Diaphorina citri psyllid: psy10054

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910
MAIDVEKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQVTTEQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKIGPKRSHAPNPPLPRSMPPMNKPKPGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPDFSQGLPNPLACLRALYRPLLPPWAPALQGPL
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccEEEcccccHHHccccccEEEEEccccccccccccccccccccccHHHHHcccccccccccccccccc
*****************QAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQ*EIGNPKFNFLSPGDPYHAYYQHRVK************************************************EFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKD**SSMAAILDEVKYRADYIRYQE***********KDRVAYAQIDWHDFVVVETVDYMPGEPGNFPP***************************************************************************************************************************************************************************************RIGLLDPRWVEQ********INQETVYAPGQAIEASLKQLAERRTDIFGVG****************************************IFGV*****************************************ITLEDQIHQIHK********************************************************************************************************************************************************************I************VQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERG***************NPLACLRALYRPLLPPWAPALQGP*
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MAIDVEKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQVTTEQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGAxxxxxxxxxxxxxxxxxxxxxEEEYGQRRPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKIGPKRSHAPNPPLPRSMPPMNKPKPGNFPPPTTPDEVGAxxxxxxxxxxxxxxxxxxxxxEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPDFSQGLPNPLACLRALYRPLLPPWAPALQGPL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Splicing factor 3A subunit 1 Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.confidentQ15459
Splicing factor 3A subunit 1 Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.confidentA2VDN6
Splicing factor 3A subunit 1 Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.confidentQ8K4Z5

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005634 [CC]nucleusprobableGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 4DGW, chain B
Confidence level:very confident
Coverage over the Query: 138-267
View the alignment between query and template
View the model in PyMOL
Template: 2E60, chain A
Confidence level:very confident
Coverage over the Query: 15-93
View the alignment between query and template
View the model in PyMOL
Template: 2DT7, chain B
Confidence level:very confident
Coverage over the Query: 118-195
View the alignment between query and template
View the model in PyMOL
Template: 1WE7, chain A
Confidence level:confident
Coverage over the Query: 839-874
View the alignment between query and template
View the model in PyMOL
Template: 2I5O, chain A
Confidence level:probable
Coverage over the Query: 766-791
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
1pk8, chain A probable Alignment | Template Structure