Diaphorina citri psyllid: psy10461

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------136
YIPIRTPARKLTATPTPIAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLLSNGKHCGKTPDVGSRTYAEVMREQLVRGEEKEVRKKLQDKAKDGTLKAVPTNGEAKAAPKKRGRWDQTSDGDVTPAKKKVAAAEWEKEADVNIEAQIRDIQNRKKDVSEGGGEEKQKRVGLGESGYFDSDIYDGGGKFEGYVKSIADDDFDYQASFNQNKRSGYTAPAALLNDIAQSEKDYDPFADRRQKTVAEKEDEYRAIRRRMIISPERVDPFAEGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGYIPIRTPARKLTATPTPIAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLLVDVDEDSLSPEEAKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAGGVTPAATRWDETPGHPKPGAETPGATPSTRLWDATPGHATPGAATPGRETPSHDKAQSSIRRNRWDETPKTERETPGHSSGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAACFFIGCSMFAPTVWHLWIYTRSANANFYFGVTLAFATSQIFLLTDLLFAYLKRDYTLENGIQKTIKGKPARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
ccccccccccccccccccccccccccccccccHHccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHcccHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
YIPIRTPARKLTATPTPIAGTPTGFFI*******************FLKPEDAQYFDKLL******************************************************************************************************************************F****YDGGGKFEGY*K**********************************************************IRRRMIIS***VDPFAEGHLAAMTPEQIQAYRWER******************************************************PLTDDELEAMFPPGYKVLQPPAGYIPIRTPARKLTATPTPIAGTPTGFFIQ*****************PFLKPEDAQYFDKLLVDV**************IMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAGGVT**************************************************************************************************************************************************************************************AYRW********RPLTDDELEAMFPPGYKVLQPPAACFFIGCSMFAPTVWHLWIYTRSANANFYFGVTLAFATSQIFLLTDLLFAYLKRDYTLENGIQKTIKGKPARLVGASEIINRVVDDLKDENEQYRKMVMESIEKTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKS*KVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
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YIPIRTPARKLTATPTPIAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLLSNGKHCGKTPDVGSRTYAEVMREQLVRGEEKEVRKKLQDKAKDGTLKAVPTNGEAKAAPKKRGRWDQTSDGDVTPAKKKVAAAEWEKEADVNIEAQIRDIQNRKKDVSEGGGEEKQKRVGLGESGYFDSDIYDGGGKFEGYVKSIADDDFDYQASFNQNKRSGYTAPAALLNDIAQSEKDYDPFADRRQKTVAEKEDEYRAIRRRMIISPERVDPFAEGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAGYIPIRTPARKLTATPTPIAGTPTGFFIQQEDKTAKYMDNQPKGNLPFLKPEDAQYFDKLLVDVDEDSLSPEEAKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAGGVTPAATRWDETPGHPKPGAETPGATPSTRLWDATPGHATPGAATPGRETPSHDKAQSSIRRNRWDETPKTERETPGHSSGWAETPKTDRAGPGGDLIQETPTPGGVSSKRRSRWDETPQATPSGAMTPSAATPGGMTPSTPITPHVGSTPLMTPSGVTPTGNKAMAMATPTPGHLAAMTPEQIQAYRWEREIDERNRPLTDDELEAMFPPGYKVLQPPAACFFIGCSMFAPTVWHLWIYTRSANANFYFGVTLAFATSQIFLLTDLLFAYLKRDYTLENGIQKTIKGKPARLVGASEIINRVxxxxxxxxxxxxxxxxxxxxxTMSNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
U2 snRNP component HSH155 Contacts pre-mRNA on both sides of the branch site early in spliceosome assembly.confidentP49955

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005686 [CC]U2 snRNPprobableGO:0005575, GO:0032991, GO:0043231, GO:0030532, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0044422
GO:0071004 [CC]U2-type prespliceosomeprobableGO:0005575, GO:0005622, GO:0032991, GO:0043231, GO:0071010, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005684, GO:0043227, GO:0043226, GO:0005681
GO:0003729 [MF]mRNA bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1B3U, chain A
Confidence level:very confident
Coverage over the Query: 903-1250
View the alignment between query and template
View the model in PyMOL
Template: 1B3U, chain A
Confidence level:very confident
Coverage over the Query: 904-1325
View the alignment between query and template
View the model in PyMOL
Template: 3LQV, chain P
Confidence level:very confident
Coverage over the Query: 783-821
View the alignment between query and template
View the model in PyMOL
Template: 3LQV, chain P
Confidence level:very confident
Coverage over the Query: 330-368
View the alignment between query and template
View the model in PyMOL
Template: 1U6G, chain C
Confidence level:very confident
Coverage over the Query: 902-1342
View the alignment between query and template
View the model in PyMOL
Template: 2F9D, chain P
Confidence level:probable
Coverage over the Query: 285-321
View the alignment between query and template
View the model in PyMOL
Template: 3OQS, chain A
Confidence level:probable
Coverage over the Query: 899-1251
View the alignment between query and template
View the model in PyMOL
Template: 1DEQ, chain A
Confidence level:probable
Coverage over the Query: 607-647
View the alignment between query and template
View the model in PyMOL