Psyllid ID: psy10054

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910
MAIDVEKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQVTTEQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKIGPKRSHAPNPPLPRSMPPMNKPKPGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPDFSQGLPNPLACLRALYRPLLPPWAPALQGPL
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccHHHccccccEEEEEccccccccccccccccccccccHHHHHcccccccccccccccccc
ccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccEccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHcccccHHccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHccccccccccccccccccHHHHHHHccccccccccccEEEEcccccccccccHHHHHHHHEHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccHccccccccHHHcccccEEcccccccHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccHHHccHHHHccccHHHHHHHHHHcccccccccHcccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHccccccHHHccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccEEEcccccccccHHHHHHHcEEccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHcccccccccEEEEccccEEEEEcccccEEEEEEEcccccccccccccccccccHHHHHHHHHcccccccccHccccc
maidvekpppgkdetvsqavvgiiypppevrnivdKTANfvarngpefesrirqneignpkfnflspgdpyhayYQHRVKDIregkvkeapapaqkALTTATQQKQQELLKQVtteqpfvpkdppkefefiadppsisaldlDIVKLTAQFVARNGRGFLTSLMQKEQRNyqfdflrpqhSLFQYFTKLLEQYTkilippkdmmfrlkdeSSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVEtvdympgepgnfpppttpdeVGARVLMQERMdngeedleeDEEMEEEygqrrpedddmqigsdeeNDYYNARMrgrnanrgrgrmqeeineddmqegttseeesdnenEEARkskeakdntqvqdmeedssseeeqedipppppppslkkvepapplpsqpsiqppplppapdkvvvkkgydpkqekipaskvQEHMRiglldprwvEQRDKHLNEKInqetvyapGQAIEASLKQLAERRtdifgvgdeetAIGKkigeedtrkddklfpgQAIEASLKQLAERRtdifgvgdeetAIGKkigeedtrkddkatwdgHTSSVEAATRAARANITLEDQIHQIHKVkgllpdeekekigpkrshapnpplprsmppmnkpkpgnfpppttpdeVGARVLMQERMdngeedleeDEEMEEeygqrrpedddmqidmeedssseeeqedipppppppslkkvepapplpsqpsiqppplppapdkvvvkkgydpkqarppvvkpsptdeflispitgekipaskvQEHMRiglldprwvEQRDKHLNEKInqetvyapeflldprwvEQRDKHLNEKINqetglffkdsnslayynitpgtKVHLQLkerggrkkslqpdfsqglpnpLACLRAlyrpllppwapalqgpl
maidvekpppgkdetvsqAVVGIIypppevrniVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQVTTEQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVayaqidwhdFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDngeedleedeemeeeygqrrpedddmqigsdeendyynarmrgrnanrgrgrmqeeineddmqegttseeesdneneearkskeakdntqvqdmeedssseeeqedippPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDpkqekipaskvqehmRIGLLDPRWVEQRDKHLNEKinqetvyapGQAIEASLKQLAERRTdifgvgdeetaigkkigeedtrkddklfPGQAIEASLKQLAERrtdifgvgdeetaigkkigeedtrkddkatwdghtSSVEAATRAARAnitledqihqihkvkgllpdeekekigpkrshapnpplprsMPPMNKPKPGNFPPPTTPDEVGARVLMQERMDNgeedleedeemeeeygqrrpedddmQIDMEEDssseeeqedipPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPkqarppvvkpsptdEFLISPITgekipaskvqehMRIGLLDPRWVEQRDKHLNekinqetvyapeflldpRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKslqpdfsqgLPNPLACLRALYRPLLPPWAPALQGPL
MAIDVEKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAPaqkalttatqqkqqellkqVTTEQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNGeedleedeemeeeYGQRRPEDDDMQIGSDEENDYYnarmrgrnanrgrgrmQEEINEDDMQegttseeesdneneeARKSKEAKDNTQVQDMeedssseeeqedipppppppslkkvepapplpsqpsiqppplppapDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKIGPKRSHApnpplprsmppmnkpkpgnfpppttpDEVGARVLMQERMDNGeedleedeemeeeYGQRRpedddmqidmeedssseeeqedipppppppsLKKVEpapplpsqpsiqppplppapDKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPDFSQGLPNPLACLRALYRPLLPPWAPALQGPL
*****************QAVVGIIYPPPEVRNIVDKTANFVARNG***********IGNPKFNFLSPGDPYHAYYQHRV*************************************************EFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKD***SMAAILDEVKYRADYIRYQE**********EKDRVAYAQIDWHDFVVVETVDYM************************************************************************************************************************************************************************************************RIGLLDPRWVEQ********INQETVYAPGQAIEASLKQLAERRTDIFGVG****************************************IFGV*****************************************ITLEDQIHQIHK********************************************************************************************************************************************************************I************VQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQ********************NPLACLRALYRPLLPPWA*******
*********************GIIYPPPEVRNIVDKTANFVARNGPEFESRIRQ*EIGNPKFNFLSPGDPYHAYYQHRVK***************************************************A****ISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIP************SSMAAILDEVKYRAD***********************AQIDWHDFVVVETVDYMPGEPGNFPP****************************************************************************************************************************************************************************************I*L****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QETGLFFKDSNSLAYYNITPGTKVHLQLKERG****************PLACLRALYRPLLPPWAPALQGP*
**************TVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG**********************ELLKQVTTEQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQE***********KDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMD***********************DDMQIGSDEENDYYNARMRGRNANRGRGRMQEEI*********************************************************SLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKIGPKRSHAPNPPLPRSMPPMNKPKPGNFPPPTTPDEVGARVLMQERMD********************PEDDDMQI**********************SLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPDFSQGLPNPLACLRALYRPLLPPWAPALQGPL
*****************QAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREG********************************PFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNG**************************************************************************************************EE********PPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIFGVGD******************KLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGE******DKATWDGHTSSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKIGPKRSHAPNPPLPRSMPPMNKPKPGNFPPPTTPDEVGARVLMQERMDNG*******************************************************************PPLPPAPDKVVVKKGYDPKQA********PTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPDFSQGLPNPLACLRALYRPLLPPWAPAL****
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MAIDVEKPPPGKDETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQVTTEQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGAxxxxxxxxxxxxxxxxxxxxxEEEYGQRRPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANITLEDQIHQIHKVKGLLPDEEKEKIGPKRSHAPNPPLPRSMPPMNKPKPGNFPPPTTPDEVGAxxxxxxxxxxxxxxxxxxxxxEEEYGQRRPEDDDMQIDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQARPPVVKPSPTDEFLISPITGEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPEFLLDPRWVEQRDKHLNEKINQETGLFFKDSNSLAYYNITPGTKVHLQLKERGGRKKSLQPDFSQGLPNPLACLRALYRPLLPPWAPALQGPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query910 2.2.26 [Sep-21-2011]
Q8K4Z5791 Splicing factor 3A subuni yes N/A 0.561 0.646 0.512 1e-144
A2VDN6793 Splicing factor 3A subuni yes N/A 0.564 0.648 0.505 1e-144
Q15459793 Splicing factor 3A subuni yes N/A 0.564 0.648 0.504 1e-144
Q8RXF1785 Probable splicing factor yes N/A 0.301 0.349 0.417 2e-52
O13900481 Pre-mRNA-splicing factor yes N/A 0.254 0.482 0.414 5e-48
Q86A14760 Probable splicing factor yes N/A 0.170 0.203 0.363 4e-22
P32524280 Pre-mRNA-splicing factor yes N/A 0.210 0.685 0.224 2e-08
Q8IWX8916 Calcium homeostasis endop no N/A 0.054 0.054 0.490 5e-07
Q8CGZ0936 Calcium homeostasis endop no N/A 0.054 0.053 0.490 6e-07
Q5R7X21028 U2 snRNP-associated SURP no N/A 0.085 0.075 0.369 1e-06
>sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1 Back     alignment and function desciption
 Score =  514 bits (1323), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 316/616 (51%), Positives = 388/616 (62%), Gaps = 105/616 (17%)

Query: 13  DETVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYH 72
           D T S+ VVGIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNEI NPKFNFL+P DPYH
Sbjct: 32  DPTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYH 91

Query: 73  AYYQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQV---TTEQPFVPKDPPKEFE 129
           AYY+H+V + +EGK +E  A   K +    Q  QQ+L ++V     ++  VPK+PP EFE
Sbjct: 92  AYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQATQQQLPQKVQAQVIQETIVPKEPPPEFE 151

Query: 130 FIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKL 189
           FIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQHSLF YFTKL
Sbjct: 152 FIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKL 211

Query: 190 LEQYTKILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAY 249
           +EQYTKILIPPK +  +LK E+ +   +LD+V YR ++ ++QE +RK+EE   EK+RVAY
Sbjct: 212 VEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAY 271

Query: 250 AQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDN-GEEDLEEDEEMEEE 308
           AQIDWHDFVVVETVD+ P E GNFPPPTTP+E+GAR+L+QER +  GE +  E E   +E
Sbjct: 272 AQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDE 331

Query: 309 YGQRRPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNE 368
             Q + E+   Q+  D +                           DM EG      SD+E
Sbjct: 332 EDQEKAEETPSQLDQDTQV-------------------------QDMDEG------SDDE 360

Query: 369 NEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPP 428
            EE +K     +      +         ++D  P       K  +P PP           
Sbjct: 361 -EEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDP-------KASKPLPPA---------- 402

Query: 429 LPPAPDKVVVKKGYDPKQEKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPG 488
             PAPD+ +V        EKIPASK+QEHMRIGLLDPRW+EQRD+ + EK + + VYAPG
Sbjct: 403 --PAPDEYLVSPITG---EKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPG 457

Query: 489 QAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQAIEASLKQLAERRT 548
             IE+SLKQLAERRTDIFGV  EETAIGKKIGEE+ +K                      
Sbjct: 458 LDIESSLKQLAERRTDIFGV--EETAIGKKIGEEEIQK---------------------- 493

Query: 549 DIFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARANITLEDQIHQIHKVK 608
                                  ++K TWDGH+ S+    +AA+ANITL++QI  IHK K
Sbjct: 494 ----------------------PEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAK 531

Query: 609 GLLP-DEEKEKIGPKR 623
           GL+P D+ KEKIGP +
Sbjct: 532 GLVPEDDTKEKIGPSK 547
Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.
Mus musculus (taxid: 10090)
>sp|A2VDN6|SF3A1_BOVIN Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1 Back     alignment and function description
>sp|Q15459|SF3A1_HUMAN Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1 Back     alignment and function description
>sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2 Back     alignment and function description
>sp|O13900|SA114_SCHPO Pre-mRNA-splicing factor sap114 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap114 PE=1 SV=1 Back     alignment and function description
>sp|Q86A14|SF3A1_DICDI Probable splicing factor 3A subunit 1 OS=Dictyostelium discoideum GN=sf3a1 PE=3 SV=1 Back     alignment and function description
>sp|P32524|PRP21_YEAST Pre-mRNA-splicing factor PRP21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP21 PE=1 SV=1 Back     alignment and function description
>sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens GN=CHERP PE=1 SV=3 Back     alignment and function description
>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus GN=Cherp PE=1 SV=1 Back     alignment and function description
>sp|Q5R7X2|SR140_PONAB U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii GN=U2SURP PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query910
242011623823 Splicing factor 3 subunit, putative [Ped 0.580 0.641 0.613 0.0
307171518792 Splicing factor 3 subunit 1 [Camponotus 0.541 0.622 0.616 0.0
322796789769 hypothetical protein SINV_06548 [Solenop 0.557 0.659 0.611 0.0
383847807766 PREDICTED: splicing factor 3A subunit 1 0.541 0.643 0.617 0.0
332021152768 Splicing factor 3 subunit 1 [Acromyrmex 0.540 0.640 0.615 0.0
340712926766 PREDICTED: splicing factor 3A subunit 1- 0.557 0.661 0.601 0.0
380021745766 PREDICTED: splicing factor 3A subunit 1 0.557 0.661 0.601 0.0
110755900766 PREDICTED: splicing factor 3A subunit 1 0.557 0.661 0.601 0.0
350419579766 PREDICTED: splicing factor 3A subunit 1- 0.557 0.661 0.600 0.0
91076314759 PREDICTED: similar to spliceosome associ 0.531 0.637 0.605 0.0
>gi|242011623|ref|XP_002426547.1| Splicing factor 3 subunit, putative [Pediculus humanus corporis] gi|212510684|gb|EEB13809.1| Splicing factor 3 subunit, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/628 (61%), Positives = 444/628 (70%), Gaps = 100/628 (15%)

Query: 15  TVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPGDPYHAY 74
           T +QAV+GIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNE+GNPKFNFL+ GDPY+AY
Sbjct: 13  TDTQAVIGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNSGDPYNAY 72

Query: 75  YQHRVKDIREGKVKEAPAPAQKALTTATQQKQQELLKQVTTEQPFVPKDPPKEFEFIADP 134
           YQHRVKDIREGK  +     QK  +T+  QKQQE+LKQV  EQPFVPKDPP EFEF+ADP
Sbjct: 73  YQHRVKDIREGKGDQFHQSFQKTHSTSVHQKQQEILKQV-AEQPFVPKDPPPEFEFLADP 131

Query: 135 PSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYT 194
           PSISALDLDIVKLTAQFVARNGR FLT+LM +EQRN+QFDFLRPQHSLF YFT LL+QYT
Sbjct: 132 PSISALDLDIVKLTAQFVARNGRTFLTNLMNREQRNFQFDFLRPQHSLFVYFTVLLKQYT 191

Query: 195 KILIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDW 254
           K+L+PPKD+M +LK+ES SM+ IL++VKY+A++I+YQE Q+++EE  +EK+RVAYAQIDW
Sbjct: 192 KVLLPPKDLMSKLKEESESMSKILEQVKYKAEWIKYQEQQKQKEEEALEKERVAYAQIDW 251

Query: 255 HDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERMDNGEEDLEEDEEMEEEYGQRRP 314
           HDFVVVETVDY P E GNFP PTTPDEVGARVLMQERM++GEE                 
Sbjct: 252 HDFVVVETVDYQPHETGNFPAPTTPDEVGARVLMQERMEDGEE----------------- 294

Query: 315 EDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEGTTSEEESDNENEEARK 374
             ++MQ+GS+ E +  +        +      + E  +  + E  T E            
Sbjct: 295 --NEMQMGSEPEEELDDNEDEDDRQDLDDQEDETE--DLAIMEDLTLE------------ 338

Query: 375 SKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPD 434
            K AKD+ QVQDMEEDSSSE+E + I       +  KV     +    + QP PLPP+ D
Sbjct: 339 -KGAKDDNQVQDMEEDSSSEDESDKINKITNSQATSKVTKVIAISKDGNSQPLPLPPSLD 397

Query: 435 KVVVKKGYDPKQ--------------------EKIPASKVQEHMRIGLLDPRWVEQRDKH 474
           KVV+KKGYDPKQ                    E+IP SKVQEHMRIGLLDPRWVEQRD+ 
Sbjct: 398 KVVIKKGYDPKQASKKLANLPPDEYLISPINGERIPVSKVQEHMRIGLLDPRWVEQRDRQ 457

Query: 475 LNEKINQETVYAPGQAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKLFPGQ 534
           + EK+NQETVYAPG AIEASLKQLAERRTDIFGVGDEETAIGKKIGEED +KDDK+    
Sbjct: 458 IQEKMNQETVYAPGAAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDKKKDDKV---- 513

Query: 535 AIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDTRKDDKATWDGHTSSVEAATRAARAN 594
                                                    TWDGHTSSVEAATRAARAN
Sbjct: 514 -----------------------------------------TWDGHTSSVEAATRAARAN 532

Query: 595 ITLEDQIHQIHKVKGLLPDEEKEKIGPK 622
           ITLEDQIHQIHKVKGLLPDEEKEKIGPK
Sbjct: 533 ITLEDQIHQIHKVKGLLPDEEKEKIGPK 560

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307171518|gb|EFN63359.1| Splicing factor 3 subunit 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322796789|gb|EFZ19216.1| hypothetical protein SINV_06548 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383847807|ref|XP_003699544.1| PREDICTED: splicing factor 3A subunit 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|332021152|gb|EGI61537.1| Splicing factor 3 subunit 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340712926|ref|XP_003395003.1| PREDICTED: splicing factor 3A subunit 1-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|380021745|ref|XP_003694718.1| PREDICTED: splicing factor 3A subunit 1 isoform 1 [Apis florea] Back     alignment and taxonomy information
>gi|110755900|ref|XP_393373.3| PREDICTED: splicing factor 3A subunit 1 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|350419579|ref|XP_003492232.1| PREDICTED: splicing factor 3A subunit 1-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|91076314|ref|XP_969681.1| PREDICTED: similar to spliceosome associated protein [Tribolium castaneum] gi|270002532|gb|EEZ98979.1| hypothetical protein TcasGA2_TC004839 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query910
FB|FBgn0038464784 CG16941 [Drosophila melanogast 0.309 0.359 0.686 5.8e-173
UNIPROTKB|F1NU16790 SF3A1 "Uncharacterized protein 0.336 0.387 0.605 8.6e-152
RGD|1311477791 Sf3a1 "splicing factor 3a, sub 0.352 0.405 0.603 4.7e-151
MGI|MGI:1914715791 Sf3a1 "splicing factor 3a, sub 0.352 0.405 0.603 6e-151
ZFIN|ZDB-GENE-030616-156780 sf3a1 "splicing factor 3a, sub 0.313 0.365 0.663 1.6e-150
UNIPROTKB|A2VDN6793 SF3A1 "Splicing factor 3A subu 0.337 0.387 0.607 2e-150
UNIPROTKB|E2RDL8793 SF3A1 "Uncharacterized protein 0.337 0.387 0.607 2.5e-150
UNIPROTKB|Q15459793 SF3A1 "Splicing factor 3A subu 0.337 0.387 0.607 2.5e-150
UNIPROTKB|F1RFD3793 SF3A1 "Splicing factor 3A subu 0.316 0.363 0.656 2.5e-150
UNIPROTKB|I3LQZ7757 I3LQZ7 "Uncharacterized protei 0.316 0.380 0.656 1.1e-147
FB|FBgn0038464 CG16941 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1036 (369.7 bits), Expect = 5.8e-173, Sum P(6) = 5.8e-173
 Identities = 199/290 (68%), Positives = 234/290 (80%)

Query:    11 GKDE--TVSQAVVGIIYPPPEVRNIVDKTANFVARNGPEFESRIRQNEIGNPKFNFLSPG 68
             G D+  ++S  ++GIIYPPPEVRNIVDKTA+FVARNGPEFE+RIRQNE+GNPKFNFL+ G
Sbjct:    14 GNDQPKSMSGPIIGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGG 73

Query:    69 DPYHAYYQHRVKDIREGKVK--EAPAPXXXXXXXXXXXXXXXXXXXVTTEQPFVPKDPPK 126
             DPYHAYY+H+V + REG      A A                       EQ FVPK+PP 
Sbjct:    74 DPYHAYYRHKVNEFREGNDAGITALASMKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPP 133

Query:   127 EFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYF 186
             EFEFIADPPSISALDLDIVKLTAQFVARNGR FLT+LM +EQRN+QFDFLRPQHSLFQYF
Sbjct:   134 EFEFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYF 193

Query:   187 TKLLEQYTKILIPPKDMMFRLKDES----SSMAAILDEVKYRADYIRYQEAQRKQEEARV 242
             TKLLEQYTK+LIPPKD++ +L+ ES    SSM  +L++VKYRA++ R+QEAQR++EE ++
Sbjct:   194 TKLLEQYTKVLIPPKDLLGKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREEEKI 253

Query:   243 EKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQERM 292
             E++RVAYAQIDWHDFVVVETVDY P E GNFPPPT PDEVGARVLM+ER+
Sbjct:   254 ERERVAYAQIDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARVLMEERL 303
GO:0005681 "spliceosomal complex" evidence=ISS
GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS
GO:0005686 "U2 snRNP" evidence=ISS
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=IC
GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0007067 "mitosis" evidence=IMP
GO:0071011 "precatalytic spliceosome" evidence=IDA
GO:0071013 "catalytic step 2 spliceosome" evidence=IDA
UNIPROTKB|F1NU16 SF3A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1311477 Sf3a1 "splicing factor 3a, subunit 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914715 Sf3a1 "splicing factor 3a, subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-156 sf3a1 "splicing factor 3a, subunit 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A2VDN6 SF3A1 "Splicing factor 3A subunit 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDL8 SF3A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q15459 SF3A1 "Splicing factor 3A subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFD3 SF3A1 "Splicing factor 3A subunit 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQZ7 I3LQZ7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q15459SF3A1_HUMANNo assigned EC number0.50400.56480.6481yesN/A
A2VDN6SF3A1_BOVINNo assigned EC number0.50560.56480.6481yesN/A
Q8K4Z5SF3A1_MOUSENo assigned EC number0.51290.56150.6460yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query910
pfam12230230 pfam12230, PRP21_like_P, Pre-mRNA splicing factor 4e-25
smart0064854 smart00648, SWAP, Suppressor-of-White-APricot spli 4e-22
smart0064854 smart00648, SWAP, Suppressor-of-White-APricot spli 3e-20
pfam0180554 pfam01805, Surp, Surp module 2e-19
pfam0180554 pfam01805, Surp, Surp module 1e-17
pfam12230230 pfam12230, PRP21_like_P, Pre-mRNA splicing factor 5e-15
cd0180076 cd01800, SF3a120_C, Ubiquitin-like domain of Mamma 6e-13
pfam11081172 pfam11081, DUF2890, Protein of unknown function (D 3e-04
pfam04652315 pfam04652, DUF605, Vta1 like 0.002
pfam06003264 pfam06003, SMN, Survival motor neuron protein (SMN 0.004
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like protein Back     alignment and domain information 
 Score =  104 bits (261), Expect = 4e-25
 Identities = 67/285 (23%), Positives = 112/285 (39%), Gaps = 73/285 (25%)

Query: 217 ILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPP 276
           IL+    RA++ ++Q+ + +++E   E++R+A+A IDW DFVVVET+++   +    PPP
Sbjct: 19  ILERAYKRAEWEKHQKKEEQKKEEEEEEERIAFASIDWQDFVVVETIEFNDIDVLELPPP 78

Query: 277 TTPDEVGARVLMQERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIGSDEENDYYNARMRG 336
            T +E+  R L Q+               E +      E+++M+                
Sbjct: 79  LTLNELIYRSLEQKSKA----------LEEPDAAAAPEEEEEME---------------- 112

Query: 337 RNANRGRGRMQEEINEDDMQEGTTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEE 396
                     +E+I+E+              + EE+ K                      
Sbjct: 113 --------EEEEDIDEE--------------KKEESAKKSTPPIK--------------- 135

Query: 397 QEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVVKKGYDPKQEKIPASKVQE 456
            E   P      LK  +        PS   P       K++         E IP  +  E
Sbjct: 136 -EMKIPAAGESRLKIRK-----DYVPSGNKPRAEKPKKKMIKCP---ITGELIPEDEFDE 186

Query: 457 HMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLAER 501
           HMRI LLDPR+ EQ+D++   K  Q         +  +LK+LA++
Sbjct: 187 HMRILLLDPRYKEQKDQYEA-KNQQYASNLTTDDVYRNLKRLAKK 230

This domain family is found in eukaryotes, and is typically between 212 and 238 amino acids in length. The family is found in association with pfam01805. There are two completely conserved residues (W and H) that may be functionally important. PRP21 is required for assembly of the prespliceosome and it interacts with U2 snRNP and/or pre-mRNA in the prespliceosome. This family also contains proteins similar to PRP21, such as the mammalian SF3a. SF3a also interacts with U2 snRNP from the prespliceosome, converting it to its active form. Length = 230
>gnl|CDD|197818 smart00648, SWAP, Suppressor-of-White-APricot splicing regulator Back     alignment and domain information
>gnl|CDD|197818 smart00648, SWAP, Suppressor-of-White-APricot splicing regulator Back     alignment and domain information
>gnl|CDD|216714 pfam01805, Surp, Surp module Back     alignment and domain information
>gnl|CDD|216714 pfam01805, Surp, Surp module Back     alignment and domain information
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like protein Back     alignment and domain information
>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120 Back     alignment and domain information
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890) Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 910
PF12230229 PRP21_like_P: Pre-mRNA splicing factor PRP21 like 100.0
PF12230229 PRP21_like_P: Pre-mRNA splicing factor PRP21 like 99.95
PF0180555 Surp: Surp module; InterPro: IPR000061 SWAP is der 99.68
smart0064854 SWAP Suppressor-of-White-APricot splicing regulato 99.65
smart0064854 SWAP Suppressor-of-White-APricot splicing regulato 99.57
PF0180555 Surp: Surp module; InterPro: IPR000061 SWAP is der 99.54
KOG0007|consensus341 99.48
KOG1847|consensus878 99.18
KOG0151|consensus877 98.54
KOG0007|consensus 341 98.36
KOG1847|consensus878 97.9
cd0180076 SF3a120_C Ubiquitin-like domain of Mammalian splic 96.97
cd0180676 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn 95.26
cd01802103 AN1_N ubiquitin-like domain of AN1. AN1 (also know 94.99
PTZ0004476 ubiquitin; Provisional 93.54
KOG0151|consensus877 92.23
cd0180376 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 92.08
cd0179778 NIRF_N amino-terminal ubiquitin-like domain of Np9 90.49
PF0024069 ubiquitin: Ubiquitin family; InterPro: IPR000626 U 86.29
cd0179374 Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui 84.02
>PF12230 PRP21_like_P: Pre-mRNA splicing factor PRP21 like protein; InterPro: IPR022030 This domain family is found in eukaryotes, and is typically between 212 and 238 amino acids in length Back     alignment and domain information 
Probab=100.00  E-value=2.4e-48  Score=402.91  Aligned_cols=209  Identities=44%  Similarity=0.766  Sum_probs=46.6

Q ss_pred             ChhHHHHhhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCcceEEEEEEEcCCCCCCCCCCCCC
Q psy10054        200 PKDMMFRLKDE-SSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTT  278 (910)
Q Consensus       200 ~k~li~kLk~~-~~~k~~ILer~~~RaEw~k~qe~~kkKeeee~E~Eri~fA~IDWhDFvVVETIdF~ddE~~eLPpP~t  278 (910)
                      +++++++|+++ ..+++.||+||++|++|.+|++.++++++++.++||++||+|||||||||+||+|+++|..+||||+|
T Consensus         1 ~k~~~~~L~~~~~~~k~~iL~r~~~Raew~k~~~~~k~k~e~~~e~eri~fa~IDWhDFvVVeTIdF~~~d~~~LP~P~~   80 (229)
T PF12230_consen    1 PKNILEKLKKDSSDNKQEILERCKQRAEWEKYQEEEKKKEEEEEEKERIAFASIDWHDFVVVETIDFDEDDVAELPPPLT   80 (229)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TT------B----------------
T ss_pred             CccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccccCCcceEEEEEEEeCchhhhhCCCCCC
Confidence            46789999999 78999999999999999999999999999999999999999999999999999999877899999999


Q ss_pred             hhHHHHHhHHHHHhhcCcccchhhHHHHhhhcCCCCCCccccCCCcchhhhhhhhhccccccCCCCcccccccccccccC
Q psy10054        279 PDEVGARVLMQERMDNGEEDLEEDEEMEEEYGQRRPEDDDMQIGSDEENDYYNARMRGRNANRGRGRMQEEINEDDMQEG  358 (910)
Q Consensus       279 l~eL~~rsL~q~r~~~~~~~~~~~e~~e~~~~~~~~e~~em~~~~deee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (910)
                      |++|++|+|++++++.......        .  .......|....+.++                               
T Consensus        81 ~~~l~~~~l~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~-------------------------------  119 (229)
T PF12230_consen   81 FEELGARSLEQKRMEIMEEEEA--------E--EEEQEEEEEEEEDEEE-------------------------------  119 (229)
T ss_dssp             -TTTSS--------------------------------------------------------------------------
T ss_pred             HHHHHHhcccccchhhcCcccc--------c--ccccccccccCCcccc-------------------------------
Confidence            9999999999988665322100        0  0000000000000000                               


Q ss_pred             CCccccccchhHHHhhhhhcccccccccccccCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEE
Q psy10054        359 TTSEEESDNENEEARKSKEAKDNTQVQDMEEDSSSEEEQEDIPPPPPPPSLKKVEPAPPLPSQPSIQPPPLPPAPDKVVV  438 (910)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~eee~~~i~~~~~~~~~~~~~~~p~~~~q~~~~~~~~~~~~~~~~I  438 (910)
                                                .++++......                     .. ...  + ++.+++.++|+|
T Consensus       120 --------------------------~~~ee~~~~~~---------------------~~-~~~--~-~~~~~~~~~~ki  148 (229)
T PF12230_consen  120 --------------------------EDMEESSEPSE---------------------PK-ERQ--M-KPPPAGESRMKI  148 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------cccccccccCC---------------------cc-ccC--C-CCCCCCCCCcee
Confidence                                      00000000000                     00 000  0 112345568999


Q ss_pred             ccCCCCCC-------------------CccChhHHHHhhhhhcCCchhHHHHHHHHHHhhhhccccCCchhHHHHHHHHH
Q psy10054        439 KKGYDPKQ-------------------EKIPASKVQEHMRIGLLDPRWVEQRDKHLNEKINQETVYAPGQAIEASLKQLA  499 (910)
Q Consensus       439 r~dY~Pk~-------------------q~IP~~Em~EHMRIeLLDPkWKEQKdk~~~ek~~qEs~~A~g~dIa~NLk~LA  499 (910)
                      ++||+|++                   |+||+++|+|||||+||||||||||+++++++ ..+++|++|+||++|||+||
T Consensus       149 ~kdY~p~~~~~~~~~~~~~~~~cPitGe~IP~~e~~eHmRi~LlDP~wkEqr~~~~~k~-~~~~t~~~~~dI~~NLk~lA  227 (229)
T PF12230_consen  149 RKDYDPKAKKKKASKPKEKMIICPITGEMIPADEMDEHMRIELLDPRWKEQRDRYEAKR-KQEETNAPGDDIAENLKRLA  227 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            99999984                   99999999999999999999999999998644 45559999999999999999


Q ss_pred             Hh
Q psy10054        500 ER  501 (910)
Q Consensus       500 ~~  501 (910)
                      ++
T Consensus       228 ~k  229 (229)
T PF12230_consen  228 SK  229 (229)
T ss_dssp             --
T ss_pred             CC
Confidence            85

The family is found in association with PF01805 from PFAM. There are two completely conserved residues (W and H) that may be functionally important. PRP21 is required for assembly of the prespliceosome and it interacts with U2 snRNP and/or pre-mRNA in the prespliceosome. This family also contains proteins similar to PRP21, such as the mammalian SF3a. SF3a also interacts with U2 snRNP from the prespliceosome, converting it to its active form. ; PDB: 4DGW_B.
>PF12230 PRP21_like_P: Pre-mRNA splicing factor PRP21 like protein; InterPro: IPR022030 This domain family is found in eukaryotes, and is typically between 212 and 238 amino acids in length Back     alignment and domain information
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster Back     alignment and domain information
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator Back     alignment and domain information
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator Back     alignment and domain information
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster Back     alignment and domain information
>KOG0007|consensus Back     alignment and domain information
>KOG1847|consensus Back     alignment and domain information
>KOG0151|consensus Back     alignment and domain information
>KOG0007|consensus Back     alignment and domain information
>KOG1847|consensus Back     alignment and domain information
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 Back     alignment and domain information
>cd01806 Nedd8 Nebb8-like ubiquitin protein Back     alignment and domain information
>cd01802 AN1_N ubiquitin-like domain of AN1 Back     alignment and domain information
>PTZ00044 ubiquitin; Provisional Back     alignment and domain information
>KOG0151|consensus Back     alignment and domain information
>cd01803 Ubiquitin Ubiquitin Back     alignment and domain information
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF Back     alignment and domain information
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information
>cd01793 Fubi Fubi ubiquitin-like protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query910
2dt7_B85 Solution Structure Of The Second Surp Domain Of Hum 1e-34
2dt6_A64 Solution Structure Of The First Surp Domain Of Huma 2e-23
1zkh_A86 Solution Structure Of A Human Ubiquitin-Like Domain 7e-06
1we7_A115 Solution Structure Of Ubiquitin-Like Domain In Sf3a 9e-06
2e5z_A90 Solution Structure Of The Surp2 Domain In Splicing 3e-04
2e60_A101 Solution Structure Of The Surp1 Domain In Splicing 8e-04
>pdb|2DT7|B Chain B, Solution Structure Of The Second Surp Domain Of Human Splicing Factor Sf3a120 In Complex With A Fragment Of Human Splicing Factor Sf3a60 Length = 85 Back     alignment and structure 
Iteration: 1

 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/76 (89%), Positives = 71/76 (93%)
Query: 120 VPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQ 179
           VPK+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDFLRPQ
Sbjct: 10  VPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQ 69
Query: 180 HSLFQYFTKLLEQYTK 195
           HSLF YFTKL+EQYTK
Sbjct: 70  HSLFNYFTKLVEQYTK 85
>pdb|2DT6|A Chain A, Solution Structure Of The First Surp Domain Of Human Splicing Factor Sf3a120 Length = 64 Back     alignment and structure
>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86 Back     alignment and structure
>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115 Back     alignment and structure
>pdb|2E5Z|A Chain A, Solution Structure Of The Surp2 Domain In Splicing Factor, ArginineSERINE-Rich 8 Length = 90 Back     alignment and structure
>pdb|2E60|A Chain A, Solution Structure Of The Surp1 Domain In Splicing Factor, ArginineSERINE-Rich 8 Length = 101 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query910
4dgw_B152 PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A 8e-49
4dgw_B152 PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A 8e-06
2dt7_B85 Splicing factor 3 subunit 1; structure genomics, S 5e-35
2dt7_B85 Splicing factor 3 subunit 1; structure genomics, S 8e-14
2e5z_A90 SFRS8 protein, splicing factor, arginine/serine-ri 3e-27
2e5z_A90 SFRS8 protein, splicing factor, arginine/serine-ri 5e-06
2dt6_A64 Splicing factor 3 subunit 1; structure genomics, S 4e-27
2dt6_A64 Splicing factor 3 subunit 1; structure genomics, S 7e-11
1ug0_A88 Splicing factor 4; SURP domain, structural genomic 9e-26
1ug0_A88 Splicing factor 4; SURP domain, structural genomic 7e-07
1x4o_A78 Splicing factor 4; structural genomics, NPPSFA, na 1e-25
1x4o_A78 Splicing factor 4; structural genomics, NPPSFA, na 1e-06
2e60_A101 SFRS8 protein, splicing factor, arginine/serine-ri 7e-25
2e60_A101 SFRS8 protein, splicing factor, arginine/serine-ri 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 9e-08
1we6_A111 Splicing factor, putative; structural genomics, ub 4e-07
3u5c_F 225 RP14, S2, YS8, 40S ribosomal protein S5; translati 8e-07
1pk8_A 422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 8e-04
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 152 Back     alignment and structure
 Score =  169 bits (428), Expect = 8e-49
 Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 9/154 (5%)

Query: 137 ISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKI 196
           IS  D++++KLTA++ A++    +  ++ K+    + +F+   H L + FT  + QY ++
Sbjct: 3   ISRRDMEVIKLTARYYAKDKS-IVEQMISKDGEA-RLNFMNSSHPLHKTFTDFVAQYKRV 60

Query: 197 LIPPKDMMFRLKDESSSMAAILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHD 256
                       +   S   ILD    R  Y  +++ + ++ +  VE  ++ +A I W  
Sbjct: 61  YSFTGQ------EIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDK 114

Query: 257 FVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQE 290
           F  V            F      +++  R +   
Sbjct: 115 FTQVAKFSIPEDTE-IFEGSLDLEQMRLRRVQTG 147
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 152 Back     alignment and structure
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Length = 85 Back     alignment and structure
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Length = 85 Back     alignment and structure
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 Back     alignment and structure
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 Back     alignment and structure
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Length = 64 Back     alignment and structure
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Length = 64 Back     alignment and structure
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1 Length = 88 Back     alignment and structure
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1 Length = 88 Back     alignment and structure
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1 Length = 78 Back     alignment and structure
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1 Length = 78 Back     alignment and structure
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115 Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111 Back     alignment and structure
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query910
4dgw_B152 PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A 100.0
2dt7_B85 Splicing factor 3 subunit 1; structure genomics, S 99.92
2e5z_A90 SFRS8 protein, splicing factor, arginine/serine-ri 99.88
2e60_A101 SFRS8 protein, splicing factor, arginine/serine-ri 99.85
1x4o_A78 Splicing factor 4; structural genomics, NPPSFA, na 99.83
2dt6_A64 Splicing factor 3 subunit 1; structure genomics, S 99.81
1ug0_A88 Splicing factor 4; SURP domain, structural genomic 99.78
2dt7_B85 Splicing factor 3 subunit 1; structure genomics, S 99.73
2dt6_A64 Splicing factor 3 subunit 1; structure genomics, S 99.56
2e60_A101 SFRS8 protein, splicing factor, arginine/serine-ri 99.53
1ug0_A88 Splicing factor 4; SURP domain, structural genomic 99.39
1x4o_A78 Splicing factor 4; structural genomics, NPPSFA, na 99.38
2e5z_A90 SFRS8 protein, splicing factor, arginine/serine-ri 99.31
4dgw_B152 PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A 99.18
1x4p_A66 Putative splicing factor, arginine/serine-rich 14; 98.46
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 96.22
1we6_A111 Splicing factor, putative; structural genomics, ub 95.63
1x4p_A66 Putative splicing factor, arginine/serine-rich 14; 95.36
3k9o_B96 Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b 94.7
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 94.33
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 93.55
3a9j_A76 Ubiquitin; protein complex, cytoplasm, isopeptide 93.49
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 93.2
2uyz_B79 Small ubiquitin-related modifier 1; sumoylation, c 93.2
1sif_A88 Ubiquitin; hydrophobic mutants, folding, stability 93.04
3dbh_I88 NEDD8; cell cycle, activating enzyme, apoptosis, m 92.78
4hcn_B98 Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas 92.64
1wgd_A93 Homocysteine-responsive endoplasmic reticulum- res 92.11
1wyw_B97 Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho 92.08
3n3k_B85 Ubiquitin; hydrolase, protease, thiol protease, DU 91.92
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 91.72
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 91.67
2kan_A94 Uncharacterized protein AR3433A; ubiquitin fold, a 91.48
2l7r_A93 Ubiquitin-like protein FUBI; structural genomics, 91.31
1wy8_A89 NP95-like ring finger protein, isoform A; ubiquiti 91.2
3u5c_f152 40S ribosomal protein S31; translation, ribosome, 91.12
3phx_B79 Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu 90.91
3vdz_A111 Ubiquitin-40S ribosomal protein S27A; gadolinium, 90.75
1yx5_B98 Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s 90.74
2i5o_A39 DNA polymerase ETA; zinc finger, DNA polymerase,PO 90.64
3l0w_B169 Monoubiquitinated proliferating cell nuclear antig 90.58
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 90.52
1se9_A126 Ubiquitin family; ubiquitin-like, cell-free, wheat 89.08
2ojr_A111 Ubiquitin; lanthide-binding TAG, terbium, TB, SAD 88.84
2hj8_A88 Interferon-induced 17 kDa protein; HR2873B, human 88.58
2kdi_A114 Ubiquitin, vacuolar protein sorting-associated pro 87.92
3q3f_A189 Ribonuclease/ubiquitin chimeric protein; domain SW 87.2
1v5o_A102 1700011N24RIK protein; hypothetical protein, ubiqu 87.09
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 86.39
3u5e_m128 60S ribosomal protein L40; translation, ribosome, 86.14
1wx8_A96 Riken cDNA 4931431F19; ubiquitin-like domain, ubiq 85.6
1j8c_A125 Ubiquitin-like protein hplic-2; ubiquitin-like dom 84.92
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 84.21
1yqb_A100 Ubiquilin 3; structural genomics consortium, ubiqu 83.92
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 83.95
1wx7_A106 Ubiquilin 3; ubiquitin-like domain, structural gen 82.3
3v6c_B91 Ubiquitin; structural genomics, structural genomic 81.02
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=3.6e-49  Score=386.26  Aligned_cols=146  Identities=21%  Similarity=0.425  Sum_probs=123.9

Q ss_pred             CCChhhHHHHHHHHHHHHHcChHHHHHHHHhhccCCCCcccCCCCCccHHHHHHHHHHHhhcCCChhHHHHhhhhcccHH
Q psy10054        136 SISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTKILIPPKDMMFRLKDESSSMA  215 (910)
Q Consensus       136 ~Isa~DLdIIKlTAqFVArnG~~Fl~~L~~Re~~NpqFdFLkP~Hslf~yF~~lVeqYskVL~p~k~li~kLk~~~~~k~  215 (910)
                      +||++||+|||+||+||||||. |+..|++|+. ||||+||+|+|+||+||++||+||++||+|+.      +++..+++
T Consensus         2 gis~~dldIIklTA~FvArnG~-F~~~L~~re~-npqF~FL~p~h~l~~~F~~lv~qY~~vl~~~~------~~~~~~~~   73 (152)
T 4dgw_B            2 GISRRDMEVIKLTARYYAKDKS-IVEQMISKDG-EARLNFMNSSHPLHKTFTDFVAQYKRVYSFTG------QEIKKSKR   73 (152)
T ss_dssp             --CHHHHHHHHHHHHHHTTTSS-HHHHHHHHTC-CTTSGGGSTTSTTHHHHHHHHHHHHHHTTSTT------CCCCCCHH
T ss_pred             CCCHHHHHHHHHHHHHheecCH-HHHHHHHhcc-CcccccCCCCCccHHHHHHHHHHHHHHHCccc------ccccccHH
Confidence            7999999999999999999999 9999999999 99999999999999999999999999999985      56778899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCcceEEEEEEEcCCCCCCCCCCCCChhHHHHHhHHHH
Q psy10054        216 AILDEVKYRADYIRYQEAQRKQEEARVEKDRVAYAQIDWHDFVVVETVDYMPGEPGNFPPPTTPDEVGARVLMQE  290 (910)
Q Consensus       216 ~ILer~~~RaEw~k~qe~~kkKeeee~E~Eri~fA~IDWhDFvVVETIdF~ddE~~eLPpP~tl~eL~~rsL~q~  290 (910)
                      +||+||++|++|.+++++++++++++.|++|++||+|||||||||+||+|+++| .+||||+||++|++|+|+++
T Consensus        74 ~iL~r~~~Rae~~k~~~~~~~k~e~~~e~er~~fa~IDW~dFvVVeTI~F~~~d-~~LPpP~~~~~l~~~sl~~~  147 (152)
T 4dgw_B           74 TILDNCFERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKFSIPEDT-EIFEGSLDLEQMRLRRVQTG  147 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCCCCCBC--------------CCTTTSSCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccEEEEEEecCccc-ccCCCCCCHHHHHHHhhccc
Confidence            999999999999999999999999999999999999999999999999999877 89999999999999999886
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Back     alignment and structure
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1 Back     alignment and structure
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Back     alignment and structure
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1 Back     alignment and structure
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Back     alignment and structure
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Back     alignment and structure
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1 Back     alignment and structure
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1 Back     alignment and structure
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae} Back     alignment and structure
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1 Back     alignment and structure
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Back     alignment and structure
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Back     alignment and structure
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I Back     alignment and structure
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Back     alignment and structure
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f Back     alignment and structure
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Back     alignment and structure
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A Back     alignment and structure
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Back     alignment and structure
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Back     alignment and structure
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Back     alignment and structure
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Back     alignment and structure
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Back     alignment and structure
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Back     alignment and structure
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Back     alignment and structure
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 910
d2dt7b184 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, 3e-30
d2dt7b184 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, 2e-18
d2dt6a163 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, 3e-25
d2dt6a163 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, 6e-17
d1ug0a_88 a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus muscu 8e-22
d1ug0a_88 a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus muscu 1e-13
d1x4oa165 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus m 2e-20
d1x4oa165 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus m 8e-13
d1ogwa_76 d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax 3e-05
d1zkha186 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t 2e-04
d1we6a_111 d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi 8e-04
d1wh3a_87 d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like 0.001
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure

class: All alpha proteins
fold: Surp module (SWAP domain)
superfamily: Surp module (SWAP domain)
family: Surp module (SWAP domain)
domain: Splicing factor 3 subunit 1, SF3A1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 3e-30
 Identities = 68/80 (85%), Positives = 73/80 (91%)

Query: 116 EQPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDF 175
           ++  VPK+PP EFEFIADPPSISA DLD+VKLTAQFVARNGR FLT LMQKEQRNYQFDF
Sbjct: 5   QETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDF 64

Query: 176 LRPQHSLFQYFTKLLEQYTK 195
           LRPQHSLF YFTKL+EQYTK
Sbjct: 65  LRPQHSLFNYFTKLVEQYTK 84
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]} Length = 63 Back     information, alignment and structure
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]} Length = 63 Back     information, alignment and structure
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 65 Back     information, alignment and structure
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 65 Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 Back     information, alignment and structure
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111 Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query910
d2dt7b184 Splicing factor 3 subunit 1, SF3A1 {Human (Homo sa 99.88
d2dt6a163 Splicing factor 3 subunit 1, SF3A1 {Human (Homo sa 99.81
d1x4oa165 Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10 99.75
d1ug0a_88 Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10 99.72
d2dt7b184 Splicing factor 3 subunit 1, SF3A1 {Human (Homo sa 99.68
d2dt6a163 Splicing factor 3 subunit 1, SF3A1 {Human (Homo sa 99.54
d1x4oa165 Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10 99.44
d1ug0a_88 Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10 99.35
d1we6a_111 Splicing factor 3 subunit 1, C-terminal domain {Th 97.78
d1zkha186 Splicing factor 3 subunit 1, C-terminal domain {Hu 96.4
d1ogwa_76 Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} 96.28
d2zeqa178 Ubiquitin-like domain of parkin {Mouse (Mus muscul 93.11
d1wh3a_87 2'-5'-oligoadenylate synthetase-like protein, OASL 92.02
d1z2ma276 Interferon-induced 15 kDa protein {Human (Homo sap 91.0
d1yqba184 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 90.37
d1z2ma176 Interferon-induced 15 kDa protein {Human (Homo sap 89.51
d1bt0a_73 Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI 87.07
d1x1ma194 Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta 86.62
d1j8ca_103 Ubiquitin-like N-terminal domain of PLIC-2 {Human 86.54
d2faza176 Ubiquitin-like PHD and RING finger domain-containi 86.45
d1wiaa_95 Ubiquitin-like protein bab25500 (2010008E23Rik) {M 85.92
d1wy8a176 Ubiquitin-like PHD and RING finger domain-containi 85.88
d1euvb_79 SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy 85.69
d1ttna180 Dendritic cell-derived ubiquitin-like protein {Hum 85.19
d1m94a_73 Ubiquitin-like modifier protein hub1 {Baker's yeas 82.65
d2bwfa173 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 81.48
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Surp module (SWAP domain)
superfamily: Surp module (SWAP domain)
family: Surp module (SWAP domain)
domain: Splicing factor 3 subunit 1, SF3A1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.3e-23  Score=184.33  Aligned_cols=79  Identities=86%  Similarity=1.339  Sum_probs=75.4

Q ss_pred             CCCCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHHHcChHHHHHHHHhhccCCCCcccCCCCCccHHHHHHHHHHHh
Q psy10054        117 QPFVPKDPPKEFEFIADPPSISALDLDIVKLTAQFVARNGRGFLTSLMQKEQRNYQFDFLRPQHSLFQYFTKLLEQYTK  195 (910)
Q Consensus       117 ~~~~P~~PPp~feFs~~pP~Isa~DLdIIKlTAqFVArnG~~Fl~~L~~Re~~NpqFdFLkP~Hslf~yF~~lVeqYsk  195 (910)
                      ..++|..|||.+.|+..+|+|+++||+||++||+|||+||..|+..|++|+.+||+|+||+++|+||.||++||++|++
T Consensus         6 ~~~~p~~pPp~~~~~~~pp~i~~~~l~iI~~tA~fVa~~G~~fe~~l~~~~~~Np~F~FL~~~~~~~~yY~~lv~~Y~~   84 (84)
T d2dt7b1           6 ETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK   84 (84)
T ss_dssp             CCCCSCCCCCCSCCCSSCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred             cCCCCCCCCCCCccCCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHcccCCCceeccCCCCcCcHHHHHHHHHHhC
Confidence            4466788999999999999999999999999999999999999999999999999999999999999999999999985
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure