|+..++++++. .|.+..++..++.++...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc-ccccccchHHHHHHHHHC
Confidence 334445555555555555555555432 223445555555555555555555555555542 222335555555555555
Q ss_pred CCHHHHHHhhcC
Q 048794 907 GMVEEARKLAGG 918 (967)
Q Consensus 907 g~~~~A~~~~~~ 918 (967)
|++++|++.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 555555555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=3.1e-09 Score=114.29 Aligned_cols=227 Identities=10% Similarity=-0.009 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHcCCCcC-HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 666 MGLDLFTTMKNAGCAPD-ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNL 744 (967)
Q Consensus 666 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 744 (967)
+|.+.|++..+. +|+ ..++..++.++...|++++| |++++.. .|+...-. -+....-...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~-~~e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDK-KVEQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHH-THHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHH-hHHHHHHHHHHHHHHHHHHHh
Confidence 677888877764 343 44566677777777777765 6676654 22211100 011111112244566666666
Q ss_pred HhCCCCCChhcH--HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 048794 745 VSGGFSPTPCTY--GPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD 822 (967)
Q Consensus 745 ~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 822 (967)
......++.... ......+...+.++.|+..+.+..+.. +++...+..++..+.+.|+.++|...+++.+.. .|
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~- 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC- 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--HH-
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-
Confidence 654322222111 111222233444555555555444432 224446677777777777777777777776651 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
..++..+|.++...|++++|..+|+++++.. +.+...|+.|+.++...|+..+|+..|.+++.. .+|-+.++.+|+..
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~-~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 3466677777777788888888888877643 335567777888887788888888888877754 34556777777766
Q ss_pred HHhc
Q 048794 903 LGRA 906 (967)
Q Consensus 903 ~~~~ 906 (967)
+.+.
T Consensus 230 ~~~~ 233 (497)
T d1ya0a1 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.58 E-value=1e-07 Score=83.07 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-cccee
Q 048794 859 ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQV 934 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~ 934 (967)
.++..++.+|.+.|++++|++.++++++. -|.+..+|..++.++...|++++|+..++++++++|+|+.+ ..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~-~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccc-cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35667888888888888888888888864 34455788888888888888888888888888888888776 34443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.57 E-value=1.2e-08 Score=91.29 Aligned_cols=86 Identities=7% Similarity=-0.145 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeee
Q 048794 858 TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIY 936 (967)
Q Consensus 858 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~ 936 (967)
...+..++.++.+.|++++|+..++++++. -|.+..+|..++.++...|++++|+..++++++++|+|+.+ ..|+.++
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEI-DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345566777777777777777777777753 23344677777777777777777777777777777777766 4555555
Q ss_pred ccCCCccc
Q 048794 937 AENPRATS 944 (967)
Q Consensus 937 ~~~g~~~~ 944 (967)
.......+
T Consensus 156 ~~l~~~~~ 163 (169)
T d1ihga1 156 QKIKAQKD 163 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44443333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.56 E-value=5.1e-08 Score=86.88 Aligned_cols=83 Identities=8% Similarity=-0.120 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccC
Q 048794 861 YNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAEN 939 (967)
Q Consensus 861 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~ 939 (967)
|..++.+|.+.|++++|+..++++++. .|.+..++..++.++...|++++|+..++++++++|+|+.+ ..++.+....
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l-~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhc-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 445666666666666666666666653 23344666666666666666666666666666666666665 3555554444
Q ss_pred CCccc
Q 048794 940 PRATS 944 (967)
Q Consensus 940 g~~~~ 944 (967)
+.+.+
T Consensus 146 ~~~~e 150 (168)
T d1kt1a1 146 KEHNE 150 (168)
T ss_dssp HHHHH
T ss_pred HhHHH
Confidence 44433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=7.3e-07 Score=79.20 Aligned_cols=84 Identities=11% Similarity=-0.052 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 904 (967)
++..++.+|.+.|++++|+..+++++..+ +.+..++..++.+|...|++++|+..|+++++. -|.+..+...+..+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 45556666777777777777777776643 335666666777777777777777777777653 2334455555555555
Q ss_pred hcCCHH
Q 048794 905 RAGMVE 910 (967)
Q Consensus 905 ~~g~~~ 910 (967)
+.+...
T Consensus 142 ~~~~~~ 147 (170)
T d1p5qa1 142 RIRRQL 147 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.2e-07 Score=76.46 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=53.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG---DVETACELFKQMIKGGIRPD-LKSYSVLVDCL 833 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 833 (967)
.++..+...+++++|.+.|++++..+ +.+..++..++.++.+.+ ++++|+.+|++++..+..|+ ..+++.++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34555556666666666666666653 235556666666665433 33456666666665321122 23556666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 048794 834 CMVGRVDDALHYFEELKL 851 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~ 851 (967)
.+.|++++|+++|+++++
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 666666666666666665
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=7.5e-08 Score=103.25 Aligned_cols=228 Identities=9% Similarity=-0.038 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh-hHHHHHHHHHccCChHHHHHHHH
Q 048794 629 LAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIS-TYNLLLDGYGKSGRVEELLKLYE 707 (967)
Q Consensus 629 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 707 (967)
-+|.++|++.+.-. +....++..++.++...+++++| |++++.. .|+.. ......... ...+..+++.++
T Consensus 3 ~eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw--~~~y~~~ie~~r 73 (497)
T d1ya0a1 3 LQSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW--NHAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH--HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH--HHHHHHHHHHHH
Confidence 36888888886543 23344566677778888888776 6777654 23321 111111111 123567788888
Q ss_pred HHHhCCCCCChhhHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 048794 708 EMSFRGCKPNTISHNIV--ISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK 785 (967)
Q Consensus 708 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 785 (967)
+..+....++....... ...+...+.++.|+..+....... ++....+..++..+.+.|+.++|...+++.... .
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~ 150 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--I 150 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--H
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--C
Confidence 87765433333322221 122233455666666555554432 344556778889999999999999999888763 1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 786 PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFM 864 (967)
Q Consensus 786 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 864 (967)
...++..++.++...|++++|+..|+++++ ..|+ ...|+.||.++...|+..+|..+|.+++..+ +|-+.++.+|
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL 226 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL 226 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 234788899999999999999999999999 5787 5899999999999999999999999999865 6778888999
Q ss_pred HHHHHhcC
Q 048794 865 INGLGRSG 872 (967)
Q Consensus 865 ~~~~~~~g 872 (967)
+.++.+..
T Consensus 227 ~~~~~~~~ 234 (497)
T d1ya0a1 227 QKALSKAL 234 (497)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 88875443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=8.6e-07 Score=74.25 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=51.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGL-DAD-----TISYNF 863 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-----~~~~~~ 863 (967)
+..++..+...|++++|+..|+++++. .|+ ..++..++.+|.+.|++++|++.++++++.+. .+. ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 334555566666666666666666652 343 45555666666666666666666666554210 000 134555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048794 864 MINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 864 l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
++.++...+++++|++.|++.+.
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 55666666666666666666553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.2e-06 Score=73.31 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--------HHHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD--------LKSYS 827 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--------~~~~~ 827 (967)
+..++..+.+.|++++|+..|+++++.+ +.+..++..++.+|.+.|++++|+..++++++. .|+ ..++.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 4567888999999999999999999875 336778999999999999999999999998862 221 24677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFM 864 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 864 (967)
.++.++...+++++|+.+|++++.. .+++.....+
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 118 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 8888889999999999999998864 4555544433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.40 E-value=1.7e-06 Score=75.16 Aligned_cols=80 Identities=14% Similarity=-0.007 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
.++.+++.+|.+.|++++|++.++++++.+ +.+..+|..++.++...|++++|+..|+++++. .|.+..+...+..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l-~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 366788889999999999999999998854 447788889999999999999999999999874 233456666665554
Q ss_pred Hh
Q 048794 904 GR 905 (967)
Q Consensus 904 ~~ 905 (967)
.+
T Consensus 146 ~k 147 (153)
T d2fbna1 146 NK 147 (153)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.40 E-value=1.8e-06 Score=76.67 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
...+..++.++.+.|++++|+..++++++.+ +....+|..++.+|...|++++|++.|+++++. -|.+..+...+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-~p~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 4567888999999999999999999999864 457788999999999999999999999999975 34456777788777
Q ss_pred HHhcCCHHHHHH
Q 048794 903 LGRAGMVEEARK 914 (967)
Q Consensus 903 ~~~~g~~~~A~~ 914 (967)
..+.....++.+
T Consensus 155 ~~~l~~~~~~~k 166 (169)
T d1ihga1 155 KQKIKAQKDKEK 166 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.36 E-value=2.8e-06 Score=75.20 Aligned_cols=94 Identities=10% Similarity=0.007 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 904 (967)
.+.+++.+|.+.|++++|+..+++++..+ +.+..++..++.++...|++++|...|+++++. -|.+..+...+..+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 45566777777777777777777777643 445667777777777777777777777777753 2334456556655555
Q ss_pred hcCCHH-HHHHhhcCCC
Q 048794 905 RAGMVE-EARKLAGGNC 920 (967)
Q Consensus 905 ~~g~~~-~A~~~~~~~l 920 (967)
+.+.+. ...+.+.+.+
T Consensus 144 ~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 544332 3334443333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.24 E-value=6.5e-08 Score=83.19 Aligned_cols=72 Identities=15% Similarity=0.053 Sum_probs=39.6
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMV----------GRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
|.+.+.+++|+..|+++++ ..|+ ..++..++.++... +.+++|+..|+++++.+ +.+..+|..++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHH
Confidence 3445566677777777666 3454 45666666666533 23355555555555532 224455555555
Q ss_pred HHHhcC
Q 048794 867 GLGRSG 872 (967)
Q Consensus 867 ~~~~~g 872 (967)
+|...|
T Consensus 84 ~y~~~g 89 (145)
T d1zu2a1 84 AYTSFA 89 (145)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 554443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=3.2e-07 Score=71.84 Aligned_cols=73 Identities=10% Similarity=-0.018 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccce
Q 048794 861 YNFMINGLGRSGRIEEALSLFDEMKKRG-----ISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQ 933 (967)
Q Consensus 861 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~ 933 (967)
+..+|.++.+.|++++|+..++++++.. ..++ ..++..++.++.+.|++++|+..++++++++|+++.+ ++++
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 4456667777777777777777665320 0111 3566677777777777777777777777777777766 4443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.18 E-value=4.7e-07 Score=86.28 Aligned_cols=128 Identities=13% Similarity=-0.052 Sum_probs=96.1
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEE 876 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 876 (967)
..+.|++++|++.+++.++. .|+ ...+..++.+|+..|++++|...++.+.+.+ +.....+..++.++...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHH
Confidence 45779999999999999984 665 6889999999999999999999999998853 2345566677777766666555
Q ss_pred HHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 877 ALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 877 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+.......... .+|+. ..+...+..+...|++++|+..++++.++.|+.+..
T Consensus 83 a~~~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcc-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 54433322211 12332 444566778888999999999999999999999886
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.04 E-value=5.6e-06 Score=70.73 Aligned_cols=72 Identities=8% Similarity=0.012 Sum_probs=50.2
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT----------GDVETACELFKQMIKGGIRPD-LKSYSVLVD 831 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 831 (967)
|.+.+.+++|+..|+++++.. +.+..++..++.++... +.+++|+..|+++++ +.|+ ..+|+.++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHH
Confidence 556677888888888887764 33566777777776533 345678888888877 4665 577788888
Q ss_pred HHHhcC
Q 048794 832 CLCMVG 837 (967)
Q Consensus 832 ~~~~~g 837 (967)
+|...|
T Consensus 84 ~y~~~g 89 (145)
T d1zu2a1 84 AYTSFA 89 (145)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.03 E-value=5.7e-06 Score=72.11 Aligned_cols=104 Identities=17% Similarity=0.077 Sum_probs=68.7
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHHC--CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 048794 825 SYSVL--VDCLCMVGRVDDALHYFEELKLN--GLDA---------DTISYNFMINGLGRSGRIEEALSLFDEMKKR---- 887 (967)
Q Consensus 825 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~--~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 887 (967)
++..+ +..+...|++++|+..|+++++. ..+. ...+|+.++.+|...|++++|...++++++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 55566667777777777777641 1110 1346777788888888888888888877632
Q ss_pred -CCCCC-----HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 888 -GISPD-----LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 888 -~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
...++ ..++..++.++...|++++|+..+++++++.|+...
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 11111 124667788888888888888888888888776665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.93 E-value=0.0056 Score=59.30 Aligned_cols=175 Identities=10% Similarity=0.047 Sum_probs=90.2
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048794 85 PSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLI 164 (967)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 164 (967)
|+..-...+...|.+.|.++.|..++..+. .+..++..+.+.++++.|...+.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 444445556666777777777777776532 14455566677777777777766542 556777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHH
Q 048794 165 DALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVE 244 (967)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 244 (967)
..+.+.....-+ .+.......++.....++..|...|.++....+++..+... ..+...++.++..|++.+. +
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~ 149 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-Q 149 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-H
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-H
Confidence 777766554433 12222233455555667777777777887777777765432 3466667777777776542 3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 048794 245 EAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNN 287 (967)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 287 (967)
+ +.+.+...+ +..-...++..|.+.+-|+++.-++..
T Consensus 150 k---l~e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~ 186 (336)
T d1b89a_ 150 K---MREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDK 186 (336)
T ss_dssp H---HHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred H---HHHHHHhcc---ccCCHHHHHHHHHHcCChHHHHHHHHh
Confidence 3 333332211 111123344555555555555544443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.92 E-value=0.00012 Score=64.54 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=86.8
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLC 834 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 834 (967)
.....+......|++++|...|.+++... +... +.......-+...-..+.. -....+..++.++.
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVE----DKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34456667788899999999999988752 1111 0000110111111111111 01346778899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHhHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK-----KRGISPDLYTYNS 898 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~ 898 (967)
..|++++|+..++++++.+ +-+...|..++.+|...|+..+|++.|+++. +.|+.|...+...
T Consensus 79 ~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 9999999999999999853 4477789999999999999999999999874 3588888765433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=0.019 Score=55.45 Aligned_cols=136 Identities=14% Similarity=0.104 Sum_probs=74.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 048794 119 RPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITL 198 (967)
Q Consensus 119 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 198 (967)
.||..-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 35555556667777788888888888876543 4666677777788888777766542 44566666
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC
Q 048794 199 LDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRL 275 (967)
Q Consensus 199 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 275 (967)
...+........+ ++.......++.....++..|-..|.+++...+++...... ..+...++.++..+++.
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh
Confidence 6666665544332 22222233355555667777777777777777777665432 34566667777776664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.76 E-value=0.00017 Score=62.33 Aligned_cols=97 Identities=20% Similarity=0.177 Sum_probs=67.7
Q ss_pred HHHHH--HHHHhccCCHHHHHHHHHHHHhCC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 048794 790 IYNIL--INGFGKTGDVETACELFKQMIKGG-IRPD----------LKSYSVLVDCLCMVGRVDDALHYFEELKLN---- 852 (967)
Q Consensus 790 ~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~-~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 852 (967)
+|..+ +..+...|++++|+..|+++++.. ..|+ ..+|..++.+|...|++++|...++++++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 445667788888888888877510 0111 246778888888889998888888887741
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 853 -GLDAD-----TISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 853 -~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
...++ ..++..++.+|...|++++|+..|+++++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11221 23567789999999999999999999873
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00012 Score=56.52 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLN---G--LDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYN 897 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 897 (967)
..++.+|.++.+.|++++|+.+|+++++. . ..+ ...++..|+.++.+.|++++|+..++++++. .|.+..++.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-~P~~~~a~~ 84 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-DPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-CcCCHHHHH
Confidence 44556777777777777777777776631 0 111 1356667777777777777777777777753 233345555
Q ss_pred HHHH
Q 048794 898 SLIL 901 (967)
Q Consensus 898 ~l~~ 901 (967)
.+..
T Consensus 85 Nl~~ 88 (95)
T d1tjca_ 85 NLKY 88 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.72 E-value=2.4e-05 Score=74.17 Aligned_cols=122 Identities=20% Similarity=0.145 Sum_probs=90.1
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDD 841 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 841 (967)
..+.|++++|+..+++.++.. +.+...+..++.+|+..|++++|++.|+++.+ ..|+ ...+..++.++...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHH
Confidence 456799999999999999874 34778999999999999999999999999998 5777 4666667776665555544
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 842 ALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 842 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
+..........+.++....+...+..+...|+.++|.+.++++.+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 4333222221221223344555677888999999999999999864
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.71 E-value=0.00031 Score=61.78 Aligned_cols=131 Identities=9% Similarity=0.069 Sum_probs=91.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFG 799 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 799 (967)
.....+......|++++|.+.|.+++.....+ .. ...+..+-+...-..+.. .....+..++.++.
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l---------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGP-VL---------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TT---------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc-cc---------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34556677889999999999999999862111 10 001111111111122221 12347788899999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHHHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELK-----LNGLDADTISYNFMIN 866 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~l~~ 866 (967)
..|++++|+..+++++. ..|. ...|..++.+|...|+..+|++.|+++. +.|+.|++.+-.....
T Consensus 79 ~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~ 149 (179)
T d2ff4a2 79 ACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 149 (179)
T ss_dssp HTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 99999999999999998 4665 7889999999999999999999999875 3688998875443333
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.29 E-value=0.0031 Score=52.16 Aligned_cols=110 Identities=10% Similarity=0.043 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048794 768 RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDAL 843 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 843 (967)
|+++|++.|+++.+.| +......++. ....+.++|+..|++..+.| +..+...|+.+|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4455555665555543 2222222322 22345566666666665532 34455555555543 33456666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 048794 844 HYFEELKLNGLDADTISYNFMINGLGR----SGRIEEALSLFDEMKKRG 888 (967)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 888 (967)
++|+++.+.+ ++.....|+.+|.. ..+.++|.++|+++.+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 6666666543 33444555555543 335666666666666543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.17 E-value=0.0003 Score=55.55 Aligned_cols=74 Identities=12% Similarity=-0.011 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 855 DADTISYNFMINGLGRSG---RIEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.++..+-..+++++.++. +.++|+.+++.+.+. .+.+. +.++.|+-++++.|+|++|.++++++++++|+|..+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 456666667777777665 355777777777753 23333 667777777778888888888888888888877765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.97 E-value=0.0089 Score=49.22 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHH
Q 048794 733 SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK----TGDVETAC 808 (967)
Q Consensus 733 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 808 (967)
|+++|+.+|++..+.+.+ .....++ .....+.++|++.++++.+.| +......++..|.. ..+.++|+
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 345555555555554311 1222222 223456788888888888754 56677777777754 45788999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 048794 809 ELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDALHYFEELKLNG 853 (967)
Q Consensus 809 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 853 (967)
+.|++..+.| +..+...|+.+|.. ..+.++|.++|+++.+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 9999988854 45567778887765 457889999999988866
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.65 Score=47.15 Aligned_cols=203 Identities=9% Similarity=-0.022 Sum_probs=110.2
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHH
Q 048794 697 GRVEELLKLYEEMSFRGCKPNTISHNIVISG----LVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 772 (967)
.+.+.|..++....... ..+...+...... ....+..+.+...+........ +.....-.+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence 46777777777765542 2222222222221 2234555666666666555432 222222233334455677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 048794 773 KKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGR-VDDALHYFEELKL 851 (967)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 851 (967)
...+..+... ......-...++.++...|+.++|...|..+.. .++ |+....+- +.|. +.-.. . .
T Consensus 305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa~-~Lg~~~~~~~----~--~ 370 (450)
T d1qsaa1 305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAAQ-RIGEEYELKI----D--K 370 (450)
T ss_dssp HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHHH-HTTCCCCCCC----C--C
T ss_pred HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHHH-HcCCCCCCCc----C--C
Confidence 7777666432 111233456677777777777777777777654 232 44333221 1121 10000 0 0
Q ss_pred CCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 852 NGLDADTI----SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 852 ~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
....+... .-...+..+...|+..+|...+..+... . +..-...++....+.|.++.|+....++
T Consensus 371 ~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 00000110 0112456678999999999999988753 2 4556667888899999999999887765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.32 E-value=0.015 Score=45.56 Aligned_cols=65 Identities=9% Similarity=0.044 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 821 PDLKSYSVLVDCLCMVGR---VDDALHYFEELKLNGLDAD-TISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 821 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
|+..+-+..++++.++.+ .++|+.+++++...+ +.+ ..++..|+-+|.+.|++++|.++++++++
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 445555566666655443 345666666655432 112 24555566666666666666666666664
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| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=1.5 Score=44.41 Aligned_cols=206 Identities=12% Similarity=-0.023 Sum_probs=126.9
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHhhHHHH----HHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 048794 661 VHATEMGLDLFTTMKNAGCAPDISTYNLL----LDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDK 736 (967)
Q Consensus 661 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 736 (967)
..+.+.|...+......... +...+..+ +......+..+.+..++......+ .+.....-.+......+++..
T Consensus 227 ~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 227 RQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred ccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHH
Confidence 45788888888887765322 22222222 222334567788888888777653 233333334445567789999
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 737 AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
+...+..+... .........=++.++...|+.++|...|..+.. .++ -|..++.--... .+.-.. . .
T Consensus 304 ~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa~~Lg~-~~~~~~----~--~ 370 (450)
T d1qsaa1 304 LNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAAQRIGE-EYELKI----D--K 370 (450)
T ss_dssp HHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHHHHTTC-CCCCCC----C--C
T ss_pred HHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHHHHcCC-CCCCCc----C--C
Confidence 99888876433 222333444578999999999999999999985 344 344443322211 110000 0 0
Q ss_pred CCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 817 GGIRPDLK----SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 817 ~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
....+... .-...+..+...|+..+|...+..+... .++.-...++....+.|.++.|+....++.
T Consensus 371 ~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 00011110 1123356678899999999999888753 245556678899999999999998877763
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| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.16 E-value=0.47 Score=36.31 Aligned_cols=140 Identities=18% Similarity=0.195 Sum_probs=93.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhH
Q 048794 237 LCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKA 316 (967)
Q Consensus 237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 316 (967)
+.-.|.+++..+++.+.... .+..-+|..+.-....-+-+-..++++..-+. +.. ..+++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDl------------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL------------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG------------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cCc------------hhhhcHHHH
Confidence 44567888888888877664 26677788887777777777777777765432 111 123333333
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048794 317 LETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVEN 396 (967)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 396 (967)
...+-.+- .+...+...+..+..+|.-++-.++.+.+.+.+ .+++.....+..+|-+.|+..++.+++.++-+.
T Consensus 76 v~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 33332221 134455666777788888888888888866644 677777778888888888888888888888877
Q ss_pred CC
Q 048794 397 GC 398 (967)
Q Consensus 397 ~~ 398 (967)
|+
T Consensus 150 G~ 151 (161)
T d1wy6a1 150 GE 151 (161)
T ss_dssp TC
T ss_pred hH
Confidence 64
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| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.68 E-value=1.6 Score=33.40 Aligned_cols=123 Identities=19% Similarity=0.188 Sum_probs=60.4
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCC----------------CHHH
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKG-GIRP----------------DLKS 825 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p----------------~~~~ 825 (967)
+...|..++..+++.+.... .+..-||+++--....-+.+...++++..-+- ++.| +...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~ 88 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 88 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHH
Confidence 33456677777777776652 23444444444444444555555555544321 0111 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGI 889 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 889 (967)
...-..++..+|+-+.-.++++...+.+ ++++..+..++.+|.+-|...++-+++.++.+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 2222344445555555555555544432 55555555566666666666666666666655543
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.24 E-value=3.3 Score=29.93 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 048794 420 EAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLL 479 (967)
Q Consensus 420 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (967)
+..+-++.+...++.|.+....+.+.+|.+-+++..|.++++....+ +.++..+|..++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 44555555556666677777777777777777777777777766543 223334444443
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