Diaphorina citri psyllid: psy10178

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-----
MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGPKVKCISYYDETAPSKPNTIVNSDVHVVKSEDKANGMTTTKPEETSVKIENNKEGESTVKKENTEGEETVKTDNTKEGEATVKLENGGEEPSATDKAEKETTEKPEVKFVPKIIDPAGNAKRRRLSEYEDESYCRDEASLYPVSDSQDNIARRCIALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEHGLRATKTRNYDKDDDDWTDCCSSLSPQAESEWWWDYMENIRENVLVSLANISGHIDLDQYPEDISRPILDGLLHWAVCPAAQGQDPFPSSSCNLSPQRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASREKRKIVTKKSVANQHGIGALRDNPDSMGTSLDMLRRVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNR
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccccccEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
******************************************************************VKCISYY***************************************************************************************************************************YCRDEASLYPVSDSQDNIARRCIALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEH*******************CCS*LSPQAESEWWWDYMENIRENVLVSLANISGHIDLDQYPEDISRPILDGLLHWAVCPAAQ*********CNLSPQRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGA*********TSLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDL**************VT*KSVANQHGIGALRDNPDSMGTSLD**********************TSLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPD*****
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MAATQAEPPVPEASGPVDPGASVDMEHGGPPPPQSLQNGEKNNKPPSGPPTPGGPPPGPDMNVGPKVKCISYYDETAPSKPNTIVNSDVHVVKSEDKANGMTTTKPEETSVKIENNKEGESTVKKENTEGEETVKTDNTKEGEATVKLENGGEEPSATDKAEKETTEKPEVKFVPKIIDPAGNAKRRRLSEYEDESYCRDEASLYPVSDSQDNIARRCIALSNILRNLTFVPGNELEFSKNSTFLRLLGRLILAYHEHGLRATKTRNYDKDDDDWTDCCSSLSPQAESEWWWDYMENIRENVLVSLANISGHIDLDQYPEDISRPILDGLLHWAVCPAAQGQDPFPSSSCNLSPQRLALEALCKLCVTDNNVDLVIATPPYARLERLTYVLTRFLCKNEDQVLREFGVNLLHYLAAADSAMSRTIALQSPCISLLVAFIEQAEQNALGVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNSEHASREKRKIVTKKSVANQHGIGALRDNPDSMGTSLDMLRRVANQHGIGALRDNPDSMGTSLDMLRRTARTLLHLSRHPDNKPLFLQQEQRLLALVMSQILDQQVAAIISRVLYQTRPDLYQNR

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Trithorax group protein osa Trithorax group (trxG) protein required for embryonic segmentation, development of the notum and wing margin, and photoreceptor differentiation. Required for the activation of genes such as Antp, Ubx and Eve. Binds to DNA without specific affinity, suggesting that it is recruited to promoters by promoter-specific proteins. Essential component of the Brahma complex, a multiprotein complex which is the equivalent of the yeast SWI/SNF complex and acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. This complex can both serve as a transcriptional coactivator or corepressor, depending on the context. Acts as an essential coactivator for Zeste, which recruits the whole complex to specific genes. In contrast, it acts as a corepressor for Wg target genes, possibly via an interaction with Pan and Gro. It also acts as a negative regulator for proneural achaete-scute, when it is directly recruited by Pan and Chi. Also represses E2f activation.confidentQ8IN94

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0090544 [CC]BAF-type complexprobableGO:0043234, GO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0070603, GO:0043227, GO:0043226, GO:0044422
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0045893 [BP]positive regulation of transcription, DNA-dependentprobableGO:0009893, GO:0019222, GO:0031328, GO:0031326, GO:0031325, GO:2001141, GO:0031323, GO:0010628, GO:0050789, GO:0080090, GO:0010604, GO:0009891, GO:2000112, GO:0019219, GO:0065007, GO:0048518, GO:0010468, GO:0045935, GO:0060255, GO:0009889, GO:0050794, GO:0008150, GO:0051171, GO:0051173, GO:0051252, GO:0051254, GO:0006355, GO:0010557, GO:0010556, GO:0048522

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1JDH, chain A
Confidence level:confident
Coverage over the Query: 353-441,462-649
View the alignment between query and template
View the model in PyMOL
Template: 2Z6H, chain A
Confidence level:confident
Coverage over the Query: 224-255,271-272,296-617
View the alignment between query and template
View the model in PyMOL
Template: 3NOW, chain A
Confidence level:probable
Coverage over the Query: 209-258,296-442,461-486
View the alignment between query and template
View the model in PyMOL
Template: 2J1D, chain G
Confidence level:probable
Coverage over the Query: 73-125
View the alignment between query and template
View the model in PyMOL