Diaphorina citri psyllid: psy10680

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------

MKQSVSVRLVSLEARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITTRQWKREYWRRKSSEILAEW

cccEEEEEcccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccccccCEEEEcccHHHHHHHHHHHHHHHHccccEEEEECccccccHHHHHHHccccEEEEcccHHHHHHHcccccccCEEEEEEHHHHHHcccccHHHHHHHHHccccccccccCEEEEEcccHHHHHHccccccccccCEEEccHHHcccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccEEEEEEcccccHHccccccccEEEEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHcccccEEEEEcccccccccccccEEEccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccHHHccc

*KQSVSVRLVSLEARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGS*************WWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN************************

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
ATP-dependent RNA helicase dbp2	ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing.	confident	Q5B0J9
ATP-dependent RNA helicase dbp2	ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing.	confident	Q4X195
ATP-dependent RNA helicase DBP2	ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing.	confident	P24783

Prediction of Gene Ontology Terms

GO Term	Description	Confidence Level	Parent GO Terms
GO:0044428 [CC]	nuclear part	probable	GO:0005575, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0043186 [CC]	P granule	probable	GO:0005737, GO:0035770, GO:0043232, GO:0060293, GO:0044464, GO:0043229, GO:0005623, GO:0030529, GO:0005575, GO:0044444, GO:0043228, GO:0044424, GO:0032991, GO:0005622, GO:0043226, GO:0045495
GO:0005829 [CC]	cytosol	probable	GO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0033391 [CC]	chromatoid body	probable	GO:0005737, GO:0035770, GO:0043232, GO:0044464, GO:0043229, GO:0005623, GO:0030529, GO:0005575, GO:0044444, GO:0043228, GO:0044424, GO:0032991, GO:0005622, GO:0043226

Prediction of Enzyme Commission Number

EC Number	Description	Confidence Level
3.-.-.-	Hydrolases.	probable
3.6.-.-	Acting on acid anhydrides.	probable
3.6.4.-	Acting on acid anhydrides; involved in cellular and subcellular movement.	probable
3.6.4.13	RNA helicase.	probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3PEY, chain A
Confidence level:very confident
Coverage over the Query: 21-76,112-277,296-315,365-495
View the alignment between query and template
View the model in PyMOL

Template: 1FUU, chain A
Confidence level:very confident
Coverage over the Query: 20-76,112-274
View the alignment between query and template
View the model in PyMOL

Template: 2YKG, chain A
Confidence level:very confident
Coverage over the Query: 39-76,112-405,426-460,472-490
View the alignment between query and template
View the model in PyMOL

Template: 2V1X, chain A
Confidence level:confident
Coverage over the Query: 26-76,112-119,131-283,324-346,362-529
View the alignment between query and template
View the model in PyMOL